Citrus Sinensis ID: 002148

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------96

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL

cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEcc

MELQNTVKEALNAlyhhpddavRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKkfhkgppkvrTQISIAVAALAVHIsaedwggggivNWLRdemnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKifgsdpscaSYLHNLIEALFKRTTCLLTSieeftsrpdvaddCFLLASRcirycpqlfipssvfpslvdcsmigiTVQHREASNSILTFLSDIFDLaksckgeeflsvrdsviiprgaSITRILIASLTgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAasgvdvnaamapveELSDVCRRNRTVQEIVQGAlkplelnrvpvl

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKfhkgppkvRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSieeftsrpdvADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKgeeflsvrdsviiprGASITRILIASltgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIvqgalkplelnrvpvl

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL

**********LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK******************SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG********CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGAL***********

*ELQNTVKEALNALYHH*****RMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF*********RRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI************SRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL

*ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		959	2.2.26 [Sep-21-2011]
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.875	0.910	0.256	3e-75
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.875	0.910	0.254	5e-74
Q9USZ2		955	Uncharacterized protein C	yes	no	0.918	0.922	0.228	9e-55
Q99189		972	mRNA transport regulator	yes	no	0.689	0.680	0.241	3e-36
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.768	0.765	0.230	8e-30
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.772	0.769	0.222	1e-29
O94829		963	Importin-13 OS=Homo sapie	no	no	0.770	0.767	0.222	2e-29
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.770	0.767	0.221	3e-29
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.767	0.764	0.227	3e-28
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.869	0.870	0.224	1e-27

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function desciption

 Score =  284 bits (726), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 236/919 (25%), Positives = 423/919 (46%), Gaps = 79/919 (8%)

Query: 7   VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66
           V +A+ ALYH PD + + +A  WL + Q ++ AW+++D LL     ++E+  F +QT++ 
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQ-IRQDVESCYFAAQTMKM 69

Query: 67  KVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGI 126
           K+Q    ELP+++   L+DSL T ++      P + TQ+++A+A LA+ + +  W G   
Sbjct: 70  KIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPS--WKG--C 125

Query: 127 VNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLT 186
           V  L ++ ++    +P  LE+LTVLPEEV +  +     RR +  ++L       +S L 
Sbjct: 126 VQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLM 185

Query: 187 ACLHINELKEQVL----EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            C+      E++L        SW  L       VL S+ +    L +L  E+L +   + 
Sbjct: 186 TCVEKAGTDEKMLMKVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DK 236

Query: 243 ISELIHYSAAGSSGGA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIA 293
            S  +H +A+     A         N+PL   +   +++L+   H+  + +D + V    
Sbjct: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYC 296

Query: 294 RLFADMGDSYVELIATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350
           R+F ++ ++++E I     + +     +  LL  A HP+Y++  ++FNFW+ L   L K 
Sbjct: 297 RIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKT 356

Query: 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRY 410
           +  +  G              +F++  + L+  ++   Q   D++ +  E+  +F   R 
Sbjct: 357 NDEVIHG--------------IFKAYIQRLLHALARHCQLEPDHEGVP-EETDDFGEFRM 401

Query: 411 AVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV 470
            V+D++ D   ++G       LY    EG       +  W   EA LF + AI+     V
Sbjct: 402 RVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWEVTEAVLFIMAAIA---KSV 451

Query: 471 EAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAASSDPSILASVLSILTSGMS 528
           + E  P ++ +L  + + P+ + T     +I    +  +    +P  L  VL  L  G+ 
Sbjct: 452 DPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLC 511

Query: 529 TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 588
             +  A+AAA A  +IC  CR  +  + +GL  + R+      S  +S E ++ L++  +
Sbjct: 512 -EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL----DSFLLSPEAAVGLLKGTA 566

Query: 589 MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 648
           +V+  LP     + L  LC   V  L+++++Q P         D TV +DR A IFR+ N
Sbjct: 567 LVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGISSDPTVFLDRLAVIFRHTN 623

Query: 649 --------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITI 700
                   HP      IQ +WP+     +    D R +E  CR  ++AVR   +     +
Sbjct: 624 PIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALL 681

Query: 701 GAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEE 760
             ++ ++  +Y  HQ  CFLYL S ++  +G +  C   L ++++AL   T  LL     
Sbjct: 682 QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNG 741

Query: 761 FTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSD 820
             + PD  DD F LA+R I+  P   + S V   ++  ++   T+ HR+A+ S++ FL D
Sbjct: 742 LQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRD 801

Query: 821 IFDLAKSCKGEEFLSVRD----SVIIPRGASITRILIASLTGALPSSRLETVTYALLALT 876
           +     +   EE   +R      V+   G  +   L+ +    LP   L  V   L  + 
Sbjct: 802 LIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIM 861

Query: 877 RAYGVRSLEWAKESVSLIP 895
           +        W + S+  +P
Sbjct: 862 QVDRPTFCRWLENSLKGLP 880

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		959
225457174		960	PREDICTED: transportin-3 [Vitis vinifera	0.998	0.997	0.848	0.0
449440732		968	PREDICTED: transportin-3-like [Cucumis s	0.998	0.989	0.820	0.0
356562787		960	PREDICTED: transportin-3-like isoform 1	0.998	0.997	0.825	0.0
255540833		967	transportin, putative [Ricinus communis]	0.998	0.990	0.813	0.0
356562789		968	PREDICTED: transportin-3-like isoform 2	0.998	0.989	0.819	0.0
356512770		959	PREDICTED: transportin-3-like isoform 1	0.997	0.997	0.822	0.0
356512772		967	PREDICTED: transportin-3-like isoform 2	0.997	0.989	0.815	0.0
297797229		961	hypothetical protein ARALYDRAFT_496440 [	0.993	0.991	0.752	0.0
42568712		958	armadillo/beta-catenin-like repeat-conta	0.993	0.994	0.751	0.0
357146633		964	PREDICTED: transportin-3-like [Brachypod	0.989	0.984	0.654	0.0

>gi\|225457174\|ref\|XP_002283854.1\| PREDICTED: transportin-3 [Vitis vinifera] gi\|297733855\|emb\|CBI15102.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1664 bits (4309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 814/959 (84%), Positives = 881/959 (91%), Gaps = 1/959 (0%)

Query: 1   MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
           MELQNTVKEALNALYHHPDD+VRMQADRWLQDFQ TIDAWQV+DNLLHDATSNLETLIFC
Sbjct: 1   MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFC 60

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
           SQTLRSKVQRD EELPSEA R L+DSLNTLLKKFHKGPPKVRTQISIAVAALAVH+ AED
Sbjct: 61  SQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAED 120

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           WG GGIV WLRDEMNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEV
Sbjct: 121 WGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEV 180

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           AL+ LTACL+INELKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASV
Sbjct: 181 ALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASV 240

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
           NV+SELIHY+ AGSSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMG
Sbjct: 241 NVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMG 300

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEA
Sbjct: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEA 360

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAA 420
           S EAER+RRLQVFRS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRYAVADVLIDAA
Sbjct: 361 SIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRYAVADVLIDAA 420

Query: 421 SVLGGDATLKILYIKFVEGVACCGNK-HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVM 479
           SVLGG+ATLKILY+K VE VA CGN+ HNEWRPAEAAL+CIRAIS YVSVVEAEVMPQVM
Sbjct: 421 SVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRAISNYVSVVEAEVMPQVM 480

Query: 480 ALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAAL 539
            +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ IL SGMS SED+AAAAAL
Sbjct: 481 NMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDILMSGMSISEDSAAAAAL 540

Query: 540 AFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 599
           AF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLHLVEALSMVITELP   A
Sbjct: 541 AFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLHLVEALSMVITELPPDHA 600

Query: 600 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQR 659
           KKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAYIFRYVNHPEAVADAIQR
Sbjct: 601 KKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAYIFRYVNHPEAVADAIQR 660

Query: 660 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCF 719
           LWPIFKAIFD+RAWDMRTMESLCRACKYAVRTS RFMGITIGA+LEEIQGLYQ H QPCF
Sbjct: 661 LWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYQLHHQPCF 720

Query: 720 LYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCI 779
           LYLSSEVIKIFGSDPSCA+YL NLIEALF  TTCLL +I EFT+RPD+ADDCFLLASRCI
Sbjct: 721 LYLSSEVIKIFGSDPSCANYLKNLIEALFSHTTCLLKNIREFTARPDIADDCFLLASRCI 780

Query: 780 RYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDS 839
           RYCPQLFIPS+VFPSLVDCSMIG+TVQHREASNSILTFLSDIFDLAK+  GE++ S+RD+
Sbjct: 781 RYCPQLFIPSAVFPSLVDCSMIGVTVQHREASNSILTFLSDIFDLAKTSPGEQYQSIRDT 840

Query: 840 VIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTAL 899
           VIIPRGASITRILIA LTGALPSSRLETVTYALLALTRAYG++++EWAK+ +SL+PLTA+
Sbjct: 841 VIIPRGASITRILIACLTGALPSSRLETVTYALLALTRAYGMKAVEWAKDCISLVPLTAV 900

Query: 900 AEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPV 958
            EVER+RFLQ LS  A+G D+N     +EELSDVCRRNRTVQEIVQGAL+P ELN  PV
Sbjct: 901 TEVERTRFLQTLSNVATGADINTLTVSMEELSDVCRRNRTVQEIVQGALRPHELNLAPV 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449440732\|ref\|XP_004138138.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356562787\|ref\|XP_003549650.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|255540833\|ref\|XP_002511481.1\| transportin, putative [Ricinus communis] gi\|223550596\|gb\|EEF52083.1\| transportin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356562789\|ref\|XP_003549651.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356512770\|ref\|XP_003525089.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356512772\|ref\|XP_003525090.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|297797229\|ref\|XP_002866499.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi\|297312334\|gb\|EFH42758.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357146633\|ref\|XP_003574061.1\| PREDICTED: transportin-3-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		959
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.993	0.994	0.733	0.0
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.526	0.547	0.242	1.8e-69
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.526	0.547	0.236	3.4e-69
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.500	0.520	0.246	4.7e-69
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.526	0.547	0.235	8.8e-69
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.526	0.543	0.236	4.2e-68
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.428	0.446	0.253	7.6e-67
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.428	0.429	0.253	1.9e-64
FB\|FBgn0031456		932	Trn-SR "Transportin-Serine/Arg	0.891	0.917	0.243	8.2e-60
POMBASE\|SPBC11G11.07		955	mtr10 "karyopherin, nuclear im	0.923	0.927	0.231	1.7e-50

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3592 (1269.5 bits), Expect = 0., P = 0.
 Identities = 701/956 (73%), Positives = 795/956 (83%)

Query:     1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
             ME QN VKEALNALYHHPDD VR+ ADRWLQ+FQ T+DAWQVADNLLHD++SNLETLIFC
Sbjct:     1 MEHQNAVKEALNALYHHPDDTVRVHADRWLQNFQGTLDAWQVADNLLHDSSSNLETLIFC 60

Query:    61 SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
             SQTLRSKVQRD EELP  A + L+ SL TLLKKFHKGPPKVRTQISIAVAALAVH+ A D
Sbjct:    61 SQTLRSKVQRDFEELPPGAFQKLRQSLTTLLKKFHKGPPKVRTQISIAVAALAVHVPAAD 120

Query:   121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
             WG GGI++WLRDEM+ HPE+VPGFLELLTVLPEE FNYKIAARP+RRRQFEKELTSQME 
Sbjct:   121 WGDGGIISWLRDEMHMHPEYVPGFLELLTVLPEETFNYKIAARPDRRRQFEKELTSQMEA 180

Query:   181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
             ALS L+ACL I+ELKEQVLEAFASWLRL+H IPG+VLA HPLV  ALSSL+ + LSEASV
Sbjct:   181 ALSILSACLKISELKEQVLEAFASWLRLRHGIPGTVLACHPLVHAALSSLNCDPLSEASV 240

Query:   241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
             NVISELIH++A+ SSGG +   PLIQVIVPQI+SL+AHL DSSKDEEDVKAI RLFAD+G
Sbjct:   241 NVISELIHHTASPSSGGISAQTPLIQVIVPQILSLQAHLRDSSKDEEDVKAIGRLFADVG 300

Query:   301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
             DSYVELIATGSDE M+IVHALLEV +HPE+DIASMTFNFWHSLQ++LTKR+SY S G+EA
Sbjct:   301 DSYVELIATGSDEPMVIVHALLEVTAHPEFDIASMTFNFWHSLQLMLTKRESYSSLGSEA 360

Query:   361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAA 420
             S E ER+RRL +F+ AY+SLVSLV FRVQYP+DYQ LS EDLKEFK TRYAVADVLIDAA
Sbjct:   361 SIEVERNRRLHIFQPAYQSLVSLVGFRVQYPEDYQGLSYEDLKEFKQTRYAVADVLIDAA 420

Query:   421 SVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMA 480
              +LGGD TLKILY+K +E  A  GN   +WRPAEA LFCI AIS YVSVVEAEVMPQVMA
Sbjct:   421 LILGGDTTLKILYMKLLEANAQTGNNFQDWRPAEAILFCIWAISNYVSVVEAEVMPQVMA 480

Query:   481 XXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXX 540
                          T CL +GAYSKW +AA +  SIL S++ IL SGM TSED        
Sbjct:   481 LLQNLPQQAQLLQTACLLVGAYSKWLNAAPASVSILPSIIRILMSGMGTSEDCAAAAALA 540

Query:   541 FRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 600
             FRH CDDCRK LCGY + L+N+Y  A+NG G  KVSAEDSL+LVEAL MV+TELP   AK
Sbjct:   541 FRHTCDDCRKNLCGYFEDLFNIYCMAINGGGGYKVSAEDSLNLVEALGMVVTELPLDQAK 600

Query:   601 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRL 660
              ALE LC    +PL+E      E L+KKH R+LTVHIDRFA++FRYVNHPEAVA  I + 
Sbjct:   601 GALEKLCFSAASPLEEAAK---EDLEKKHARELTVHIDRFAFLFRYVNHPEAVAAEINKH 657

Query:   661 WPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFL 720
             W IF+ IFD R WDMRTMESLCRACKYAVRTS R++  TIG +LE+IQ  YQQH QPCFL
Sbjct:   658 WAIFRVIFDARPWDMRTMESLCRACKYAVRTSGRYIIDTIGEMLEKIQFHYQQHHQPCFL 717

Query:   721 YLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR 780
             YLSSEVIKIFGSDPSCA YL NLIE LF  TTCL+TSI+E T+RPD+ADDCFLLASRC+R
Sbjct:   718 YLSSEVIKIFGSDPSCAVYLKNLIETLFAHTTCLMTSIKEVTARPDIADDCFLLASRCLR 777

Query:   781 YCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSV 840
             YCP LFIPS +FP+LV+C+MIGITVQHREA +SILTFL+DIFDL KS   E+F+ +RD++
Sbjct:   778 YCPHLFIPSPIFPALVNCAMIGITVQHREACHSILTFLTDIFDLEKSVNEEQFVRIRDNI 837

Query:   841 IIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALA 900
             IIPRGA+ITRILIASL GALPSSRL+TVTY+LLALTR Y ++++ WAKESVSLIP TAL 
Sbjct:   838 IIPRGATITRILIASLAGALPSSRLDTVTYSLLALTRTYRLQAVSWAKESVSLIPRTALT 897

Query:   901 EVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRV 956
             E E ++FLQALS+ A G DVN+ +  VEELSDVCRRNRTVQE+VQ ALKPLELN V
Sbjct:   898 ETESTKFLQALSDIAYGADVNSLIGQVEELSDVCRRNRTVQELVQAALKPLELNLV 953

GO:0005634 "nucleus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

POMBASE\|SPBC11G11.07 mtr10 "karyopherin, nuclear import receptor Mtr10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016179001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (960 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		959
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	5e-18
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	2e-05
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	0.001

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 98  PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157
           P  +R ++++A+A LA      +W        L   ++S P      L +L VLPEE+F+
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPT--FFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHR 211
           + +     +RR + +  L SQM   L  L   L  +     EL    L+   SWL     
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS---W 115

Query: 212 IPGSVLASHPLVLTALSSLHSEILSEASVNVI 243
           IP  ++ + PL+      L    L EA+V  +
Sbjct: 116 IPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		959
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.97
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.92
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.91
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.83
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.81
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.77
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.7
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.69
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.63
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.36
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.28
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.19
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.03
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.91
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.84
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	98.51
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.31
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.25
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.0
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.98
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.96
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.78
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.51
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.32
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.28
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.17
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.57
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	96.53
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.26
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.1
PTZ00429		746	beta-adaptin; Provisional	95.82
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.58
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.51
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	95.29
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.12
PTZ00429		746	beta-adaptin; Provisional	94.67
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.36
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	94.06
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	94.03
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.91
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	93.73
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.45
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.07
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	92.97
KOG2081		559	consensus Nuclear transport regulator [Intracellul	92.94
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.92
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	92.41
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	92.26
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	92.02
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.97
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.8
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	91.65
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	90.57
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	90.26
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	88.66
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	87.99
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.91
KOG2256		661	consensus Predicted protein involved in nuclear ex	86.4
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	85.26
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	85.2
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	84.69
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	83.76
KOG0212		675	consensus Uncharacterized conserved protein [Funct	83.02
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	82.39
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	82.36
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.26
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	82.23
KOG2753		378	consensus Uncharacterized conserved protein, conta	81.96
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.68

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.3e-95  Score=795.36  Aligned_cols=896  Identities=20%  Similarity=0.318  Sum_probs=753.3

Q ss_pred             Cch--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChh
Q 002148            1 MEL--QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE   78 (959)
Q Consensus         1 ~~~--~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~   78 (959)
                      |+.  ++.|++++..+|++++++.+..+++||++.|+|+.+|++.++|++. ++..++|||||.||+.||+++|++++++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~   79 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPAN   79 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence            445  8999999999999999999999999999999999999999999985 7888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhhHHHHhccc
Q 002148           79 AVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVL  151 (959)
Q Consensus        79 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~--~~-----~~~~~~L~~L~~l  151 (959)
                      ++..|+..++..+..++.||+.|.||+|.++|.+.+++.++.||+  .+.+++..+..  +|     ..+..+|+.|+.+
T Consensus        80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~  157 (982)
T KOG2022|consen   80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFM  157 (982)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence            999999999999999998999999999999999999999999999  88999888765  33     2478999999999


Q ss_pred             ccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HhHHHHHHHHHHHHhccCCCCCcccccch
Q 002148          152 PEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHP  221 (959)
Q Consensus       152 ~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~~~~~~~~~~~  221 (959)
                      |+|..+.++  +..+|..++.++......+..++..++...          -....+++|+.+|+.+. +.+  ......
T Consensus       158 p~e~q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~--~~~c~~  232 (982)
T KOG2022|consen  158 PAEFQHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLT--GMDCDQ  232 (982)
T ss_pred             cHhhhhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-ccc--cccHHH
Confidence            999987654  456788999999999999999888887753          24678999999999963 233  234445


Q ss_pred             hHHHHHhcCC--CCchHHHHHHH---------------HHHHHhhhc-cCCCCCCCCchhHHHHHHHHHHh----hHHHh
Q 002148          222 LVLTALSSLH--SEILSEASVNV---------------ISELIHYSA-AGSSGGATVNMPLIQVIVPQIMS----LKAHL  279 (959)
Q Consensus       222 ll~~~~~~L~--~~~~~~~a~~~---------------l~~ii~~~~-~~~~~~~~~~~~~~~~l~~~v~~----l~~~l  279 (959)
                      +++.++..++  .+...+++-+|               ....+..+. ..++    .....+..++.++.+    ..+..
T Consensus       233 i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~  308 (982)
T KOG2022|consen  233 ITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEE  308 (982)
T ss_pred             HHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666665554  11112222111               111111111 0000    112223333333221    11223


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCC------chHHHHHHHHHhhccCC-----CcchhhhhHHhHHHhHHHHh
Q 002148          280 TDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILT  348 (959)
Q Consensus       280 ~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~------~~~~~~l~~ll~~~~~~-----~~~v~~~~l~fW~~l~~~~~  348 (959)
                      .+++..+|....+++++++.+|++.+.+.++.      +.+.++++.++.|++.|     ++.+|..++.||+.|.+++.
T Consensus       309 e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~  388 (982)
T KOG2022|consen  309 ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIM  388 (982)
T ss_pred             hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHH
Confidence            33343467778999999999999988776432      24779999999999988     46789999999999999875


Q ss_pred             hcccccccCcccchHHHHHHHHhhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHHHHHhhHHHHHhhhccCh
Q 002148          349 KRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYAVADVLIDAASVLGG  425 (959)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~  425 (959)
                      ...      ++..     ..+...|+ |+|.+|+++++.|+.+|.+  +..|+.|++|.|++||++++|+++++|.++| 
T Consensus       389 ~~~------~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilg-  456 (982)
T KOG2022|consen  389 QTI------NETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILG-  456 (982)
T ss_pred             Hhh------hccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            321      1111     11233455 9999999999999999974  6679999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCC---CcHHHHHHHHHHHHhh
Q 002148          426 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQLLQTVCLTIGAY  502 (959)
Q Consensus       426 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp---~~~~v~~t~~~~ig~y  502 (959)
                      +.++..+++.+.++...+..++.+|...|+|+|++.++++.+..++++.++.+|+...+.+   .+|.+..|+..+||.|
T Consensus       457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~  536 (982)
T KOG2022|consen  457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL  536 (982)
T ss_pred             HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence            7899999999999876554346789999999999999999999999999999999987654   2899999999999999


Q ss_pred             hhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHH
Q 002148          503 SKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH  582 (959)
Q Consensus       503 ~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~  582 (959)
                      +.|++.||.   ++++.++.+++|+++++ ....|...+.+||++|+.+|.||.++|+..+..+++..   ...+.++.+
T Consensus       537 s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~---~~~~S~~~k  609 (982)
T KOG2022|consen  537 SNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS---NAKDSDRLK  609 (982)
T ss_pred             HHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc---ccCchHHHH
Confidence            999999997   89999999999999888 78888888999999999999999999999999998863   578899999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCc------------
Q 002148          583 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP------------  650 (959)
Q Consensus       583 l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------------  650 (959)
                      +|.+||++++.+.+|++.+|+.++++|+++.++.++......+  .....++..+.+++++|.++..+            
T Consensus       610 lm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~--e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~  687 (982)
T KOG2022|consen  610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ--ENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQR  687 (982)
T ss_pred             HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHHHHHHhccCCCCccccccchhhh
Confidence            9999999999999999999999999999999999876544322  22334566789999999998632            


Q ss_pred             ------ccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhhcCCcchhHhH
Q 002148          651 ------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLYQQHQQPCFLYLS  723 (959)
Q Consensus       651 ------~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~L~l~  723 (959)
                            .|++.+.++++|+++.++..|-++.+++|++|.+..++++..++.+ .|++|+++.++++ |.+.+...-+.+.
T Consensus       688 ~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~  766 (982)
T KOG2022|consen  688 EEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLI  766 (982)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHH
Confidence                  2678899999999999999999999999999999999999877766 7999999999998 9888888889999


Q ss_pred             HHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC-cCChHHHHH-HHHH
Q 002148          724 SEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-SSVFPSLVD-CSMI  801 (959)
Q Consensus       724 ~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~-s~~l~~~~~-~~~~  801 (959)
                      .+++..+..++.+.+.+...+...++.++.++++. .+.++||+...++.++..++++.|+.+.+ ...+.+++. |++.
T Consensus       767 ~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~  845 (982)
T KOG2022|consen  767 AACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFI  845 (982)
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHH
Confidence            99999999888899999998988889988888853 37899999999999999999999998887 445777765 9999


Q ss_pred             hccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhH
Q 002148          802 GITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGV  881 (959)
Q Consensus       802 ~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~  881 (959)
                      .+..+++.+.+++++||+.+++.+++.+    ...+.+++.+.|+.++.+++.+++|..+|+.++.+||+|+++.++|+.
T Consensus       846 ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~s  921 (982)
T KOG2022|consen  846 LLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFS  921 (982)
T ss_pred             hcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhH
Confidence            9999999999999999999987765422    345889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002148          882 RSLEWAKESV--SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN  937 (959)
Q Consensus       882 ~~~~wl~~~l--~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~r~~  937 (959)
                      +++.|+.+++  ++||+.++++++|++|++.|++++  .++|.+++.+.+|+.-||+.
T Consensus       922 e~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~~l  977 (982)
T KOG2022|consen  922 ETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACTGL  977 (982)
T ss_pred             HHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhcCC
Confidence            9999999999  489999999999999999999987  57899999999999999985

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		959
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		5e-28
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		2e-26
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		9e-22

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Iteration: 1

Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 200/949 (21%), Positives = 377/949 (39%), Gaps = 110/949 (11%) Query: 29 WLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88 WL D + + AWQ + L+ S E F + TL SK+ + E+P E L+ + Sbjct: 30 WLTDAEASPQAWQFSWQLMQLGKSQ-EVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 Query: 89 TLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG--GIVNWLRDEMNSHPEFVPG--- 143 + +F GP V ++ I++ A VH+ E W G ++N +++ P Sbjct: 89 ESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVINTFQNQ--RMPNVSADVQL 145 Query: 144 --FLELLTVLPEE-----------VFNYKIAARPE-------------RRRQFEKELTSQ 177 LE+LT +PEE V +IA R + R ++ E S Sbjct: 146 WIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSN 205 Query: 178 MEVALSTL-TACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 M A+ + T +I E + A L + H+ + + +TA + +E Sbjct: 206 MNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCL 265 Query: 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKA-IARL 295 + VN+I I A V LI++ + + + D ED+ I L Sbjct: 266 KTMVNII---IQPDCHNYPKTAFV---LIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 Query: 296 FADMGDSYVELIATG-----SDESML---IVHALLEVASHP-----EYDIASMTFNFWHS 342 F + + L+ +G + S+L IV +L P E ++M FW+ Sbjct: 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379 Query: 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ--DLSLE 400 LQ D + N+ ++ + + + Y L ++ + + P + S + Sbjct: 380 LQ------DEVFAMSNDE----QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429 Query: 401 DLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCI 460 DL+ F+ R ++D + VL D L+IL E +A W EA ++ Sbjct: 430 DLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSF 488 Query: 461 RAISTYVSVVEAEVMPQVM---AXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILA 517 ++++ + E +P++M A T T+G+Y W +P+ + Sbjct: 489 QSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL---MENPAYIP 545 Query: 518 SVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 577 +++L G+++S + +C DC+ +L Y D L N ++N G +K S Sbjct: 546 PAINLLVRGLNSS--MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT-GRMKNS- 601 Query: 578 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP--RDLTV 635 DS+ L+ ++ +++ L + K L+++ P LQ I K P R T+ Sbjct: 602 -DSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQAD-----SKTPAARIRTI 655 Query: 636 -HIDRFAYIFRYVN---------HP--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 683 ++ + +F +N P + V +QR PIFK I ++ ++ +E+ C Sbjct: 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACS 715 Query: 684 ACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNL 743 A K+A+ + + + I +Q L +S I +F D C + L Sbjct: 716 AMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQL 775 Query: 744 IEALFKRTTCLLTSIEE--FTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSM 800 + + + L S E F++ D + F ++ I+ PQ+ ++ + LV + Sbjct: 776 LREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 Query: 801 IGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGAL 860 G+T+ A + + FL+ +++ + V++ G + + Sbjct: 836 RGMTLPESGAIRNSIQFLTHFVMQSRN------HAHVTEVVLATGEQTLYTAMMCVGYLT 889 Query: 861 PSSRLETVTYALLALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRF 907 P S+++ LLA+ R Y W K +S P + + +++R+ Sbjct: 890 PRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRY 938

PyMOL of 2x1g

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		959
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-141
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-137
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	7e-96
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-81
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	1e-70
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	4e-41
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	9e-16
1qgr_A		876	Protein (importin beta subunit); transport recepto	8e-11
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	1e-09
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-06

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  445 bits (1145), Expect = e-141
 Identities = 189/970 (19%), Positives = 397/970 (40%), Gaps = 80/970 (8%)

Query: 5   NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64
             V++AL+ LY+ P+   +  A +WL   Q +  AW  +  LL       E   F +  L
Sbjct: 24  ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASAL 82

Query: 65  RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGG- 123
             K+ R   ++P++    L+  L T + +F  G   V T++ +A+A+LA+ +  + W   
Sbjct: 83  HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142

Query: 124 -GGIVNWLR--DEMNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQM 178
              +V   +  D            LELLTVLPEE    ++    +   R     E  +  
Sbjct: 143 VADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVF 202

Query: 179 EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238
            +    L      + ++++VL+ F+SW++L+  +         L+  A ++L    L ++
Sbjct: 203 PLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDS 258

Query: 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLF 296
           SV  I   I      S   A   +  +  ++P ++ L+  L  +  + D E    I R+ 
Sbjct: 259 SVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312

Query: 297 ADMGDSYVELIATGSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILT 348
             +G+++   +    +     + +V+ ++     P +       +S+T  FW++LQ  + 
Sbjct: 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372

Query: 349 KRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFK 406
             ++            +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+
Sbjct: 373 SFEAE-----------KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421

Query: 407 HTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTY 466
             R  ++D L+    +LG +  L  LY K    +     +   W+  EA L+  ++I+  
Sbjct: 422 IYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYSWQHTEALLYGFQSIAET 479

Query: 467 VSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 525
           + V  ++V+P ++ L+P++     QL  TV  TIGA S+W    +  P ++ SVL ++  
Sbjct: 480 IDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLVLH 536

Query: 526 GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVE 585
            +   E  + ++    + IC +C+  L  Y   +  V +  +  +          + L++
Sbjct: 537 ALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQ 592

Query: 586 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 645
           AL  +++ L   +  K L  L  P +  L+++  + P    K     +   +        
Sbjct: 593 ALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652

Query: 646 YVNH-----------------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 688
             +H                 P  V   +Q+++ + + +      D + +E++C   + +
Sbjct: 653 ISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKS 712

Query: 689 VRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALF 748
           V+T        +  + E +  +Y    Q   L L+ +++ IF  +P+    +  L   + 
Sbjct: 713 VKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVT 772

Query: 749 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQH 807
             T  L    +     PD+ D    L ++ ++  P LF+   +   ++  C+++ +    
Sbjct: 773 SVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPE 830

Query: 808 REASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLET 867
                +   F +++            +     V+   G  +   ++ ++ G    S ++ 
Sbjct: 831 APTVKASCGFFTELLPRCGE------VESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDC 884

Query: 868 VTYALLALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRFLQALSEAASGVDVNAAMA 925
               L AL +        W KE++     P   L+  ++  F Q +       +      
Sbjct: 885 FADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERV--NKRRVKE 942

Query: 926 PVEELSDVCR 935
            V+E + +CR
Sbjct: 943 MVKEFTLLCR 952

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		959
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.91
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.77
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.76
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.72
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.52
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.52
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.25
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.17
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.97
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.24
2x19_B		963	Importin-13; nuclear transport, protein transport;	98.12
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.1
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.1
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.0
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.78
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.77
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.55
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.45
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.34
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.24
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.23
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.19
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.18
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.88
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.81
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.72
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.72
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.69
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	96.6
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.58
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.58
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.36
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.43
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.42
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.97
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.24
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	93.81
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	93.39
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	92.57
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	92.42
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.07
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	91.97
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	90.67
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	90.49
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	89.28
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	88.67
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	88.41
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	87.63
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	87.5
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	86.67
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	85.8
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	85.53
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	85.5
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	84.96
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	84.46
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	83.87
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	81.59

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

Probab=100.00  E-value=9.5e-92  Score=886.97  Aligned_cols=887  Identities=20%  Similarity=0.344  Sum_probs=732.5

Q ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148            4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (959)
Q Consensus         4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l   83 (959)
                      +++|+++++++| ++|++.|++|++||++||++|++|.+|.+||.. +.+.++|||||++|+++|+++|+.++++++..+
T Consensus         6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i   83 (971)
T 2x1g_F            6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL   83 (971)
T ss_dssp             -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence            567999999977 568889999999999999999999999999986 678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCchhhHHHHhcccccccc
Q 002148           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF  156 (959)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~-------~~~~~~~~L~~L~~l~EE~~  156 (959)
                      |+.|++++.+...+++.||+|+|.+++.++.+.+| .||+  +++++.+.+++       ++..+..++++|+.++||+.
T Consensus        84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~  160 (971)
T 2x1g_F           84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ  160 (971)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence            99999999997666899999999999999999998 9999  99999988865       23457899999999999987


Q ss_pred             cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HhHHHHHHHHHHHHhccCCCCCcccccchhHHHH
Q 002148          157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA  226 (959)
Q Consensus       157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~  226 (959)
                      +.+   +..+|..+++.+..+++.|++++.++++..          ++...+++|+.+|+.++ .+|.+  ...++++.+
T Consensus       161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l  234 (971)
T 2x1g_F          161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL  234 (971)
T ss_dssp             HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred             ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence            543   456788889999999999999998887642          57899999999999952 25655  557899988


Q ss_pred             HhcC------------------CCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhh--cCCC-
Q 002148          227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD-  285 (959)
Q Consensus       227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~--~~~d-  285 (959)
                      |+ |                  .+++++++|++|+.++++.++.      .+..+++..+++.++++...+..  .++| 
T Consensus       235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~  307 (971)
T 2x1g_F          235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN  307 (971)
T ss_dssp             HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred             Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence            87 6                  4567899999999999986432      24567888888887776555431  3344 


Q ss_pred             --HHHHHHHHHHHHHhhhHHHHHHh----c----CCchHHHHHHHHHhhccC----C-CcchhhhhHHhHHHhHHHHhhc
Q 002148          286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR  350 (959)
Q Consensus       286 --~e~~~~l~~l~~~~~~~~~~~l~----~----~~~~~~~~l~~ll~~~~~----~-~~~v~~~~l~fW~~l~~~~~~~  350 (959)
                        ++....++++++++++.+...+.    +    .++.+..+++.++.++.+    + +++++..+++||+.+.+.....
T Consensus       308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~  387 (971)
T 2x1g_F          308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM  387 (971)
T ss_dssp             SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence              37888999999999999888776    3    224577899999999877    3 7899999999999998854321


Q ss_pred             ccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHH
Q 002148          351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDAT  428 (959)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~  428 (959)
                      ..    +.      ........++|++.++++.++.|+.||+|  +++||.+|+++|.+||++++|++++++.++| +.+
T Consensus       388 ~~----~~------~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~  456 (971)
T 2x1g_F          388 SN----DE------QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYI  456 (971)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THH
T ss_pred             cc----cc------chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHH
Confidence            00    00      00124568899999999999999999975  4568888889999999999999999999998 678


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCC-C--cHHHHHHHHHHHHhhhhH
Q 002148          429 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--QPQLLQTVCLTIGAYSKW  505 (959)
Q Consensus       429 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp-~--~~~v~~t~~~~ig~y~~~  505 (959)
                      ++.+.+.+.+.+.+...++.+|+.+||++|+++++++++..+..+.++++++.+++++ .  ||.||.++++++|+|++|
T Consensus       457 l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~  536 (971)
T 2x1g_F          457 LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNW  536 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence            8888888887754311114789999999999999999998877788999999777766 3  999999999999999999


Q ss_pred             HhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHH
Q 002148          506 FDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVE  585 (959)
Q Consensus       506 l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~e  585 (959)
                      +..||+   ++++++++++.+++ +. |+.+||+||.+||++|+..|.||++.|++.+.++++.+   .++.+++..+++
T Consensus       537 l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~---~~~~~~~~~~~~  608 (971)
T 2x1g_F          537 LMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG---RMKNSDSVRLMF  608 (971)
T ss_dssp             HC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST---TSCHHHHHHHHH
T ss_pred             HhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC---CCChHHHHHHHH
Confidence            999986   89999999999994 66 99999999999999999999999999999999998863   467899999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-----------cccHH
Q 002148          586 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----------PEAVA  654 (959)
Q Consensus       586 ai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~  654 (959)
                      ++|.+++++|.++..+++..++.|+++.++++.++...+  ++........+++|+.+++++..           ++++.
T Consensus       609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~--~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~  686 (971)
T 2x1g_F          609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT--PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL  686 (971)
T ss_dssp             HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C--HHHHHHHHHHHHHHHHHHHHHTC-------------CCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH
Confidence            999999999878888999999999999999987654311  11223456788999999998764           46788


Q ss_pred             HHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCc
Q 002148          655 DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDP  734 (959)
Q Consensus       655 ~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~  734 (959)
                      ++.+++||++..+++.+.++.+++|.+|++++++++++|..+.|++|++++.+...|+..+++|++++++.++..||.++
T Consensus       687 ~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~  766 (971)
T 2x1g_F          687 LVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDE  766 (971)
T ss_dssp             HHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC--
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCc
Confidence            99999999999999998888899999999999999999999999999999999999999999999999999999999987


Q ss_pred             cchHHHHHHHHHHHHHHHHhhcCc--ccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCC-hHHHHHHHHHhccCCCchhH
Q 002148          735 SCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREAS  811 (959)
Q Consensus       735 ~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~-l~~~~~~~~~~l~~~~~~~~  811 (959)
                      .+.+.+.+++..++.+++.++.+.  ++.+++||++++||+|+.++++++|..+++++. +..++++++.+++.+|+++.
T Consensus       767 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~  846 (971)
T 2x1g_F          767 GCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAI  846 (971)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHH
Confidence            788999999999999999988753  246679999999999999999999999999898 99999999999999999999


Q ss_pred             HHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 002148          812 NSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESV  891 (959)
Q Consensus       812 ~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l  891 (959)
                      +++++||..++++..      ..+.+++++.++|+.|+..++.+++|..|++.+++++++|++++.++|+++++||.+++
T Consensus       847 ~s~~~fl~~~i~~~~------~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l  920 (971)
T 2x1g_F          847 RNSIQFLTHFVMQSR------NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLM  920 (971)
T ss_dssp             HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC------chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHh
Confidence            999999999997732      12347889999999999999999999999999999999999999999999999999998


Q ss_pred             h--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002148          892 S--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN  937 (959)
Q Consensus       892 ~--~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~r~~  937 (959)
                      .  .||+.++++++|++|+++|++.+  .++|+||+.+++|+..|||.
T Consensus       921 ~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~~r~~  966 (971)
T 2x1g_F          921 STPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMKTRGL  966 (971)
T ss_dssp             TSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHC-
T ss_pred             cccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHHHcCc
Confidence            5  79988999999999999998753  36999999999999999984

PyMOL of 2x1g

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		959
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	2e-19
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-16
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-15
d1w9ca_		321	a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho	3e-12
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	2e-08
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-06

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.5 bits (226), Expect = 2e-19
 Identities = 94/871 (10%), Positives = 248/871 (28%), Gaps = 114/871 (13%)

Query: 11  LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQR 70
              L      +    ++R L+  +          +++      L T +  +   ++ ++R
Sbjct: 8   AKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKR 67

Query: 71  DVEE------LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG 124
              +      LP+  V  ++     ++      P  ++ QI  A++++A     + W   
Sbjct: 68  KWVDENGNHLLPANNVELIK---KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--P 122

Query: 125 GIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV-FNYKIAARPERRRQFEKELTSQMEVAL 182
            +++ L   +++       G L +   + +     ++        +      T+     L
Sbjct: 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLL 182

Query: 183 STLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            T+   +  NE  +  L      L +  ++               +        E ++ V
Sbjct: 183 KTVDEQITANENNKASLNILFDVLLVLIKL-----------YYDFNCQDIPEFFEDNIQV 231

Query: 243 ISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302
              + H                +    P ++        +S   +   +I  L       
Sbjct: 232 GMGIFHK--------------YLSYSNP-LLEDPDETEHASVLIKVKSSIQELVQLYTTR 276

Query: 303 YVELIATGSDESM-LIVHALLEVASHPEYD-IASMTFNFWHSLQVILTKRDSYISFGNEA 360
           Y ++     +E + +  + L  +++ P+YD + S + +F  ++  I    + + +     
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMN 336

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAA 420
           +   +        R     L              + +  +       TR       +   
Sbjct: 337 NITEQIILPNVTLREEDVELFED--------DPIEYIRRDLEGSDTDTRRRACTDFLKEL 388

Query: 421 SVLGGDATLKILYIKFVEGV--ACCGNKHNEWRPAEAALFCIRAI-----STYVSVVEAE 473
                     I  +  ++G       +    W+  +  ++   A+      T   V    
Sbjct: 389 KEKNEVLVTNIF-LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTN 447

Query: 474 VMPQVMALLPKL---------PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 524
            +  V+    K               L       I  +           + L  ++ IL 
Sbjct: 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-----TKAQLIELMPILA 502

Query: 525 SGMSTSEDT-AAAAALAFRHICDDC-----------RKKLCGYLDGLYNVYRTAVNGEGS 572
           + + T E      AA+    I               ++ +    + L       +   GS
Sbjct: 503 TFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGS 562

Query: 573 LKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD 632
                 ++  L+ ++  V+          +++ L   ++    EI+    +      PR 
Sbjct: 563 SPEKLAENEFLMRSIFRVLQTSED-----SIQPLFPQLLAQFIEIVTIMAKNPSN--PRF 615

Query: 633 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 692
                +    I  Y    + +   +  + P F  +F     +            Y  +  
Sbjct: 616 THYTFESIGAILNYTQ-RQNLPLLVDSMMPTFLTVFSEDIQEF---------IPYVFQ-- 663

Query: 693 KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLI---EALFK 749
                  I  ++E+   + +  +      L+  V ++ G+ P+    L + I    ++F 
Sbjct: 664 ------IIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFP 717

Query: 750 RTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRE 809
               +L   +   +        F L    +       +       +    ++   +Q+ +
Sbjct: 718 DLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRL-RPYIKQIA--VLLLQRLQNSK 774

Query: 810 ASNSILTFLSDIFDLAKSCKGEEFLSVRDSV 840
               +         ++     +  +   D V
Sbjct: 775 TERYVKKLTVFFGLISNKLGSDFLIHFIDEV 805

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		959
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.97
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.96
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.71
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.37
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.16
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.82
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.81
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.76
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.52
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.7
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.42
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.01
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.89
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.05
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	91.65
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.44
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	90.77
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	80.47

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=370.61  Aligned_cols=743  Identities=13%  Similarity=0.181  Sum_probs=455.2

Q ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148            5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (959)
Q Consensus         5 ~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l   83 (959)
                      +++.+.+.... ++|++.|++|+++|+++++.|+.|..+..++.+ .+.+..+|++|+.+||++|+++|..++++.+..+
T Consensus        11 ~ql~~~L~~~~-s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I   89 (888)
T d1qbkb_          11 QQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI   89 (888)
T ss_dssp             HHHHHHHTTCC-HHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            34444444432 467889999999999999999999998888874 2456679999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhcccccccccccccC
Q 002148           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAA  162 (959)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~l  162 (959)
                      |+.++..+..   .++.||++++.+++.++.+.+++.||+  +++.+.+.+.++ +......+..|..++|+......  
T Consensus        90 k~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~Wpe--ll~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~--  162 (888)
T d1qbkb_          90 KSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD--  162 (888)
T ss_dssp             HHHHTTGGGC---CCSSTTTTTTTTTHHHHTTTSSCSSTT--TSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHH--
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhh--
Confidence            9999987754   567899999999999999888899999  999998877653 33455667777777776432100  


Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHHHH
Q 002148          163 RPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV  240 (959)
Q Consensus       163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~  240 (959)
                              .+......+.++..+.+.++++  .++..+++|+..++..                                
T Consensus       163 --------~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~--------------------------------  202 (888)
T d1qbkb_         163 --------SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS--------------------------------  202 (888)
T ss_dssp             --------TC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGC--------------------------------
T ss_pred             --------HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--------------------------------
Confidence                    0000111112222222222221  2334444444444332                                


Q ss_pred             HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHH
Q 002148          241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA  320 (959)
Q Consensus       241 ~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~  320 (959)
                               ...       .....+..+++.+..   .  ..+.+.+..+..++.++.+.+.++..+.   ++...+++.
T Consensus       203 ---------~~~-------~~~~~~~~~l~~l~~---~--~~~~~~~vr~~~~~~l~~l~~~~~~~l~---~~l~~i~~~  258 (888)
T d1qbkb_         203 ---------RTQ-------ALMLHIDSFTENLFA---L--AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIVEY  258 (888)
T ss_dssp             ---------CCS-------TTCSHHHHCSHHHHT---T--SSCCCSSSTTHHHHTTTTTSCSCTTTTT---TTTTTTTTT
T ss_pred             ---------hhH-------HHHHHHHHHHHHHHH---h--cCCcchHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHH
Confidence                     110       000111111121111   0  0122223334455555555544443332   234456777


Q ss_pred             HHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCC-------
Q 002148          321 LLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD-------  393 (959)
Q Consensus       321 ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d-------  393 (959)
                      ++..+..+++++...+++||..+.+....                    ...+.+++.+++..++..+.|++.       
T Consensus       259 ~l~~~~~~~e~v~~~a~ef~~~~~e~~~~--------------------~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  318 (888)
T d1qbkb_         259 MLQRTQDQDENVALEACEFWLTLAEQPIC--------------------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKG  318 (888)
T ss_dssp             TTTTTTSSCHHHHHHHHHHHCCCCSGGGG--------------------TTTTTTSTTTTTTTTTTSSCCSSTTHHHHTT
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHHHHHHhhcchHHHHHHhh
Confidence            78888888999999999999877643211                    111222333333333343433320       


Q ss_pred             ---------------------------------CCCCChh-------hhHHHHHHHHHhhHHHHHhhhccChHHHHHHHH
Q 002148          394 ---------------------------------YQDLSLE-------DLKEFKHTRYAVADVLIDAASVLGGDATLKILY  433 (959)
Q Consensus       394 ---------------------------------~~~~~~d-------~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~  433 (959)
                                                       ...++++       +.......|+..+.++..++...| +.+++.+.
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-~~il~~~l  397 (888)
T d1qbkb_         319 DVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR-DELLPHIL  397 (888)
T ss_dssp             TSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC-SSSHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH-HHHHHHHH
Confidence                                             0000000       000111246777777777777777 45788888


Q ss_pred             HHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCC
Q 002148          434 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASS  511 (959)
Q Consensus       434 ~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~  511 (959)
                      +.+.+.+.     +.+|+.+|+++++++++++++.....++++++++.+.+ +. ++|.||.++++++|+|++|+.....
T Consensus       398 ~~l~~~l~-----s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         398 PLLKELLF-----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHTTT-----SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHhhc-----cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            88887642     57899999999999999998876656778888887654 43 4899999999999999999976532


Q ss_pred             ChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148          512 DPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV  590 (959)
Q Consensus       512 ~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v  590 (959)
                       ..++.++++.++..+.++ .+|+.+|+.||..+++.+...+.||++.+++.+...+..     ....++..++++++.+
T Consensus       473 -~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-----~~~~~~~~~~~al~~l  546 (888)
T d1qbkb_         473 -DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTL  546 (888)
T ss_dssp             -HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHHH
T ss_pred             -hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Confidence             136677888887777654 349999999999999999999999999999999888764     4677888899999999


Q ss_pred             HhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCc-ccHH-HHHHHHhHHHHHH
Q 002148          591 ITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP-EAVA-DAIQRLWPIFKAI  667 (959)
Q Consensus       591 i~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~-~~~~~~~~~l~~i  667 (959)
                      +......- ...+++.++.++.+.+......         .......+++++.+...+... .|.. ++++.++.++...
T Consensus       547 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  617 (888)
T d1qbkb_         547 ADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE---------DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKT  617 (888)
T ss_dssp             HHHHGGGGCSHHHHHHHHHHHHHHHTTSCTT---------CTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHH
Confidence            87755432 2356666666665543332111         122345678888888776532 1111 1222222222211


Q ss_pred             HHhhcccHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHH
Q 002148          668 FDIRAWDMRTMESLCRACKYAVRTS-KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA  746 (959)
Q Consensus       668 l~~~~~~~~i~e~~~~~l~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~  746 (959)
                      +..             .   ..... +......-..++            .+.+++++.++..+|..  ..+.+...  .
T Consensus       618 l~~-------------~---~~~~~~~~~~~~~~~~~~------------~~~l~~l~~l~~~l~~~--~~~~~~~~--~  665 (888)
T d1qbkb_         618 LAQ-------------A---MLNNAQPDQYEAPDKDFM------------IVALDLLSGLAEGLGGN--IEQLVARS--N  665 (888)
T ss_dssp             HHH-------------H---HHHHHCTTTSCCCCTHHH------------HHHHHHHHHHHHHHTTT--THHHHHTS--C
T ss_pred             HHH-------------H---HHHhcccccccchhHHHH------------HHHHHHHHHHHHHhhhh--hhhhhhHh--h
Confidence            100             0   00000 000000000000            11234556666666654  22222110  0


Q ss_pred             HHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcC
Q 002148          747 LFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAK  826 (959)
Q Consensus       747 l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~  826 (959)
                      +.......+.     +..+++++..|.+++.+.+.++..+.+  .++.++...+.++..........++..+..+....+
T Consensus       666 l~~~l~~~l~-----~~~~~vr~~a~~llgdl~~~~~~~~~~--~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~  738 (888)
T d1qbkb_         666 ILTLMYQCMQ-----DKMPEVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG  738 (888)
T ss_dssp             HHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHhC-----CCChHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            1111222232     456889999999999999988876644  678888888888876666666667776666654321


Q ss_pred             CCCchhhHHHHHHHHhhccHHHHHHHHHHcc-cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH----hhCCCCCCCH
Q 002148          827 SCKGEEFLSVRDSVIIPRGASITRILIASLT-GALPSSRLETVTYALLALTRAYGVRSLEWAKESV----SLIPLTALAE  901 (959)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~-~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l----~~~p~~~~~~  901 (959)
                                  +-+.++.+.++..++..+. ...+++..++++.+|..+...+|+.+..++.+++    ..++... +.
T Consensus       739 ------------~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~-d~  805 (888)
T d1qbkb_         739 ------------IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DN  805 (888)
T ss_dssp             ------------GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC-CS
T ss_pred             ------------HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC-Cc
Confidence                        1133455566666666663 2456777899999999999999977654444332    3445322 45


Q ss_pred             HHHHHHHHHHH
Q 002148          902 VERSRFLQALS  912 (959)
Q Consensus       902 ~~~~~f~~~l~  912 (959)
                      ++|+.-...+.
T Consensus       806 ~ek~~~~~g~~  816 (888)
T d1qbkb_         806 EEKDSAFRGIC  816 (888)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55655444433

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure