Citrus Sinensis ID: 002156
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.915 | 0.616 | 0.324 | 1e-102 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.419 | 0.381 | 0.397 | 8e-76 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.475 | 0.459 | 0.312 | 3e-42 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.360 | 0.356 | 0.364 | 1e-41 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.423 | 0.414 | 0.311 | 8e-40 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.452 | 0.439 | 0.314 | 6e-39 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.379 | 0.279 | 0.253 | 3e-10 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.456 | 0.417 | 0.265 | 1e-09 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.456 | 0.417 | 0.265 | 1e-09 | |
| P23799 | 630 | Putative adenylate cyclas | N/A | no | 0.369 | 0.561 | 0.262 | 3e-09 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 327/1007 (32%), Positives = 480/1007 (47%), Gaps = 129/1007 (12%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA+ +G+ FR+E + RH S+ CD F + +
Sbjct: 487 MHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEF 542
Query: 61 LRTFLPVTLSNSSRG-HLAYSIL-PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLN 118
LRT LP S L +L P L L LR SL Y I LP S+ L+ LRYL+
Sbjct: 543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLD 602
Query: 119 LSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLG 178
LS T I+ LPE V L NL TLLL +CR+L L + LI L + T L EMP G
Sbjct: 603 LSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMPPG 661
Query: 179 IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKN 238
I KL LQ L NFV+G+ SG+GL ELK L HLRG L IS+L+NV AK+A L K
Sbjct: 662 IKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721
Query: 239 LKELLLRWTRS----TDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDS 294
L L+L+WT GS + A + VL ML+PH +L+ FCI+ Y+G FP WLGDS
Sbjct: 722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDS 781
Query: 295 SFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFY---GNDPPIPFPC 351
SF + ++ +C +C +LP +GQLPSLK+L++ + ++++G +F+ N +PF
Sbjct: 782 SFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841
Query: 352 LETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEG 411
L+ L F M W++WI G+ FP L++L I RC L+ FPE LP+ + I
Sbjct: 842 LQILKFYGMPRWDEWICPELEDGI---FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISD 898
Query: 412 CEELSV---------SVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCR-------- 454
C +V S++ +P I + S TG+ S S +
Sbjct: 899 CPLRAVSGGENSFRRSLTNIPE-SPASIPSMSRRELSSPTGNPKSDASTSAQPGFASSSQ 957
Query: 455 -DASNQVFLVGPLKPQLPKLEELEIID------------MKEQTYIWKSHNGLLQDISSL 501
+ N+V LPK + E D +E I ++G + DI S
Sbjct: 958 SNDDNEVTSTS-SLSSLPKDRQTEDFDQYETQLGSLPQQFEEPAVISARYSGYISDIPS- 1015
Query: 502 KRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLR-- 559
T++ SLV + + + + S +Y G + V P+SS ++ +
Sbjct: 1016 ---TLSPYMSRTSLVPDPK--NEGSILPGSSSYQYHQY-GIKSSVPSPRSSEAIKPSQYD 1069
Query: 560 ----EIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSC 615
++ K + + E LP L+ ++I CD L SLPE + ++ +L L I +C
Sbjct: 1070 DDETDMEYLKVTDISHLME--LPQNLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIAC 1126
Query: 616 HSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHI-ESCL 674
HSL F G P +LK L I C + L E +Q + S S+ LE+L I SC
Sbjct: 1127 HSLESFPGSHPPTTLKTLYIRDC---KKLNFTESLQPTRSYSQ------LEYLFIGSSCS 1177
Query: 675 SLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERL---DNNTSLEIISIG 731
+L P +L P L+SL + +C ++ + D+ +LE + I
Sbjct: 1178 NLV------NFPLSLF--------PKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIR 1223
Query: 732 SCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGL 791
C NL+ P +GGLP KL + + C++L+ALP+ L
Sbjct: 1224 DCPNLETFP------------------------QGGLPTPKLSSMLLSNCKKLQALPEKL 1259
Query: 792 HNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGR-GFHGFSSLR 850
LTSL L I + E+ ++ G P+NL++L I + + R G +LR
Sbjct: 1260 FGLTSLLSLFIIKCPEIETI-PGGGFPSNLRTL----CISLCDKLTPRIEWGLRDLENLR 1314
Query: 851 RLEIRGCDDDMVSFP----LPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCRKL 905
LEI G ++D+ SFP LP S+ SL IS F NL+ L+ D + + + + C KL
Sbjct: 1315 NLEIDGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKL 1374
Query: 906 KYFPKKGLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQID 952
+ + LP L L I C L+ E + +++ +L +IP V+ID
Sbjct: 1375 QISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEID 1419
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 250/428 (58%), Gaps = 26/428 (6%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHD IN+LAQ+A+GE + E ++ SE R+LSY+ + FE L +++
Sbjct: 492 MHDFINELAQFASGEFSSKFEDGCKLQ----VSERTRYLSYLRDNYAEPMEFEALREVKF 547
Query: 61 LRTFLPVTLSNSSRG-----HLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYL 114
LRTFLP++L+NSSR ++ +LP L RLR SL Y I LP D ++ +
Sbjct: 548 LRTFLPLSLTNSSRSCCLDQMVSEKLLPTL---TRLRVLSLSHYKIARLPPDFFKNISHA 604
Query: 115 RYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEE 174
R+L+LS T + LP+S+ +YNL TLLL C LK+L D+ NLI L + + T L +
Sbjct: 605 RFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQ 663
Query: 175 MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234
MP G+L LQTL F V GS +SEL L L G L+I +L+ V DV +A EA L+
Sbjct: 664 MPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLN 723
Query: 235 GKKNLKELLLRW----TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTW 290
KK+L+E+ W + S + ++ + E V + L+PH ++E+ I+ Y+G +FP W
Sbjct: 724 SKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDW 783
Query: 291 LGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGN------D 344
L D SFS +V ++ + C CT+LPS+GQLP LK L + GM ++ +G +FY +
Sbjct: 784 LSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQ 843
Query: 345 PPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPAL 404
PF LETL F+N+ +W++W+ ++G + FP L++L ILRC +L GT P LP+L
Sbjct: 844 DQQPFRSLETLRFDNLPDWQEWLDVRVTRG--DLFPSLKKLFILRCPELTGTLPTFLPSL 901
Query: 405 EMLVIEGC 412
L I C
Sbjct: 902 ISLHIYKC 909
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 183/586 (31%), Positives = 261/586 (44%), Gaps = 130/586 (22%)
Query: 48 GVKRFEDL-YDIQHLRTFLPVTLSNSSRGHLAYSILPKLFK-LQRLRAFSLRGYHIFELP 105
VK ED+ + + + + + + S + S P LFK LR +L +LP
Sbjct: 497 NVKDDEDMMFIVTNYKDMMSIGFS-----EVVSSYSPSLFKRFVSLRVLNLSNSEFEQLP 551
Query: 106 DSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCREL-------KKLCADMGNL 158
S+GDL +LRYL+LSG I +LP+ + KL NL TL L +C+ L KLC+ + NL
Sbjct: 552 SSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCS-LRNL 610
Query: 159 IKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISK 218
+ H L MP IG LTCL+TL FVVG+ G L EL+ L +LRGA+ I+
Sbjct: 611 VLDHC-------PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITH 662
Query: 219 LENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFC 278
LE VK+ AKEA L K NL L + W R +R E+ VL+ LKPH NL+
Sbjct: 663 LERVKNDMEAKEANLSAKANLHSLSMSWDR-----PNRYESEEVKVLEALKPHPNLKYLE 717
Query: 279 IKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGS 338
I + G P W+ S N+V++ C C+ LP G+LP L+ L ++
Sbjct: 718 IIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQ---------- 767
Query: 339 EFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFP 398
D + +E F R FP LR+LHI LKG
Sbjct: 768 -----DGSVEVEYVEDSGFLTRRR----------------FPSLRKLHIGGFCNLKG--- 803
Query: 399 EHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASN 458
+ ++G E+ P L +++I C V+
Sbjct: 804 -------LQRMKGAEQ-------FPVLEEMKISDCPMFVF-------------------- 829
Query: 459 QVFLVGPLKPQLPKLEELEIIDMKEQTYIW-KSHNGLLQDISSLKRLT---IASCPKLQS 514
P L +++LE IW ++ G L IS+L LT I S + S
Sbjct: 830 ---------PTLSSVKKLE---------IWGEADAGGLSSISNLSTLTSLKIFSNHTVTS 871
Query: 515 LVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE 574
L+ E K+ + L YL++S + L +LP S SL++L+ + I C +L S PE
Sbjct: 872 LLEEMFKNLEN--------LIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPE 923
Query: 575 VALP--SKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSL 618
L S L ++ + HC+ LK LPE T +L L I C L
Sbjct: 924 EGLEGLSSLTELFVEHCNMLKCLPEGLQHLT--TLTSLKIRGCPQL 967
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 198/387 (51%), Gaps = 41/387 (10%)
Query: 79 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138
+ LP L K LR +L +LP SIGDL +LRYLNL G+ +R+LP+ + KL NL
Sbjct: 516 FYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQ 575
Query: 139 TLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG 198
TL L+ C +L L + L L + + SL MP IG LTCL+TL FVVG+ G
Sbjct: 576 TLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKG 635
Query: 199 SGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREA 258
L EL L +L G+++IS LE VK+ +AKEA L K NL L + W G E+
Sbjct: 636 YQLGELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNF--GPHIYES 692
Query: 259 ETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQ 318
E E+ VL+ LKPH+NL I G+ G+ P W+ S N+V++ N C+ LP G
Sbjct: 693 E-EVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGD 751
Query: 319 LPSLKHLTVR-GMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVV- 376
LP L+ L + G + V+ + E D FP + F ++R+ + W GS +G++
Sbjct: 752 LPCLESLELHWGSADVEYV--EEVDIDVHSGFPT--RIRFPSLRKLDIW-DFGSLKGLLK 806
Query: 377 ----EGFPKLRELHILRC-------------------SKLKGTFPE----HLPALEMLVI 409
E FP L E+ I C +K+ +FPE +L L+ L I
Sbjct: 807 KEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTI 866
Query: 410 EGC---EELSVSVSRLPALCKLQIGGC 433
C +EL S++ L AL L+I C
Sbjct: 867 SRCNNLKELPTSLASLNALKSLKIQLC 893
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 163/524 (31%), Positives = 233/524 (44%), Gaps = 118/524 (22%)
Query: 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT-HIRALPESVNKLYNLHTLLLE 143
L K LR +LR ++ +LP SIGDL +LRYL+LSG IR LP+ + KL NL TL L
Sbjct: 521 LQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLH 580
Query: 144 DCRELK---KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSG 200
C L K + +G+L L S T + P IG LTCL++L FV+GK G
Sbjct: 581 YCDSLSCLPKQTSKLGSLRNLLLDGCSLTST----PPRIGLLTCLKSLSCFVIGKRKGHQ 636
Query: 201 LSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAET 260
L ELK L +L G++ I+KL+ VK +AKEA L K NL L L W DG ++E
Sbjct: 637 LGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW--DLDGKHRYDSE- 692
Query: 261 EMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLP 320
VL+ LKPH+NL+ I G+ G++ P W+ S N+V+++ + C C+ LP G+LP
Sbjct: 693 ---VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELP 749
Query: 321 SLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFP 380
L+ L + S ++ ED + G FP
Sbjct: 750 CLESLELHTGS--------------------------ADVEYVEDNVHPGR-------FP 776
Query: 381 KLRELHILRCSKLKGTFP----EHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKV 436
LR+L I S LKG + P LE + C + P L ++ KV
Sbjct: 777 SLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVI-----PTLSSVK---TLKV 828
Query: 437 VWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQ 496
+ AT V R SN L L L+I D E T
Sbjct: 829 IVTDAT---------VLRSISN-----------LRALTSLDISDNVEAT----------- 857
Query: 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLS 556
S P +++ + L+YL +S + L +LP S SL+
Sbjct: 858 -----------SLP--------------EEMFKSLANLKYLKISFFRNLKELPTSLASLN 892
Query: 557 SLREIVIYKCSSLVSFPEVALP--SKLKKINIWHCDALKSLPEA 598
+L+ + C +L S PE + + L ++++ +C LK LPE
Sbjct: 893 ALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEG 936
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 225/487 (46%), Gaps = 53/487 (10%)
Query: 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLED 144
L K LR +L + +LP SIGDL +LRYL+LS + R+LPE + KL NL TL + +
Sbjct: 523 LKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHN 582
Query: 145 CRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSEL 204
C L L L L H L P IG LTCL+TL F+VG G L EL
Sbjct: 583 CYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGEL 641
Query: 205 KLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGV 264
K L +L G++ I+ LE VK+ +A EA L K NL+ L + W DG + E++ E+ V
Sbjct: 642 KNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW--DNDGPNRYESK-EVKV 696
Query: 265 LDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKH 324
L+ LKPH NL+ I + G +FP+W+ S +++++ K+C C LP G+LP L++
Sbjct: 697 LEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLEN 756
Query: 325 LTVR-GMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLR 383
L ++ G + V+ + E +D S S++ FP L+
Sbjct: 757 LELQNGSAEVEYV-------------------------EEDDVHSRFSTR---RSFPSLK 788
Query: 384 ELHILRCSKLKGTFPEH----LPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWE 439
+L I LKG E P LE + I C L ++ KL++ G
Sbjct: 789 KLRIWFFRSLKGLMKEEGEEKFPMLEEMAILYCPLFVFPT--LSSVKKLEVHGNTNTRGL 846
Query: 440 SATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDIS 499
S+ +L + S+ L + L LE L D K + S L ++
Sbjct: 847 SSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLPTS----LTSLN 902
Query: 500 SLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLR 559
+LKRL I SC L+S +Q E L L + C+ L LP+ L++L
Sbjct: 903 ALKRLQIESCDSLESF--------PEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALT 954
Query: 560 EIVIYKC 566
+ + C
Sbjct: 955 NLGVSGC 961
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 184/426 (43%), Gaps = 62/426 (14%)
Query: 545 LVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTN 604
L KL + +L L SL+E+ + ++L P+++L L+++++ C +L +LP +
Sbjct: 602 LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLPSS--IQNA 659
Query: 605 SSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSL 664
+ L L +S C L F SL+ L++ C N+R + + CS + +
Sbjct: 660 TKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIK-MGCSDVDFPEGRNEI 718
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEVGN-------LPPSLKSLGVFECSKLESIAE 717
+ +E C F LPA L+ L+ P L L V K E + E
Sbjct: 719 V----VEDC------FWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNV-RGYKHEKLWE 767
Query: 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777
+ + SLE + + NL +P L +L+ + + NC +LV+ P +L+RLE
Sbjct: 768 GIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLE 826
Query: 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPS------------LEEE--DGLPTNLQS 823
+ C LE LP + NL+SL+ L + L S LE + +P+ + +
Sbjct: 827 MKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGN 885
Query: 824 LDIWGNIEIWK-SMIERGRGFHGFSSLRRLEIRGCDDDMVSFPL---------------- 866
L +E+ K + +E SSL L++ GC + SFPL
Sbjct: 886 LHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGC-SSLRSFPLISESIKWLYLENTAIE 944
Query: 867 -------PASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLR 919
+L +L+++ +L L ++I +LQ L + C L+ P SSL+
Sbjct: 945 EIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLSSLMI 1004
Query: 920 LWIEGC 925
L + GC
Sbjct: 1005 LDLSGC 1010
|
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 229/542 (42%), Gaps = 104/542 (19%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKRFEDLYDIQ 59
+HD++ ++ A E F +S + S S R L Y +Y + +D+ D +
Sbjct: 498 LHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVY--QYPITLDVEKDINDPK 555
Query: 60 HLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIF--ELPDSIGDLRYLRY 116
LR+ + V + G ++ +L F +L+ LR + + +L SIG L +LRY
Sbjct: 556 -LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRY 614
Query: 117 LNLSGTHIRALPESVNKL-----YNLHTL---------LLEDCRELKKLC--ADMGNLIK 160
LNL + +P S+ L NL L +L++ ++L+ L DMG K
Sbjct: 615 LNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTK 674
Query: 161 LHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG-ALEISKL 219
L N L L+TL NF L +L+ ++ LR +E+ K
Sbjct: 675 LELSN----------------LVKLETLKNFST---KNCSLEDLRGMVRLRTLTIELRKE 715
Query: 220 ENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHT-NLEQFC 278
+++ + A + G K L+ L T + GS R E + V D + T L+ +
Sbjct: 716 TSLETLA----ASIGGLKYLESL----TITDLGSEMRTKEAGI-VFDFVYLKTLTLKLYM 766
Query: 279 IKGYEGMKFPTWLGDSSFSNLVTLKFKNCGM-CTALPSMGQLPSLKHLTVRGMSRVKRLG 337
+ + FP S+L TL ++C + +P + +L LK L +R R G
Sbjct: 767 PRLSKEQHFP--------SHLTTLYLQHCRLEEDPMPILEKLHQLKELELR---RKSFSG 815
Query: 338 SEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTF 397
E + FP L+ L + + EWEDW SS P L L I C KLK
Sbjct: 816 KEMVCSSG--GFPQLQKLSIKGLEEWEDWKVEESS------MPVLHTLDIRDCRKLKQLP 867
Query: 398 PEHLPA-LEMLVIEGC---EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVC 453
EHLP+ L + + C E+ ++ RL L +LQ+ ++ S +G + +VC
Sbjct: 868 DEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQL------LFRSFSGRI-----MVC 916
Query: 454 RDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQ 513
G PQL KL+ E+ ++E W +G + L L I CPKL+
Sbjct: 917 ---------AGSGFPQLHKLKLSELDGLEE----WIVEDG---SMPQLHTLEIRRCPKLK 960
Query: 514 SL 515
L
Sbjct: 961 KL 962
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 229/542 (42%), Gaps = 104/542 (19%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKRFEDLYDIQ 59
+HD++ ++ A E F +S + S S R L Y +Y + +D+ D +
Sbjct: 498 LHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVY--QYPITLDVEKDINDPK 555
Query: 60 HLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIF--ELPDSIGDLRYLRY 116
LR+ + V + G ++ +L F +L+ LR + + +L SIG L +LRY
Sbjct: 556 -LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRY 614
Query: 117 LNLSGTHIRALPESVNKL-----YNLHTL---------LLEDCRELKKLC--ADMGNLIK 160
LNL + +P S+ L NL L +L++ ++L+ L DMG K
Sbjct: 615 LNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTK 674
Query: 161 LHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG-ALEISKL 219
L N L L+TL NF L +L+ ++ LR +E+ K
Sbjct: 675 LELSN----------------LVKLETLKNFST---KNCSLEDLRGMVRLRTLTIELRKE 715
Query: 220 ENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHT-NLEQFC 278
+++ + A + G K L+ L T + GS R E + V D + T L+ +
Sbjct: 716 TSLETLA----ASIGGLKYLESL----TITDLGSEMRTKEAGI-VFDFVYLKTLTLKLYM 766
Query: 279 IKGYEGMKFPTWLGDSSFSNLVTLKFKNCGM-CTALPSMGQLPSLKHLTVRGMSRVKRLG 337
+ + FP S+L TL ++C + +P + +L LK L +R R G
Sbjct: 767 PRLSKEQHFP--------SHLTTLYLQHCRLEEDPMPILEKLHQLKELELR---RKSFSG 815
Query: 338 SEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTF 397
E + FP L+ L + + EWEDW SS P L L I C KLK
Sbjct: 816 KEMVCSSG--GFPQLQKLSIKGLEEWEDWKVEESS------MPVLHTLDIRDCRKLKQLP 867
Query: 398 PEHLPA-LEMLVIEGC---EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVC 453
EHLP+ L + + C E+ ++ RL L +LQ+ ++ S +G + +VC
Sbjct: 868 DEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQL------LFRSFSGRI-----MVC 916
Query: 454 RDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQ 513
G PQL KL+ E+ ++E W +G + L L I CPKL+
Sbjct: 917 ---------AGSGFPQLHKLKLSELDGLEE----WIVEDG---SMPQLHTLEIRRCPKLK 960
Query: 514 SL 515
L
Sbjct: 961 KL 962
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 174/393 (44%), Gaps = 39/393 (9%)
Query: 470 LPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 529
LP+L L + QT + + LK L I+SC ++ L A
Sbjct: 229 LPQLTSLSLC----QTNVTDKDLRCIHPDGKLKMLDISSCHEITDLTAIGGVRS------ 278
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHC 589
LE L+LSGC + K + S+LRE+ I C L S + LK +++ +C
Sbjct: 279 ----LEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAVVLKNLINLKVLSVSNC 334
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEG 649
K L + +LE L +S CH ++ G V +LK+LDI C+ +L +G
Sbjct: 335 KNFKDLNGL---ERLVNLEKLNLSGCHGVSSLGFVANLSNLKELDISGCE---SLVCFDG 388
Query: 650 IQCSSSSSRRYTSSLLEHLHIESCLSLTCI----FSKNELPATLESLEVGNLPPSLKSLG 705
+Q ++ Y + ++ + +L+ + S E +L LE L+ L
Sbjct: 389 LQDLNNLEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCERITSLSGLET---LKGLEELS 445
Query: 706 VFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSF-P 764
+ C ++ S + + + L ++ + CGNL+ L SGL L L+E+ + C +F P
Sbjct: 446 LEGCGEIMSF-DPIWSLYHLRVLYVSECGNLEDL-SGLQCLTGLEEMYLHGCRKCTNFGP 503
Query: 765 EGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSL 824
L + LE+ CE L+ L GL LT L+EL + E+ ++ G+ NL++L
Sbjct: 504 IWNLR--NVCVLELSCCENLDDLS-GLQCLTGLEELYLIGCEEITTI----GVVGNLRNL 556
Query: 825 DIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857
W + ++ G +L +L++ GC
Sbjct: 557 KCLST--CWCANLKELGGLERLVNLEKLDLSGC 587
|
May be involved in the postranscriptional regulation of genes in VSG expression sites. Trypanosoma brucei brucei (taxid: 5702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | ||||||
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.939 | 0.632 | 0.419 | 1e-178 | |
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.900 | 0.622 | 0.418 | 1e-169 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.937 | 0.633 | 0.405 | 1e-161 | |
| 356554923 | 1399 | PREDICTED: putative disease resistance R | 0.897 | 0.615 | 0.391 | 1e-151 | |
| 147766392 | 1471 | hypothetical protein VITISV_007674 [Viti | 0.900 | 0.587 | 0.379 | 1e-147 | |
| 224059584 | 1418 | cc-nbs-lrr resistance protein [Populus t | 0.942 | 0.637 | 0.387 | 1e-144 | |
| 225450023 | 1396 | PREDICTED: putative disease resistance p | 0.909 | 0.624 | 0.382 | 1e-143 | |
| 225450019 | 1394 | PREDICTED: putative disease resistance p | 0.901 | 0.620 | 0.376 | 1e-143 | |
| 359487416 | 1472 | PREDICTED: putative disease resistance p | 0.901 | 0.587 | 0.382 | 1e-143 | |
| 451798992 | 1440 | disease resistance protein At3g14460-lik | 0.907 | 0.604 | 0.381 | 1e-143 |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 409/974 (41%), Positives = 558/974 (57%), Gaps = 73/974 (7%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDLI DLAQW AG YFR+E + N+Q S RHLS++ DG K+FE + + +H
Sbjct: 491 MHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAISEFKH 550
Query: 61 LRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNL 119
LRTFLP+ +L+Y I+ +L KLQ LR SL GY I LP +IGDL++LRYL+L
Sbjct: 551 LRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDL 610
Query: 120 SGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGI 179
S T +R+LP S++ LYNL TLLLE+C LK L D G L L H N ++ LE MPL I
Sbjct: 611 SCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSI 670
Query: 180 GKLTCLQTLCNFVVGK-DSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKN 238
G L+ LQTL NFVVGK DS + EL L+HLRG L ISKLENV A+++ L GK++
Sbjct: 671 GNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLYGKQD 730
Query: 239 LKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSN 298
L E+++ W S++ + S++ ET++ VL+ML+P+ L++ +K Y G KFPTW+GD SFSN
Sbjct: 731 LNEVVMEW--SSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSN 788
Query: 299 LVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFE 358
LV L+F+NC C +LP +GQLP LK L ++GM+ VK +G EFYG PF LETL FE
Sbjct: 789 LVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFE 848
Query: 359 NMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVS 418
+M W +WI GV E F L +L I+RC L P+HLP+L+ LVI GC + VS
Sbjct: 849 DMPRWVNWI----PLGVNEAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVS 904
Query: 419 VSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEI 478
VS LP LC L I GCK+V ES+ G GS S+ S L + K+E L+I
Sbjct: 905 VSNLPMLCVLVIEGCKRVECESSVG-FGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKI 963
Query: 479 IDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLT 538
+D ++ T +W+ L + L+ L+I CP L S A L+ +
Sbjct: 964 VDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPAS----------GFPSMLKVIQ 1013
Query: 539 LSGCQGLVK-LPQSSLSL---SSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKS 594
+ C GL LP+ +L + L + + +C S+ S LP+ LKK+ I HC L+
Sbjct: 1014 IKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQ- 1072
Query: 595 LPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSS 654
C + + S H + L+ LDI SC ++ TLT
Sbjct: 1073 ------CVLDEGEGSSSSSGMHDEDINNRSK--THLQYLDIKSCPSLTTLT--------- 1115
Query: 655 SSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLES 714
SS + ++ L HL + C L C+ S +LPA L+ LE+ ++ SKL+
Sbjct: 1116 -SSGKLPAT-LTHLLLRECPKLMCLSSTGKLPAALQYLEIQSI------------SKLQK 1161
Query: 715 IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLM 774
IAERL NTSLE I I +C LK LP LHNL +L++ I+ C + SFP GLP + L
Sbjct: 1162 IAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLP-SNLR 1220
Query: 775 RLEIYGCERLEALPKGLHNLTSLQELRIGRGVE-LPSLEEEDGLPTNLQSLDIWGNIEIW 833
L I C+ L+ALP G+ NLTSLQ+L I ++ LPS +E GLPTNL L++ +++ +
Sbjct: 1221 VLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQE--GLPTNLIELNM-HDLKFY 1277
Query: 834 KSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP----------LPASLTSLEISFFPNLER 883
K M E G +SL +L I G D+ S+P LP SL+ L IS+F NLE
Sbjct: 1278 KPMFE--WGLQQPTSLIKLSIHGECLDVDSYPGERENGVMMLLPNSLSILCISYFQNLEC 1335
Query: 884 LS-SSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIEEKCRKDGGQYWDL 942
LS +L L +L++Y+C KL PK+GLP SL +L I CPL+ + C + GQ W
Sbjct: 1336 LSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSK 1395
Query: 943 LTHIPRVQIDLKWV 956
+ HIP V ID K++
Sbjct: 1396 IAHIPCVLIDNKFI 1409
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 414/990 (41%), Positives = 555/990 (56%), Gaps = 126/990 (12%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLR------HLSYIPEYCDGVKRFED 54
MHDLI DLA+WAAGEI FR+E +KQ E LR H SYI DGVKRFE
Sbjct: 491 MHDLIGDLARWAAGEICFRLE-----DKQNDDGEQLRCFPKARHSSYIRGLSDGVKRFEV 545
Query: 55 LYDIQHLRTFLPV---TLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDL 111
++++LRTFLP+ + N +A+ +LPKL Q LR S Y I ELPDSIGDL
Sbjct: 546 FSELKYLRTFLPLRKDSFWNYLSRQVAFDLLPKL---QYLRVLSFNCYKITELPDSIGDL 602
Query: 112 RYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDS 171
RYLRYL+LS T I +LP+S + LYNL TL+LE C +LK L DM NL+ L H NNSN
Sbjct: 603 RYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHLNNSNVSL 662
Query: 172 LEEMPLGIGKLTCLQTLCNFVVG---KDSGSGLSELKLLMHLRGALEISKLENVKDVGNA 228
LE+MP +G+L LQ+L FVV SG+ EL+ LMHLRG L IS+LENV DV +A
Sbjct: 663 LEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLENVTDVEDA 722
Query: 229 KEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFP 288
+ A L+ K+ L L+L W+ S+D ETE VLDML+PHT L++ IK Y G +F
Sbjct: 723 QRANLNCKERLDSLVLEWSHSSDTR-----ETESAVLDMLQPHTKLKELTIKSYAGKEFS 777
Query: 289 TWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIP 348
+W+G FSN+V ++ + C C +LP +G+LP LK L +RGM+ V+ +G+EFYG + +P
Sbjct: 778 SWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYG-ECSLP 836
Query: 349 FPCLETLLFENMREWEDWISHGSS-QGVVEGFPKLRELHILRCSKLKGTFPEHLPALEML 407
FP LETL F +M+ W+ W+ + +G V FP L+ L + +CSKL+G PE+L +L L
Sbjct: 837 FPLLETLEFVDMQHWKVWLPFQTDHRGSV--FPCLKTLLVRKCSKLEGKLPENLDSLASL 894
Query: 408 VIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFL-VGPL 466
I CEEL VS++ L +L I GCK VV +A S+ + S L G L
Sbjct: 895 EIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSLQTGEL 954
Query: 467 -KPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEE---EKD 522
+ L + +L+I +E T K+ LLQ + SL RL I SL+ EE E D
Sbjct: 955 CRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIED----NSLLVEELGKEAD 1010
Query: 523 QQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLK 582
+ QL L C+LE+L L C+ L+KLP+ LSSL+E+ I++CSSLVSFP+V LP LK
Sbjct: 1011 ELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLK 1070
Query: 583 KINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIR 642
I I+ CHSL YF Q+P++L+++ I C ++R
Sbjct: 1071 DIE--------------------------ITECHSLIYFAKSQIPQNLRRIQIRDCRSLR 1104
Query: 643 TLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLK 702
+L E + SSSS + LE+L+IE C SLT + ++L +L+
Sbjct: 1105 SLVDNEAVGSCSSSSH----NCLEYLNIERCQSLTLLSLSDQLVR------------ALR 1148
Query: 703 SLGVFECSKLESIAER--LDNNTS--LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCG 758
L +++C +LE +A NNT+ LE I C NLK LP
Sbjct: 1149 ELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNLKSLPR----------------- 1191
Query: 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP 818
GG+ + L + I C+RLEALP+ +HN SL++L I L P
Sbjct: 1192 -----LSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTC-----SFP 1241
Query: 819 TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP---------LPAS 869
NL SL IW ++ KS+ E G H +SLR L I G D DMVSFP LP S
Sbjct: 1242 ANLTSLMIW-KVKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLPKS 1300
Query: 870 LTSLEISFFPNLERLSSSIVDLQILT---ELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926
LT L I FPNL++LSS Q LT L L+ C KL PK+GLP SL L I GCP
Sbjct: 1301 LTELSIGGFPNLKKLSSK--GFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCP 1358
Query: 927 LIEEKCRKDGGQYWDLLTHIPRVQIDLKWV 956
+++E+C+ G+YW ++HIP + ID K +
Sbjct: 1359 VLKERCQPGKGRYWHKISHIPYIDIDWKMI 1388
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 395/973 (40%), Positives = 553/973 (56%), Gaps = 74/973 (7%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDLINDLAQ+ + EI F +E + + N++ +FS ++RH S+ + ++FED Y ++
Sbjct: 499 MHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKN 558
Query: 61 LRTFL--PVTLSNSSRGHL----AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 114
LRTFL P+ + HL ++ +LPKL + LR SL Y I ELP+SIGDL++L
Sbjct: 559 LRTFLALPIHMQYYDFFHLTDKVSHDLLPKL---RYLRVLSLSHYEIRELPNSIGDLKHL 615
Query: 115 RYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEE 174
RYLNLS T I+ LP+S++ L+NL TL+L CR L +L NLI L H + ++T LE
Sbjct: 616 RYLNLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEV 675
Query: 175 MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234
MP +GKL LQTL F+VGK G+ EL L+HLRG L I L+NV D+ +A++A L
Sbjct: 676 MPPQMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLK 735
Query: 235 GKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDS 294
K +L+ELL+ W+ + S E E+ VL L+P+TNL++ I+ Y G+ FP W+GD
Sbjct: 736 DKHHLEELLMEWSSNMFDDSQNET-IELNVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDP 794
Query: 295 SFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPI---PFPC 351
SFS +V L+ C CT LPS+G+L SLK L V+GM VK +G EFYG +P + PFP
Sbjct: 795 SFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYG-EPSLCVKPFPS 853
Query: 352 LETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEG 411
LE L FE+M EWE+W S E +P+LREL I C KL P HLP+L L I
Sbjct: 854 LEFLRFEDMPEWEEWCSS-------ESYPRLRELEIHHCPKLIQKLPSHLPSLVKLDIID 906
Query: 412 CEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLP 471
C +L + LP L L + C + + S G L S ++ + SN FL L L
Sbjct: 907 CPKLVAPLPSLPFLRDLIVAECNEAMLRSG-GDLTSLITLRLENISNLTFLNEGLVRFLG 965
Query: 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELS 531
LE LEI + E ++ +S G +++S ++ L I CPKL L+AE++ L
Sbjct: 966 ALEVLEICNCSELKFLLQSGVG-FENLSCIRHLVIVMCPKL-VLLAEDQP--------LP 1015
Query: 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDA 591
C LEYL ++ C L KLP SL+SLRE+ I KC L S E+ P L + ++ C+
Sbjct: 1016 CNLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEG 1075
Query: 592 LKSLPEAWMCDTNSS----LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVE 647
L+SLP+ M + + LE L I C SL F +LP LK+L+I+ C +++L
Sbjct: 1076 LESLPDGMMINGENRNFCLLECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP-- 1133
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
EG+ + LE L I C L+ F + LP+T++ LE+ N
Sbjct: 1134 EGLILGDHTCH------LEFLRIHRCPLLSS-FPRGLLPSTMKRLEIRN----------- 1175
Query: 708 ECSKLESIAERLDNNTSLEIISIGSCGNLKILPSG-LHNLCQLQEIEIWNCGNLVSFPEG 766
C +LESI+ L ++T+LE + I LKI SG LH+L L E+ I++C L SFPE
Sbjct: 1176 -CKQLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFPER 1230
Query: 767 GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDI 826
G L L I C+ L++LP + + TSL++LRI L S EE GL NL S I
Sbjct: 1231 GFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEE-GLSLNLTSFWI 1289
Query: 827 WGNIEIWKSMIERGRGFHGFSSLRRLEIRG----CDDDMVSFP-LPASLTSLEISFFPNL 881
+ + + G HG +SL+ I CD D S P LP +LT L IS F NL
Sbjct: 1290 RNCKNLKMPLYQ--WGLHGLTSLQTFVINNVAPFCDHD--SLPLLPRTLTYLSISKFHNL 1345
Query: 882 ERLSS-SIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDGGQY 939
E LSS + +L L L +Y C KL+ F PK+GL ++L L I+ CP+IE +CRK+ G+
Sbjct: 1346 ESLSSMGLQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIEARCRKNKGED 1405
Query: 940 WDLLTHIPRVQID 952
W +++HIPR+ +D
Sbjct: 1406 WPMISHIPRIDMD 1418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 390/997 (39%), Positives = 545/997 (54%), Gaps = 136/997 (13%)
Query: 1 MHDLINDLAQWAAGEIYFRME--YTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDI 58
MHDLINDLAQW AGE F+++ + S K++ S+ R+ SY+ DG++ F+ +
Sbjct: 493 MHDLINDLAQWVAGESCFKLDNNFQSHKQKKKKISKMTRYASYVGGEYDGIQMFQAFKEA 552
Query: 59 QHLRTFLPVTLSNSSR-----GHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 113
+ LRTFLP+ H+ + +LP+L + LRA SL GY I +LP+S+ +L
Sbjct: 553 KSLRTFLPLKHRRLEEWSYITNHVPFELLPEL---RCLRALSLSGYFISKLPNSVSNLNL 609
Query: 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLE 173
LRYLNLS T +R LPES+ L NL TLLL DC L++L ++M +LI L H + + + SL
Sbjct: 610 LRYLNLSSTDLRQLPESICSLCNLQTLLLRDCFNLEELPSNMSDLINLRHLDITRSHSLT 669
Query: 174 EMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 233
MP GIGKLT LQTL NFVVG SG+ EL L ++RG L +S+LE+V D A EA +
Sbjct: 670 RMPHGIGKLTHLQTLSNFVVG---SSGIGELMKLSNIRGVLSVSRLEHVTDTREASEAMI 726
Query: 234 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGD 293
+ K + L L+WT + S E E VL ML+PH NL + IK Y G FP W+GD
Sbjct: 727 NKKVGIDVLKLKWTSCMNNQSHTERAKE--VLQMLQPHKNLAKLTIKCYGGTSFPKWIGD 784
Query: 294 SSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLE 353
S+ +LV LK K+C CT+LP++G L +LK L + GM V + EF GN PFP LE
Sbjct: 785 PSYKSLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVCCIDGEFCGNACLRPFPSLE 844
Query: 354 TLLFENMREWEDW-ISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC 412
L F +M +WE+W +S + Q + F L++L I++C KL G PE+LP+L+ ++++ C
Sbjct: 845 RLYFMDMEKWENWFLSDNNEQN--DMFSSLQQLFIVKCPKLLGKLPENLPSLKHVIVKEC 902
Query: 413 EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPK 472
E+L V++S LP L KL+I GCK +V A S NS+ FL+ L
Sbjct: 903 EQLLVTISSLPVLYKLEIEGCKGLVLNCA-NEFNSLNSMSVSRILEFTFLMERLVQAFKT 961
Query: 473 LEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSC 532
+EEL+I+ SC
Sbjct: 962 VEELKIV---------------------------------------------------SC 970
Query: 533 RLEYLTLSGC-QGLVKLPQSSLSLSS-LREIVIYKCSSLVSFPEVALPSK--LKKINIWH 588
L+ L+ V L ++ LSS LR I I C+ + S P+V + + L+++ I H
Sbjct: 971 ALDETVLNDLWVNEVWLEKNPHGLSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYICH 1030
Query: 589 CDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEE 648
CD S+ + QLP SLK L+I +C N+R L ++
Sbjct: 1031 CD--------------------------SIVFVTMDQLPHSLKSLEISNCKNLRCL-LDN 1063
Query: 649 GIQCSSSS------SRRYTSSLLEHL---HIESCLSLTCIFSKNELPATLESLEV----- 694
G C+SSS + ++ S+++ HL +I C SLTCI ELP +++ L +
Sbjct: 1064 G-TCTSSSIIMHDDNVQHGSTIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSE 1122
Query: 695 -------GNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLC 747
G LP S++ L + C KLESIA RL NTSLE I I +C NLK LP GLH L
Sbjct: 1123 LSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLV 1182
Query: 748 QLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVE 807
L+EI+I C NLVSFPE GLP + L L I CE+L ALP ++NL SL+EL IG
Sbjct: 1183 NLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGY--- 1239
Query: 808 LPSLE--EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDM---- 861
PS++ E P NL SL I + ++M G + S LR L I G + M
Sbjct: 1240 CPSIQYFPEINFPDNLTSLWI-NDHNACEAMF--NWGLYKLSFLRDLTIIGGNLFMPLEK 1296
Query: 862 VSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRL 920
+ LP++LTSL + FP+LE LSS L L++L +Y+C KL P+KGLPSSLL L
Sbjct: 1297 LGTMLPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLEL 1356
Query: 921 WIEGCPLIEEKCRKDGGQYWDLLTHIPRVQIDLKWVF 957
+I+ CP ++E+CRKD G+ W + +P V+ID K+++
Sbjct: 1357 YIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIY 1393
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 371/978 (37%), Positives = 522/978 (53%), Gaps = 114/978 (11%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA++ GEI F +E E N+QQ+ S+ RH S+I D K+FE Y +++
Sbjct: 505 MHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGSYDVFKKFEAFYGMEN 564
Query: 61 LRTFLPVTLSNSSRGH--LAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYL 117
LRTF+ + + ++S G+ L+ +L L KL+RLR SL Y I E+P SIGDL++LRYL
Sbjct: 565 LRTFIALPI-DASWGYDWLSNKVLEGLMPKLRRLRVLSLSTYRISEIPSSIGDLKHLRYL 623
Query: 118 NLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPL 177
NLS T ++ LP+S+ LYNL TL+L +C +L +L + NL L H + +NT+ LEEMPL
Sbjct: 624 NLSRTKVKWLPDSLGNLYNLETLILSNCSKLIRLALSIENLNNLRHLDVTNTN-LEEMPL 682
Query: 178 GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKK 237
I KL LQ L F+VGKD+G + EL+ + HL+ L IS LENV +V +A++A L+ K+
Sbjct: 683 RICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQDGLCISNLENVANVQDARDASLNKKE 742
Query: 238 NLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFS 297
L+EL + W+ D S A ++ VLD L+PH NL + I Y G +FP W+GD SFS
Sbjct: 743 KLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIGYYGGPEFPPWIGDVSFS 800
Query: 298 NLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND--PPIPFPCLETL 355
+V + NC CT+LP +G LP LKH+ + G++ VK +G EFYG P PFP LE+L
Sbjct: 801 KMVDINLVNCRNCTSLPCLGWLPMLKHVRIEGLNEVKIVGREFYGETCLPNKPFPSLESL 860
Query: 356 LFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEEL 415
F M +WEDW S + E +P L L I+ C KL P +LP+L L I+ C +
Sbjct: 861 SFSAMSQWEDW----ESPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHLSIDTCPQW 916
Query: 416 SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEE 475
+ RLP+L KL++G C + V S L S + L L L+
Sbjct: 917 VSPLERLPSLSKLRVGDCNEAVLRSGL-ELPSLTELRIERIVGLTRLHEGCMQLLSGLQV 975
Query: 476 LEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 535
L+I E T +W+ NG +++L +SCP+L SL E+EK + L +L+
Sbjct: 976 LDIDRCDELTCLWE--NGF----DGIQQLQTSSCPELVSL-GEKEKHK------LPSKLQ 1022
Query: 536 YLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSL 595
L + C L KLP L+ L E+ IY C LVSFPE+ P L+++ I C+ L+ L
Sbjct: 1023 SLKILRCNNLEKLPNGLHRLTCLGELEIYNCPKLVSFPELGFPPMLRRLVIVSCEGLRCL 1082
Query: 596 PEAWMCDTNSS--------LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVE 647
P+ M + S LE L I C SL F +LP +LKQL I C+ + +L
Sbjct: 1083 PDWMMVMKDGSNNGSDVCLLEYLEIDRCPSLIGFPEGELPTTLKQLRIWECEKLESLP-- 1140
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
G+ S++ TS L L I C SLT G P +LK L ++
Sbjct: 1141 GGMMHHDSNTTTATSGGLHVLEIWDCPSLTF-------------FPTGKFPSTLKKLQIW 1187
Query: 708 ECSKLESIAERL--DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE 765
+C++LESI++ NN+SLE +SI S LKI+P L+
Sbjct: 1188 DCAQLESISKETFHSNNSSLEYLSIRSSPCLKIVPDCLY--------------------- 1226
Query: 766 GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLD 825
KL LEI CE +E LP L NLT+L L I R + + L
Sbjct: 1227 ------KLRELEINNCENVELLPHQLQNLTALTSLGIYRCENIKT------------PLS 1268
Query: 826 IWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-------LPASLTSLEISFF 878
WG +SL++L I G + SF LP +LT L I F
Sbjct: 1269 RWG--------------LATLTSLKKLTIGGIFPRVASFSDGQRPLILPTTLTFLFIQDF 1314
Query: 879 PNLERLSS-SIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDG 936
NL+ LSS ++ L L +L + C KL+ F P++GLP +L RL+I+ CPL++++C K
Sbjct: 1315 QNLKSLSSLALQTLTSLEKLLIEDCPKLESFCPREGLPDTLSRLYIKDCPLLKQRCSKRK 1374
Query: 937 GQYWDLLTHIPRVQIDLK 954
GQ W + HIP V+ID K
Sbjct: 1375 GQDWPNIAHIPYVRIDDK 1392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 375/967 (38%), Positives = 510/967 (52%), Gaps = 63/967 (6%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MH LI+DLAQ AGE + E NK E RH+S+ + ++RF+DL ++
Sbjct: 495 MHHLISDLAQSIAGETCVNLNDKLENNKVFPDPEKTRHMSFTRRTYEVLQRFKDLGKLKR 554
Query: 61 LRTFLPVTLSNS---SRGHLAYSILPK-LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRY 116
LRTF+ + L +S + +L+ ++L + L KL+RLR SL GY I ELP+SIGDL+ LRY
Sbjct: 555 LRTFIALRLYSSPWAAYCYLSNNVLHEALSKLRRLRVLSLSGYCITELPNSIGDLKQLRY 614
Query: 117 LNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMP 176
LN S T I+ LPESV+ L NL TL L CR+L KL GNLI L H + ++TD+L EMP
Sbjct: 615 LNFSQTKIKRLPESVSTLINLQTLKLYGCRKLNKLPQGTGNLIDLCHLDITDTDNLFEMP 674
Query: 177 LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGK 236
+G LT LQ L F VGK G G+ EL+ L +L G L I L NV D +A A L GK
Sbjct: 675 SWMGNLTGLQKLSKFTVGKKEGCGIEELRGLQNLEGRLSIMALHNVIDARHAVHANLRGK 734
Query: 237 KNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSF 296
NL EL L W++S R+ + M VLD L+PHTNL++ I Y G +FP+W+G SF
Sbjct: 735 HNLDELELEWSKSDIKDEDRQHQ--MLVLDSLQPHTNLKELKISFYGGTEFPSWVGHPSF 792
Query: 297 SNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPI-PFPCLETL 355
S +V LK C CT LP +G+LP L+ L ++G+ V+ +G EFYG+ + PFP L+TL
Sbjct: 793 SKIVHLKLSCCRKCTVLPPLGRLPLLRDLCIQGLDAVETVGHEFYGDCSSVKPFPSLKTL 852
Query: 356 LFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEEL 415
FE+M+EW+ W + G E FP L EL + C KL G FP LP+ + I C L
Sbjct: 853 TFEDMQEWKSWSAVGVDGEAEEQFPSLSELTLWNCPKLLGRFPSCLPSCVKITIAKCPML 912
Query: 416 SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEE 475
S +LP L +L++ C +V H S ++ S +L G L L L+
Sbjct: 913 VDSDEKLPVLGELKLEECDEVK-PKCMFHNSSLITLKLGSMSRLTYLKGQLLQSLGALKV 971
Query: 476 LEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 535
L I D + T +W+ GL E Q L E+
Sbjct: 972 LMISDFPKLTSLWQKGTGL----------------------ENFEHPQFVSLTEIGMPST 1009
Query: 536 YLT--LSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDAL 592
+ + LSGC L LP ++ L SL ++ I C +LVS PE L S L+ + + C AL
Sbjct: 1010 HKSSKLSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKAL 1069
Query: 593 KSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQC 652
+SLP+ +N LE L I C SL F G LP +LK L I C +++L E+ +
Sbjct: 1070 RSLPDGM---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP-EDLMHN 1125
Query: 653 SSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKL 712
+ T EHL I C +L+S G LP LK+L +++CS+L
Sbjct: 1126 KNGPG---TLCHFEHLEIIGC-------------PSLKSFPDGKLPTRLKTLKIWDCSQL 1169
Query: 713 ESIAER-LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771
+ ++E L ++ SLE ++I C L P L + L E+ + NC L FP G P A
Sbjct: 1170 KPLSEMMLHDDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPA 1229
Query: 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831
L L IY C+ L++LP + LTSLQEL I L S D +P +L SL+IW
Sbjct: 1230 NLRTLTIYNCKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGD-MPPHLTSLEIWDCDN 1288
Query: 832 IWKSMIERGRGFHGFSSLRRLEIRG-CDDDMVSFP-----LPASLTSLEISFFPNLERLS 885
+ + E + LR I G C VSFP LP +LTS+ I PNLE LS
Sbjct: 1289 LDGCLSEWN--LQSLTCLRDFSIAGGCFSHTVSFPDEKCLLPTNLTSVWIGRLPNLESLS 1346
Query: 886 SSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLLTH 945
+ L L EL + C KLK P+ LP +L R I CPL+ ++C K G YW L++H
Sbjct: 1347 MQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVYWPLISH 1406
Query: 946 IPRVQID 952
IP V+ID
Sbjct: 1407 IPCVEID 1413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 373/976 (38%), Positives = 526/976 (53%), Gaps = 104/976 (10%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA++ GEI F +E E N+QQ+ S+ RH S+I + D K+FE Y +++
Sbjct: 504 MHDLVNDLAKFVGGEICFSLEKNLEGNQQQTISKKARHSSFIRDRYDIFKKFEAFYGMEN 563
Query: 61 LRTFLPVTLSN-SSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLN 118
LRTF+ + + L+ +L L KL+RLR L GY I E+P S+GDL++LRYLN
Sbjct: 564 LRTFIALPIDPLWDYNWLSNKVLEGLMPKLRRLRVLLLSGYRISEIPSSVGDLKHLRYLN 623
Query: 119 LSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLG 178
LS T ++ LP+S+ L+NL TL+L +CR+L +L +GNL L H + +NT+ LEEMP
Sbjct: 624 LSRTKVKRLPDSLGNLHNLETLILSNCRKLIRLPLSIGNLNNLRHLDVTNTN-LEEMPPR 682
Query: 179 IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKN 238
I KL LQ L NF+VGKD+G + EL+ + L+G L ISKLENV +V +A++A L+ K+
Sbjct: 683 ICKLKGLQVLSNFIVGKDNGLNVKELRNMPQLQGGLCISKLENVANVQDARDASLNKKQK 742
Query: 239 LKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSN 298
L+EL + W S + S A + VLD L+PH NL + I+ Y G +FP W+GD SFS
Sbjct: 743 LEELTIEW--SAGLNDSHNARNQKDVLDSLQPHFNLNKLKIEYYGGPEFPPWIGDVSFSK 800
Query: 299 LVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND--PPIPFPCLETLL 356
+V + NC CT+LP +G LP LKH+ + G+ VK +G EFYG P PFP LE+L
Sbjct: 801 MVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLS 860
Query: 357 FENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELS 416
F M +WEDW S + E +P L L I+ C KL P +LP+L I C +L
Sbjct: 861 FSAMSQWEDW----ESPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHFSIGTCPQLV 916
Query: 417 VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEEL 476
+ RLP+L KL++ C + V S L S + L L L+ L
Sbjct: 917 SPLERLPSLSKLRVQDCNEAVLRSGL-ELPSLTELGIDRMVGLTRLHEGCMQLLSGLQVL 975
Query: 477 EIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEY 536
+I + T +W+ NG +++L +SCP+L SL E+EK EL +L+
Sbjct: 976 DIDRCDKLTCLWE--NGF----DGIQQLQTSSCPELVSL-GEKEKH------ELPSKLQS 1022
Query: 537 LTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLP 596
L + C L KLP L+ L E+ IY C LVSFPE+ P L+++ I C+ L+ LP
Sbjct: 1023 LKIRWCNNLEKLPNGLYRLTCLGELEIYDCPKLVSFPELGFPPMLRRLVIHSCEGLRCLP 1082
Query: 597 EAWMCDTNSS--------LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEE 648
+ M + S LE L I +C SL F +LP +LK+L I C+ + +L
Sbjct: 1083 DWMMVMKDGSNNGSDVCLLEYLHIHTCPSLIGFPEGELPTTLKELKIWRCEKLESLP--G 1140
Query: 649 GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708
G+ S++ TS L L I C SLT G P +LK L +++
Sbjct: 1141 GMMHHDSNTTTATSGGLHVLDIWKCPSLTF-------------FPTGKFPSTLKKLEIWD 1187
Query: 709 CSKLESIAERL--DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEG 766
C++LESI++ NN+SLE +SI S LKI+P L+ +L+E+EI NC N+ P
Sbjct: 1188 CAQLESISKETFHSNNSSLEYLSIRSYPCLKIVPDCLY---KLRELEINNCENVELLPHQ 1244
Query: 767 GLPCAKLMRLEIYGCERLEALP---KGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQS 823
L L IY CE ++ +P GL LTSL+EL IG G+ + S
Sbjct: 1245 LQNLTALTSLGIYRCENIK-MPLSRWGLATLTSLKELTIG------------GIFPRVAS 1291
Query: 824 LDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLER 883
FS +R I LP +LT L I F NL+
Sbjct: 1292 ----------------------FSDGQRPPI-----------LPTTLTFLSIQDFQNLKS 1318
Query: 884 LSS-SIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDGGQYWD 941
LSS ++ L L +L + C KL+ F P++GLP +L RL+I CPL++++C K GQ W
Sbjct: 1319 LSSLALQTLTSLEDLWIQRCPKLQSFCPREGLPDTLSRLYITDCPLLKQRCSKGKGQDWP 1378
Query: 942 LLTHIPRVQIDLKWVF 957
+ HIP V+ID K VF
Sbjct: 1379 NIAHIPYVEIDDKNVF 1394
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 369/980 (37%), Positives = 520/980 (53%), Gaps = 115/980 (11%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA++ GEI F +E E N+QQ+ S+ RH S+I D K+FE Y +++
Sbjct: 505 MHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEY 564
Query: 61 LRTFLPVTLSNSSRGH-LAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLN 118
LRTF+ + + S R + L+ +L L KLQRLR SL GY I E+P S+GDL++LRYLN
Sbjct: 565 LRTFIALPIDASWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLN 624
Query: 119 LSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLG 178
LS T ++ LP+S+ L+NL TL+L +C L +L + NL L H + +NT+ LEEM L
Sbjct: 625 LSETGVKRLPDSLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLR 683
Query: 179 IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKN 238
I KL LQ L F+VGKD+G + EL+ + HL+G L IS LENV +V +A++A L+ K+
Sbjct: 684 ICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQK 743
Query: 239 LKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSN 298
L+EL + W+ D S A ++ VLD L+PH NL + I+ Y G +FP W+GD SFS
Sbjct: 744 LEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIEYYGGPEFPRWIGDVSFSK 801
Query: 299 LVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND--PPIPFPCLETLL 356
+V + NC CT+LP +G LP LKH+ + G+ VK +G EFYG P PFP LE+L
Sbjct: 802 MVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLS 861
Query: 357 FENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELS 416
F +M +WEDW S + E +P L L I+ C KL P +LP+L L I C L
Sbjct: 862 FSDMSQWEDW----ESPSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVHLSIWRCPLLV 917
Query: 417 VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEEL 476
V RLP+L KL++ C + V S L S + L L L+ L
Sbjct: 918 SPVERLPSLSKLRVEDCNEAVLRSGL-ELPSLTELGILRMVGLTRLHEWCMQLLSGLQVL 976
Query: 477 EIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEY 536
+I + E +W+ NG + L++L ++C +L SL +E+ EL +L+
Sbjct: 977 DIDECDELMCLWE--NGF----AGLQQLQTSNCLELVSLGKKEKH-------ELPSKLQS 1023
Query: 537 LTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLP 596
L + C L KLP L+ L E+ I C LV FPE+ P L+++ I+ C L LP
Sbjct: 1024 LKIRRCNNLEKLPNGLHRLTCLGELKISNCPKLVLFPELGFPPMLRRLVIYSCKGLPCLP 1083
Query: 597 EAWMCDTNSS--------LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEE 648
+ M + S LE L I C SL F +LP +LK+L I C+N+ +L
Sbjct: 1084 DWMMVMKDGSNNGSDVCLLEYLEIDGCPSLIGFPEGELPATLKELRIWRCENLESLP--G 1141
Query: 649 GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708
GI S++ Y L L+I C SLT G P +LK L +++
Sbjct: 1142 GIMHHDSNTTSYG---LHALYIGKCPSLTF-------------FPTGKFPSTLKKLQIWD 1185
Query: 709 CSKLESIAERL--DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEG 766
C++LE I+E + NN+SLE +SI S LKI+P NC N+
Sbjct: 1186 CAQLEPISEGMFHSNNSSLEYLSIWSYRCLKIVP---------------NCLNI------ 1224
Query: 767 GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDI 826
L LEI CE +E LP L NLT+L L I
Sbjct: 1225 ------LRELEISNCENVELLPYQLQNLTALTSLTI------------------------ 1254
Query: 827 WGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-------LPASLTSLEISFFP 879
+ E K+ + R G +SL++L I G + SF LP +LTSL I F
Sbjct: 1255 -SDCENIKTPLSRW-GLATLTSLKKLTIGGIFPRVASFSDGQRPPILPTTLTSLYIQDFQ 1312
Query: 880 NLERLSS-SIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDGG 937
NL+ LSS ++ L L ELR+ C KL+ F P++GLP ++ +L+ GCPL++++ K G
Sbjct: 1313 NLKSLSSLALQTLTSLEELRIQCCPKLQSFCPREGLPDTISQLYFAGCPLLKQRFSKGKG 1372
Query: 938 QYWDLLTHIPRVQIDLKWVF 957
Q W + +IP V+ID K VF
Sbjct: 1373 QDWPNIAYIPFVEIDYKDVF 1392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487416|ref|XP_002272889.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 374/977 (38%), Positives = 522/977 (53%), Gaps = 112/977 (11%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA+ AGE+ F + E ++ S+ RH S+I D K+FE Y +++
Sbjct: 505 MHDLVNDLAKSVAGEMCFSLAEKLESSQPHIISKKARHSSFIRGPFDVFKKFEAFYRMEY 564
Query: 61 LRTF--LPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYL 117
LRTF LP+ S S R L+ +L L KL RLR SL GY I E+P SIGDL++LRYL
Sbjct: 565 LRTFIALPIDASWSYRW-LSNKVLEGLMPKLWRLRVLSLSGYQISEIPSSIGDLKHLRYL 623
Query: 118 NLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPL 177
NLSGT ++ LP+S+ LYNL TL+L C +L +L + NL L H + ++T+ LEEMPL
Sbjct: 624 NLSGTRVKWLPDSIGNLYNLETLILSYCSKLIRLPLSIENLNNLRHLDVTDTN-LEEMPL 682
Query: 178 GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKK 237
I KL LQ L F+VGKD+G + EL+ + HL+G L IS LENV +V +A++A L+ K+
Sbjct: 683 RICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGELCISNLENVANVQDARDASLNKKQ 742
Query: 238 NLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFS 297
L+EL + W+ D S A ++ VL L+PH NL + I+ Y G +FP W+GD SFS
Sbjct: 743 KLEELTIEWSAGLD--DSHNARNQIDVLGSLQPHFNLNKLKIENYGGPEFPPWIGDVSFS 800
Query: 298 NLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND--PPIPFPCLETL 355
+V + NC CT+LP +G LP LKH+ + G+ VK +G EFYG P PFP LE+L
Sbjct: 801 KMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESL 860
Query: 356 LFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEEL 415
F +M +WEDW S + E +P L L I+ C KL P +LP+L L I GC +
Sbjct: 861 SFSDMSQWEDW----ESPTLSEPYPCLLHLKIVDCPKLIKKLPTNLPSLVHLSILGCPQW 916
Query: 416 SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEE 475
+ RL +L KL++ C + V S L S + L L L+
Sbjct: 917 VPPLERLSSLSKLRVKDCNEAVLRSGL-ELPSLTELRIERIVGLTRLHEGCMQLLSGLQV 975
Query: 476 LEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 535
L+I E T +W+ NG +++L +SCP+L SL E+EK E+ +L+
Sbjct: 976 LDICGCDELTCLWE--NGF----DGIQQLQTSSCPELVSL-GEKEKH------EMPSKLQ 1022
Query: 536 YLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSL 595
LT+SGC L KLP L+ L E+ IY C LVSFPE+ P L+++ I C+ L+ L
Sbjct: 1023 SLTISGCNNLEKLPNGLHRLTCLGELEIYGCPKLVSFPELGFPPMLRRLVIVGCEGLRCL 1082
Query: 596 PEAWMCDTNSS--------LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVE 647
P+ M + S LE L I +C SL F +LP +LKQL I C+ + +L
Sbjct: 1083 PDWMMVMKDGSNNGSDVCLLEYLKIDTCPSLIGFPEGELPTTLKQLRIWECEKLESLP-- 1140
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
G+ S++ TS L L I C SLT F + P+TL+ LE ++
Sbjct: 1141 GGMMHHDSNTTTATSGGLHVLDIWDCPSLT-FFPTGKFPSTLQKLE------------IW 1187
Query: 708 ECSKLESIAERL--DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE 765
+C++LESI+E + NN+SLE +SI S LKI+P L+ +L+E++I C N+ P
Sbjct: 1188 DCAQLESISEEMFHSNNSSLEYLSISSYPCLKIVPDCLY---KLRELKINKCENVELQPY 1244
Query: 766 GGLPCAKLMRLEIYGCERLEA-LPK-GLHNLTSLQELRIGRGVELPSLEEEDG-----LP 818
L L I CE ++ L + GL LTSL++L IG G+ P DG LP
Sbjct: 1245 HLQNLTALTSLTISDCENIKTPLSRWGLATLTSLKKLTIG-GIFPPVASFSDGQRPPILP 1303
Query: 819 TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFF 878
T L L I F SL L ++ +LTSLE
Sbjct: 1304 TTLTLLSI--------------NDFQNLKSLSSLALQ-------------TLTSLE---- 1332
Query: 879 PNLERLSSSIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDGG 937
EL + C KL+ F P++GLP +L RL+I+ CPL++++C K G
Sbjct: 1333 -----------------ELWIRCCPKLESFCPREGLPDTLSRLYIKDCPLLKQRCSKRKG 1375
Query: 938 QYWDLLTHIPRVQIDLK 954
Q W + HIP VQ D K
Sbjct: 1376 QDWPNIAHIPYVQTDDK 1392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451798992|gb|AGF69194.1| disease resistance protein At3g14460-like protein 1 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 375/982 (38%), Positives = 524/982 (53%), Gaps = 112/982 (11%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA+ AGE+ F + E ++ S+ RH S+I D K+FE Y +++
Sbjct: 505 MHDLVNDLAKSVAGEMCFSLAEKLESSQPHIISKKARHSSFIRGPFDVFKKFEAFYRMEY 564
Query: 61 LRTF--LPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYL 117
LRTF LP+ S S R L+ +L L KL RLR SL GY I E+P SIGDL++LRYL
Sbjct: 565 LRTFIALPIDASWSYRW-LSNKVLEGLMPKLWRLRVLSLSGYQISEIPSSIGDLKHLRYL 623
Query: 118 NLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPL 177
NLSGT ++ LP+S+ LYNL TL+L C +L +L + NL L H + ++T+ LEEMPL
Sbjct: 624 NLSGTRVKWLPDSIGNLYNLETLILSYCSKLIRLPLSIENLNNLRHLDVTDTN-LEEMPL 682
Query: 178 GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKK 237
I KL LQ L F+VGKD+G + EL+ + HL+G L IS LENV +V +A++A L+ K+
Sbjct: 683 RICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGELCISNLENVANVQDARDASLNKKQ 742
Query: 238 NLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFS 297
L+EL + W+ D S A ++ VL L+PH NL + I+ Y G +FP W+GD SFS
Sbjct: 743 KLEELTIEWSAGLD--DSHNARNQIDVLGSLQPHFNLNKLKIENYGGPEFPPWIGDVSFS 800
Query: 298 NLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND--PPIPFPCLETL 355
+V + NC CT+LP +G LP LKH+ + G+ VK +G EFYG P PFP LE+L
Sbjct: 801 KMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESL 860
Query: 356 LFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEEL 415
F +M +WEDW S + E +P L L I+ C KL P +LP+L L I GC +
Sbjct: 861 SFSDMSQWEDW----ESPTLSEPYPCLLHLKIVDCPKLIKKLPTNLPSLVHLSILGCPQW 916
Query: 416 SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEE 475
+ RL +L KL++ C + V S L S + L L L+
Sbjct: 917 VPPLERLSSLSKLRVKDCNEAVLRSGL-ELPSLTELRIERIVGLTRLHEGCMQLLSGLQV 975
Query: 476 LEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 535
L+I E T +W+ NG +++L +SCP+L SL E+EK E+ +L+
Sbjct: 976 LDICGCDELTCLWE--NGF----DGIQQLQTSSCPELVSL-GEKEKH------EMPSKLQ 1022
Query: 536 YLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSL 595
LT+SGC L KLP L+ L E+ IY C LVSFPE+ P L+++ I C+ L+ L
Sbjct: 1023 SLTISGCNNLEKLPNGLHRLTCLGELEIYGCPKLVSFPELGFPPMLRRLVIVGCEGLRCL 1082
Query: 596 PEAWMCDTNSS--------LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVE 647
P+ M + S LE L I +C SL F +LP +LKQL I C+ + +L
Sbjct: 1083 PDWMMVMKDGSNNGSDVCLLEYLKIDTCPSLIGFPEGELPTTLKQLRIWECEKLESLP-- 1140
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
G+ S++ TS L L I C SLT F + P+TL+ LE ++
Sbjct: 1141 GGMMHHDSNTTTATSGGLHVLDIWDCPSLT-FFPTGKFPSTLQKLE------------IW 1187
Query: 708 ECSKLESIAERL--DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE 765
+C++LESI+E + NN+SLE +SI S LKI+P L+ +L+E++I C N+ P
Sbjct: 1188 DCAQLESISEEMFHSNNSSLEYLSISSYPCLKIVPDCLY---KLRELKINKCENVELQPY 1244
Query: 766 GGLPCAKLMRLEIYGCERLEA-LPK-GLHNLTSLQELRIGRGVELPSLEEEDG-----LP 818
L L I CE ++ L + GL LTSL++L IG G+ P DG LP
Sbjct: 1245 HLQNLTALTSLTISDCENIKTPLSRWGLATLTSLKKLTIG-GIFPPVASFSDGQRPPILP 1303
Query: 819 TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFF 878
T L L I F SL L ++ +LTSLE
Sbjct: 1304 TTLTLLSI--------------NDFQNLKSLSSLALQ-------------TLTSLE---- 1332
Query: 879 PNLERLSSSIVDLQILTELRLYHCRKLKYF-PKKGLPSSLLRLWIEGCPLIEEKCRKDGG 937
EL + C KL+ F P++GLP +L RL+I+ CPL++++C K G
Sbjct: 1333 -----------------ELWIRCCPKLESFCPREGLPDTLSRLYIKDCPLLKQRCSKRKG 1375
Query: 938 QYWDLLTHIPRVQIDLKWVFGD 959
Q W + HIP VQ D K V +
Sbjct: 1376 QDWPNIAHIPYVQTDDKNVLKE 1397
|
Source: Vitis labrusca Species: Vitis labrusca Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.427 | 0.287 | 0.412 | 3.2e-98 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.421 | 0.383 | 0.410 | 3.9e-84 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.636 | 0.338 | 0.251 | 3.6e-29 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.395 | 0.191 | 0.268 | 2.8e-18 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.388 | 0.306 | 0.269 | 5.2e-15 | |
| TAIR|locus:2098110 | 1219 | AT3G44670 [Arabidopsis thalian | 0.207 | 0.163 | 0.334 | 3.2e-13 | |
| TAIR|locus:2117149 | 1201 | AT4G19050 [Arabidopsis thalian | 0.359 | 0.287 | 0.264 | 4.6e-13 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.245 | 0.197 | 0.278 | 7.8e-13 | |
| TAIR|locus:2147992 | 1189 | AT5G11250 [Arabidopsis thalian | 0.358 | 0.289 | 0.250 | 3.2e-12 | |
| TAIR|locus:2205824 | 1384 | AT1G27170 [Arabidopsis thalian | 0.400 | 0.277 | 0.243 | 8.8e-08 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 3.2e-98, Sum P(2) = 3.2e-98
Identities = 176/427 (41%), Positives = 238/427 (55%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQH 60
MHDL+NDLA+ +G+ FR+E + N + RH S+ CD F + +
Sbjct: 487 MHDLMNDLAKAVSGDFCFRLE---DDNIPE-IPSTTRHFSFSRSQCDASVAFRSICGAEF 542
Query: 61 LRTFLPVTLSNSSRG-HLAYSIL-PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLN 118
LRT LP S L +L P L L LR SL Y I LP S+ L+ LRYL+
Sbjct: 543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLD 602
Query: 119 LSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLG 178
LS T I+ LPE V L NL TLLL +CR+L L + LI L + T L EMP G
Sbjct: 603 LSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMPPG 661
Query: 179 IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKN 238
I KL LQ L NFV+G+ SG+GL ELK L HLRG L IS+L+NV AK+A L K
Sbjct: 662 IKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721
Query: 239 LKELLLRWTRS----TDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDS 294
L L+L+WT GS + A + VL ML+PH +L+ FCI+ Y+G FP WLGDS
Sbjct: 722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDS 781
Query: 295 SFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFY---GNDPPIPFPC 351
SF + ++ +C +C +LP +GQLPSLK+L++ + ++++G +F+ N +PF
Sbjct: 782 SFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841
Query: 352 LETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEG 411
L+ L F M W++WI G+ FP L++L I RC L+ FPE LP+ + I
Sbjct: 842 LQILKFYGMPRWDEWICPELEDGI---FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISD 898
Query: 412 CEELSVS 418
C +VS
Sbjct: 899 CPLRAVS 905
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 3.9e-84, Sum P(2) = 3.9e-84
Identities = 175/426 (41%), Positives = 256/426 (60%)
Query: 1 MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPE-YCDGVKRFEDLYDIQ 59
MHD IN+LAQ+A+GE + E + K Q SE R+LSY+ + Y + ++ FE L +++
Sbjct: 492 MHDFINELAQFASGEFSSKFE---DGCKLQ-VSERTRYLSYLRDNYAEPME-FEALREVK 546
Query: 60 HLRTFLPVTLSNSSRGH-LAYSILPKLFK-LQRLRAFSLRGYHIFELP-DSIGDLRYLRY 116
LRTFLP++L+NSSR L + KL L RLR SL Y I LP D ++ + R+
Sbjct: 547 FLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARF 606
Query: 117 LNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMP 176
L+LS T + LP+S+ +YNL TLLL C LK+L D+ NLI L + + T L +MP
Sbjct: 607 LDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMP 665
Query: 177 LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGK 236
G+L LQTL F V GS +SEL L L G L+I +L+ V DV +A EA L+ K
Sbjct: 666 RRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSK 725
Query: 237 KNLKELLLRW----TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292
K+L+E+ W + S + ++ + E V + L+PH ++E+ I+ Y+G +FP WL
Sbjct: 726 KHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLS 785
Query: 293 DSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPI----- 347
D SFS +V ++ + C CT+LPS+GQLP LK L + GM ++ +G +FY +D +
Sbjct: 786 DPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQ 845
Query: 348 -PFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEM 406
PF LETL F+N+ +W++W+ ++G + FP L++L ILRC +L GT P LP+L
Sbjct: 846 QPFRSLETLRFDNLPDWQEWLDVRVTRGDL--FPSLKKLFILRCPELTGTLPTFLPSLIS 903
Query: 407 LVIEGC 412
L I C
Sbjct: 904 LHIYKC 909
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
Identities = 169/673 (25%), Positives = 261/673 (38%)
Query: 297 SNLVTLKFKNCGMCTAL--PSMGQLPSLKHLTVRGMSRVKRLGS--EFYGNDPPIPFP-C 351
SNLV+L+ +C L S L SL L + G R+ R +G D P
Sbjct: 1141 SNLVSLQLHSCTALEELIIQSCESLSSLDGLQLLGNLRLLRAHRCLSGHGEDGRCILPQS 1200
Query: 352 LETLLFENMREWEDWISHGSSQGVVEG-FPKLRELHILRCSKLKGTFPEHLPALEMLVIE 410
LE L + E+ S + Q G LR+LH+L S L ALE L+I+
Sbjct: 1201 LEELY---IHEY----SQETLQPCFSGNLTLLRKLHVLGNSNLVSLQLHSCTALEELIIQ 1253
Query: 411 GCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGXXXXXX 470
CE LS S+ L L L++ + + +GH G + + ++++
Sbjct: 1254 SCESLS-SLDGLQLLGNLRLLRAHRCL----SGH-GEDGRCILPQSLEELYIHEYSQETL 1307
Query: 471 XXXXXXXIIDMKEQTYIWKSHNGLLQ--DISSLKRLTIASCPKLQSLVAEEEKDQQQQL- 527
+ +++ + S+ LQ ++L+ L I SC L SL + + L
Sbjct: 1308 QPCFSGNLTLLRKLHVLGNSNFVSLQLHSCTALEELIIQSCESLSSLDGLQLLGNLRLLQ 1367
Query: 528 -------------CELSCRLEYLTLSGCQGLVKLPQXXXXXXXXREIVIYKCSSLVSFPE 574
C L LE L + P R++ + S+LVS +
Sbjct: 1368 AHRCLSGHGEDGRCILPQSLEELYIHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSL-Q 1426
Query: 575 VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLD 634
+ + L+++ I C++L SL + L+ S H G LP+SL++L
Sbjct: 1427 LHSCTALEELIIQSCESLSSLDGLQLLGNLRLLQAHRCLSGHGED--GRCILPQSLEELY 1484
Query: 635 ILSCDNIRTLTVEEGIQCXXXXXXXXXXXLLEHLHIESCLSLTCIFSKNELPATLESLEV 694
I G L L + SC SL + K + +L SL+
Sbjct: 1485 IHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSLQLHSCTSLEEL--KIQSCESLSSLDG 1542
Query: 695 GNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEI 754
L +L+ L C R SLE + I + P L NL L+++E+
Sbjct: 1543 LQLLGNLRLLQAHRCLSGHGEDGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEV 1602
Query: 755 WNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSL--- 811
+L S C L L+I GC L L +GL L +L+ +++ R LP
Sbjct: 1603 SGTTSLKSLELQS--CTALEHLKIQGCASLATL-EGLQFLHALRHMKVFRCPGLPPYLGS 1659
Query: 812 EEEDG--LPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC--------DDDM 861
E G L L+ LDI + S + H +SL+RLE+ C D+
Sbjct: 1660 SSEQGYELCPRLERLDIDDPSILTTSFCK-----H-LTSLQRLELNYCGSEVARLTDEQE 1713
Query: 862 VSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLW 921
+ L SL L + NL L + + L L L + CR + P+KGLP S L
Sbjct: 1714 RALQLLTSLQELRFKYCYNLIDLPAGLHSLPSLKRLEIRSCRSIARLPEKGLPPSFEELD 1773
Query: 922 IEGCPL-IEEKCR 933
I C + ++CR
Sbjct: 1774 IIACSNELAQQCR 1786
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 114/425 (26%), Positives = 187/425 (44%)
Query: 533 RLEYLTLSGCQGLVKLPQXXXXXXXXREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDA 591
+L+ L L GC +++LP + + + +CSSLV P + L+ +++ C
Sbjct: 712 KLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDLG-CLR 770
Query: 592 LKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEG-- 649
L LP + + TN L+ ++ C SL + +L+ LD+ +C ++ L G
Sbjct: 771 LLKLPLSIVKFTN--LKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSLVELPSSIGNA 828
Query: 650 --IQ------CXXXX---XXXXXXXLLEHLHIESCLSL----TCIFSKNEL-------PA 687
+Q C LE L + C SL T I L +
Sbjct: 829 INLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCS 888
Query: 688 TLESL--EVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHN 745
+L L VGN+ L+ L + CS L + + T+L + + C +L LPS + N
Sbjct: 889 SLVELPSSVGNIS-ELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGN 947
Query: 746 LCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRG 805
+ LQE+ + NC NLV P L L + C++LEALP + NL SL+ L +
Sbjct: 948 ITNLQELNLCNCSNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNI-NLKSLERLDLTDC 1006
Query: 806 VELPSLEEEDGLPTNLQSLDIWGN-IEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSF 864
+ S E + TN++ L + G +E S I+ +S L L + + + F
Sbjct: 1007 SQFKSFPE---ISTNIECLYLDGTAVEEVPSSIK------SWSRLTVLHM-SYFEKLKEF 1056
Query: 865 PLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEG 924
+ + + F +++ ++ I ++ L LRLY CRKL P+ LP SL + EG
Sbjct: 1057 SHVLDIITW-LEFGEDIQEVAPWIKEISRLHGLRLYKCRKLLSLPQ--LPESLSIINAEG 1113
Query: 925 CPLIE 929
C +E
Sbjct: 1114 CESLE 1118
|
|
| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 115/426 (26%), Positives = 183/426 (42%)
Query: 495 LQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQXXXX 554
+Q + +LKR+ + S L+ L D + LE L L+GC LV+LP
Sbjct: 670 IQPLRNLKRMDLFSSKNLKEL-----PDLSS-----ATNLEVLNLNGCSSLVELPFSIGN 719
Query: 555 XXXXREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTIS 613
++ + CSSL+ P + L+ I+ HC+ L LP + TN L+ L +S
Sbjct: 720 ATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATN--LKELDLS 777
Query: 614 SCHSLTYF-GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCXXXXXXXXXXXLLEHLHIES 672
C SL + +LK+L ++ C +++ L G C L+ LH+
Sbjct: 778 CCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIG-NCTN----------LKELHLTC 826
Query: 673 CLSLTCIFSKNELPATLESLEVGN------LPP------SLKSLGVFECSKLESIAERLD 720
C SL + S LE L + LP +LK L + S L + +
Sbjct: 827 CSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNLGYLSCLVELPSFIG 886
Query: 721 NNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780
N L + + C L++LP+ + NL L E+++ +C L +FP + + RL + G
Sbjct: 887 NLHKLSELRLRGCKKLQVLPTNI-NLEFLNELDLTDCILLKTFP---VISTNIKRLHLRG 942
Query: 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERG 840
+ +E +P L + L++L++ L T L+ DI NI + R
Sbjct: 943 TQ-IEEVPSSLRSWPRLEDLQMLYSENLSEFSHVLERITVLELSDI--NIREMTPWLNR- 998
Query: 841 RGFHGFSSLRRLEIRGCDDDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRL 899
+ LRRL++ GC +VS P L SL L+ +LERL S + I L
Sbjct: 999 -----ITRLRRLKLSGCGK-LVSLPQLSDSLIILDAENCGSLERLGCSFNNPNIKC-LDF 1051
Query: 900 YHCRKL 905
+C KL
Sbjct: 1052 TNCLKL 1057
|
|
| TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 73/218 (33%), Positives = 106/218 (48%)
Query: 701 LKSLGVFECSKLESIAE--RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCG 758
L++L + S E + E L T+LE + + C +L LPS + L LQ + + C
Sbjct: 715 LRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCS 774
Query: 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLH--NLTSLQELRIGRGVELPSLEEEDG 816
+LV P G KL L + C LE LP ++ NL L + R VELP++E
Sbjct: 775 SLVELPSFG-NATKLEELYLENCSSLEKLPPSINANNLQQLSLINCSRVVELPAIENA-- 831
Query: 817 LPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLP-ASLTSL-- 873
TNLQ LD+ GN S+IE ++L+ L I GC +V P +T+L
Sbjct: 832 --TNLQKLDL-GNCS---SLIELPLSIGTATNLKELNISGCSS-LVKLPSSIGDITNLKE 884
Query: 874 -EISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK 910
++S NL L +I +L+ L L L C +LK FP+
Sbjct: 885 FDLSNCSNLVELPINI-NLKFLDTLNLAGCSQLKSFPE 921
|
|
| TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 106/401 (26%), Positives = 170/401 (42%)
Query: 82 LPKLFKLQRLRAFSLRGYH-IFELPDSI-GDLRYLRYLNLSGTHIRALPESVNKLYNLHT 139
+ KL LQ L + G + +PD ++ L+ LNLSG I++ P ++ KL L
Sbjct: 484 IDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSLNLSGLAIKSSPSTIEKLSMLRC 543
Query: 140 LLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPL-GIGKL-TCLQTLCNFVVGKDS 197
+L C EL+ D+ N I T LE + + G KL + + ++ K
Sbjct: 544 FILRHCSELQ----DLPNFIV-------ETRKLEVIDIHGARKLESYFDRVKDWKDYKGK 592
Query: 198 GSGLSELKLLMHLRGALEISKLENVK-DVGNAKEARLDGKKN--LKELLLR-WTRSTDGS 253
++L+LL HL + S+ + ++ + + K++ D L LLLR TR
Sbjct: 593 NKNFAQLQLLEHL----DFSETKIIRLPIFHLKDSTNDFSTMPILTRLLLRNCTRLKRLP 648
Query: 254 SSREAETEMGVLDMLKPHTNLE--QFCIKGYEGMKFPTW-------LGDS--SFSNLVTL 302
R T + +LD +E + C++ + ++ L D+ NL L
Sbjct: 649 QLRPL-TNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADVVNLNKL 707
Query: 303 KFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFE-NMR 361
+NC + LPS+ +L L+ V G ++K + F G + E L E N+
Sbjct: 708 LLRNCSLIEELPSIEKLTHLEVFDVSGCIKLKNINGSF-GEMSYLH----EVNLSETNLS 762
Query: 362 EWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFP--EHLPALEMLVIEGCEELSV-- 417
E D IS S+ L+EL I +CSKLK T P E L LE+ + GC EL
Sbjct: 763 ELPDKISELSN---------LKELIIRKCSKLK-TLPNLEKLTNLEIFDVSGCTELETIE 812
Query: 418 -SVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDAS 457
S L L K+ + + L + ++ R+ S
Sbjct: 813 GSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCS 853
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 76/273 (27%), Positives = 125/273 (45%)
Query: 537 LTLSGCQGLVKLPQXXXXXXXXREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSL 595
L L C LVKLP +++ + +CSSLV P + LK++N+ C +L +
Sbjct: 709 LDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEI 768
Query: 596 PEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS------LKQLDILSCDNIRTLTVEEG 649
P + N L+ + C SL VQLP S LK+L +L+C ++
Sbjct: 769 PSSIGNIVN--LKKVYADGCSSL-----VQLPSSIGNNTNLKELHLLNCSSL-------- 813
Query: 650 IQCXXXXXXXXXXXLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709
++C LE L++ CLSL +LP+ +GN+ +L+SL + +C
Sbjct: 814 MECPSSMLNLTR---LEDLNLSGCLSLV------KLPS------IGNVI-NLQSLYLSDC 857
Query: 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769
S L + ++N T+L+ + + C NL LPS + N+ LQ + + C +L P
Sbjct: 858 SSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVEN 917
Query: 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802
L L + C L LP + +++L L +
Sbjct: 918 AINLQSLSLMKCSSLVELPSSIWRISNLSYLDV 950
|
|
| TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 92/367 (25%), Positives = 161/367 (43%)
Query: 568 SLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNS-SLEILTISSCHSLTYFGGVQL 626
+L P+++ L+K+ + +C +L LP C N+ +LE L ++ C SL
Sbjct: 688 NLKELPDLSTAINLRKLILSNCSSLIKLPS---CIGNAINLEDLDLNGCSSLVELPSFGD 744
Query: 627 PRSLKQLDILSCDNIRTL--TVEEGIQCXXXXXXXXXXXLLEHLHIESCLSLTCIFSKNE 684
+L++L + C N+ L ++ I + I + ++L I N
Sbjct: 745 AINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLL-ILDLNG 803
Query: 685 LPATLE-SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGL 743
LE +GN +L+ L + C+KL + + N +L+ + + C +L LPS +
Sbjct: 804 CSNLLELPSSIGNAI-NLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSI 862
Query: 744 HNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIG 803
N L + + NC NLV P KL L + GC +LE LP + NL SL L +
Sbjct: 863 GNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPINI-NLESLDILVLN 921
Query: 804 RGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS 863
+ L+ + TN+++L + G ++ E + L L + D++V
Sbjct: 922 ---DCSMLKRFPEISTNVRALYLCGT-----AIEEVPLSIRSWPRLDEL-LMSYFDNLVE 972
Query: 864 FPLPASL-TSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWI 922
FP + T+L++S ++ + I + L L L RK+ P+ +P SL +
Sbjct: 973 FPHVLDIITNLDLSG-KEIQEVPPLIKRISRLQTLILKGYRKVVSLPQ--IPDSLKWIDA 1029
Query: 923 EGCPLIE 929
E C +E
Sbjct: 1030 EDCESLE 1036
|
|
| TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 101/414 (24%), Positives = 173/414 (41%)
Query: 534 LEYLTLSGCQGLVKLPQXXXXXXXXREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALK 593
LE L LSGC L LP+ +E+++ +++ + PE ++L+ + I K
Sbjct: 743 LEKLFLSGCSDLSVLPENIGAMTSLKELLL-DGTAIKNLPESI--NRLQNLEILSLRGCK 799
Query: 594 SLPEAWMC-DTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGI-Q 651
+ E +C T SLE L + + ++L+ L ++ C ++ + + I +
Sbjct: 800 -IQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDLHLVRCTSLSK--IPDSINE 856
Query: 652 CXXXXXXXXXXXLLEHLHIE-SCLSLTCIFSKNELPATLE-SLEVGNLPPSLKSLGVFEC 709
+E L ++ S L FS + + +G L SL L +
Sbjct: 857 LKSLKKLFINGSAVEELPLKPSSLPSLYDFSAGDCKFLKQVPSSIGRLN-SLLQLQL-SS 914
Query: 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769
+ +E++ E + + + + +C LK LP + ++ L + + N+ PE
Sbjct: 915 TPIEALPEEIGALHFIRELELRNCKFLKFLPKSIGDMDTLYSLNLEG-SNIEELPEEFGK 973
Query: 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829
KL+ L + C+ L+ LP+ +L SL L + + + L E G +NL L++
Sbjct: 974 LEKLVELRMSNCKMLKRLPESFGDLKSLHRLYMKETL-VSELPESFGNLSNLMVLEMLKK 1032
Query: 830 --IEIWKSMI----ERGRGF---HGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPN 880
I +S + E R + FS L +LE +S +P L L N
Sbjct: 1033 PLFRISESNVPGTSEEPRFVEVPNSFSKLLKLEELDACSWRISGKIPDDLEKLSCLMKLN 1092
Query: 881 L-----ERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIE 929
L L SS+V L L EL L CR+LK P LP L +L + C +E
Sbjct: 1093 LGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPP--LPCKLEQLNLANCFSLE 1144
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00010803001 | SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (1418 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 959 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 7e-12 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-10 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 5e-08 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-06 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-05 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 5e-05 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 2e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.002 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-12
Identities = 84/326 (25%), Positives = 135/326 (41%), Gaps = 65/326 (19%)
Query: 581 LKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS------LKQLD 634
L+ I++ LK +P+ M ++LE L +S C SL V+LP S L+ LD
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMA---TNLETLKLSDCSSL-----VELPSSIQYLNKLEDLD 687
Query: 635 ILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIF--SKNELPATLESL 692
+ C+N+ L ++ + S L I + +S + + E P+ L L
Sbjct: 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR-L 746
Query: 693 EVGNLPPSLKSLGVFECSKLESIAERLDNNT--------SLEIISIGSCGNLKILPSGLH 744
E +L L + E K E + ER+ T SL + + +L LPS +
Sbjct: 747 E------NLDELILCE-MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799
Query: 745 NLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804
NL +L+ +EI NC NL + P G+ L L++ GC RL P N++ L R G
Sbjct: 800 NLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG- 857
Query: 805 GVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSF 864
+EE + W IE+ FS+L L++ GC++
Sbjct: 858 ------IEE----------------VPWW---IEK------FSNLSFLDMNGCNNLQRVS 886
Query: 865 PLPASLTSLEISFFPNLERLSSSIVD 890
+ L LE F + L+ + +
Sbjct: 887 LNISKLKHLETVDFSDCGALTEASWN 912
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-10
Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 17/224 (7%)
Query: 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769
SKLE + + + + T L I + NLK +P L L+ +++ +C +LV P
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679
Query: 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829
KL L++ CE LE LP G+ NL SL L + L S + + TN+ LD+
Sbjct: 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDET 735
Query: 830 -IEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-------LPASLTSLEISFFPNL 881
IE + S + L E++ P L SLT L +S P+L
Sbjct: 736 AIEEFPSNLR----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791
Query: 882 ERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGC 925
L SSI +L L L + +C L+ P SL L + GC
Sbjct: 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 63/235 (26%), Positives = 93/235 (39%), Gaps = 50/235 (21%)
Query: 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCE 782
T+LE + + C +L LPS + L +L+++++ C NL P G + L RL + GC
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCS 715
Query: 783 RLEALPKGLHNLTSLQELRIGRGVELPS---LEEEDGLP-TNLQSLDIWGNIEIW----- 833
RL++ P N++ L +L E PS LE D L ++S +W ++
Sbjct: 716 RLKSFPDISTNISWL-DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774
Query: 834 --------------KSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFP 879
S++E L LEI C
Sbjct: 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--------------------- 813
Query: 880 NLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRL---WIEGCPLIEEK 931
NLE L + I +L+ L L L C +L+ FP S L L IE P EK
Sbjct: 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 53/239 (22%)
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHC 589
++ LE L LS C LV+LP S L+ L ++ + +C +L P L ++N+ C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEG 649
LKS P+ IS+ NI L ++E
Sbjct: 715 SRLKSFPD--------------IST-------------------------NISWLDLDE- 734
Query: 650 IQCSSSSSRRYTSSLLEHLHIESCLSLT-CIFSKNELPATLESLE--VGNLPPSLKSLGV 706
++ + S+ L +E+ L C +L ++ L + L PSL L +
Sbjct: 735 -----TAIEEFPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785
Query: 707 FECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE 765
+ L + + N LE + I +C NL+ LP+G+ NL L+ +++ C L +FP+
Sbjct: 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 49/344 (14%)
Query: 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT-HIRALPESVNKLYNLHTL 140
+P F+ + L ++G + +L D + L LR ++L G+ +++ +P+ ++ NL TL
Sbjct: 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662
Query: 141 LLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSG 200
L DC L +L + + L KL + S ++LE +P GI L++L + + SG
Sbjct: 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSL-----YRLNLSG 713
Query: 201 LSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAET 260
S LK + + L+ RL+ NL EL+L +S + T
Sbjct: 714 CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLE---NLDELILCEMKSEKLWERVQPLT 770
Query: 261 EMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLP 320
+ + ML + F ++ P+ + + L L+ +NC LP+ L
Sbjct: 771 PL--MTML-SPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGINLE 825
Query: 321 SLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFE------NMREWEDWISHGSSQG 374
SL+ L + G SR++ FP + T + + + E WI
Sbjct: 826 SLESLDLSGCSRLR-------------TFPDISTNISDLNLSRTGIEEVPWWI------- 865
Query: 375 VVEGFPKLRELHILRCSKLKGTFPE--HLPALEMLVIEGCEELS 416
E F L L + C+ L+ L LE + C L+
Sbjct: 866 --EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 25/142 (17%)
Query: 609 ILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLT--VEEGIQCSSSSSRRYTSSLLE 666
L I C + LP L ++ I +C+N+ TL + EG++ + S L E
Sbjct: 56 RLYIKDCD-IESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112
Query: 667 HLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDN--NTS 724
+ L + +S++ N+P L SL + E+ A R+DN + S
Sbjct: 113 SV---RSLEIKGSA--------TDSIK--NVPNGLTSLSI-NSYNPENQA-RIDNLISPS 157
Query: 725 LEIISIGSCGNLKI---LPSGL 743
L+ +S+ C N+ + LP L
Sbjct: 158 LKTLSLTGCSNIILPEKLPESL 179
|
Length = 426 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 28/200 (14%)
Query: 685 LPATLESLEVGNLPPS-LKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKI----- 738
L E + L S L+ G F CS + + + + +I + G L I
Sbjct: 6 LSTENEKNKEAMLSTSQLEPDGTF-CSNSTETSAEIRSEITPQIEEARASGRLYIKDCDI 64
Query: 739 --LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTS 796
LP + L EI I NC NL + P G +P L +L + C + LP+ + +L
Sbjct: 65 ESLPVLPNEL---TEITIENCNNLTTLP-GSIP-EGLEKLTVCHCPEISGLPESVRSLEI 119
Query: 797 LQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856
+G S++ +P L SL I ++ I+ SL+ L + G
Sbjct: 120 -------KGSATDSIK---NVPNGLTSLSINSYNPENQARIDNLIS----PSLKTLSLTG 165
Query: 857 CDDDMVSFPLPASLTSLEIS 876
C + ++ LP SL S+ +
Sbjct: 166 CSNIILPEKLPESLQSITLH 185
|
Length = 426 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 41/221 (18%)
Query: 382 LRELHILRCSKLK--GTFPEHLPALEMLVIEGCEELSVSVS--RLPALCKLQIGGCKKVV 437
L L + CS L + ++L LE L + CE L + + L +L +L + GC ++
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL- 717
Query: 438 WESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQD 497
++ D P +L L+EL + +MK + +W+ +Q
Sbjct: 718 ----KSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-LWER----VQP 768
Query: 498 ISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSS 557
++ L + LS L L LS LV+LP S +L
Sbjct: 769 LTPLMTM-------------------------LSPSLTRLFLSDIPSLVELPSSIQNLHK 803
Query: 558 LREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPE 597
L + I C +L + P + L S L+ +++ C L++ P+
Sbjct: 804 LEHLEIENCINLETLPTGINLES-LESLDLSGCSRLRTFPD 843
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.93 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.88 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.68 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.55 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.54 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.53 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.48 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.46 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.45 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.35 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.34 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.94 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.92 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.87 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.86 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.83 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.82 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.79 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.78 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.71 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.71 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.68 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.67 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.6 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.59 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.5 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.4 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.4 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.39 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.33 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.26 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.23 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.23 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.21 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.1 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.93 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.87 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.84 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.77 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.41 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.37 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.33 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.22 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.13 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.98 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.63 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.32 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.25 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.14 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.93 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.29 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.07 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.75 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.17 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.11 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.65 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.08 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.08 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.65 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.64 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.64 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=427.03 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=54.9
Q ss_pred CceeEEEecCCCCcc-ccccccccCcccEEeccCCCCc-ccchhhh-ccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 89 QRLRAFSLRGYHIFE-LPDSIGDLRYLRYLNLSGTHIR-ALPESVN-KLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.+++.|+|++|.++. +|..|..+++|++|+|++|++. .+|..+. .+.+|++|++++|+....+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 356666666666543 3555666666666666666665 4555543 666666666666544444442 4456666666
Q ss_pred cCCCCcccccccccccccCCcee
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+++|.....+|..++++++|++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEE
Confidence 66665323444445555444444
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=427.97 Aligned_cols=528 Identities=20% Similarity=0.228 Sum_probs=317.8
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCc-cccccc-cccCcccEEeccCCCCc-ccchhhhccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSI-GDLRYLRYLNLSGTHIR-ALPESVNKLY 135 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~~L~L~~n~i~-~lp~~i~~L~ 135 (959)
.+++.|.+.++. +.+.+++.|..+++|++|+|++|.+. .+|..+ ..+++||+|+|++|++. .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 467777776543 24455666788888888888888876 567654 48888888888888776 3443 4678
Q ss_pred cccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhccccee
Q 002156 136 NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALE 215 (959)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 215 (959)
+|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|++|++..+...
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------------- 201 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV------------------- 201 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-------------------
Confidence 8888888886555577877888888888888888745567777777777777754332210
Q ss_pred eccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCC
Q 002156 216 ISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSS 295 (959)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 295 (959)
...+..+..+.+|+.|++++|... ..+|..+..
T Consensus 202 -----------~~~p~~l~~l~~L~~L~L~~n~l~----------------------------------~~~p~~l~~-- 234 (968)
T PLN00113 202 -----------GQIPRELGQMKSLKWIYLGYNNLS----------------------------------GEIPYEIGG-- 234 (968)
T ss_pred -----------CcCChHHcCcCCccEEECcCCccC----------------------------------CcCChhHhc--
Confidence 011112334444455554444331 123444432
Q ss_pred CCCccEEEEecCCCCCCCC-CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCC
Q 002156 296 FSNLVTLKFKNCGMCTALP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQG 374 (959)
Q Consensus 296 l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 374 (959)
+++|++|++++|.+.+.+| .++.+++|++|++++|.....+ +.
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------------------------------------p~ 278 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI------------------------------------PP 278 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC------------------------------------ch
Confidence 5566666666665554444 5556666666666554321111 11
Q ss_pred ccccccccceeccccCccccCCCCC---CCCCccEEEEeccCCc---ccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 375 VVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEEL---SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
....+++|++|++++| .+++.+|. .+++|+.|++++|... ...+..+++|+.|++.+|.
T Consensus 279 ~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------- 343 (968)
T PLN00113 279 SIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-------------- 343 (968)
T ss_pred hHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC--------------
Confidence 1223344444444442 23333332 1112222222221100 0123334445555554444
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+.+.+|..+..+.+|+.+++++|.+.. .++. .+.
T Consensus 344 -------------l~~~~p~~l~~~~~L~~L~Ls~n~l~~-------------------------~~p~-~~~------- 377 (968)
T PLN00113 344 -------------FSGEIPKNLGKHNNLTVLDLSTNNLTG-------------------------EIPE-GLC------- 377 (968)
T ss_pred -------------CcCcCChHHhCCCCCcEEECCCCeeEe-------------------------eCCh-hHh-------
Confidence 233333344444444444444443311 1110 000
Q ss_pred hcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
..++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+| .+..++.|+.|++++|...+.++..+ ..+++|
T Consensus 378 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L 454 (968)
T PLN00113 378 -SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSL 454 (968)
T ss_pred -CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCC
Confidence 01566677777777766677777777777777777776554444 34556677777777776666555544 456666
Q ss_pred cEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcch
Q 002156 608 EILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPA 687 (959)
Q Consensus 608 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 687 (959)
++|++++|.....++.
T Consensus 455 ~~L~L~~n~~~~~~p~---------------------------------------------------------------- 470 (968)
T PLN00113 455 QMLSLARNKFFGGLPD---------------------------------------------------------------- 470 (968)
T ss_pred cEEECcCceeeeecCc----------------------------------------------------------------
Confidence 7766666542221110
Q ss_pred hhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 688 TLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 688 ~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
.+ . .++|+.|++++|...+.+|..+.++++|+.|++++|.+.+.+|..+..+++|++|+|++|...+.+|..+
T Consensus 471 ~~------~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 471 SF------G-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred cc------c-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 00 0 0467788888888777777788888888888888888888888888888888888888888777788888
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|++|++++|++.+.+|..+.++++|+.|++++|++.+.+|.. +.+.++....+.+|+.+
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 88888888888888888888888888888888888888888888843 44445555566666544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-31 Score=263.90 Aligned_cols=127 Identities=21% Similarity=0.202 Sum_probs=99.1
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGC 781 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 781 (959)
.+.-+..++..+.+|..+..+++|..|++++ +.+.++|..++.+..|++|+++.| ....+|........++.+-.++|
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNN 491 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccc
Confidence 3334445666777788888899999999965 566778888888888999999988 45667776666667777777777
Q ss_pred cCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 782 ERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 782 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
++...-|+.+.++.+|..||+.+|.+. .+|..++++++|++|+++||++
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 766555667888899999999988888 6777899999999999999974
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=286.02 Aligned_cols=186 Identities=18% Similarity=0.251 Sum_probs=122.9
Q ss_pred CchhHHHHHHHHhcCce-------EEEecc--cccccccccCCCeEEEEeecccccccc-cccccccCCcccEEeccccC
Q 002156 1 MHDLINDLAQWAAGEIY-------FRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVK-RFEDLYDIQHLRTFLPVTLS 70 (959)
Q Consensus 1 mHdl~~d~a~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~ 70 (959)
|||++||||+++++++. +.+... ..+.....-.++++++++......... .-.+|.++++||.|.+....
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999997753 111111 000111223456788777654433222 12457788888888776543
Q ss_pred CCCCCcccccccccCCCC-CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhh
Q 002156 71 NSSRGHLAYSILPKLFKL-QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELK 149 (959)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~ 149 (959)
.....+....+|..|..+ .+||.|.+.++.++.+|..| ...+|+.|++++|++..+|..+..+++|++|+|++|+.+.
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 111112234566667554 46888888888888888766 5678888888888888888888888888888888777777
Q ss_pred hhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 150 KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 150 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
.+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 777 47778888888888876566666656555555554
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-29 Score=271.36 Aligned_cols=243 Identities=22% Similarity=0.243 Sum_probs=161.6
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
.+|++++++++... .+|.+++.+.+|+.++..+|.. ..+| .+....+|+.|.+..|. ++.+|... ..+.+|++|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 56666666666553 3456666666677666666643 3344 34445566666666665 33333332 446666666
Q ss_pred EEecCCCCccccCCCC--C-CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcch
Q 002156 611 TISSCHSLTYFGGVQL--P-RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPA 687 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~--~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 687 (959)
++..+ ++..++...+ + .++..+..+ |.++..++- +.
T Consensus 316 dL~~N-~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~---------------------------------~~------ 354 (1081)
T KOG0618|consen 316 DLQSN-NLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPS---------------------------------YE------ 354 (1081)
T ss_pred eehhc-cccccchHHHhhhhHHHHHHhhh-hcccccccc---------------------------------cc------
Confidence 66662 2333332100 0 001111100 011111110 00
Q ss_pred hhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 688 TLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 688 ~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
+..-+.|++|++.+|.......+.+.++.+|+.|++++|++.......+.+++.|++|++|+| +++.+|...
T Consensus 355 -------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv 426 (1081)
T KOG0618|consen 355 -------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTV 426 (1081)
T ss_pred -------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHH
Confidence 001157899999999999988889999999999999998776555566789999999999999 788899999
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~ 831 (959)
..++.|++|...+|.++ .+| .+..+++|+.+|++.|.+... +|... --++|++||++||..
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 99999999999999854 566 788999999999999988744 33222 228999999999974
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-29 Score=246.80 Aligned_cols=253 Identities=23% Similarity=0.265 Sum_probs=163.3
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhcccccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~ 138 (959)
..+..+++..+. ...+.+++.++..|.+|++++|.+..+|++++++..++.|+.++|++.++|+.++.+.+|+
T Consensus 45 v~l~~lils~N~-------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHND-------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCc-------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 345555555544 3445555666666666666666666666666666666666666666666666666666666
Q ss_pred EEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCC-CCChhhhhhhhhcccceeec
Q 002156 139 TLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDS-GSGLSELKLLMHLRGALEIS 217 (959)
Q Consensus 139 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~ 217 (959)
.|+.++ +...++|++|+.+..|+.|+..+|+ +..+|.+++.+.+|..|..-++.... ....-.++.|+++.
T Consensus 118 ~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld------ 189 (565)
T KOG0472|consen 118 KLDCSS-NELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD------ 189 (565)
T ss_pred hhhccc-cceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc------
Confidence 666666 4566666666666666666666666 66666666666666655443332211 11222244444433
Q ss_pred cccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhh-----------hHhhhccCCCCCCCcceEEEeccCCCC
Q 002156 218 KLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAE-----------TEMGVLDMLKPHTNLEQFCIKGYEGMK 286 (959)
Q Consensus 218 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----------~~~~~l~~l~~~~~L~~L~l~~~~~~~ 286 (959)
...+.-+..+..+..+.+|+.|+++.|++...+...... .+....+.+..++.+..|+++.|+..+
T Consensus 190 ---~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 190 ---CNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred ---cchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 122334445555666777777777766665444322111 111222345678899999999999999
Q ss_pred CCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCC
Q 002156 287 FPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSR 332 (959)
Q Consensus 287 ~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 332 (959)
+|..+.. +.+|++|++++|.++...+.++++ +|+.|.+.||+.
T Consensus 267 ~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 267 VPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CchHHHH--hhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 9998865 899999999999998888899999 999999999874
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-26 Score=240.99 Aligned_cols=359 Identities=18% Similarity=0.159 Sum_probs=226.3
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCC-CCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALP-SKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
+.-++|++++|.+...-+..|.++++|+++++.+| .++.+|.++.. .+++.|++.+|.+.+.-.... ..+|.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhh
Confidence 55666777777776666666777777777777776 55667765554 347777777777655544444 566777777
Q ss_pred EEecCCCCccccCCCCC--CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 611 TISSCHSLTYFGGVQLP--RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
|++. +.+..++...+| .++++|++.+ ..++.+ ....+.++.+|-.|.+++..-- .+|.
T Consensus 155 DLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l----------~~~~F~~lnsL~tlkLsrNrit-------tLp~- 214 (873)
T KOG4194|consen 155 DLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTL----------ETGHFDSLNSLLTLKLSRNRIT-------TLPQ- 214 (873)
T ss_pred hhhh-chhhcccCCCCCCCCCceEEeecc-cccccc----------ccccccccchheeeecccCccc-------ccCH-
Confidence 7777 344555544444 3455555444 122222 1122233445555555553211 1111
Q ss_pred hhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCC
Q 002156 689 LESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 689 l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
-.|..+ +.|+.|+|..|.+-..-.-.|.++++|+.|.+..|.+....-..|..+.++++|+|+.|.....-...+.
T Consensus 215 ---r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 215 ---RSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ---HHhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 112233 4777888877766554455677788888888877776665556677788888888888754333333556
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++++|+.|++++|.+...-+++++-.++|+.|+|++|.+...-+..+..+..|++|+|++|....- ....+.++.+
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l----~e~af~~lss 366 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL----AEGAFVGLSS 366 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH----HhhHHHHhhh
Confidence 778888888888887776677777778888888888888766666677778888888888863321 1145667788
Q ss_pred ccEEEEcccCCC------cccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC-cccccee
Q 002156 849 LRRLEIRGCDDD------MVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL-PSSLLRL 920 (959)
Q Consensus 849 L~~L~l~~~~~~------~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L 920 (959)
|++|+++.+... ...|.-+++|+.|++-+ ++++.||. .+..+..|++||+.+|. +.++-...| +..|++|
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhh
Confidence 888887765322 11223467788888888 57787777 67778888888887754 444444333 4466666
Q ss_pred ecc
Q 002156 921 WIE 923 (959)
Q Consensus 921 ~l~ 923 (959)
.+.
T Consensus 445 v~n 447 (873)
T KOG4194|consen 445 VMN 447 (873)
T ss_pred hhc
Confidence 544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-26 Score=239.43 Aligned_cols=362 Identities=17% Similarity=0.161 Sum_probs=236.9
Q ss_pred EeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCC
Q 002156 478 IIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSS 557 (959)
Q Consensus 478 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 557 (959)
.+++++|++.. ....++..+++|+++++.. +.++.+|..+... .+|+.|+|.+|.+...-...+..++.
T Consensus 82 ~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~s---------ghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 82 TLDLSNNKLSH-IDFEFFYNLPNLQEVNLNK-NELTRIPRFGHES---------GHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeecccccccc-CcHHHHhcCCcceeeeecc-chhhhcccccccc---------cceeEEeeeccccccccHHHHHhHhh
Confidence 45555555422 1222334555555555554 4454444332111 34555555555554444444555555
Q ss_pred cceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEe
Q 002156 558 LREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635 (959)
Q Consensus 558 L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 635 (959)
|+.|||+.| .+..+| .+..-+++++|++++|.+.+.-...| ..+.+|-.|.++.+. ++.+|
T Consensus 151 lrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNr-ittLp------------- 213 (873)
T KOG4194|consen 151 LRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNR-ITTLP------------- 213 (873)
T ss_pred hhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCc-ccccC-------------
Confidence 555555555 222332 22223445555555555433322222 344455555555421 22222
Q ss_pred ecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHH
Q 002156 636 LSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESI 715 (959)
Q Consensus 636 ~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~ 715 (959)
...+-.++.|+.|++..... ...+.+.|.++ ++|+.|.+..|.+...-
T Consensus 214 --------------------~r~Fk~L~~L~~LdLnrN~i-----------rive~ltFqgL-~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 214 --------------------QRSFKRLPKLESLDLNRNRI-----------RIVEGLTFQGL-PSLQNLKLQRNDISKLD 261 (873)
T ss_pred --------------------HHHhhhcchhhhhhccccce-----------eeehhhhhcCc-hhhhhhhhhhcCccccc
Confidence 11222355666666554211 11223344555 59999999999988887
Q ss_pred HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+.|..|.++++|+|..|+....--.++.++++|+.|++++|...+.-+.....+++|++|++++|++...-+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 88899999999999999988777778889999999999999987776677788899999999999999888888999999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc---cccCCCCCce
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV---SFPLPASLTS 872 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~L~~ 872 (959)
+|+.|.|+.|.+...-...|..+++|++|||++|.... ........+.++++|++|++.|+....+ .|.-++.|++
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 99999999999885555567889999999999996432 2223345678899999999999865544 3557889999
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYH 901 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 901 (959)
||+.+|.....-|..|..+ +|++|.+..
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcc
Confidence 9999965444455578777 999998865
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-26 Score=250.98 Aligned_cols=104 Identities=32% Similarity=0.357 Sum_probs=77.6
Q ss_pred cccccC-CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc
Q 002156 80 SILPKL-FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 80 ~~~~~~-~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
..|-.| .+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+ +.+..+|.++..+
T Consensus 35 ~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 35 SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISEL 113 (1081)
T ss_pred cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhh
Confidence 333334 44444888888888888888888888888888888888888888888888888888886 6788888888888
Q ss_pred cccceeecCCCCcccccccccccccCC
Q 002156 159 IKLHHHNNSNTDSLEEMPLGIGKLTCL 185 (959)
Q Consensus 159 ~~L~~L~l~~~~~~~~~p~~i~~L~~L 185 (959)
++|+.|++++|. ...+|.-+..++.+
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAE 139 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHH
Confidence 888888888887 66666545444433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-23 Score=255.00 Aligned_cols=313 Identities=24% Similarity=0.319 Sum_probs=153.0
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++|+.|.+.+++. ..+|..+ .+.+|++|++.+|. +..++ ....+++|+.|++++|..++.+|.. ..+++|+.|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 3455555544433 3334333 34455555555442 22222 2333445555555554444444432 344555555
Q ss_pred EEecCCCCccccCC-CCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 611 TISSCHSLTYFGGV-QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 611 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
++++|..+..+|.. ....+|+.|++.+|.+++.+|.. ..+++|+.|++++|..+.. + |
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~------------i~l~sL~~L~Lsgc~~L~~-~-----p--- 721 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG------------INLKSLYRLNLSGCSRLKS-F-----P--- 721 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc------------CCCCCCCEEeCCCCCCccc-c-----c---
Confidence 55555544444332 22234555555555555444421 1234455555555544432 1 1
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-------ccCccccCCCCcceeeccccccccc
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-------ILPSGLHNLCQLQEIEIWNCGNLVS 762 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~p~~~~~l~~L~~L~l~~~~~l~~ 762 (959)
..+++|++|+++++.+ ..+|..+ .+++|++|.+.++.... ..+......++|++|++++|+.+..
T Consensus 722 ------~~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 722 ------DISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred ------cccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 1114556666665543 2334332 35556666555433211 0111122345666777776666666
Q ss_pred cCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccC
Q 002156 763 FPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRG 842 (959)
Q Consensus 763 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 842 (959)
+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|.....+|.. .++|+.|++++|..... + ..
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P----~s 864 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-P----WW 864 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-h----HH
Confidence 66666666677777777766666666554 5666777777776655555532 35666666666642111 0 11
Q ss_pred CCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCC
Q 002156 843 FHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 843 ~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
+..++ +|+.|++++|++++.+|..+..+++|+.+++++|..++.++
T Consensus 865 i~~l~---------------------~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFS---------------------NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCC---------------------CCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 22223 34444444455556655555556666666666666555443
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-25 Score=228.16 Aligned_cols=325 Identities=24% Similarity=0.304 Sum_probs=184.1
Q ss_pred ccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCc--cccccccccCcccEEeccCCCCcccchhh
Q 002156 54 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
.+..+.+|+.|.+..+. ..++...+..++.||.+++..|++. .+|+.+.+|..|.+||||+|++++.|..+
T Consensus 50 EL~~lqkLEHLs~~HN~-------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L 122 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQ-------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL 122 (1255)
T ss_pred HHHHHhhhhhhhhhhhh-------hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh
Confidence 34455555555554433 3444455566666666666666653 35666666666666666666666666666
Q ss_pred hccccccEEeccCcchhhhhhHh-hhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhc
Q 002156 132 NKLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 210 (959)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 210 (959)
..-+++-+|+||+ +.+..+|.. +-+|+.|-.|||++|+ ++.+|+.+.+|..||+|.+..+.
T Consensus 123 E~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP---------------- 184 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNP---------------- 184 (1255)
T ss_pred hhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCCh----------------
Confidence 6666666666666 456666655 5566666666666666 66666666666666666443221
Q ss_pred ccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCC--CCCC
Q 002156 211 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEG--MKFP 288 (959)
Q Consensus 211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p 288 (959)
. ....+..+..++.|++|++++..- ..+|
T Consensus 185 --------------------------------------L-----------~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 185 --------------------------------------L-----------NHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred --------------------------------------h-----------hHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 1 011222233344455555554322 2356
Q ss_pred ccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccc
Q 002156 289 TWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWIS 368 (959)
Q Consensus 289 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 368 (959)
..+.+ +.+|..++++.|.+...+..+-.+++|+.|++++|...+ +.
T Consensus 216 tsld~--l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~------------------------------- 261 (1255)
T KOG0444|consen 216 TSLDD--LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LN------------------------------- 261 (1255)
T ss_pred Cchhh--hhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-ee-------------------------------
Confidence 66644 777777777777665444466777778888887764222 11
Q ss_pred ccCCCCccccccccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 369 HGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 369 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
...+.-.+|++|++++ ++++ .+|.. +..++.|+.|++.+++ +.
T Consensus 262 -----~~~~~W~~lEtLNlSr-NQLt-~LP~a------------------vcKL~kL~kLy~n~Nk-L~----------- 304 (1255)
T KOG0444|consen 262 -----MTEGEWENLETLNLSR-NQLT-VLPDA------------------VCKLTKLTKLYANNNK-LT----------- 304 (1255)
T ss_pred -----ccHHHHhhhhhhcccc-chhc-cchHH------------------HhhhHHHHHHHhccCc-cc-----------
Confidence 0112345677777777 6676 66642 2333444444444443 11
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+. -+|+.+++|..|+++...+|.+- . .|. .+..|
T Consensus 305 -------------Fe-GiPSGIGKL~~Levf~aanN~LE--l-------VPE----glcRC------------------- 338 (1255)
T KOG0444|consen 305 -------------FE-GIPSGIGKLIQLEVFHAANNKLE--L-------VPE----GLCRC------------------- 338 (1255)
T ss_pred -------------cc-CCccchhhhhhhHHHHhhccccc--c-------Cch----hhhhh-------------------
Confidence 11 13455666766666666655441 0 000 11122
Q ss_pred hcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP 573 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~ 573 (959)
++|+.|.++.|... .+|.++.-++.|+.|++..|+++...|
T Consensus 339 ---~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 339 ---VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ---HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 55666666666553 467777777777777777777775544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-24 Score=226.64 Aligned_cols=367 Identities=18% Similarity=0.210 Sum_probs=236.2
Q ss_pred cceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc
Q 002156 473 LEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS 552 (959)
Q Consensus 473 L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 552 (959)
|+-.+-.|+++|.+.....+.-+..+++++.|.+.. .++..+|.+-... .+|++|.+++|+... +...+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~l---------qkLEHLs~~HN~L~~-vhGEL 74 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRL---------QKLEHLSMAHNQLIS-VHGEL 74 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHH---------hhhhhhhhhhhhhHh-hhhhh
Confidence 444556788888887666666677889999999987 6888887764322 688999999988754 44567
Q ss_pred cCCCCcceeeeccCCCc-ccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCC--C
Q 002156 553 LSLSSLREIVIYKCSSL-VSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP--R 628 (959)
Q Consensus 553 ~~l~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~ 628 (959)
+.+|.|+.+.+.+|..- ..+| ++..+..|..|++++|. ++..|... ....++-.|+++++ ++..+|..-+. .
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhH
Confidence 88899999999888543 2344 46667888999999987 56666665 56778888888883 34444432111 1
Q ss_pred CccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeecc
Q 002156 629 SLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708 (959)
Q Consensus 629 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~ 708 (959)
.|-.|++++ ..|+.+| ..+..+ ..|++|+|++
T Consensus 151 DLLfLDLS~-NrLe~LP-----------------------------------------PQ~RRL------~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 151 DLLFLDLSN-NRLEMLP-----------------------------------------PQIRRL------SMLQTLKLSN 182 (1255)
T ss_pred hHhhhcccc-chhhhcC-----------------------------------------HHHHHH------hhhhhhhcCC
Confidence 222333333 2333333 222111 3677777887
Q ss_pred ChhhHHHHHhhcCCCCccEEeecccCCC-cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcc
Q 002156 709 CSKLESIAERLDNNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEAL 787 (959)
Q Consensus 709 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 787 (959)
|+.....-..+-.+++|++|++++.+.. ..+|.++..+.+|..+|++.| .+..+|+.+..+++|+.|++++|++.+.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL- 260 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL- 260 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee-
Confidence 7776655556667777888888776553 356777888888888888876 5666777777788888888888876533
Q ss_pred ccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccccc--
Q 002156 788 PKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-- 865 (959)
Q Consensus 788 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-- 865 (959)
....+...+|++|++|.|+++ .+|..+..++.|+.|.+.+|+...+..+ .+++.+.+|+.+...++.....+-.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhccccccCchhhh
Confidence 234455567888888888777 7777777888888888877765444332 4566666666666665221111111
Q ss_pred CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCC
Q 002156 866 LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 866 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
.+..|+.|.++. +.+..+|.++.-++-|+.||+++|+++---|
T Consensus 337 RC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 223344444444 3455555555556666666666665554443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=232.75 Aligned_cols=189 Identities=28% Similarity=0.308 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHhc-----CceEEEecc--cccccccccCCCeEEEEeecccccccccccccccCCcccEEeccccCCCC
Q 002156 1 MHDLINDLAQWAAG-----EIYFRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSS 73 (959)
Q Consensus 1 mHdl~~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~ 73 (959)
|||+|||||.|+|+ ++.+++... .....+...+..+||++++.+.... ...-..+++|++|.+.++..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch--
Confidence 99999999999999 566555542 1112334456789999999876532 33445777999999988641
Q ss_pred CCcccccccccC-CCCCceeEEEecCCC-CccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh
Q 002156 74 RGHLAYSILPKL-FKLQRLRAFSLRGYH-IFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL 151 (959)
Q Consensus 74 ~~~~~~~~~~~~-~~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (959)
....++..| ..|+.||+|||++|. +..+|+++++|.+||||+|+++.|..+|..+++|+.|.+|++.++.....+
T Consensus 558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 135556654 899999999999877 789999999999999999999999999999999999999999997777777
Q ss_pred hHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCC
Q 002156 152 CADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG 198 (959)
Q Consensus 152 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~ 198 (959)
|..+..|.+||+|.+.... ...-...++.+.+|++|....+...+.
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh
Confidence 7667789999999997654 222223366667777776655544433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-18 Score=171.09 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=92.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
..++|..+.. .-..++|..|.|+.||+ +|+.+++||.|||++|+|+.| |++|.+|..|-.|-+.+++.|+.+|..
T Consensus 58 L~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 5566665521 23456788899999965 899999999999999999988 889999999888888887899999987
Q ss_pred hhcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
|++|..|+.|.+.-|. +.-++.+ +..|++|..|.++.+.
T Consensus 136 F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh
Confidence 8999999999998887 7777755 8888888888766554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-15 Score=168.20 Aligned_cols=256 Identities=27% Similarity=0.290 Sum_probs=128.0
Q ss_pred ccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEE
Q 002156 533 RLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTI 612 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 612 (959)
+-..|+++++.+. .+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|... .+|. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCccC-cccC-----cccccceeec
Confidence 4556777777554 5665543 36777777776 4445653 3567777777777533 4442 2356677777
Q ss_pred ecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhcc
Q 002156 613 SSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESL 692 (959)
Q Consensus 613 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~ 692 (959)
++|. ++.++. .+.+|+.|++.++ +++.+|
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP----------------------------------------------- 298 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLP----------------------------------------------- 298 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCC-cccccc-----------------------------------------------
Confidence 6643 333332 3334444444332 222222
Q ss_pred ccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCC
Q 002156 693 EVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAK 772 (959)
Q Consensus 693 ~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 772 (959)
..|++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+|.. ..+|++|++++|. +..+|.. .++
T Consensus 299 ---~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~ 363 (788)
T PRK15387 299 ---VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQ-LASLPTL---PSE 363 (788)
T ss_pred ---ccccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCc-cCCCCCC---Ccc
Confidence 011345555555543332 2211 123444455444332 23321 1345555555552 3334432 134
Q ss_pred ccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEE
Q 002156 773 LMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRL 852 (959)
Q Consensus 773 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 852 (959)
|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|..
T Consensus 364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~L--------------------- 414 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRL--------------------- 414 (788)
T ss_pred cceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcC---------------------
Confidence 555555555543 23322 134555555555554 23321 23455555555531
Q ss_pred EEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 853 EIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 853 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
..++ ..+.+|+.|++++ +.++.+|..+..+++|+.|++++|+.
T Consensus 415 -------ssIP-~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 415 -------TSLP-MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -------CCCC-cchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 1111 1233455666666 56778888888888888888888764
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-17 Score=141.47 Aligned_cols=130 Identities=25% Similarity=0.333 Sum_probs=108.3
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVN 132 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~ 132 (959)
+-+.++++...|.+..+. ...+|+.+.++++|++|++.+|+|+.+|.+++.+.+||.|+++-|++..+|..||
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 344566677777776665 6778888999999999999999999999999999999999999998888899999
Q ss_pred ccccccEEeccCcchh-hhhhHhhhcccccceeecCCCCcccccccccccccCCceece
Q 002156 133 KLYNLHTLLLEDCREL-KKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
.++.|++|||++|+.- ..+|..|..++.|+-|++++|. .+.+|.++++|++||.|.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSL 157 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEee
Confidence 9999999999886543 3578888889999999999998 8888988999998888743
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-14 Score=162.17 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCC
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSN 168 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (959)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. .++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 345678888888888887665 3788888888888888753 467788888774 66666642 35677777777
Q ss_pred CCcccccc
Q 002156 169 TDSLEEMP 176 (959)
Q Consensus 169 ~~~~~~~p 176 (959)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 76 55554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=170.82 Aligned_cols=150 Identities=27% Similarity=0.304 Sum_probs=113.1
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCC--Cccccc-cccccCcccEEeccCC-CCcccc
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYH--IFELPD-SIGDLRYLRYLNLSGT-HIRALP 128 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~-~~~~l~~L~~L~L~~n-~i~~lp 128 (959)
+........|...+..+. ...++.+. ..+.|++|-+.+|. +..++. .|..++.|++|||++| .+.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~-------~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNK-------IEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccc-------hhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 444455677888777765 23333333 33379999999986 666754 5889999999999988 578999
Q ss_pred hhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEec-cCCCCChhhhhhh
Q 002156 129 ESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG-KDSGSGLSELKLL 207 (959)
Q Consensus 129 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L 207 (959)
+.|++|.+||+|++++ +.+..+|.++++|++|.+|++..+.....+|..+..|++||+|.++... ..+...+.++..|
T Consensus 589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 9999999999999999 7899999999999999999999988666665556779999999876554 2223344444444
Q ss_pred hhcc
Q 002156 208 MHLR 211 (959)
Q Consensus 208 ~~L~ 211 (959)
++|+
T Consensus 668 e~L~ 671 (889)
T KOG4658|consen 668 EHLE 671 (889)
T ss_pred cchh
Confidence 4333
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-15 Score=152.30 Aligned_cols=115 Identities=26% Similarity=0.317 Sum_probs=98.7
Q ss_pred ccccccc-CCCCCceeEEEecCCCCccc-cccccccCcccEEeccC-CCCcccch-hhhccccccEEeccCcchhhhh-h
Q 002156 78 AYSILPK-LFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSG-THIRALPE-SVNKLYNLHTLLLEDCRELKKL-C 152 (959)
Q Consensus 78 ~~~~~~~-~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p 152 (959)
+..+|+. |+.+++||.||||.|.|+.| |++|.++..|-.|-+.+ |+|+++|. .|++|..|+.|.+.-| .+.-+ .
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhH
Confidence 6777766 59999999999999999999 89999999998888887 89999985 5799999999999985 45555 4
Q ss_pred HhhhcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 153 ADMGNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 153 ~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
..|..|++|..|.+.+|. +..++.+ +..+..++++.+..+.
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 559999999999999998 8999875 8889999988665544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-14 Score=160.60 Aligned_cols=225 Identities=23% Similarity=0.312 Sum_probs=128.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
+.|+.|++++|.+. .+|..+ .++|++|++++|. ++.+|. ..+++|+.|++++|... .+|..+ ..+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSINRIT-ELPERL----PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCc-cccCCh-hhhccccEEECcCCccC-cCChhH----hCCCCEEE
Confidence 56667777666554 345433 2467777777663 444553 22446777777776643 445433 13566666
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++| .++.+|. .++.+|+.|++++| +++.+| .
T Consensus 269 Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP-----------------------------------------~---- 300 (754)
T PRK15370 269 LFHN-KISCLPE-NLPEELRYLSVYDN-SIRTLP-----------------------------------------A---- 300 (754)
T ss_pred CcCC-ccCcccc-ccCCCCcEEECCCC-ccccCc-----------------------------------------c----
Confidence 6643 3444433 23334444444443 222222 0
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
.+|++|+.|++++|.+.. +|..+ .++|+.|++++|.+.+ +|..+ .++|+.|++++|. +..+|..+. +
T Consensus 301 ----~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp--~ 367 (754)
T PRK15370 301 ----HLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ-ITVLPETLP--P 367 (754)
T ss_pred ----cchhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC-CCcCChhhc--C
Confidence 112356666666665543 33222 2567777777776543 55544 3678888888874 445665442 5
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc----CCCCCCcceEEccCCch
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE----DGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~ 831 (959)
+|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|.. .+..+++..|++.+|+.
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 7888888888765 4454443 36888888888776 44443 33457778888888864
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-15 Score=133.54 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=129.6
Q ss_pred CeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcc
Q 002156 35 NLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 114 (959)
Q Consensus 35 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L 114 (959)
.+.++.+.++....+ .+.+.++.+|++|.++++. ..++|.+++.+++||.|++.-|++..+|..|+.++.|
T Consensus 34 ~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 466777777766443 3677888999999887765 7889999999999999999999998899999999999
Q ss_pred cEEeccCCCCc--ccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEE
Q 002156 115 RYLNLSGTHIR--ALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFV 192 (959)
Q Consensus 115 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 192 (959)
++|||.+|++. .+|..|..++.|+-|.|++ +..+.+|.++++|++|+.|.+.+|. +-++|.+++.|++|++|.+..
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc
Confidence 99999999886 6799999999999999999 6899999999999999999999998 889999999999999997654
Q ss_pred e
Q 002156 193 V 193 (959)
Q Consensus 193 ~ 193 (959)
+
T Consensus 183 n 183 (264)
T KOG0617|consen 183 N 183 (264)
T ss_pred c
Confidence 4
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=158.79 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=38.0
Q ss_pred CcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCcccc
Q 002156 557 SLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFG 622 (959)
Q Consensus 557 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 622 (959)
+...|+++++ .++.+|.. .++.++.|++++|.. +.+|..+ .++|++|++++|. ++.++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~L-tsLP~~l----~~nL~~L~Ls~N~-LtsLP 236 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNEL-KSLPENL----QGNIKTLYANSNQ-LTSIP 236 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCCC-CcCChhh----ccCCCEEECCCCc-cccCC
Confidence 5678888887 45566642 356889999988864 4566543 2578888887743 44443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-13 Score=148.23 Aligned_cols=158 Identities=21% Similarity=0.162 Sum_probs=88.0
Q ss_pred CCCceEeeccChhh----HHHHHhhcCCCCccEEeecccCCCc----ccCccccCCCCcceeecccccccc----ccCCC
Q 002156 699 PSLKSLGVFECSKL----ESIAERLDNNTSLEIISIGSCGNLK----ILPSGLHNLCQLQEIEIWNCGNLV----SFPEG 766 (959)
Q Consensus 699 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~l~----~~~~~ 766 (959)
++|++|++++|.+. ..++..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.... .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45666666666654 2344455666677777777766553 223334445677777777774321 12233
Q ss_pred CCCCCCccEEEecCCcCcCcccccc-----CCCCccceeeeccCCCCC----CCcccCCCCCCcceEEccCCchhhhhhh
Q 002156 767 GLPCAKLMRLEIYGCERLEALPKGL-----HNLTSLQELRIGRGVELP----SLEEEDGLPTNLQSLDIWGNIEIWKSMI 837 (959)
Q Consensus 767 ~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 837 (959)
+..+++|++|++++|.+.+.....+ ...+.|+.|++++|.+.. .+...+..+++|+.+++++|........
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 4456677777777776554221211 123677777777776651 2233344557777777777765544333
Q ss_pred hhccCCCCC-CCccEEEEcc
Q 002156 838 ERGRGFHGF-SSLRRLEIRG 856 (959)
Q Consensus 838 ~~~~~~~~l-~~L~~L~l~~ 856 (959)
.....+... +.|++|++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 297 LLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHhhcCCchhhcccCC
Confidence 322334444 5666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-13 Score=147.89 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=16.8
Q ss_pred CCCceEeeccCCCC----cccccccCCCCCCcEEecCCC
Q 002156 868 ASLTSLEISFFPNL----ERLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 868 ~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c 902 (959)
..|++|++++|..- ..+...+..+++|+++++++|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 34555555554211 123334444566666666664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-10 Score=104.07 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=54.3
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCC-CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
+.+.+..++|.|.+.++. ... .+.+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|+|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~-------I~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ-------IST-IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc-------ccc-ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 334455677888887764 233 34564 6889999999999999884 5888999999999999999987666
Q ss_pred -hccccccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceeceEEec
Q 002156 132 -NKLYNLHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
..+++|++|++++| .+..+- ..+..+++|++|++.+|. +...+. -|..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 46899999999984 555543 237788999999999998 666553 26788888888765554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-11 Score=122.14 Aligned_cols=300 Identities=16% Similarity=0.275 Sum_probs=148.1
Q ss_pred ccceEEEecCCCCCC--ccccccCCCCcceeeeccCCCcccCC---CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 533 RLEYLTLSGCQGLVK--LPQSSLSLSSLREIVIYKCSSLVSFP---EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.|+.|.+++|.-.+. +-....++|++++|.+.+|..++... ....+++|+.|++..|..++..........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 344555555443331 11233456666666666666544321 1234666777777776666554444333677778
Q ss_pred cEEEEecCCCCccccCCCCC---CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCC
Q 002156 608 EILTISSCHSLTYFGGVQLP---RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684 (959)
Q Consensus 608 ~~L~l~~c~~l~~~~~~~~~---~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 684 (959)
++|++++|+.+..-....+. ..++.+...+|..++.-.+. .....+..+.++++..|..+++.-
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~---------~~~~~~~~i~~lnl~~c~~lTD~~---- 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL---------KAAAYCLEILKLNLQHCNQLTDED---- 285 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH---------HHhccChHhhccchhhhccccchH----
Confidence 88888887766541110000 11333333334332211100 000112234444555555554410
Q ss_pred cchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCccEEeecccCCCccc--CccccCCCCcceeeccccccc
Q 002156 685 LPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSLEIISIGSCGNLKIL--PSGLHNLCQLQEIEIWNCGNL 760 (959)
Q Consensus 685 ~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~l 760 (959)
+ ..+......|+.|+.++|...+ .+..-..++.+|+.|.++.|+..+.. ..--.+++.|+.+++.+|...
T Consensus 286 ----~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 286 ----L--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred ----H--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 0 0011111356666666666543 23333456677777777777654432 111235677777777776443
Q ss_pred cc--cCCCCCCCCCccEEEecCCcCcCcc-----ccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCchh
Q 002156 761 VS--FPEGGLPCAKLMRLEIYGCERLEAL-----PKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 761 ~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.. +-....+|+.|++|.+++|...... ...-..+..|+.+.+++|+.... .-+.+..+++|+.+++.+|..+
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 32 2223345677777777777654333 12223455666677776665422 2233455666776777666655
Q ss_pred hhhhhhhccCCCCCCCccEEE
Q 002156 833 WKSMIERGRGFHGFSSLRRLE 853 (959)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~~L~ 853 (959)
+...+. ..-.++++++...
T Consensus 440 tk~~i~--~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 440 TKEAIS--RFATHLPNIKVHA 458 (483)
T ss_pred hhhhhH--HHHhhCccceehh
Confidence 544433 2224455555543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-09 Score=119.29 Aligned_cols=108 Identities=30% Similarity=0.436 Sum_probs=86.5
Q ss_pred cccCCCCCceeEEEecCCCCccccccccccC-cccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccc
Q 002156 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIK 160 (959)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 160 (959)
+..+..++.++.|++.++.++++|.....+. +|+.|++++|++..+|..++.+++|+.|++++ +.+..+|...+.+++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhh
Confidence 3344566788888888888888887777775 88888888888888888888888888888888 578888877778888
Q ss_pred cceeecCCCCcccccccccccccCCceeceE
Q 002156 161 LHHHNNSNTDSLEEMPLGIGKLTCLQTLCNF 191 (959)
Q Consensus 161 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 191 (959)
|+.|++++|. +..+|..++.+..|++|...
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 8888888888 88888777666667776543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.8e-10 Score=103.36 Aligned_cols=102 Identities=27% Similarity=0.385 Sum_probs=36.7
Q ss_pred CCCCCceeEEEecCCCCcccccccc-ccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhh-hcccccc
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADM-GNLIKLH 162 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~ 162 (959)
+.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|+|+.+ +.+..+++|++|++++ +.+..++..+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence 345567899999999999984 566 689999999999999999 4688999999999999 5788886666 4799999
Q ss_pred eeecCCCCccccccc--ccccccCCceece
Q 002156 163 HHNNSNTDSLEEMPL--GIGKLTCLQTLCN 190 (959)
Q Consensus 163 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~~ 190 (959)
+|++++|+ +..+.. .++.+++|+.|++
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 99999998 766532 2455666666644
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-10 Score=118.28 Aligned_cols=261 Identities=19% Similarity=0.256 Sum_probs=116.1
Q ss_pred ccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcc--ccccCCCCcceeeeccCCCcccC-
Q 002156 496 QDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLP--QSSLSLSSLREIVIYKCSSLVSF- 572 (959)
Q Consensus 496 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~- 572 (959)
...|+++.|.+.+|.+++.. ....+...+++|++|++..|....... .....+++|++|+++.|+.+..-
T Consensus 161 ~~CpnIehL~l~gc~~iTd~-------s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDS-------SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHH-------HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 45556666666666555432 222333345666666666655433211 12234666666666666655431
Q ss_pred --CCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCC---CCCccEEEeecCCCccccccc
Q 002156 573 --PEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQL---PRSLKQLDILSCDNIRTLTVE 647 (959)
Q Consensus 573 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~L~~l~~~ 647 (959)
+-......++++...+|...+.-....++..++-+.++++.+|..+++.....+ ...++.++.++|..+...++.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 112234445556555665544332222224555566666666665555432211 133455555555544433321
Q ss_pred ccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCc
Q 002156 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSL 725 (959)
Q Consensus 648 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L 725 (959)
.- ...+++|+.+.+..|..+++. ..- .++.-.+.|+.+++..|.... .+...-.+|+.|
T Consensus 314 aL---------g~~~~~L~~l~l~~c~~fsd~-~ft---------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 314 AL---------GQHCHNLQVLELSGCQQFSDR-GFT---------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HH---------hcCCCceEEEeccccchhhhh-hhh---------hhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 10 112345555555555554431 000 011111355555555554322 223333455555
Q ss_pred cEEeecccCCCccc-----CccccCCCCcceeeccccccccc-cCCCCCCCCCccEEEecCCc
Q 002156 726 EIISIGSCGNLKIL-----PSGLHNLCQLQEIEIWNCGNLVS-FPEGGLPCAKLMRLEIYGCE 782 (959)
Q Consensus 726 ~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~ 782 (959)
+++.+++|..+++. ...-..+..|+.+.+++|+.+.. .-+....|++|+.+++-+|+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 55555555544432 22223344455555555544332 11122334444444444443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-10 Score=122.68 Aligned_cols=107 Identities=26% Similarity=0.453 Sum_probs=64.4
Q ss_pred ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc
Q 002156 79 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
.++|..+..+..|..+.|..|.+..+|.++.++..|.+|||+.|++..+|..+..|+ |++|-+++ ++++.+|.+|+.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccc
Confidence 455555555556666666666666666666666666666666666666666655554 56666665 4566666666655
Q ss_pred cccceeecCCCCcccccccccccccCCcee
Q 002156 159 IKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 159 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
..|.+||.+.|. +..+|..++.|.+|+.|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 566666666665 55666656655555555
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.2e-10 Score=113.35 Aligned_cols=130 Identities=21% Similarity=0.156 Sum_probs=63.2
Q ss_pred CCCccEEEecCCcCcCc-cccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 770 CAKLMRLEIYGCERLEA-LPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++.|+.|.+++|.+... +-.....+|+|+.|++.+|.....-......+..|++|||++|+.+.... +.....++.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---GYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---ccccccccc
Confidence 34455555555544311 11122344555555555553222222223334555555555554433221 123344555
Q ss_pred ccEEEEcccCCCccccc---------CCCCCceEeeccCCCCccccc--ccCCCCCCcEEecCCCc
Q 002156 849 LRRLEIRGCDDDMVSFP---------LPASLTSLEISFFPNLERLSS--SIVDLQILTELRLYHCR 903 (959)
Q Consensus 849 L~~L~l~~~~~~~~~~~---------~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~ 903 (959)
|+.|+++.|....+.++ ..++|+.|++..| .+...+. .+..+.+|+.|.+..+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 55555555544433332 4567777777774 4555443 56667777777766543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-09 Score=111.87 Aligned_cols=110 Identities=18% Similarity=0.093 Sum_probs=48.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCccc-CccccCCCCcceeeccccccccc-cCCC-----CCCCC
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKIL-PSGLHNLCQLQEIEIWNCGNLVS-FPEG-----GLPCA 771 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~-~~~~-----~~~~~ 771 (959)
|+|+.|++.+|............++.|+.|+|++|+++... -...+.++.|+.|+++.|..... +|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 45555666555432222222334455555555555554422 12234555555555555532221 2221 12345
Q ss_pred CccEEEecCCcCcCcc-ccccCCCCccceeeeccCCCC
Q 002156 772 KLMRLEIYGCERLEAL-PKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 808 (959)
+|++|++..|++.+-- -..+..+++|+.|.+..|++.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555555555542111 122333444455554444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-09 Score=104.01 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=98.1
Q ss_pred ccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCC
Q 002156 741 SGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTN 820 (959)
Q Consensus 741 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 820 (959)
..+..+..|+++|+++| .++.+-++..-.|+++.|++++|.+... +.+..+++|+.||+|+|.+. .+...-..+.|
T Consensus 278 ~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 34556788999999998 5666777778889999999999987654 34778899999999999776 33322335788
Q ss_pred cceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccccc--ccCCCCCCcEEe
Q 002156 821 LQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS--SIVDLQILTELR 898 (959)
Q Consensus 821 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~ 898 (959)
++.|.+++|. ++...++..+.+|..|++++ ++++.+.+ ++++++-|+++.
T Consensus 354 IKtL~La~N~------iE~LSGL~KLYSLvnLDl~~----------------------N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 354 IKTLKLAQNK------IETLSGLRKLYSLVNLDLSS----------------------NQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred Eeeeehhhhh------HhhhhhhHhhhhheeccccc----------------------cchhhHHHhcccccccHHHHHh
Confidence 8999999885 22224455566666666666 56776654 889999999999
Q ss_pred cCCCcC
Q 002156 899 LYHCRK 904 (959)
Q Consensus 899 l~~c~~ 904 (959)
+.+||.
T Consensus 406 L~~NPl 411 (490)
T KOG1259|consen 406 LTGNPL 411 (490)
T ss_pred hcCCCc
Confidence 999875
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-10 Score=117.87 Aligned_cols=106 Identities=27% Similarity=0.268 Sum_probs=93.6
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
..+.--...||+.|++..+|..++.+..|+.|.|+.|.|..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|-
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEE
Confidence 46666778899999999999999999999999999999999999999999999999999 68999999888775 88999
Q ss_pred cCCCCcccccccccccccCCceeceEEec
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 194 (959)
+++|+ ++.+|.+|+-+..|.+|+...+.
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhh
Confidence 99998 99999999988888888655444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-08 Score=100.89 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=95.7
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCc
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTS 796 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 796 (959)
..+..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|..+. ++|+.|++++|..+..+|. +
T Consensus 46 ~r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence 34566788999999988 5555662 245699999998888888876442 5888888888865655553 5
Q ss_pred cceeeeccCCCC--CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 797 LQELRIGRGVEL--PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 797 L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
|+.|+++++... +.+| ++|+.|.+.++..... ......+|++|+.|+
T Consensus 114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~-------------------------~~lp~~LPsSLk~L~ 162 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQ-------------------------ARIDNLISPSLKTLS 162 (426)
T ss_pred cceEEeCCCCCcccccCc------chHhheeccccccccc-------------------------cccccccCCcccEEE
Confidence 667777654432 2233 4566666644321000 000012455666666
Q ss_pred eccCCCCcccccccCCCCCCcEEecCCCcC-CCCCCCCCCccccceeeccCChhHHH
Q 002156 875 ISFFPNLERLSSSIVDLQILTELRLYHCRK-LKYFPKKGLPSSLLRLWIEGCPLIEE 930 (959)
Q Consensus 875 l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~L~~L~l~~c~~l~~ 930 (959)
+++|..+ .+|..+. .+|+.|+++.+.. ...++...+|+++ .|++.+|-++..
T Consensus 163 Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 163 LTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 6665533 2333332 4666666655321 1233444456666 666666654433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-08 Score=112.46 Aligned_cols=125 Identities=25% Similarity=0.333 Sum_probs=106.9
Q ss_pred cccCCcccEEeccccCCCCCCcccccccccCCCCC-ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhc
Q 002156 55 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNK 133 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~ 133 (959)
..+.+.++.|.+.++. ...+++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3445678888777665 577777778885 99999999999999998999999999999999999999988889
Q ss_pred cccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 134 LYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+.+|+.|++++ +.+..+|..++.+..|++|.+++|. +..++..+++++++..|
T Consensus 185 ~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 99999999999 6899999888888999999999997 56666667777666655
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-08 Score=99.00 Aligned_cols=103 Identities=28% Similarity=0.373 Sum_probs=49.2
Q ss_pred cCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
+..-++.+|+|++|+|.|..+- .+..|++|+.||||+|.+.++-..-.+|-|.++|.|+. +.++.+ +++++|.+|..
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L-SGL~KLYSLvn 378 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETL-SGLRKLYSLVN 378 (490)
T ss_pred hhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhh-hhhHhhhhhee
Confidence 3344444444444444444442 24444444444444444444433333444444444444 234433 24555666666
Q ss_pred eecCCCCcccccc--cccccccCCceece
Q 002156 164 HNNSNTDSLEEMP--LGIGKLTCLQTLCN 190 (959)
Q Consensus 164 L~l~~~~~~~~~p--~~i~~L~~L~~L~~ 190 (959)
||+++|+ +..+- .+||+|+.|+++.+
T Consensus 379 LDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 379 LDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred ccccccc-hhhHHHhcccccccHHHHHhh
Confidence 6666665 55443 33666666665543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-08 Score=113.19 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=75.5
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
++.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666777777777777777777766666776677777777777777777777777777777777777777
Q ss_pred CCCCCCCcccCCC-CCCcceEEccCCch
Q 002156 805 GVELPSLEEEDGL-PTNLQSLDIWGNIE 831 (959)
Q Consensus 805 n~~~~~~~~~~~~-~~~L~~L~l~~n~~ 831 (959)
|.+.+.+|..++. ..++..+++.+|+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 7777777766554 24566777777754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-08 Score=74.06 Aligned_cols=57 Identities=30% Similarity=0.510 Sum_probs=44.3
Q ss_pred CceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCc
Q 002156 89 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDC 145 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~ 145 (959)
++|++|++++|+++.+| .+|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46788888888888875 47788888888888888888774 46788888888888875
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-07 Score=110.38 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=102.0
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCcCcCccccccCCC-CccceeeeccCCCCCCCc
Q 002156 780 GCERLEALPKGLHNL-TSLQELRIGRGVELPSLE 812 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~ 812 (959)
+|.+.+.+|..++.. .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999888653 577889999997664444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=90.80 Aligned_cols=115 Identities=23% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
..++.|++++| .+..+| .--.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|. +|+.|++
T Consensus 52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 58999999999 455556 223479999999999998888766 47999999999987777774 6888888
Q ss_pred cCCcC--cCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 779 YGCER--LEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 779 ~~~~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
.++.. ++.+|. +|+.|.+.++......+.....+++|++|++++|..
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 76543 344443 677888854332111110112347888888888864
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=69.69 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=25.6
Q ss_pred CcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCC
Q 002156 748 QLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGV 806 (959)
Q Consensus 748 ~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 806 (959)
+|++|++++|. ++.+| ..+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444442 22222 233444444444444444443334444444444444444443
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-08 Score=106.75 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=96.3
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhc
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGN 157 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 157 (959)
...+...+..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++ +.+..++ .+..
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLES 160 (414)
T ss_pred hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCcc
Confidence 34445567899999999999999999866688999999999999999988 5678888899999999 4666664 5777
Q ss_pred ccccceeecCCCCcccccccc-cccccCCceeceEEeccCCCCChhhhhhh
Q 002156 158 LIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSGLSELKLL 207 (959)
Q Consensus 158 L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L 207 (959)
++.|+.+++++|. +..+... ...+.+++.+.+..+.......+..+..+
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l 210 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKL 210 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHH
Confidence 9999999999998 7777654 47777777776655544444444444433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-07 Score=93.66 Aligned_cols=189 Identities=17% Similarity=0.141 Sum_probs=123.2
Q ss_pred HHhhcCCCCccEEeecccCCCcccC----ccccCCCCcceeecccccccccc-------------CCCCCCCCCccEEEe
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILP----SGLHNLCQLQEIEIWNCGNLVSF-------------PEGGLPCAKLMRLEI 778 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p----~~~~~l~~L~~L~l~~~~~l~~~-------------~~~~~~~~~L~~L~l 778 (959)
.+++..+++|++|+||+|-+--.-+ .-+.++..|++|++.+|..-..- .....+-++|+++..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3445556666666666664432221 22345666777777666321100 011233578999999
Q ss_pred cCCcCcCcc----ccccCCCCccceeeeccCCCCCC----CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 779 YGCERLEAL----PKGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 779 ~~~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
..|++-... ...+...+.|+.+.++.|.+... +...+..+++|++|||.+|-............+..|+.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 999854322 23456778999999999977532 2345678999999999999877666655566788899999
Q ss_pred EEEEcccCCCcccc--------cCCCCCceEeeccCCCCcc----cccccCCCCCCcEEecCCCcC
Q 002156 851 RLEIRGCDDDMVSF--------PLPASLTSLEISFFPNLER----LSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 851 ~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~c~~ 904 (959)
.|++++|......- ...++|+.|.+.+|..-.. +-..+...+.|+.|+|++|..
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999984332211 1467899999999643322 233566688999999999754
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-08 Score=96.75 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=106.2
Q ss_pred CCceEeeccChhhH-HHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC--CCCCCCCccEE
Q 002156 700 SLKSLGVFECSKLE-SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRL 776 (959)
Q Consensus 700 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 776 (959)
.++.||+++-.+.. .+...+..|++|+.|.+.+++..+.+-..+..-.+|+.|+|+.|...++... -+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888888766654 4566678888899998888888777777778888888888888877664322 23466777777
Q ss_pred EecCCcCcCcccc-cc-CCCCccceeeeccCCCC---CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 777 EIYGCERLEALPK-GL-HNLTSLQELRIGRGVEL---PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 777 ~l~~~~~~~~~~~-~~-~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+++.|......-. .+ +--+.|+.|+++|+.-. ..+..-...+++|..||||+|..++.... ..+..++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH---HHHHhcchhee
Confidence 7777765433211 11 11245666666665321 11121223566666666666655443222 22334444444
Q ss_pred EEEcccCCCcccccCCCCCceEeeccCCCCccccc---ccCCCCCCcEEecCCCc
Q 002156 852 LEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS---SIVDLQILTELRLYHCR 903 (959)
Q Consensus 852 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c~ 903 (959)
|.+ ++|-. .+|. .+...++|.+|++.+|-
T Consensus 343 lSl---------------------sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSL---------------------SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeh---------------------hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 444 44422 1222 55667788888887763
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-08 Score=97.17 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCc--ccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE--EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
.|.+|+.|.+.++++.+.+...++.-.+|+.|+++.|....... -.+..++.|.+|+++.|......... ..-.--
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~his 285 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHIS 285 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhc
Confidence 34455555555555444444444444455555555544332211 12334555555555555432222110 000112
Q ss_pred CCccEEEEcccCCCcccc------cCCCCCceEeeccCCCCcc-cccccCCCCCCcEEecCCCcCCCCCCCC----CCcc
Q 002156 847 SSLRRLEIRGCDDDMVSF------PLPASLTSLEISFFPNLER-LSSSIVDLQILTELRLYHCRKLKYFPKK----GLPS 915 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~~ 915 (959)
.+|+.|+++||..+...- .-.+.|.+||++.|..++. .-..+..|+.|++|.++.|-.+ +|+. .-.|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 355566666654332221 1467788888888888875 2237889999999999999654 2221 1258
Q ss_pred ccceeeccCCh
Q 002156 916 SLLRLWIEGCP 926 (959)
Q Consensus 916 ~L~~L~l~~c~ 926 (959)
+|..|++.||-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 99999999983
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-07 Score=92.29 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=157.2
Q ss_pred CCCceEeeccChhhH----HHHHhhcCCCCccEEeecccCCCc----ccC-------ccccCCCCcceeecccccccccc
Q 002156 699 PSLKSLGVFECSKLE----SIAERLDNNTSLEIISIGSCGNLK----ILP-------SGLHNLCQLQEIEIWNCGNLVSF 763 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~p-------~~~~~l~~L~~L~l~~~~~l~~~ 763 (959)
.+++++++++|.+-. .+...+.+-++|+..++++- +.| .+| ..+..++.|++|+||+|..-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 588999999998755 46677888899999999873 222 223 34566889999999999765444
Q ss_pred CC----CCCCCCCccEEEecCCcCcCccc-------------cccCCCCccceeeeccCCCCCC----CcccCCCCCCcc
Q 002156 764 PE----GGLPCAKLMRLEIYGCERLEALP-------------KGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQ 822 (959)
Q Consensus 764 ~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~ 822 (959)
++ -+.++..|++|.+.+|.+...-- .-.+.-+.|+++..+.|.+... +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 43 23568999999999997542211 1123457999999999987632 233466779999
Q ss_pred eEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccc-------ccCCCCCceEeeccCCCCcc----cccc-cCC
Q 002156 823 SLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS-------FPLPASLTSLEISFFPNLER----LSSS-IVD 890 (959)
Q Consensus 823 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~----l~~~-~~~ 890 (959)
.+.++.|.............+..+++|+.|++.++...... .+..+.|++|++++|..-.. +-.. -..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 99999998666555444467888999999999986433332 22456899999999853321 2212 234
Q ss_pred CCCCcEEecCCCcCCCC------CCCCCCccccceeeccCChh
Q 002156 891 LQILTELRLYHCRKLKY------FPKKGLPSSLLRLWIEGCPL 927 (959)
Q Consensus 891 l~~L~~L~l~~c~~l~~------l~~~~~~~~L~~L~l~~c~~ 927 (959)
.++|++|.+.+|..-.. .+-.. .+.|.+|++.+|..
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 78999999999753211 01011 47799999998864
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-06 Score=60.84 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccc
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP 128 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp 128 (959)
++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777666777777777777777776653
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-07 Score=100.98 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=86.9
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
..+..+..+.+..|.|..+-..++.+++|.+|++.+|+|..+...+..+.+|++|++++ +.+..+. .+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhe
Confidence 35677777889999998865679999999999999999999965589999999999999 5677764 688888999999
Q ss_pred cCCCCcccccccccccccCCceeceEEecc
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 195 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 195 (959)
+++|. +..+ .++..++.|+.+++..+..
T Consensus 147 l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 147 LSGNL-ISDI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eccCc-chhc-cCCccchhhhcccCCcchh
Confidence 99998 7776 3566678888776655543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.3e-06 Score=57.44 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=26.9
Q ss_pred CcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh
Q 002156 112 RYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL 151 (959)
Q Consensus 112 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (959)
++|++|++++|+|+++|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4677888888888877777778888888888774 44444
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-06 Score=74.12 Aligned_cols=90 Identities=22% Similarity=0.243 Sum_probs=52.0
Q ss_pred CCCCceeEEEecCCCCcccccccc-ccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
.+..+|...+|++|.+.++|..|. +.+..++|+|++|.|.++|.++..++.|+.|+++. +.+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 455556666666666666655443 33356666666666666666666666666666665 3455555555556666666
Q ss_pred ecCCCCccccccc
Q 002156 165 NNSNTDSLEEMPL 177 (959)
Q Consensus 165 ~l~~~~~~~~~p~ 177 (959)
+..+|. ...+|.
T Consensus 129 ds~~na-~~eid~ 140 (177)
T KOG4579|consen 129 DSPENA-RAEIDV 140 (177)
T ss_pred cCCCCc-cccCcH
Confidence 665555 444443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-07 Score=96.40 Aligned_cols=118 Identities=25% Similarity=0.170 Sum_probs=93.2
Q ss_pred CceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHh-hhcccccceeecC
Q 002156 89 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNS 167 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~ 167 (959)
-.|.+.++++|.+..+..++.-++.|+.|+|++|+++++ +.+..|++|++|||++ |.+..+|.- ...++ |+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhccccccccccc-chhccccccchhhhh-heeeeec
Confidence 457888899999988888899999999999999999988 5889999999999999 578888753 33444 9999999
Q ss_pred CCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcc
Q 002156 168 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLR 211 (959)
Q Consensus 168 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 211 (959)
+|. ++.+ .+|.+|++|+.|++..+-......+.-|..|..|+
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 998 7777 68999999999988766555444444444444444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=7e-06 Score=70.68 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCceeEEEecCCCCcccccc---ccccCcccEEeccCCCCcccchhhh-ccccccEEeccCcchhhhhhHhhhcccccc
Q 002156 87 KLQRLRAFSLRGYHIFELPDS---IGDLRYLRYLNLSGTHIRALPESVN-KLYNLHTLLLEDCRELKKLCADMGNLIKLH 162 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~---~~~l~~L~~L~L~~n~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 162 (959)
.-+.+..+||+.|.+..+++. +.+.++|...+|++|.+.+.|..|. ..+-..+|++++ +.+..+|.++..++.|+
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 344566778888877766543 4566777777888888888887774 445788888887 57888888888888888
Q ss_pred eeecCCCCcccccccccccccCCceeceE
Q 002156 163 HHNNSNTDSLEEMPLGIGKLTCLQTLCNF 191 (959)
Q Consensus 163 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 191 (959)
.|+++.|. +...|.-|..|.+|-.|+..
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 88888887 77777777777777777543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.4e-05 Score=75.59 Aligned_cols=187 Identities=13% Similarity=0.033 Sum_probs=104.0
Q ss_pred CCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCc-cccccCCCCcc
Q 002156 721 NNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEA-LPKGLHNLTSL 797 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L 797 (959)
.++.++.+++.+|.+.. .+...+..+|.|++|+|+.|+....|...-....+|++|-+.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666666666665433 3334455666677777766654433322223445666666666543211 12234566677
Q ss_pred ceeeeccCCCCCCCc--ccC-CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc----cccCCCCC
Q 002156 798 QELRIGRGVELPSLE--EED-GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV----SFPLPASL 870 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~--~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~L 870 (959)
+.|+++.|......- ... .-.+.+.+|..-+|......... ..-..++++..+.+..|-.... .+...+++
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 777777663221100 001 12346666666677544332221 1223467888888877633322 22355666
Q ss_pred ceEeeccCCCCccccc--ccCCCCCCcEEecCCCcCCCCCCC
Q 002156 871 TSLEISFFPNLERLSS--SIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 871 ~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
-.|+++. +++.+..+ .+..|++|.-|.+.++|....+..
T Consensus 227 ~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 227 SCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 6777777 46666554 677888888899988887766644
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=68.33 Aligned_cols=105 Identities=24% Similarity=0.242 Sum_probs=81.6
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh-hccccccEEeccCcchhhhhhH--hhhcccccce
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHH 163 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 163 (959)
-+.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-..+ .-+++|.+|.|.+ +.+..+-+ .+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence 3446778899999998884 5889999999999999999995555 5677899999998 46666543 2678889999
Q ss_pred eecCCCCccccccc----ccccccCCceeceEEec
Q 002156 164 HNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 164 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
|.+-+|. ++.-+. -+.++++|++|+...+.
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998 666552 27888899988765443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=1.2e-05 Score=88.14 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=70.4
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
.++.=++.||.|.+..|.. .....+..+++|+.|||++|.++.+|. +...++ |+.|.|++|.++++ ..|
T Consensus 181 ~SLqll~ale~LnLshNk~--------~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gi 250 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKF--------TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGI 250 (1096)
T ss_pred HHHHHHHHhhhhccchhhh--------hhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhH
Confidence 3444556777777666541 222345777777777777777777765 223333 77777777777777 567
Q ss_pred hccccccEEeccCcchhhhhhH--hhhcccccceeecCCCCcccccc
Q 002156 132 NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTDSLEEMP 176 (959)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p 176 (959)
.+|.+|+.||+++| .+...-+ -+..|..|+.|+|-||. +.--|
T Consensus 251 e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 77777777777773 4433321 25667777777777776 44433
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=71.59 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=48.8
Q ss_pred ccccceEEEecCCCCC--CccccccCCCCcceeeeccCCCcccCCCC-cCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 531 SCRLEYLTLSGCQGLV--KLPQSSLSLSSLREIVIYKCSSLVSFPEV-ALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.+.++.+++.+|.+.. .+...+.++|.|+.|+++.|+....|... ....+|++|-+.+....-.-...+. ..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcchhh
Confidence 3677788888887755 33445667888888888888655444333 2345666666665543221111111 455666
Q ss_pred cEEEEec
Q 002156 608 EILTISS 614 (959)
Q Consensus 608 ~~L~l~~ 614 (959)
++|+++.
T Consensus 149 telHmS~ 155 (418)
T KOG2982|consen 149 TELHMSD 155 (418)
T ss_pred hhhhhcc
Confidence 6666665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=1.1e-05 Score=92.90 Aligned_cols=193 Identities=23% Similarity=0.303 Sum_probs=91.2
Q ss_pred cCCCCccEEeecccCCCccc--CccccCCCCcceeeccccccccc--cCCCCCCCCCccEEEecCCcCcCc--cccccCC
Q 002156 720 DNNTSLEIISIGSCGNLKIL--PSGLHNLCQLQEIEIWNCGNLVS--FPEGGLPCAKLMRLEIYGCERLEA--LPKGLHN 793 (959)
Q Consensus 720 ~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 793 (959)
..+.+|+.|+++.+..+++. ......+++|++|.+.+|..++. +-.....+++|++|++++|..... +.....+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 34455566666555533221 11112255666666555543211 222233455566666666554321 1111223
Q ss_pred CCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhh-hhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCce
Q 002156 794 LTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIW-KSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 794 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
+++|+.|.+..... +..++.+.+.++.... +... ......+++++.+.+.+|. ....+ ..
T Consensus 320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~--~~~~~~~~~l~~~~l~~~~-~~~~~------~~ 380 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLA--ELILRSCPKLTDLSLSYCG-ISDLG------LE 380 (482)
T ss_pred CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHh--HHHHhcCCCcchhhhhhhh-ccCcc------hH
Confidence 44444443332211 3344444444333221 0111 1234455666666666543 21111 14
Q ss_pred EeeccCCCC-cccccccCCCCCCcEEecCCCcCCCCCCCCCC---ccccceeeccCChhHHHH
Q 002156 873 LEISFFPNL-ERLSSSIVDLQILTELRLYHCRKLKYFPKKGL---PSSLLRLWIEGCPLIEEK 931 (959)
Q Consensus 873 L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~~l~~~ 931 (959)
+.+.+|+.+ ..+........+++.|+++.|...+.-..... ...++.+++.+|+.+...
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 566777777 44443444444588888888876554332211 445777888888776554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00014 Score=84.51 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=36.2
Q ss_pred CCCCceeEEEecCCCCcc--ccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhh--hHhhhccccc
Q 002156 86 FKLQRLRAFSLRGYHIFE--LPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL--CADMGNLIKL 161 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L 161 (959)
..+++||.|.+++-.+.. +-....++++|+.||+|+++|+.+ ..+++|++|++|.+.+ -.+..- -.++.+|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCC
Confidence 445555555554433321 112233444555555555555544 4455555555555443 222211 1224445555
Q ss_pred ceeecCCC
Q 002156 162 HHHNNSNT 169 (959)
Q Consensus 162 ~~L~l~~~ 169 (959)
++||+|..
T Consensus 223 ~vLDIS~~ 230 (699)
T KOG3665|consen 223 RVLDISRD 230 (699)
T ss_pred Ceeecccc
Confidence 55555443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00011 Score=71.14 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=61.8
Q ss_pred ccccCCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCc----ccc-------hhhhccccccEEeccC
Q 002156 81 ILPKLFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIR----ALP-------ESVNKLYNLHTLLLED 144 (959)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~----~lp-------~~i~~L~~L~~L~L~~ 144 (959)
....+..+..+..+|||||.|.. +-..+.+-.+|++-+++.-... ++| ..+-++++|+..+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 34444568888999999998853 3445667788888888864221 333 3445677888888887
Q ss_pred cchhhhhhHh----hhcccccceeecCCCCcccccc
Q 002156 145 CRELKKLCAD----MGNLIKLHHHNNSNTDSLEEMP 176 (959)
Q Consensus 145 ~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~p 176 (959)
|..-...|+. |.+-+.|.||.+++|. ++.+.
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 6544444433 4555778888887777 55443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00032 Score=81.54 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=82.6
Q ss_pred CcccEEeccCCCCc--ccchhhh-ccccccEEeccCcchhh--hhhHhhhcccccceeecCCCCcccccccccccccCCc
Q 002156 112 RYLRYLNLSGTHIR--ALPESVN-KLYNLHTLLLEDCRELK--KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQ 186 (959)
Q Consensus 112 ~~L~~L~L~~n~i~--~lp~~i~-~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 186 (959)
.+||+|+++|...- .-|..++ -|+.|+.|.+++ ..+. +.-.-..++++|+.||+++++ ++.+ .+|++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 67888888886432 2255563 688899998887 3332 223335678889999999888 7777 7788888888
Q ss_pred eeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhcc
Q 002156 187 TLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLD 266 (959)
Q Consensus 187 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 266 (959)
.|............+.+ +.++++|+.||++.......+ ..-...++
T Consensus 199 ~L~mrnLe~e~~~~l~~-----------------------------LF~L~~L~vLDIS~~~~~~~~-----~ii~qYle 244 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLID-----------------------------LFNLKKLRVLDISRDKNNDDT-----KIIEQYLE 244 (699)
T ss_pred HHhccCCCCCchhhHHH-----------------------------HhcccCCCeeeccccccccch-----HHHHHHHH
Confidence 88544333332222222 445666666777654432211 11222334
Q ss_pred CCCCCCCcceEEEeccCC
Q 002156 267 MLKPHTNLEQFCIKGYEG 284 (959)
Q Consensus 267 ~l~~~~~L~~L~l~~~~~ 284 (959)
.-..+|+|+.|+.+|...
T Consensus 245 c~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCccccEEecCCcch
Confidence 444567777777776543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00013 Score=84.18 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=11.7
Q ss_pred ccCCCccEEEEccCCCccc
Q 002156 496 QDISSLKRLTIASCPKLQS 514 (959)
Q Consensus 496 ~~l~~L~~L~l~~c~~l~~ 514 (959)
...+.|+.+.+.+|..+..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~ 203 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD 203 (482)
T ss_pred hhCchhhHhhhcccccCCh
Confidence 3456666666666666554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0023 Score=59.79 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=17.5
Q ss_pred cCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 791 LHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 791 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
|..+++|.+|.+.+|.++.+-|.-...+++|..|.+.+|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 334444555555555444333322233444445554444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00098 Score=65.09 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCC--CCc-ccchhhhccccccEEeccCcchhhhhh--Hhhhcccc
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT--HIR-ALPESVNKLYNLHTLLLEDCRELKKLC--ADMGNLIK 160 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~ 160 (959)
..+..|..|++.+..++.+ ..+..|++|++|.++.| ++. .++.-...+++|++|++++| .++.+- ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 4445555555555555554 34555666666666666 333 33333344466666666663 333211 12445555
Q ss_pred cceeecCCCCccccccc----ccccccCCceeceE
Q 002156 161 LHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNF 191 (959)
Q Consensus 161 L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~ 191 (959)
|..|++..|. ...+-. -+.-+++|..|+..
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccc
Confidence 6666666665 333221 13445555555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.00027 Score=68.82 Aligned_cols=59 Identities=29% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccc--hhhhccccccEEeccCc
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP--ESVNKLYNLHTLLLEDC 145 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~ 145 (959)
.+|+.|.+|.||-|.|+.+ ..+..+++|+.|+|..|.|..+- .-+.+|++|++|-|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 4556666666666665555 33555566666666666555442 12234444455444443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0014 Score=37.70 Aligned_cols=18 Identities=44% Similarity=0.916 Sum_probs=8.5
Q ss_pred ccEEeccCCCCcccchhh
Q 002156 114 LRYLNLSGTHIRALPESV 131 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i 131 (959)
||+|||++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0041 Score=60.64 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHhhcCCCCccEEeecccCCCcccCc----cccCCCCcceeeccccccccccCC--------------CCCCCCCccE
Q 002156 714 SIAERLDNNTSLEIISIGSCGNLKILPS----GLHNLCQLQEIEIWNCGNLVSFPE--------------GGLPCAKLMR 775 (959)
Q Consensus 714 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~l~~~~~--------------~~~~~~~L~~ 775 (959)
.+-+++..|+.|+..++|+|-+....|. .+.+-+.|++|.+++|. ++-+.. -..+-|.|++
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 3445677889999999988877554443 34567889999998873 332211 1234678999
Q ss_pred EEecCCcCcCccc----cccCCCCccceeeeccCCCCCC-----CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 776 LEIYGCERLEALP----KGLHNLTSLQELRIGRGVELPS-----LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 776 L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
.....|++-.-.. ..+..-..|+.+.+.+|.+... +...+..+.+|+.||+.+|-.........+..+..|
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 9999888642221 1222225789999999877633 112345688999999999976655544444567788
Q ss_pred CCccEEEEcccC
Q 002156 847 SSLRRLEIRGCD 858 (959)
Q Consensus 847 ~~L~~L~l~~~~ 858 (959)
+.|+.|.+.+|-
T Consensus 242 ~~lrEL~lnDCl 253 (388)
T COG5238 242 NLLRELRLNDCL 253 (388)
T ss_pred chhhhccccchh
Confidence 899999999873
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.00039 Score=67.78 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHh--hhcccccce
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCAD--MGNLIKLHH 163 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~ 163 (959)
..+.+.+.|++-||.+++| +...+|+.|++|.|+-|+|+.+ +.+..+++|+.|.|.. +.+..+-+- +.+|++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence 3566778888999999888 5677999999999999999999 6789999999999998 467666433 688899999
Q ss_pred eecCCCCcccccccc-----cccccCCceeceEEe
Q 002156 164 HNNSNTDSLEEMPLG-----IGKLTCLQTLCNFVV 193 (959)
Q Consensus 164 L~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 193 (959)
|-|..|.--+.-+.. +.-|++|+.|+...+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 999877644444422 677899999976443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0031 Score=61.67 Aligned_cols=96 Identities=27% Similarity=0.291 Sum_probs=68.1
Q ss_pred cccCCCCCceeEEEecCC--CCc-cccccccccCcccEEeccCCCCccc--chhhhccccccEEeccCcchhhh-hhH--
Q 002156 82 LPKLFKLQRLRAFSLRGY--HIF-ELPDSIGDLRYLRYLNLSGTHIRAL--PESVNKLYNLHTLLLEDCRELKK-LCA-- 153 (959)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~--~i~-~lp~~~~~l~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~~~~~~-lp~-- 153 (959)
...|..|++|+.|+++.| ++. .++-...++++|++|+|++|+|+.+ -.....+.+|..||+.+|..... -+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 345678889999999999 443 3444455669999999999988754 13457888899999998754331 122
Q ss_pred hhhcccccceeecCCCCcccccccc
Q 002156 154 DMGNLIKLHHHNNSNTDSLEEMPLG 178 (959)
Q Consensus 154 ~i~~L~~L~~L~l~~~~~~~~~p~~ 178 (959)
.|.-+++|.+||-.... -.+.|..
T Consensus 138 vf~ll~~L~~LD~~dv~-~~Ea~~~ 161 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD-GEEAPEA 161 (260)
T ss_pred HHHHhhhhccccccccC-Ccccccc
Confidence 26778899999987776 5555543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0039 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.7
Q ss_pred ceeEEEecCCCCcccccccccc
Q 002156 90 RLRAFSLRGYHIFELPDSIGDL 111 (959)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~l 111 (959)
+|++||+++|.++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999998888764
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.001 Score=63.13 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
+..++..++||++.|++..+-..|+.++.|..|+++.|+|..+|.+++.+..++.+++.. +.....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 456777888888888877776678888888888888888888888888888888888876 5677788888888888888
Q ss_pred ecCCCC
Q 002156 165 NNSNTD 170 (959)
Q Consensus 165 ~l~~~~ 170 (959)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 877765
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.066 Score=48.46 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=41.0
Q ss_pred hcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
|.++++|+.+.+.. .....-...+..+++|+.+++..+ +..++. .+..+++++.+.+.+ .........|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 55555666666543 222222344555666666666543 333332 344555666666654 2222223344556666
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccC
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWG 828 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 828 (959)
+.+++..+ +...-...+..+ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666543 221222234444 555555543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.018 Score=30.66 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=6.0
Q ss_pred cccEEeccCCCCcccc
Q 002156 113 YLRYLNLSGTHIRALP 128 (959)
Q Consensus 113 ~L~~L~L~~n~i~~lp 128 (959)
+||.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.11 Score=47.07 Aligned_cols=99 Identities=24% Similarity=0.173 Sum_probs=47.9
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
..|.++++|+.+++.++ ....-...+..+++|+.+.+.. ....++. .+..+++|+.+++..+ +...-...+.+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~- 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence 35777878888888663 3333345577777888888865 3333443 4556888888888764 333334566776
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNL 821 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L 821 (959)
.|+.+.+.. .....-...+..+++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 888888775 2332333344455444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.0048 Score=58.78 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=77.3
Q ss_pred cccc-ccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccc
Q 002156 102 FELP-DSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIG 180 (959)
Q Consensus 102 ~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 180 (959)
+.+| ..+.....-++||++.|++..+-..+..++.|..||++. +.+..+|.+++.+..++++++..|. .+..|..++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 4454 356777889999999999998888899999999999998 6899999999999999999999888 999999999
Q ss_pred cccCCceece
Q 002156 181 KLTCLQTLCN 190 (959)
Q Consensus 181 ~L~~L~~L~~ 190 (959)
++++++.++.
T Consensus 109 k~~~~k~~e~ 118 (326)
T KOG0473|consen 109 KEPHPKKNEQ 118 (326)
T ss_pred ccCCcchhhh
Confidence 9999998854
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.014 Score=54.71 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=48.1
Q ss_pred cceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcc-----cccCCCCCceEeeccCCCCccccc-ccCCCCCC
Q 002156 821 LQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV-----SFPLPASLTSLEISFFPNLERLSS-SIVDLQIL 894 (959)
Q Consensus 821 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L 894 (959)
++.+|-++........ ..+..+++++.|.+.+|..... .+...++|+.|++++|+.|++-.- .+..+++|
T Consensus 103 IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHHHHH----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4444444444333333 2344455555555555433221 122667888888888888887433 67888888
Q ss_pred cEEecCCCcCCC
Q 002156 895 TELRLYHCRKLK 906 (959)
Q Consensus 895 ~~L~l~~c~~l~ 906 (959)
+.|.+.+-+.+.
T Consensus 179 r~L~l~~l~~v~ 190 (221)
T KOG3864|consen 179 RRLHLYDLPYVA 190 (221)
T ss_pred HHHHhcCchhhh
Confidence 888888754443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.047 Score=29.01 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=11.4
Q ss_pred CceeEEEecCCCCcccc
Q 002156 89 QRLRAFSLRGYHIFELP 105 (959)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp 105 (959)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.13 Score=31.08 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=14.8
Q ss_pred cCcccEEeccCCCCcccchhh
Q 002156 111 LRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~~i 131 (959)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.13 Score=31.08 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=14.8
Q ss_pred cCcccEEeccCCCCcccchhh
Q 002156 111 LRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~~i 131 (959)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.03 Score=52.69 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=51.1
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCc
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSL 849 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 849 (959)
.++.++-+++.+...--..+.++++++.|.+.+|.-... +...-+..++|+.|++++|+.+++... ..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhhh
Confidence 566666666665544445556677777777777654422 111112457888888888887776554 345667777
Q ss_pred cEEEEcc
Q 002156 850 RRLEIRG 856 (959)
Q Consensus 850 ~~L~l~~ 856 (959)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777765
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.63 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCceeEEEecCCCCcccccc
Q 002156 88 LQRLRAFSLRGYHIFELPDS 107 (959)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~ 107 (959)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999999764
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.63 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCceeEEEecCCCCcccccc
Q 002156 88 LQRLRAFSLRGYHIFELPDS 107 (959)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~ 107 (959)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999999764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 8e-22
Identities = 57/314 (18%), Positives = 97/314 (30%), Gaps = 52/314 (16%)
Query: 534 LEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALK 593
E L G L + S S +I ALK
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69
Query: 594 SLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP------RSLKQLDILSCDNIRTLTVE 647
+ + T L + S L Q P L+ + + + L
Sbjct: 70 ATADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRLSHLQHMT-IDAAGLMELPDT 122
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
Q + LE L + L LPA++ SL L+ L +
Sbjct: 123 MQ-QFAG----------LETLTLARN-PLR------ALPASIASLN------RLRELSIR 158
Query: 708 ECSKLESI---------AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCG 758
C +L + + +L+ + + ++ LP+ + NL L+ ++I N
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS- 216
Query: 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP 818
L + KL L++ GC L P L+ L + L +L +
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 819 TNLQSLDIWGNIEI 832
T L+ LD+ G + +
Sbjct: 277 TQLEKLDLRGCVNL 290
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 9e-19
Identities = 65/338 (19%), Positives = 107/338 (31%), Gaps = 51/338 (15%)
Query: 605 SSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSL 664
S E L +L L Q + +R +++
Sbjct: 12 SGRENLYFQGSTALR-----PYHDVLSQWQRHYNADR---------------NRWHSAWR 51
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTS 724
+ + + T L AT + LE P +L + L ++ +
Sbjct: 52 QANSNNPQIETRTG----RALKATADLLEDATQP-GRVALELRSV-PLPQFPDQAFRLSH 105
Query: 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERL 784
L+ ++I + L LP + L+ + + L + P +L L I C L
Sbjct: 106 LQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL 163
Query: 785 EALPKGL---------HNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835
LP+ L L +LQ LR+ + SL NL+SL I +
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-----P 217
Query: 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSFP-----LPASLTSLEISFFPNLERLSSSIVD 890
+ G H L L++RGC + ++P L L + NL L I
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTA-LRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHR 275
Query: 891 LQILTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPL 927
L L +L L C L P + + +
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 62/349 (17%), Positives = 113/349 (32%), Gaps = 78/349 (22%)
Query: 465 PLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQ 524
P L + + D W+ N S+ ++ + L++ E Q
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQAN------SNNPQIETRTGRALKATADLLEDATQ 80
Query: 525 QQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKK 583
L L L + P + LS L+ + I + L+ P + + L+
Sbjct: 81 PGR-------VALELRSVP-LPQFPDQAFRLSHLQHMTID-AAGLMELPDTMQQFAGLET 131
Query: 584 INIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTY----FGGVQLP------RSLKQL 633
+ + L++LP + + + L L+I +C LT +L+ L
Sbjct: 132 LTLARNP-LRALPAS-IASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 634 DILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLE 693
L IR+L + L+ L I + L+ L + L
Sbjct: 189 R-LEWTGIRSLPASIA-NLQN----------LKSLKIRNS-PLS------ALGPAIHHLP 229
Query: 694 VGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIE 753
L+ L + C+ L + L+ + + C NL LP +H L QL++
Sbjct: 230 ------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK-- 281
Query: 754 IWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802
L++ GC L LP + L + + +
Sbjct: 282 ----------------------LDLRGCVNLSRLPSLIAQLPANCIILV 308
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHT 139
+ L L++ L I LP SI +L+ L+ L + + + AL +++ L L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233
Query: 140 LLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
L L C L+ G L + +L +PL I +LT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 82 LPK-LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSG-THIRALPESVNKLYNLHT 139
LP + LQ L++ +R + L +I L L L+L G T +R P L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 140 LLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
L+L+DC L L D+ L +L + +L +P I +L +
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 82 LPK-LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTL 140
P F+L L+ ++ + ELPD++ L L L+ +RALP S+ L L L
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 141 LLEDCRELKKLCADMG------------NLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
+ C EL +L + NL L + +P I L L++L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT----GIRSLPASIANLQNLKSL 211
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 38/238 (15%)
Query: 712 LESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771
+ S +++ E + L+ L + + + P
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-- 58
Query: 772 KLMRLEIYGCERLEALPKGLHNLTS--LQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829
++E L+A L + T L + R V LP ++ ++LQ + I
Sbjct: 59 ---QIETRTGRALKATADLLEDATQPGRVALEL-RSVPLPQFPDQAFRLSHLQHMTIDAA 114
Query: 830 --IEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPAS------LTSLEISFFPNL 881
+E+ + F+ L L + + + LPAS L L I P L
Sbjct: 115 GLMELPDT-------MQQFAGLETLTLARN--PLRA--LPASIASLNRLRELSIRACPEL 163
Query: 882 ERLSSSIVDLQI---------LTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPLIE 929
L + L LRL ++ P +L L I PL
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA 220
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFE-LPDSIGDLRYLRYLNLSG-THIRALPESVNKLYNL 137
++ P + L +L LRG P G L+ L L +++ LP +++L L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 138 HTLLLEDCRELKKLCADMGNLIKLHH---HNNSNTDSLEEMP 176
L L C L +L + + L + + P
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 63/350 (18%), Positives = 109/350 (31%), Gaps = 84/350 (24%)
Query: 103 ELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL-----CADMGN 157
D + + + + H + N + R LK A
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNP----QIETRTGRALKATADLLEDATQPG 82
Query: 158 LIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL----CNFVVGKDSGSGLSELKLLMHLRGA 213
+ L + L + P +L+ LQ + + D+ + L+ L L
Sbjct: 83 RVALELRSV----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETL-TLAR- 136
Query: 214 LEISKLENV-KDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPH- 271
+ L + + + L+EL +R E + D H
Sbjct: 137 ---NPLRALPASIASL--------NRLRELSIRAC-----PELTELPEPLASTDASGEHQ 180
Query: 272 --TNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRG 329
NL+ ++ P + + NL +LK +N + P++ LP L+ L +RG
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 330 MSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILR 389
+ ++ PPI F L+ L +
Sbjct: 239 CTALRNY--------PPI---------FGGRA-------------------PLKRLILKD 262
Query: 390 CSKLKGTFPE---HLPALEMLVIEGCEELSV---SVSRLPALCKLQIGGC 433
CS L T P L LE L + GC LS +++LPA C + +
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 49/319 (15%), Positives = 82/319 (25%), Gaps = 65/319 (20%)
Query: 126 ALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCL 185
+ + L + L+ + + ++ + + S
Sbjct: 3 SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58
Query: 186 QTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245
Q +G L LE+ L LR
Sbjct: 59 QIETR------TGRALKAT-----------ADLLEDATQ------------PGRVALELR 89
Query: 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFK 305
+ + L ++L+ I M+ P + F+ L TL
Sbjct: 90 ------SVPLPQFPDQAFRL------SHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLA 135
Query: 306 NCGMCTALP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWE 364
+ ALP S+ L L+ L++R + L D L L
Sbjct: 136 RNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL-------QS 187
Query: 365 DWISHGSSQGVVEGFPKLRELHIL--RCSKLKGTFPE---HLPALEMLVIEGC---EELS 416
+ + + L+ L L R S L HLP LE L + GC
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 417 VSVSRLPALCKLQIGGCKK 435
L +L + C
Sbjct: 247 PIFGGRAPLKRLILKDCSN 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 79/527 (14%), Positives = 161/527 (30%), Gaps = 127/527 (24%)
Query: 162 HHHNNSNTDSLEEMPLGIGKLTCLQTLC-NFVVGKDSGSGLSELKLLMHLRGALEISKLE 220
HHH++ + + E + L FV + + + L +++
Sbjct: 2 HHHHHMDFE-TGEHQYQYKDI--LSVFEDAFV--DN----FDCKDVQDMPKSILSKEEID 52
Query: 221 NVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPH-----TNLE 275
++ +A L L WT + + V ++L+ + + ++
Sbjct: 53 HIIMSKDAVS---------GTLRLFWTLLSKQEEM----VQKFVEEVLRINYKFLMSPIK 99
Query: 276 QFCI------KGYEGMKFPTWLGDSSFSNL-VT-----LKFKNCGMCTALPSMGQLPSLK 323
+ Y + + + F+ V+ LK + + +L K
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--------LLELRPAK 151
Query: 324 HLTVRGMSRVKRLGSEFYGNDPPIPFPCL--ETLLFENMREWED----WISHGSSQGVVE 377
++ + G+ LGS G + + L ++ D W++ +
Sbjct: 152 NVLIDGV-----LGS---GKT------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 378 GFPKLRELHILRCSKLKGTF---PEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCK 434
L++L ++ + +H +++ + + RL L C
Sbjct: 198 VLEMLQKL----LYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRL--LKSKPYENCL 247
Query: 435 KV---VWESATGH---LGSQNSVVCRDASNQVFLVG------PLKPQLPKLEELEIIDMK 482
V V + + L + + R FL L L E+ +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 483 EQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGC 542
+ + L L R + + P+ S++AE +D + C
Sbjct: 308 LK---Y-----LDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LATWDNWKHVNC 352
Query: 543 QGLVKLPQSSL-SLSS--LREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPEA 598
L + +SSL L R+ ++ L FP +P+ L + IW D +KS
Sbjct: 353 DKLTTIIESSLNVLEPAEYRK--MFD--RLSVFPPSAHIPTILLSL-IW-FDVIKSDVMV 406
Query: 599 WMCD-TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTL 644
+ SL + S + L LK +N L
Sbjct: 407 VVNKLHKYSL--VEKQPKESTISIPSIYL--ELKV----KLENEYAL 445
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 1e-11
Identities = 88/583 (15%), Positives = 173/583 (29%), Gaps = 161/583 (27%)
Query: 445 LGSQNSVVCRDASNQVFLVGPLKPQLPKL-----EELEIIDMKEQTYIWKSHNGLLQDIS 499
L Q +V Q F+ L+ L E M + YI + + L D
Sbjct: 72 LSKQEEMV------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQ 124
Query: 500 SLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLR 559
+ ++ L +Q L EL + + + G G K + ++L
Sbjct: 125 VFAKYNVSRLQPYLKL--------RQALLELR-PAKNVLIDGVLGSGK---TWVALDVCL 172
Query: 560 EIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPE-------------AWMCDTNSS 606
+ + + K+ +N+ +C++ +++ E D +S+
Sbjct: 173 SYKV----------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 607 LEILTISSCHSL-TYFGGVQLPRSLKQLDILSCDNIRTLTVEE--GIQC-------SSSS 656
+++ S L L +L N++ + C
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL---LVL--LNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 657 SRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES---LEVGNLPPSLKSLGVFECSKLE 713
+ +++ H+ ++ + +E+ + L +LP + + S
Sbjct: 278 TDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--- 331
Query: 714 SIAERLDNNTS------------LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNC-GNL 760
IAE + + + L I I S L L+ E L
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTI-IESS------------LNVLEPAEYRKMFDRL 378
Query: 761 VSFPEG-GLPCAKLMRL---EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSL----- 811
FP +P L + I + LH + +++ + +PS+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 812 EEEDGLPT----------NLQSLDIWGNIEIWKSM------------IERGRGFHGFS-- 847
+ + ++ D I + IE F
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 848 --SLRRLE--IRGCDDDMVSFPLPASLTSL--EISFF--------PNLERLSSSIVDLQI 893
R LE IR D ++ S+ + ++ F+ P ERL ++I+D
Sbjct: 497 FLDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 894 LTELRLYHCRKLKYFPKKGLPSSLLR--LWIEGCPLIEEKCRK 934
E L + + LLR L E + EE ++
Sbjct: 554 KIEENLICSKY----------TDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-08
Identities = 43/314 (13%), Positives = 87/314 (27%), Gaps = 101/314 (32%)
Query: 702 KSLGVFECSKLESIAERLDNNTSLEI--ISIGSCGNLKILPSGLHNLCQLQEIEIWNCGN 759
K+ + + ++D I +++ +C + + + L L
Sbjct: 163 KTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEMLQKLL------------ 206
Query: 760 LVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPT 819
+++ R + + S+Q EL L +
Sbjct: 207 --------------YQIDPNWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYEN 245
Query: 820 NLQSLD-IWGNIEIWK-----------------------------SMIERGRGFHGFSSL 849
L L + N + W S+
Sbjct: 246 CLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 850 RRL-EIRGCDDDMVS------FPLPASLTSLEISFFP---------NLERLSSSI-VDLQ 892
L + C + P S+ + I N ++L++ I L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 893 ILT--ELR-LYHCRKLKYFPKK-GLPSSLL-RLWIEG----CPLIEEKCRKDG---GQYW 940
+L E R ++ +L FP +P+ LL +W + ++ K K Q
Sbjct: 365 VLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 941 DLLTHIPRVQIDLK 954
+ IP + ++LK
Sbjct: 423 ESTISIPSIYLELK 436
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 77/564 (13%), Positives = 156/564 (27%), Gaps = 95/564 (16%)
Query: 294 SSFSNLVTLKFKNCGMCTALP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCL 352
+ + L G +P ++GQL LK L+ G F +
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGT-HSETVSGRLFGDEELTPDMSEE 378
Query: 353 ETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC 412
+ L + I R ++K + +L+ I
Sbjct: 379 RKHRIRM-----HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433
Query: 413 ----EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKP 468
+S ++ RL L + +++ NS + +
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANS-------DYAKQYENEEL 485
Query: 469 QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSL---------VAEE 519
L++L +++ + + + + P+LQSL A+
Sbjct: 486 SWSNLKDLTDVEL--------YNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQL 533
Query: 520 EKDQQQQLCELSC--RLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSS--LVSFPEV 575
+ D + + +++ + L + P +S SL + ++ + C +
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNN-LEEFP-ASASLQKMVKLGLLDCVHNKVRHLEAF 591
Query: 576 ALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635
KL + + + ++ +PE C +E L S L Y + +S+ +
Sbjct: 592 GTNVKLTDLKLDYN-QIEEIPE-DFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGS 648
Query: 636 LSCDN--IRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLE 693
+ I + + + S NE+
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGIN-----ASTVTL----------SYNEIQ------- 686
Query: 694 VGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIE 753
P L + S + +I L NN + I S N L I+
Sbjct: 687 --KFPTELFA----TGSPISTI--ILSNN-LMTSIPENSLKPK---DGNYKNTYLLTTID 734
Query: 754 IWNCGNLVSFPEGGLPCA--KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSL 811
+ L S + L +++ + P N + L+ I +
Sbjct: 735 LRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792
Query: 812 EEEDGLP------TNLQSLDIWGN 829
P +L L I N
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSN 816
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 59/372 (15%), Positives = 121/372 (32%), Gaps = 48/372 (12%)
Query: 565 KCSSLVSFPEVALP--SKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFG 622
+ P V L ++ +++ A +P+A + + L++L+ + HS T
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQL-TELKVLSFGT-HSET--- 360
Query: 623 GVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682
++L + + + +R S L I + I
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 683 NELPATLESLEVGNLPPSLKSL--GVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP 740
+ + +L+ ++GNL + + + +KL+ I N+ + +
Sbjct: 421 SRI--SLKDTQIGNLTNRITFISKAIQRLTKLQII--YFANS---PFTYDNIAVDWEDAN 473
Query: 741 SGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQEL 800
S + +E+ N +L +E+Y C + LP L++L LQ L
Sbjct: 474 SDYAKQYENEELSWSNLKDLTD-------------VELYNCPNMTQLPDFLYDLPELQSL 520
Query: 801 RIGR---------GVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851
I + L +++ +Q + N + L
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NL--EEFPASASLQKMVKLGL 577
Query: 852 LEIRGCD-DDMVSFPLPASLTSLEISFFPN-LERLSSSI-VDLQILTELRLYHCRKLKYF 908
L+ + +F LT L++ + N +E + + L H KLKY
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDY--NQIEEIPEDFCAFTDQVEGLGFSHN-KLKYI 634
Query: 909 PKKGLPSSLLRL 920
P S+ +
Sbjct: 635 PNIFNAKSVYVM 646
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 69 LSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRAL 127
L ++ + + K ++ + I + +I L L+ + + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463
Query: 128 PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQT 187
+V + + ++ + NL L N ++ ++P + L LQ+
Sbjct: 464 NIAV----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 188 L 188
L
Sbjct: 520 L 520
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 58 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSIGDLRYLRY 116
+ + +NS + L+ L L +LPD + DL L+
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 117 LNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMP 176
LN++ + + L + + N +LEE P
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDT-----------GPKIQIFYMGYN----NLEEFP 564
Query: 177 --LGIGKLTCLQTL 188
+ K+ L L
Sbjct: 565 ASASLQKMVKLGLL 578
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 18/111 (16%), Positives = 26/111 (23%), Gaps = 20/111 (18%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSI--GDLRYLRYLNLSGTHIRALPESVNKLYNL 137
L LR + L D L YL +++S + P L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778
Query: 138 HTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
+ H + L + P GI L L
Sbjct: 779 KAFGI------------------RHQRDAEGNRILRQWPTGITTCPSLIQL 811
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 50/358 (13%), Positives = 99/358 (27%), Gaps = 35/358 (9%)
Query: 562 VIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYF 621
V YK S K I + CD+ LP + +++ ++
Sbjct: 178 VTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAG-------TYQVVAYTTYSQSGIK 230
Query: 622 GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFS 681
+S++ DN T IQ ++ I+ +L I+
Sbjct: 231 RSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEY-----------IKDYKALKAIWE 279
Query: 682 KNELPATLESLEVGNLPPSLKS--LGVFECSKLESIAERLDNNTSLEIISIGSCGNLKIL 739
+ N + + LDNN + +S+ G +
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339
Query: 740 PSGLHNLCQLQEIEI-WNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQ 798
P + L +L+ + + + G M E R+ L L
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 799 ELR-----IGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIER-GRGFHGFSSLRRL 852
I R E+ ++++ + + N I + + L+ +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN------RITFISKAIQRLTKLQII 453
Query: 853 EIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK 910
+ + E S +L+ LT++ LY+C + P
Sbjct: 454 YFANS--PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTHIRALPESVN------ 132
S +K +L I + P + + + LS + ++PE+
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 133 --KLYNLHTLLLEDCRELKKLCADMG-----NLIKLHHHNNSNTDSLEEMPLGIGKLTCL 185
Y L T+ L + L L D L + N P + L
Sbjct: 724 YKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN----CFSSFPTQPLNSSQL 778
Query: 186 QTL 188
+
Sbjct: 779 KAF 781
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 70/592 (11%), Positives = 143/592 (24%), Gaps = 142/592 (23%)
Query: 88 LQRLRAFSLRGYHI-FELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCR 146
R+ SL G+ +PD+IG L L+ L+
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE------------ 369
Query: 147 ELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKL 206
L + + + + L + + +K
Sbjct: 370 ----------ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 207 LMHLR-GALEISKLENV-----KDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAET 260
+ +I L N K + L+ + + T +
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRL--------TKLQIIYFANSPFTYDNI------ 465
Query: 261 EMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALP-SMGQL 319
+ D + + + +L ++ NC T LP + L
Sbjct: 466 AVDWEDANSDYAKQYE---------NEELSWS--NLKDLTDVELYNCPNMTQLPDFLYDL 514
Query: 320 PSLKHLTVRG---------MSRVKRLGSEFYGNDPPIPFPCLETL-LFENMREWEDWISH 369
P L+ L + + RL + P ++ + N +
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDT------GPKIQIFYMGYNN------LEE 562
Query: 370 GSSQGVVEGFPKLRELH-----------ILRCSKLK---------GTFPE----HLPALE 405
+ ++ KL L KL PE +E
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622
Query: 406 MLVIEGC--EEL--SVSVSRLPALCKLQIGGCK-KVVWESATGHLGSQNSVVCRD---AS 457
L + + + + + + K + + + + +
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 458 NQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQ---DISSLKRLTIASCPKLQS 514
N+ + + I + S+N + + K + L +
Sbjct: 683 NE--IQKFPTELFATGSPISTIIL--------SNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 515 LVAE----EEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLV 570
+ + L L + +S P L+ S L+ I
Sbjct: 733 IDLRFNKLTSLSDDFRATTLP-YLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAE 790
Query: 571 S------FPEV--ALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISS 614
+P PS L ++ I D ++ + E L IL I+
Sbjct: 791 GNRILRQWPTGITTCPS-LIQLQIGSND-IRKVDEKLT----PQLYILDIAD 836
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-11
Identities = 74/509 (14%), Positives = 146/509 (28%), Gaps = 81/509 (15%)
Query: 494 LLQDISSLKRLTIASCPKL--QSLVAEEEKDQQQQLCELSCR----LEYLTLSGCQ---- 543
+++ ++ + + P +LV + E LE + L
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120
Query: 544 GLVKLPQSSLSLSSLREIVIYKCSSL--VSFPEVALP-SKLKKINIWHCDALKSLPEAW- 599
L + + S + + +V+ C +A LK++++ D
Sbjct: 121 CLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177
Query: 600 -MCDTNSSLEILTISSCHSLTYFGGVQL----PRSLKQLDILSCDNIRTLTVEEGIQCSS 654
DT +SL L IS S F ++ +LK L + + L +
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQ 236
Query: 655 SSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLES 714
LE L + + L L L+ L F +
Sbjct: 237 ----------LEELGTGGYTAEVRPDVYSGLSVALSGC------KELRCLSGFWDAVPAY 280
Query: 715 IAERLDNNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKL 773
+ + L +++ L L +LQ + + + C L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340
Query: 774 MRLEIYGCER-------------LEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTN 820
L ++ E L ++ G L S+ L R + +L N
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV--LYFCRQMTNAALITIARNRPN 398
Query: 821 LQSLDIWGNIEIWKSMIERGRGFHGF-------SSLRRLEIRGCDDDMVSFPLPA---SL 870
+ + + GF LRRL + G D V + +
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458
Query: 871 TSLEISFFPN----LERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPS--SLLRLWIEG 924
L ++F + + + S L +L + C ++ LW+
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
Query: 925 CPLIEEKCRKDGGQYWDLLTHIPRVQIDL 953
C + C+ L +P++ +++
Sbjct: 516 CSVSFGACKL-------LGQKMPKLNVEV 537
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 79/501 (15%), Positives = 149/501 (29%), Gaps = 94/501 (18%)
Query: 295 SFSNLVTLKFKNCGMCT--ALPSMGQ-LPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPC 351
SF N L +C + L ++ +LK L +R S V + + + P +
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE-SDVDDVSGHWLSHFPDT-YTS 185
Query: 352 LETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKG--TFPEHLPALEMLVI 409
L +L N+ +S + + +V P L+ L + R L+ T + P LE L
Sbjct: 186 LVSL---NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 410 EGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQ 469
G L GCK++ S DA +
Sbjct: 243 GGYTAEVRPDVYSGLSVALS--GCKELRCLS-----------GFWDAVPAYLPA--VYSV 287
Query: 470 LPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 529
+L L + Q+ LL L+RL + + L L
Sbjct: 288 CSRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWVLDYIEDAGLEV---------LAS 335
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHC 589
L L + + V P +L+ L + + C L S ++ C
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLES-------------VLYFC 381
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEG 649
+ TN++L + + ++T F L ++ + D + ++ G
Sbjct: 382 RQM----------TNAALITIA-RNRPNMTRF-------RLCIIEPKAPDYLTLEPLDIG 423
Query: 650 IQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP----------- 698
+ L L + L+ +E L V
Sbjct: 424 FGAIVEHCKD-----LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478
Query: 699 --PSLKSLGVFECSKL-ESIAERLDNNTSLEIISIGSCGNLKILPSGLHNL---CQLQEI 752
SL+ L + +C +++ ++ + + SC + L +
Sbjct: 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC---SVSFGACKLLGQKMPKLNV 535
Query: 753 EIWNCGNLVSFPEGGLPCAKL 773
E+ + P ++
Sbjct: 536 EVIDERGAPDSRPESCPVERV 556
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 80/525 (15%), Positives = 146/525 (27%), Gaps = 93/525 (17%)
Query: 366 WISHGSSQGVVEGFPKLRELHILRCSKLK-----------------GTFPEHLPALEMLV 408
S V+ FPK+R + + LE +
Sbjct: 52 NCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR 111
Query: 409 IEGC----EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVG 464
++ + L + L + C+ S G +
Sbjct: 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF---STDG-------------------LA 149
Query: 465 PLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQ 524
+ L+EL++ + + +SL L I+ S A E
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE----- 204
Query: 525 QQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKI 584
+L L+ L L+ L KL L E+ ++ V + S
Sbjct: 205 -RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS- 262
Query: 585 NIWHCDALKSLPEAW---------MCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635
C L+ L W + S L L +S +Y V+L +L
Sbjct: 263 ---GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY-DLVKLLCQCPKLQR 318
Query: 636 LS-CDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEV 694
L D I + G++ +S+ + L L + + L S+
Sbjct: 319 LWVLDYIE----DAGLEVLASTCKD-----LRELRVFPSEPFVMEPNVALTEQGLVSV-- 367
Query: 695 GNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIG-SCGNLKILPSGLHNLCQLQEIE 753
C KLES+ T+ +I+I + N+ L +
Sbjct: 368 -----------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF--RLCIIEPKAPDY 414
Query: 754 IWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR-GVELPSLE 812
+ + F C L RL + G + ++ L + G +
Sbjct: 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474
Query: 813 EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857
+L+ L+I K+++ ++R L + C
Sbjct: 475 HVLSGCDSLRKLEIRDCPFGDKALLA---NASKLETMRSLWMSSC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 6e-09
Identities = 59/354 (16%), Positives = 109/354 (30%), Gaps = 34/354 (9%)
Query: 598 AWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSS 657
+W + I +C++++ ++ ++ +++ + +
Sbjct: 36 SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL------VPDGW 89
Query: 658 RRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLE-VGNLPPSLKSLGVFECSKL--ES 714
Y +E + S L I K + T + LE + + K L + C +
Sbjct: 90 GGYVYPWIEAMS-SSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147
Query: 715 IAERLDNNTSLEIISIGSCGNLKILPSGLHNLC----QLQEIEIWNCGNLVSFPEGGLP- 769
+A +L+ + + + L + L + I + VSF L
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--SALER 205
Query: 770 ----CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSL- 824
C L L++ LE L L L+EL G + GL L
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265
Query: 825 ---DIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC---DDDMVSF--PLPASLTSLEIS 876
+ G + + + + S L L + D+V P L L +
Sbjct: 266 ELRCLSGFWDAVPAYLP--AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVL 322
Query: 877 FFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIEE 930
+ L + L ELR++ P L L GCP +E
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 85/479 (17%), Positives = 156/479 (32%), Gaps = 74/479 (15%)
Query: 490 SHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCR-------LEYLTLSGC 542
S N I+ + + +C LQ L+ + ++ + LE+L LS
Sbjct: 34 SFN----KITYIGHGDLRACANLQVLIL-----KSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 543 QGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALPSK---LKKINIWHCDALKSLPEA 598
L L S LSSL+ + + + +L L+ + I + + +
Sbjct: 85 H-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 599 WMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILS-------------CDNIRTLT 645
+SL L I + Y +S++ + L+ D + ++
Sbjct: 143 -DFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 646 VEEGIQCSSSSSRRYTSSLLEHLHIESCLSL----------TCIFSKNELPATLESLEVG 695
E + + + + E L+ + L +E
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 696 NLPPSLKSLGVFECSKLESIAE-RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEI 754
+ +L LG F S+ + ++E ++ + I L + L +++ I +
Sbjct: 260 DC--TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 755 WNCGNLVSFPEG---GLPCAKLMRLEIYGC---ERLEALPKGLHNLTSLQELRIGRGVEL 808
N + P L L L++ E SLQ L + L
Sbjct: 318 ENS-KVFLVPCSFSQHLK--SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL-SQNHL 373
Query: 809 PSLEEEDGL---PTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP 865
S+++ + NL SLDI N + +R L + +V
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRN-----TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 866 LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEG 924
+P +L L++S N L S + L L EL + + LK P L LL + I
Sbjct: 429 IPQTLEVLDVSN--N--NLDSFSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISR 482
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 98/572 (17%), Positives = 184/572 (32%), Gaps = 122/572 (21%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTHIRALPESV-NKLYN 136
I + L+ L+ I + L L +L+LS H+ +L S L +
Sbjct: 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Query: 137 LHTLLLEDCR----ELKKLCADMGNLIKLH-HHNNSNTDSLEEMPLGIGKLTCLQTLCNF 191
L L L + L ++ NL L + + ++ G+ L L+
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
Query: 192 VVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTD 251
+ S S L ++ + HL L +S+ + ++ D +++ L LR
Sbjct: 160 LRNYQSQS-LKSIRDIHHLT--LHLSESAFLLEIF------ADILSSVRYLELR------ 204
Query: 252 GSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCT 311
TNL +F + + + +F V +
Sbjct: 205 -------------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 312 ALPSMGQLPSLK--HLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISH 369
L + +L ++ T+ G+ S+ + + L + D
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD---- 301
Query: 370 GSSQGVVEGFPKLRELHILRC--SKLKGTFPEHLPALEMLVIEGCE------ELSVSVSR 421
V K++ + + + +F +HL +LE L + + S
Sbjct: 302 --LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359
Query: 422 LPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDM 481
P+L L + SQN + + ++ L L L L+I
Sbjct: 360 WPSLQTLVL----------------SQNHLRSMQKTGEILL------TLKNLTSLDI--- 394
Query: 482 KEQTYIWKSHNGL------LQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 535
S N Q ++ L ++S ++ + + LE
Sbjct: 395 --------SRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-----------CIPQTLE 434
Query: 536 YLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSL 595
L +S L SL L L+E+ I + L + P+ +L L + I LKS+
Sbjct: 435 VLDVSNNN----LDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSV 488
Query: 596 PEAWMCDTNSSLEILTIS------SCHSLTYF 621
P+ D +SL+ + + SC + Y
Sbjct: 489 PDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYL 519
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 76/478 (15%), Positives = 146/478 (30%), Gaps = 91/478 (19%)
Query: 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEE---EKDQQQQLC 528
L LE +D+ S N L SSL L+ L + L
Sbjct: 72 SLGSLEHLDL--------SDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 529 ELSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALPS--KLKKIN 585
L+ L + + ++ + + L+SL E+ I SL ++ +L S + +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLT 178
Query: 586 IWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLT 645
+ + L E D SS+ L + +L F LP + + R
Sbjct: 179 LHLSE-SAFLLEI-FADILSSVRYLELRDT-NLARFQFSPLP-VDEVSSPMKKLAFRGSV 234
Query: 646 VEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLG 705
+ + RY L E + L+ F+ +E E +V + +++ L
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV--TIRRLH 292
Query: 706 VFECSKLESIAERLDNNTSLEIISIGSCGNLKILP----SGLHNL-------CQLQEIEI 754
+ + ++ ++ I++ + + ++P L +L + E +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 755 WNCG----------------NLVSFPEGGLPCAKLMRLE---IYGCERLEALPKGLHNLT 795
N +L S + G L L I +P
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPE 410
Query: 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855
++ L + + + + +P L+ LD+ N L+ L I
Sbjct: 411 KMRFLNL-SSTGIRVV--KTCIPQTLEVLDVSNN--------NLDSFSLFLPRLQELYIS 459
Query: 856 GCDDDMVSFPLPASLTSL-EISFFPNLERLS-----------SSIVDLQILTELRLYH 901
L +L + S FP L + L L ++ L+
Sbjct: 460 RN-----------KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 45/252 (17%), Positives = 85/252 (33%), Gaps = 37/252 (14%)
Query: 672 SCLSLTCIFSKNELPATLESLEVGN-----LPPS-------LKSLGVFECSKLESIAER- 718
S T I S L A ++SL++ + L+ L + ++ +I
Sbjct: 13 RSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDA 69
Query: 719 LDNNTSLEIISIGSCGNLKILPSG-LHNLCQLQEIEIWNCGNLVSFPEGGL--PCAKLMR 775
+ SLE + + +L L S L L+ + + + L L
Sbjct: 70 FYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQT 127
Query: 776 LEIYGCERLEALPKG-LHNLTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGN--I 830
L I E + + LTSL EL I + + L + + + + ++ L + +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIR-DIHHLTLHLSESA 185
Query: 831 EIWKSMIERGRGFHGFSSLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSS 887
+ + SS+R LE+R + P+ + ++ F S
Sbjct: 186 FLLEIF------ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Query: 888 IVDLQILTELRL 899
+L L L
Sbjct: 240 FNELLKLLRYIL 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 53/292 (18%), Positives = 89/292 (30%), Gaps = 40/292 (13%)
Query: 696 NLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSCGNLKILPSG-LHNLCQLQEIE 753
+LP + L F +KL I + LE I I L+++ + NL +L EI
Sbjct: 27 DLPRNAIELR-FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 754 IWNCGNLVSFPEG---GLPCAKLMRLEIYGCERLEALPKGLH-NLTSLQELRIGRGVELP 809
I NL+ LP L L I ++ LP + L I + +
Sbjct: 86 IEKANNLLYINPEAFQNLP--NLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH 142
Query: 810 SLEEE--DGLPTNLQSLDIWGNIEIWK----------------------SMIERGRGFHG 845
++E GL L + N I + + FHG
Sbjct: 143 TIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHG 200
Query: 846 FSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRL---YHC 902
S L+I + +L L NL++L ++ L L E L HC
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL-PTLEKLVALMEASLTYPSHC 259
Query: 903 RKLKYFPKKGLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQIDLK 954
+ ++ + ++ + G + +
Sbjct: 260 CAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFD 311
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 46/337 (13%), Positives = 90/337 (26%), Gaps = 58/337 (17%)
Query: 605 SSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSL 664
+ LE+L + S H + P+ + + Y +
Sbjct: 105 TELEVLALGS-HGEKVNERLFGPKGISANMSDEQKQKMRMH--------------YQKTF 149
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTS 724
+++ E L N P + + +G + + +++ + T
Sbjct: 150 VDYDPREDFSDLI-KDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRLTK 207
Query: 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERL 784
L +G+ + + + L +E+Y C L
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262
Query: 785 EALPKGLHNLTSLQELRIG--RGVELPSLEEEDGLPT------NLQSLDIWGNIEIWKSM 836
LP L L +Q + + RG+ L+++ +Q + I N +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFP 321
Query: 837 IERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSL--EISFFPNLERL---------- 884
+E L LE L L L
Sbjct: 322 VE--TSLQKMKKLGMLECLYN-----------QLEGKLPAFGSEIKLASLNLAYNQITEI 368
Query: 885 -SSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRL 920
++ + + L H KLKY P S+ +
Sbjct: 369 PANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVM 404
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 76/585 (12%), Positives = 164/585 (28%), Gaps = 103/585 (17%)
Query: 381 KLRELHILRCSKLKGTFPE---HLPALEMLVIEG----CEELSVSVSRLPALCKLQIGGC 433
++ L L G P+ L LE+L + E + A +
Sbjct: 82 RVTGLS-LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140
Query: 434 KKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNG 493
++ + D P + + K + + T I + N
Sbjct: 141 MRM--HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI----TLKDTQIGQLSNN 194
Query: 494 LLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 553
+ +S + KL+ + +CE E Q
Sbjct: 195 ITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWD 246
Query: 554 SLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTI 612
+L L ++ +Y C +L P + +++ IN+ S +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQL-------------K 292
Query: 613 SSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGI-QCSSSSSRRYTSSLLEHLHIE 671
+L + ++ + + +N++T VE + + L L
Sbjct: 293 DDWQALADAP---VGEKIQIIY-IGYNNLKTFPVETSLQKMKK----------LGMLEC- 337
Query: 672 SCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNN-TSLEIISI 730
N+L L + G+ L SL + ++ I +E +S
Sbjct: 338 ---------LYNQLEGKLPAF--GSE-IKLASLNLAYN-QITEIPANFCGFTEQVENLSF 384
Query: 731 GSCGNLKILPS--GLHNLCQLQEIEIWN-------CGNLVSFPEGGLPCAKLMRLEIYGC 781
LK +P+ ++ + I+ N + + +
Sbjct: 385 AHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 782 ERLEALPKG-LHNLTSLQELRIGR-------GVELPSLEEEDGLPTNLQSLDIWGNIEIW 833
++ PK + L + + L E L S+D+ N ++
Sbjct: 444 -QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KL- 500
Query: 834 KSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP----LPASLTSLEISFFPNLER------ 883
+ + L +++ FP ++L I + +
Sbjct: 501 -TKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557
Query: 884 LSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928
I LT+L++ ++ + + ++ L I+ P I
Sbjct: 558 WPEGITLCPSLTQLQIGSND-IRKVN-EKITPNISVLDIKDNPNI 600
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 79/563 (14%), Positives = 154/563 (27%), Gaps = 100/563 (17%)
Query: 87 KLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDC 145
R+ SL G+ +PD+IG L L L L +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-------------------V 119
Query: 146 RELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELK 205
E + + + + + + + + +
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
Query: 206 LLMHLRGALEIS--KLENV-KDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEM 262
+ + + V K V L++ + + + + E
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRL--------TKLRQFYMGNSPFV--AENICEAWEN 229
Query: 263 GVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALP-SMGQLPS 321
+ + + + +L ++ NC T LP + LP
Sbjct: 230 ENSEYAQQYKTE-------------DLKWD--NLKDLTDVEVYNCPNLTKLPTFLKALPE 274
Query: 322 LKHLTVRG--MSRVKRLGSEFYGNDPPIPFPCLETL-LFENMREWEDWISHGSSQGVVEG 378
++ + V ++L ++ ++ + + N + +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN------LKTFPVE---TS 325
Query: 379 FPKLRELHILRCS--KLKGTFPE--HLPALEMLVIEGC--EELSVSV-SRLPALCKLQIG 431
K+++L +L C +L+G P L L + E+ + + L
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 432 GCK--KVVWESATGHLG-------SQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMK 482
K + + S N + S PL P K + I++
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIG----SVDGKNFDPLDPTPFKGINVSSINL- 440
Query: 483 EQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGC 542
I K L S L + + L + KD+ + L + L
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTY-LLTSIDLRFN 498
Query: 543 QGLVKLPQS--SLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAW 599
+ L KL + +L L I + S FP + S LK I + +
Sbjct: 499 K-LTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQG----- 551
Query: 600 MCDTNSSLEIL--TISSCHSLTY 620
N +L I+ C SLT
Sbjct: 552 ----NRTLREWPEGITLCPSLTQ 570
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 21/172 (12%), Positives = 45/172 (26%), Gaps = 29/172 (16%)
Query: 69 LSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF---ELPDSIGDLRYLRYLNLSGTHIR 125
R H + + + + S + +I
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 126 ALPESVNKLYNLHTL-------------------LLEDCRELKKLCADMGNLIKLHHHNN 166
+ ++V +L L E ++ K NL L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256
Query: 167 SNTDSLEEMPLGIGKLTCLQTL----CNFVVG---KDSGSGLSELKLLMHLR 211
N +L ++P + L +Q + + G KD L++ + ++
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLH 138
+ L K+++L + + G L LNL+ I +P + +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 139 TLLLEDCRELKKL--CADMGNLIKLHH----HNN---SNTDSLEEMPLGIGKLTCLQTL 188
L + LK + D ++ + +N + + + + K + ++
Sbjct: 381 NLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 14/122 (11%)
Query: 80 SILPKLFKLQRLRAF-----SLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPES--VN 132
+ L + + + + ++ + L ++L + L +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 133 KLYNLHTLLLEDCRELKKLCADMGNLIKL------HHHNNSNTDSLEEMPLGIGKLTCLQ 186
L L + L K N L + + +L E P GI L
Sbjct: 511 TLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569
Query: 187 TL 188
L
Sbjct: 570 QL 571
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 19/123 (15%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALP--------ES 130
+ P FK + + +L I + P + L +NL G + +P E+
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 131 VNKLYNLHTLLLEDCRELKKLCAD--MGNLIKLHH---HNNSNTDSLEEMPLGIGKLTCL 185
Y L ++ L + L KL D L L NS + P + L
Sbjct: 484 FKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS----FSKFPTQPLNSSTL 538
Query: 186 QTL 188
+
Sbjct: 539 KGF 541
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 12/112 (10%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIF-------ELPDSIGDLRYLRYLNLSGTHIRALPESVN 132
+ L+ F +R E P+ I L L + IR + E +
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585
Query: 133 KLYNLHTLLLEDCRELK---KLCADMGNLIKLHHHNNSNTDSLEEMPLGIGK 181
N+ L ++D + + D L I +
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 78/484 (16%), Positives = 161/484 (33%), Gaps = 52/484 (10%)
Query: 469 QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528
+ +L +I+ + + + SHN I L +L+ L +L
Sbjct: 32 YISELWTSDILSLSKLRILIISHN----RIQYLDISVFKFNQELEYLDL-----SHNKLV 82
Query: 529 ELSCR----LEYLTLSGCQGLVKLPQSSL--SLSSLREIVIYKCSSLVSFPEVALPSKLK 582
++SC L++L LS LP ++S L+ + + L + +
Sbjct: 83 KISCHPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNI 140
Query: 583 KINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIR 642
+ E L+ S H + + + + + N+
Sbjct: 141 SKVLLVLGETYGEKED-----PEGLQDFNTESLHIVFPTNK--EFHFILDVSVKTVANLE 193
Query: 643 TLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCI-FSKNELPATLESLEVGNLPPSL 701
++ ++ + S + L+ S L+L I + N L+ + ++
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV----WHTTV 249
Query: 702 KSLGVFECSKLESIAERLDN--NTSLEIISIGSCGN--LKILPSGLHNLCQLQEIEIWNC 757
+ + R + TSL+ +SI + S ++ + I+ +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309
Query: 758 GNLVSFPEGGL-PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDG 816
+ + L+ + + + +LT L+ L + + +L L +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAE 368
Query: 817 L---PTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD-DDMVSFPLPASLTS 872
+ +LQ LDI N S E+ SL L + D + LP +
Sbjct: 369 MTTQMKSLQQLDISQN---SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425
Query: 873 LEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPS--SLLRLWIEG------ 924
L++ ++ + +V L+ L EL + +LK P SL ++W+
Sbjct: 426 LDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483
Query: 925 CPLI 928
CP I
Sbjct: 484 CPRI 487
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 84/500 (16%), Positives = 157/500 (31%), Gaps = 68/500 (13%)
Query: 105 PDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCRELKKL-CADMGNLIKLH 162
I L LR L +S I+ L SV L L L + L K+ C NL L
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLD 96
Query: 163 HHNNSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLE 220
N + + +P+ G ++ L+ L S + L + +L L ISK+
Sbjct: 97 LSFN----AFDALPICKEFGNMSQLKFLGL------STTHLEKSSVLPIAH--LNISKVL 144
Query: 221 NVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIK 280
V ++ +G ++ L T+ + + + L+ +N++
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLED 203
Query: 281 GYEGMKFPTWLGDSSFSNLVTLKFKNCGMC-TALPSMGQLPSLKHLTVRGMSRVKRLGSE 339
+ L L N + + QL + +S VK L +
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQ 262
Query: 340 FYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGT--- 396
D L+ L + + + E F + + S +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQV---VSDVFGFPQSYIYEIFSNMNIKN-FTVSGTRMVHML 318
Query: 397 FPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDA 456
P + L L +L+ L Q
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE--------------TLILQM------- 357
Query: 457 SNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLV 516
NQ+ + + +++ L+ +D+ + + + G SL L ++S L +
Sbjct: 358 -NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTI 415
Query: 517 AEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVA 576
L R++ L L + + +P+ + L +L+E+ + L S P+
Sbjct: 416 FR----------CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGI 463
Query: 577 LPS--KLKKINI----WHCD 590
L+KI + W C
Sbjct: 464 FDRLTSLQKIWLHTNPWDCS 483
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 74/338 (21%), Positives = 109/338 (32%), Gaps = 85/338 (25%)
Query: 574 EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQL 633
L + +N+ L +LP+ + + L I +LT LP +L
Sbjct: 35 RACLNNGNAVLNVGESG-LTTLPDCLP----AHITTLVIPDN-NLT-----SLPALPPEL 83
Query: 634 DILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHL--HIESCLSLTCIF-SKNELPATLE 690
L + L L L L+ LPA
Sbjct: 84 RTLEVSGNQ----------------------LTSLPVLPPGLLELSIFSNPLTHLPA--- 118
Query: 691 SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQ 750
LP L L +F +L S+ L + S L LP+ LC+L
Sbjct: 119 ------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSV----SDNQLASLPALPSELCKL- 166
Query: 751 EIEIWNCGN--LVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL 808
N L S P + L L + +L +LP L L R L
Sbjct: 167 -----WAYNNQLTSLPML---PSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSL 216
Query: 809 PSLEEEDGLPTNLQSLDIWGN-IEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-L 866
P+L P+ L+ L + GN + + S L+ L + G + S P L
Sbjct: 217 PAL------PSGLKELIVSGNRLTSLPVLP---------SELKELMVSGNR--LTSLPML 259
Query: 867 PASLTSLEISFFPN-LERLSSSIVDLQILTELRLYHCR 903
P+ L SL + N L RL S++ L T + L
Sbjct: 260 PSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP 295
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 4e-08
Identities = 68/339 (20%), Positives = 110/339 (32%), Gaps = 70/339 (20%)
Query: 517 AEEEKDQQQQLCEL-SCR---LEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSF 572
AEE + + + ++ +C L + L LP + + +VI + L S
Sbjct: 21 AEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLPA--HITTLVIPDNN-LTSL 76
Query: 573 PEVALPSKLKKINIWHCDALKSLPEAWMCDTN---------------SSLEILTISSCHS 617
P LP +L+ + + L SLP S L L I
Sbjct: 77 PA--LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ- 132
Query: 618 LTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLT 677
LT LP L LS + + ++ S L L LT
Sbjct: 133 LT-----SLPVLPPGLQELSVSDNQLASLPALP------------SELCKLWA-YNNQLT 174
Query: 678 CIFSKNELPATLESLEVGN-----LPPSLKSLGVFECS--KLESIAERLDNNTSLEIISI 730
+ LP+ L+ L V + LP L +L S+ L +
Sbjct: 175 SL---PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIV--- 228
Query: 731 GSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKG 790
S L LP +L+E+ + L S P + L+ L +Y +L LP+
Sbjct: 229 -SGNRLTSLPV---LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPES 279
Query: 791 LHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829
L +L+S + + G L + + S +
Sbjct: 280 LIHLSSETTVNL-EGNPLSERTLQ--ALREITSAPGYSG 315
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 5e-08
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLY------ 135
LP L LR + G + LP L L + TH+ ALP + KL+
Sbjct: 76 LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133
Query: 136 --------NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCL 185
L L + D + L L A L KL +NN L +P+ L L
Sbjct: 134 TSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPMLPSGLQEL 186
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 82 LPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLY----- 135
LP L LQ L S+ + LP +L L N T + ALP + +L
Sbjct: 176 LPMLPSGLQEL---SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 232
Query: 136 ---------NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQ 186
L L++ R L L L+ L + N L +P + L+
Sbjct: 233 LTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN----QLTRLPESLIHLSSET 287
Query: 187 TL 188
T+
Sbjct: 288 TV 289
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 31/148 (20%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 63 TFLPVTLSNSSR---GHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL----- 114
T LPV + LP L L + G + LP L+ L
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151
Query: 115 ------------RYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLH 162
L + +LP L L + D + L L L KL
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTSLPML---PSGLQELSVSDNQ-LASLPTLPSELYKLW 207
Query: 163 HHNNSNTDSLEEMPLGIGKLTCLQTLCN 190
+NN L +P L L N
Sbjct: 208 AYNN----RLTSLPALPSGLKELIVSGN 231
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 11/103 (10%)
Query: 88 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRE 147
+ + ++ LP + LR L +SG + +LP L L
Sbjct: 60 PAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSN----P 112
Query: 148 LKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190
L L A L KL N L +P+ L L N
Sbjct: 113 LTHLPALPSGLCKLWIFGN----QLTSLPVLPPGLQELSVSDN 151
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLE 173
LN+ + + LP+ + ++ TL++ D L L A L L N L
Sbjct: 42 NAVLNVGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPALPPELRTLEVSGN----QLT 94
Query: 174 EMPLGIGKLTCLQTLCN 190
+P+ L L N
Sbjct: 95 SLPVLPPGLLELSIFSN 111
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 96/409 (23%), Positives = 147/409 (35%), Gaps = 91/409 (22%)
Query: 548 LPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSS 606
+ ++S + L+E + + S+L P E + + ++ P
Sbjct: 3 INPRNVSNTFLQEPLRH-SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQRE 59
Query: 607 LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLE 666
+ + + C L R +L+ L+ + +L LE
Sbjct: 60 MAVSRLRDC----------LDRQAHELE-LNNLGLSSLPEL--------------PPHLE 94
Query: 667 HLHIESCLSLTCIFSKNELPATLESLEVGN--------LPPSLKSLGVFECSKLESIAER 718
L SC SLT + ELP +L+SL V N LPP L+ LGV +LE + E
Sbjct: 95 SLVA-SCNSLTEL---PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLPE- 148
Query: 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGN--LVSFPEGGLPCAKLMRL 776
L N++ L+II + + +LK LP +L + GN L PE L +
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFI------AAGNNQLEELPELQ-NLPFLTAI 200
Query: 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN-IEIWKS 835
L+ LP +L S+ ELP L L ++ N ++
Sbjct: 201 YADNN-SLKKLPDLPLSLESI-VAGNNILEELPEL----QNLPFLTTIYADNNLLKTLPD 254
Query: 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSFP-LPASLTSLEIS---------FFPNLERLS 885
+ SL L +R + P LP SLT L++S PNL L+
Sbjct: 255 LP---------PSLEALNVRDN--YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303
Query: 886 SS-------IVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPL 927
+S L EL + + KL P LP L RL L
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNHL 349
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 86/469 (18%), Positives = 159/469 (33%), Gaps = 90/469 (19%)
Query: 462 LVGPLKPQLPKLEELEIIDMKEQ-----TYIWKSHNGLL---QDISSLKRLTIA------ 507
P + E+ + +++ + ++ GL + L+ L +
Sbjct: 46 WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE 105
Query: 508 ---SCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIY 564
L+SL + + + L +L LEYL +S Q L KLP + S L+ I +
Sbjct: 106 LPELPQSLKSL--LVDNNNLKALSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVD 161
Query: 565 KCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGV 624
S L P+ LP L+ I + L+ LPE L + + L
Sbjct: 162 NNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPELQNL---PFLTAIYADNNS-LK----- 208
Query: 625 QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684
+LP L+ + N + E L ++ ++ L + +
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPF----------LTTIYADNN-LLKTL---PD 254
Query: 685 LPATLESLEVGN-----LPPSLKSLGVFECS--KLESIAERLDNNTSLEIISIGSCGNLK 737
LP +LE+L V + LP +SL + S ++E N L S ++
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA----SSNEIR 310
Query: 738 ILPSGLHNLCQLQEIEIWNCGN--LVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLT 795
L +L +L N N L+ P +L RL L +P+ NL
Sbjct: 311 SLCDLPPSLEEL------NVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLK 360
Query: 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855
L L + P +++ L + ++ + +L++L +
Sbjct: 361 QLHV----EYNPLREFPDI---PESVEDLRMNSHLAEVPELP---------QNLKQLHVE 404
Query: 856 GCDDDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903
+ FP +P S+ L ++ ++ + L + H
Sbjct: 405 TN--PLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 100/579 (17%), Positives = 184/579 (31%), Gaps = 147/579 (25%)
Query: 81 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHI-RALPESVNKLYNLHT 139
I P+ L+ ++ E+P +++ + + R P + +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 140 LLLEDCRE------------LKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQT 187
L DC + L L +L L N SL E+P L L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN----SLTELPELPQSLKSLLV 118
Query: 188 LCNFVVGKDSGSGLSEL-KLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 246
N + LS+L LL +L + ++LE + ++ N+ LK + +
Sbjct: 119 DNN------NLKALSDLPPLLEYLG--VSNNQLEKLPELQNS--------SFLKIIDVD- 161
Query: 247 TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKN 306
+ +L++ +L + N
Sbjct: 162 ------------------------NNSLKKL---------------PDLPPSLEFIAAGN 182
Query: 307 CGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETL-LFENMREWED 365
+ LP + LP L + + +K+L P LE++ N+
Sbjct: 183 NQL-EELPELQNLPFLTAIYADN-NSLKKL---------PDLPLSLESIVAGNNI----- 226
Query: 366 WISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPAL 425
+ ++ P L ++ + LK T P+ P+LE L + + +L
Sbjct: 227 -LEELPE---LQNLPFLTTIY-ADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL-PQSL 279
Query: 426 CKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQT 485
L + +L N+ +SN+ + L P LEEL +
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNA-----SSNE---IRSLCDLPPSLEELNV------- 324
Query: 486 YIWKSHNGLLQ---DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGC 542
S+N L++ L+RL + L + EL L+ L +
Sbjct: 325 ----SNNKLIELPALPPRLERLIASFN-HLAEVP------------ELPQNLKQLHVEYN 367
Query: 543 QGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCD 602
L + P S+ LR S L PE LP LK++++ L+ P+
Sbjct: 368 P-LREFPDIPESVEDLRM-----NSHLAEVPE--LPQNLKQLHVETNP-LREFPDI---- 414
Query: 603 TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNI 641
S+E L ++S + + + D+ +
Sbjct: 415 -PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLY---- 135
LP+L L L + LPD L L + T + LP+S+ L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 136 ----------NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCL 185
NL+ L ++ LC +L +L+ NN L E+P +L L
Sbjct: 288 IFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342
Query: 186 QTLCN 190
N
Sbjct: 343 IASFN 347
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 25/125 (20%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLY---- 135
S+ L+ L + ELP+ L+ L N + + LP + L
Sbjct: 85 SLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141
Query: 136 ------------NLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLT 183
L + +++ LKKL +L + NN LEE+P + L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN----QLEELP-ELQNLP 195
Query: 184 CLQTL 188
L +
Sbjct: 196 FLTAI 200
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 7e-09
Identities = 85/487 (17%), Positives = 158/487 (32%), Gaps = 68/487 (13%)
Query: 372 SQGVVEGFPKLRELHI----LRCSKLKGTFPEHLPALEMLVIEGCE----ELSVSVSRLP 423
+G L EL + L + LK + +L AL L + + L S +L
Sbjct: 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148
Query: 424 ALCKLQIGGCK-KVVWESATGHLGSQNSVVCRDASNQVFLVGPLK----PQLPKLEELEI 478
+L + + +V E L + A+N ++ + + LEI
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208
Query: 479 IDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSL------VAEEEKDQQQQLCELSC 532
+D+ + IS + ++ + + + +++ L S
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS- 267
Query: 533 RLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWHC 589
+ +L LS + L L L+ + + + + A L+ +N+ +
Sbjct: 268 -VRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYN 324
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGV-QLPRSLKQLDILSCDNIRTLTVEE 648
L L + + + + H + L+ LD L + + T+
Sbjct: 325 L-LGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD-LRDNALTTIHFIP 381
Query: 649 GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708
I S + + L + + S+N L E+L++ + L
Sbjct: 382 SIPDIFLSGNKLVT-----LPKINLTANLIHLSENRL----ENLDILYFLLRVPHL---- 428
Query: 709 CSKLESIAERLD-NNTSLEIISIGSCGNLKILPSGLHNLCQLQ----EIEIWNCGNLVSF 763
+ L N S PS +L QL +++ L
Sbjct: 429 --------QILILNQNRFSSCSGDQ------TPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 764 PEGGLPCAKLMRLEIYGCERLEALPKG-LHNLTSLQELRIGRGVELPSLEEEDGLPTNLQ 822
GL L L + L +LP G +LT+L+ L + L L + LP NL+
Sbjct: 475 VFEGLS--HLQVLYLNHN-YLNSLPPGVFSHLTALRGLSL-NSNRLTVLSH-NDLPANLE 529
Query: 823 SLDIWGN 829
LDI N
Sbjct: 530 ILDISRN 536
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 118/651 (18%), Positives = 209/651 (32%), Gaps = 76/651 (11%)
Query: 52 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL--PDSIG 109
+ L + L LS + + S P L +LQ L L + ++
Sbjct: 20 PQVLNTTERLL------LSFNYIRTVTASSFPFLEQLQLL---ELGSQYTPLTIDKEAFR 70
Query: 110 DLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCR-----ELKKLCADMGNLIKLHH 163
+L LR L+L + I L L++L L L C ++ L +L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 164 HNNSNTDSLEEMPLGIGKLTCLQTL----CNF-VVGKDSGSGLSELKLLMHLRGALEISK 218
N SL P GKL L+++ +V + L L L +
Sbjct: 131 SKN-QIRSLYLHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS---LAANS 185
Query: 219 LENVKDVGNAKEARLDGKKNLKELLL---RWTRSTDGSSSREAETEMGVLDMLKPHTNLE 275
L + V K L+ L + WT G+ S +L H
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 276 QFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSM-GQLPSLKHLTVRGMSRVK 334
F + T+ G + S++ L + + + + L LK L + K
Sbjct: 246 GFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 335 RLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRC--SK 392
FYG L+ L + G PK+ + + + +
Sbjct: 305 IADEAFYG------LDNLQVLNLSYNL-----LGE-LYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 393 LKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVV 452
++ + L L+ L + L+ ++ +P++ + + G K + + N +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDN-ALT-TIHFIPSIPDIFLSGNK---LVTLPKINLTANLIH 407
Query: 453 CRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWK-SHNGLLQDISSLKRLTIASCPK 511
+ + + ++P L+ L + Q S + + SL++L +
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILIL----NQNRFSSCSGDQTPSENPSLEQLFLGEN-M 462
Query: 512 LQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLV 570
LQ E + LS L+ L L+ L LP S L++LR + + L
Sbjct: 463 LQLA--WETELCWDVFEGLS-HLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLT 517
Query: 571 SFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSL 630
LP+ L+ ++I + L + D SL +L I+ + L
Sbjct: 518 VLSHNDLPANLEILDISR-NQLLAPNP----DVFVSLSVLDITHNKFICECELSTFINWL 572
Query: 631 KQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFS 681
++ I C S S L L E C + S
Sbjct: 573 NHTNVTIAGP------PADIYCVYPDSFSGVS--LFSLSTEGCDEEEVLKS 615
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 64/388 (16%), Positives = 129/388 (33%), Gaps = 61/388 (15%)
Query: 534 LEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALPS--KLKKINIWHCD 590
E L LS + + SS L L+ + + + ++ + A + L+ +++
Sbjct: 26 TERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 591 ALKSLPEAWMCDTNSSLEILTISSCH------SLTYFGGVQLPRSLKQLDILSCDNIRTL 644
+ L L L + C YF ++ +L +LD LS + IR+L
Sbjct: 85 -IYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLK---ALTRLD-LSKNQIRSL 138
Query: 645 TVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSL 704
+ +S L+ + S + + P ++L +L + SL
Sbjct: 139 YLHPSFGKLNS---------LKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSL--AANSL 186
Query: 705 GVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP 764
N LEI+ + G + N + + + ++
Sbjct: 187 YSRVSVDWGKCMNPF-RNMVLEILDVSGNGWTVDITGNFSNA--ISKSQAFSLILAHHIM 243
Query: 765 EGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE--DGLPTNLQ 822
G + + + GL +S++ L + G + SL + L +L+
Sbjct: 244 GAGFGFHNIKDPD-------QNTFAGLAR-SSVRHLDLSHG-FVFSLNSRVFETLK-DLK 293
Query: 823 SLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFF---P 879
L++ N +I + I F+G +L+ L + L L S F P
Sbjct: 294 VLNLAYN-KI--NKIADEA-FYGLDNLQVLNLSYN-----------LLGELYSSNFYGLP 338
Query: 880 NLERLSSSIVDLQILTELRLYHCRKLKY 907
+ + + I+ + KL+
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 67/452 (14%), Positives = 120/452 (26%), Gaps = 124/452 (27%)
Query: 497 DISSLKRLTIASCPKLQSLVAEEEK-------DQQQQLCELSC---RLEYLTLSGCQGLV 546
++ + ++ L SL ++ L +L C + L LS L
Sbjct: 29 EMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLT 88
Query: 547 KLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSS 606
L + + L + + + KL +N L L + N
Sbjct: 89 YL---ACDSNKLTNLDVTPLT------------KLTYLNCDTNK-LTKLDVS----QNPL 128
Query: 607 LEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLE 666
L L + +L ++D+ + L C + +
Sbjct: 129 LTYLNCARN-------------TLTEIDVSHNTQLTEL------DCHLNK-------KIT 162
Query: 667 HLHIESCLSLTCI-FSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSL 725
L + LT + S N++ L+V L L + + L+ N L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKI----TELDVSQNK-LLNRLNCDTN-NITKLD--LNQNIQL 214
Query: 726 EIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLE 785
+ S L + + L QL + L L KL L + L
Sbjct: 215 TFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDVSTLS--KLTTLHCIQTD-LL 267
Query: 786 ALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHG 845
+ L + T L + ++ L+ T L LD
Sbjct: 268 EID--LTHNTQLIYFQAEGCRKIKELDVTH--NTQLYLLDCQAA---------------- 307
Query: 846 FSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSS--------IVDLQILTEL 897
+T L++S P L L + + L L
Sbjct: 308 -----------------------GITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSL 344
Query: 898 RLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIE 929
+ ++ F G +L + I
Sbjct: 345 SCVNA-HIQDFSSVGKIPALNNNFEAEGQTIT 375
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 9e-09
Identities = 76/482 (15%), Positives = 139/482 (28%), Gaps = 96/482 (19%)
Query: 469 QLPKLEELEIIDMKEQTYIWKSHNGL--------LQDISSLKRLTIASCPKLQSLVAEEE 520
L L+EL + +HN + ++++L+ L ++S K+QS+
Sbjct: 122 HLKTLKELNV-----------AHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI----Y 165
Query: 521 KDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSK 580
+ L ++ L LS + + + L ++ + ++ +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC---- 220
Query: 581 LKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDN 640
L L L + + +L F L L L I
Sbjct: 221 --------IQGLAGL-------EVHRLVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRL 264
Query: 641 IRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPS 700
+ I + +S L + IE + F + LE+ N
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-------WQHLELVNC--K 315
Query: 701 LKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNL 760
+ L+ + +N S +L+ L L L
Sbjct: 316 FGQFPTLKLKSLKRL--TFTSNKGGNAFSEVDLPSLEFL--DLSR-NGLSFKGC------ 364
Query: 761 VSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIG--RGVELPSLEEEDGLP 818
S + G L L++ + + L L+ L ++ L
Sbjct: 365 CSQSDFGTT--SLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 819 TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFF 878
NL LDI + G F+G SSL L++ G + +
Sbjct: 422 -NLIYLDISHT---HTRVAFNGI-FNGLSSLEVLKMAGN-------SFQENFLPDIFTEL 469
Query: 879 PNLERLS-----------SSIVDLQILTELRLYHCRKLKYFPKKGLP--SSLLRLWIEGC 925
NL L ++ L L L + + LK P +SL ++W+
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528
Query: 926 PL 927
P
Sbjct: 529 PW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 93/555 (16%), Positives = 173/555 (31%), Gaps = 107/555 (19%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALPESV-NKLYN 136
+ F L+ L I + + L +L L L+G I++L + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 137 LHTLLLEDCRELKKLCAD----MGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL---- 188
L L+ + L L + L +L+ +N ++P LT L+ L
Sbjct: 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSS 158
Query: 189 CNF-VVGKDSGSGLSELK-LLMHL-----------RGALEISKLENVKDVGNAKEARLDG 235
+ L ++ L + L GA + +L + N +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 236 K--KNLKEL-LLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292
+ L L + R + + + L+ L + +E+F + + +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRL---AYLDYYLDDI 274
Query: 293 DSSFSNLVTLKFKNCGMC--TALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFP 350
F+ L + + + +HL + +G P +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK---------FGQFPTLKLK 325
Query: 351 CLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHI----LRCSKLKGTFPEHLPALEM 406
L+ L F + + G + P L L + L +L+
Sbjct: 326 SLKRLTFTS--------NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 407 LVIEGCE--ELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVG 464
L + +S + L L L + + +
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQH-------------------------SNLKQMS 412
Query: 465 PLKP--QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKD 522
L L L+I T+ + NG+ +SSL+ L +A Q +
Sbjct: 413 EFSVFLSLRNLIYLDI----SHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-- 465
Query: 523 QQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--S 579
EL L +L LS CQ L +L ++ + LSSL+ + + L S P+ +
Sbjct: 466 ----FTELR-NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLT 518
Query: 580 KLKKINI----WHCD 590
L+KI + W C
Sbjct: 519 SLQKIWLHTNPWDCS 533
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/283 (18%), Positives = 97/283 (34%), Gaps = 45/283 (15%)
Query: 626 LPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNEL 685
LP S K LD LS + +R L S S + L+ L + S+ E+
Sbjct: 26 LPFSTKNLD-LSFNPLRHL--------GSYSFFSFPE--LQVLDL----------SRCEI 64
Query: 686 PATLESLEVGNLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSCGNLKILPSG-L 743
T+E +L L +L + + ++S+A +SL+ + NL L + +
Sbjct: 65 -QTIEDGAYQSLS-HLSTL-ILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI 120
Query: 744 HNLCQLQEIEI-WNCGNLVSFPEGGL--PCAKLMRLEIYGCERLEALPKG-LHNLTSLQE 799
+L L+E+ + N + SF L L++ +++++ L L +
Sbjct: 121 GHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177
Query: 800 LRIG---RGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856
L + + ++ L L + N + + G + L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN--FDSLNVMKT-CIQGLAGLEVHRL-- 232
Query: 857 CDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRL 899
+ F +L + S L L+ L L
Sbjct: 233 ---VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 17/148 (11%), Positives = 42/148 (28%), Gaps = 4/148 (2%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHT 139
+ +L+ L + + + +++L + + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 140 LLLED----CRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 195
L C L+ + + + E + L C +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 196 DSGSGLSELKLLMHLRGALEISKLENVK 223
L LK H + + S+ E ++
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLE 329
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 11/109 (10%)
Query: 85 LFKLQRLRAFSLRGYHIFELPDS--IGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLL 142
R++ L+ I + + L +LNL I + V L TL L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198
Query: 143 EDCRELKKLCADMGNLIKLHH---HNNSNTDSLEEMPLGIGKLTCLQTL 188
+ L + + + + NN L + + L+
Sbjct: 199 SSNK-LAFMGPEFQSAAGVTWISLRNN----KLVLIEKALRFSQNLEHF 242
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 77/431 (17%), Positives = 149/431 (34%), Gaps = 65/431 (15%)
Query: 534 LEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWHCD 590
E L S L + ++ S L +L + + +C + E +L + +
Sbjct: 35 TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP 92
Query: 591 ALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP--RSLKQLDILSCDNIRTLTVEE 648
L + E + +L+ L ++ + L ++L+ L L ++I ++ + +
Sbjct: 93 -LIFMAETALSGP-KALKHLFFIQTG-ISSIDFIPLHNQKTLESLY-LGSNHISSIKLPK 148
Query: 649 GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNL----------- 697
G L+ L ++ ++ + E ++L+ +L
Sbjct: 149 GFPTEK----------LKVLDFQNN-AIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 698 -----PPSLKSLGVFECSKLESIAERLDNNT--SLEIISIGSCGNLKILPSGLHNLCQLQ 750
+SL L I + L N+T SL + + + I P+ LC++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 751 EIEIWNCGNLVSFPEGGL--PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL 808
I + + L L++ L LP GL L++L++L + +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KF 313
Query: 809 PSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRL-----EIRGCDDDM 861
+L + P +L L I GN + + G +LR L +I D
Sbjct: 314 ENLCQISASNFP-SLTHLSIKGNTKR--LELGTG-CLENLENLRELDLSHDDIETSDCCN 369
Query: 862 VSFPLPASLTSLEISFFPN-LERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL---PSS 916
+ + L SL +S+ N L + + + L L L R LK +
Sbjct: 370 LQLRNLSHLQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL 426
Query: 917 LLRLWIEGCPL 927
L L + L
Sbjct: 427 LKVLNLSHSLL 437
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 68 TLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRA 126
T + ++ ++ L ++ + + +L+ ++ F + ++ L+ L+L+ TH+
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292
Query: 127 LPESVNKLYNLHTLLLEDCRELKKLCADM-GNLIKLHH-HNNSNTDSLEEMPLGIGKLTC 184
LP + L L L+L + + LC N L H NT LE + L
Sbjct: 293 LPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 185 LQTL 188
L+ L
Sbjct: 352 LREL 355
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 94/501 (18%), Positives = 157/501 (31%), Gaps = 88/501 (17%)
Query: 470 LPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 529
L+ L QT I L + +L+ L + S + S+ +
Sbjct: 104 PKALKHLFF----IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK-------GFP 151
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCS-SLVSFPEVALPS-KLKKINI 586
+L+ L + L + +S L + + + A S + +N
Sbjct: 152 TE-KLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209
Query: 587 WHCDALKSLPEAWMCDTNSSLEILTISSCH----SLTYFGGVQLPRSLKQLDILSCDNIR 642
L + + T SL + T S F G+ S++ ++ L
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESIN-LQKHYFF 267
Query: 643 TLTVEEGIQCSSSSSRRYTSSL----LEHLHIES-------CLSLTCI-FSKNELPATLE 690
+ SS++ S L L H+ +L + S N+ L
Sbjct: 268 NI---------SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLC 317
Query: 691 SLEVGNLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSC--GNLKILPSGLHNLC 747
+ N P SL L + +K + L+N +L + + L NL
Sbjct: 318 QISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 748 QLQEIEI-WNCGNLVSFPEGGL-PCAKLMRLEIYGCERLEALPKG--LHNLTSLQELRIG 803
LQ + + +N +S C +L L++ RL+ NL L+ L +
Sbjct: 377 HLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLS 433
Query: 804 RGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD--- 858
L E+ DGLP LQ L++ GN K I++ L L + CD
Sbjct: 434 -HSLLDISSEQLFDGLP-ALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 859 -DDMVSFPLPA---------SLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYF 908
D L LTS I +L+ + L L +
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-----------YLNLAS-NHISII 538
Query: 909 PKKGLP--SSLLRLWIEGCPL 927
LP S + + PL
Sbjct: 539 LPSLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 103/615 (16%), Positives = 187/615 (30%), Gaps = 112/615 (18%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPESV-NKLYN 136
+I F L L L I+ + D+ L L L+ + + E+ +
Sbjct: 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Query: 137 LHTLLLEDCR--ELKKLC-ADMGNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTL---- 188
L L + + + L L+ +N + + L L+ L
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN----HISSIKLPKGFPTEKLKVLDFQN 162
Query: 189 CNF-VVGKDSGSGLSELKLL-MHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 246
+ K+ S L + L ++L G +I+ + E + L
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGI----------EPGAFDSAVFQSLNFGG 211
Query: 247 TRSTDGSSSREAETEMGVLDMLK-PHTNLEQFCIKGYEGMKFP------------TWLGD 293
T++ + + L + + E +EG+ +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 294 SSF---SNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFP 350
++F S L L + + L +LK L + ++ + L N FP
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA-NKFENLCQISASN-----FP 325
Query: 351 CLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHI----LRCSKLKGTFPEHLPALEM 406
L L + G +E LREL + + S +L L+
Sbjct: 326 SLTHLSIKGNT-----KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 407 LVIEGCEELSVSV---SRLPALCKLQIGGCK--KVVWESATGHLG-------SQNSVVCR 454
L + E LS+ P L L + + +S +L S + +
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--D 438
Query: 455 DASNQVFLVGPLKPQLPKLEELEI----IDMKEQTYIWKSHNGLLQDISSLKRLTIASCP 510
+S Q+F LP L+ L + LQ + L+ L ++ C
Sbjct: 439 ISSEQLF------DGLPALQHLNLQGNHF-----PKGNIQKTNSLQTLGRLEILVLSFC- 486
Query: 511 KLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLV 570
L S+ Q L + ++ LS + L +LS + + + +
Sbjct: 487 DLSSI-------DQHAFTSLK-MMNHVDLSHNR-LTSSSIEALSHLKGIYLNLAS-NHIS 536
Query: 571 SFPEVALP--SKLKKINI----WHCD-ALKSLPEAWMCDTNSSLEILTISSCHSLTYFGG 623
LP S+ + IN+ C + E W + LE + C + G
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE-WYKENMQKLEDTEDTLCENPPLLRG 595
Query: 624 VQLPRSLKQLDILSC 638
L + LSC
Sbjct: 596 ----VRLSDVT-LSC 605
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 7e-08
Identities = 49/397 (12%), Positives = 113/397 (28%), Gaps = 61/397 (15%)
Query: 471 PKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEK---DQQQQL 527
P L L++ ++ + +L+S+ +L
Sbjct: 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132
Query: 528 CELSC-RLEYLTLSGCQGL--VKLPQSSLSLSSLREIVIYKCS-------SLVSFPEVAL 577
+ LE L L C G L ++ +++ + S L +
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ--H 190
Query: 578 PSKLKKINIWHCDALKSLPEAWMC--DTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635
+ L+ +N + + K P+ SL + + L G + +L++
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250
Query: 636 LSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVG 695
S + +++++ L + P + L
Sbjct: 251 GSLNED-------------------IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL--F 289
Query: 696 NLPPSLKSLGVFECSKL-ESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEI 754
++ L + E + +LE++ + + L QL+ + I
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349
Query: 755 WNCGNLVSFPEGGLP------------CAKLMRLEIYGC----ERLEALPKGLHNLTSLQ 798
+ + C +L + +Y E LE++ L NL +
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
Query: 799 ELRIGRGVELPSLEEEDGLP------TNLQSLDIWGN 829
+ + R + L ++G+ L+ +
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 72/543 (13%), Positives = 150/543 (27%), Gaps = 101/543 (18%)
Query: 111 LRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTD 170
LR L+ ++ + L +L L +L+ L KL + TD
Sbjct: 111 LRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETL--------KLDKCSGFTTD 154
Query: 171 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSEL----KLLMHLRGALEISKLENVKDVG 226
L + K+ L + + G L EL L L +++ +
Sbjct: 155 GLLSIVTHCRKIKTL-LMEESSFSEKDGKWLHELAQHNTSLEVLN--FYMTEFAKISPKD 211
Query: 227 NAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMK 286
AR ++L + + + K NLE+FC
Sbjct: 212 LETIAR--NCRSLVSVKVGDFEILELVG------------FFKAAANLEEFCGGSLNEDI 257
Query: 287 FPT--WLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGND 344
++ L L G ++ L +
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK- 316
Query: 345 PPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPAL 404
P LE L N+ I + + + +L+ L I R + +G E
Sbjct: 317 ----CPNLEVLETRNV------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG--- 363
Query: 405 EMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVG 464
++ G L+ L + + + S +
Sbjct: 364 -LVSQRGLIALA---QGCQELEYMAVYVSD------------------ITNES-----LE 396
Query: 465 PLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQ 524
+ L L + ++ + + I + L + SL + C KL+ +
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERI--TDLPLDNGVRSL----LIGCKKLRRFAFYLRQGGL 450
Query: 525 -----QQLCELSCRLEYLTLSGCQ----GLVKLPQSSLSLSSLREIVIYKCS-SLVSFPE 574
+ + S + ++ L GL++ S +L+++ + C S +
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAA 507
Query: 575 VALP-SKLKKINIWHCDA-LKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQ 632
L+ + + A + M ++E++ + G ++
Sbjct: 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAH 567
Query: 633 LDI 635
+
Sbjct: 568 ILA 570
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 28/246 (11%)
Query: 696 NLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSCGNLKILPSG-LHNLCQLQEIE 753
+P + L + + +++++ + + LE + + + + G +NL L+ +
Sbjct: 29 GIPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLG 86
Query: 754 IWNCGNLVSFPEG---GLPCAKLMRLEIYGCERLEALPKGL-HNLTSLQELRIGRGVELP 809
+ + L P G GL L +L+I ++ L + +L +L+ L +G +L
Sbjct: 87 LRSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLV 141
Query: 810 SLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS---F 864
+ GL +L+ L + + + I L L +R + + + F
Sbjct: 142 YISHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-ALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 865 PLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK---KGLPSSLLRLW 921
L LEIS +P L+ ++ + + LT L + HC L P + L L L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLV-YLRFLN 254
Query: 922 IEGCPL 927
+ P+
Sbjct: 255 LSYNPI 260
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 4/130 (3%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHT 139
+ +L+ L + + + +++L + + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 140 LLLED----CRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 195
L C L+ + + + E + L C +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 196 DSGSGLSELK 205
L L
Sbjct: 302 PFADRLIALG 311
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 52/281 (18%)
Query: 714 SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL-PCAK 772
+I E N +I + + L S + ++E+++ L L P K
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59
Query: 773 LMRLEIYGCERLEALPKGLHNLTSLQEL-----RIGRGVELPSLEE-----------EDG 816
L L + L L +L++L+ L + + PS+E
Sbjct: 60 LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117
Query: 817 LPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-LPASLTSLEI 875
+++ + N +I +M+ S ++ L+++ + D V+F L AS +LE
Sbjct: 118 RGQGKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 876 --------------SFFPNLERL----------SSSIVDLQILTELRLYHCRKLKYFPKK 911
F L+ L +T + L + KL K
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232
Query: 912 -GLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQI 951
+L + G +D + + + +
Sbjct: 233 LRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 85 LFKLQRLRAFSLRGYHI--FELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLL 142
R++ L+ I + L +LNL I + V L TL L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198
Query: 143 EDCRELKKLCADMGNLIKLHH---HNNSNTDSLEEMPLGIGKLTCLQTL 188
+ L + + + + NN L + + L+
Sbjct: 199 SSNK-LAFMGPEFQSAAGVTWISLRNN----KLVLIEKALRFSQNLEHF 242
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 39/300 (13%), Positives = 101/300 (33%), Gaps = 66/300 (22%)
Query: 533 RLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWHC 589
R + ++ L + S +++E+ + L L +KL+ +N+
Sbjct: 11 RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEG 649
L + ++ S+L L +++ + + S++ L + +NI ++ G
Sbjct: 69 -VLYETLDL---ESLSTLRTLDLNNNY-VQELLV---GPSIETLH-AANNNISRVSCSRG 119
Query: 650 IQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709
+++++ + N++ L L+ G ++ L
Sbjct: 120 -------------QGKKNIYL----------ANNKI-TMLRDLDEGCRS-RVQYL----- 149
Query: 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769
L N ++ ++ + L+ + + + +
Sbjct: 150 --------DLKLN-EIDTVNFAEL---------AASSDTLEHLNLQYN-FIYDVKGQ-VV 189
Query: 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829
AKL L++ +L + + + + + R +L +E+ NL+ D+ GN
Sbjct: 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGN 247
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 62/360 (17%), Positives = 126/360 (35%), Gaps = 73/360 (20%)
Query: 579 SKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSC 638
++ K + + ++ + + + L + GV+ +L Q++ S
Sbjct: 24 AEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRL-GIKSIDGVEYLNNLTQIN-FSN 77
Query: 639 DNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCI-FSKNELPATLESLEVGNL 697
+ + +T +++ L I + N++ A + L NL
Sbjct: 78 NQLTDIT-----------------------PLKNLTKLVDILMNNNQI-ADITPL--ANL 111
Query: 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNC 757
+L L +F ++ I + L N T+L + + S I S + L L ++ +
Sbjct: 112 T-NLTGLTLFNN-QITDI-DPLKNLTNLNRLELSSN---TI--SDISALSGLTSLQQLSF 163
Query: 758 GNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGL 817
GN V+ + L RL+I ++ + L LT+L+ L ++ + L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNN-QISDITPLGIL 220
Query: 818 PTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE-IS 876
TNL L + GN ++ ++L L++ +++L +S
Sbjct: 221 -TNLDELSLNGN------QLKDIGTLASLTNLTDLDLANN-----------QISNLAPLS 262
Query: 877 FFPNLERLS---------SSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPL 927
L L S + L LT L L +L+ +L L + +
Sbjct: 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 63/376 (16%), Positives = 133/376 (35%), Gaps = 63/376 (16%)
Query: 534 LEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHC---- 589
L + S Q L + +L+ L +I++ + +A + L + +++
Sbjct: 70 LTQINFSNNQ-LTDITPLK-NLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITD 126
Query: 590 -DALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLD----ILSCDNIRTL 644
D LK+L ++L L +SS ++ + SL+QL + + L
Sbjct: 127 IDPLKNL---------TNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 645 TVEEGIQCSSSSSRRYTS----SLLEHLHIESCLSLTCIFSKNELPATLESLEVGN---- 696
T E + SS+ + + LE L + ++ I L L+ L +
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITPLGILTN-LDELSLNGNQLK 234
Query: 697 -LPP--SLKSLGVFECS--KLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQE 751
+ SL +L + + ++ ++A L T L + +G+ + + L L L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNIS-PLAGLTALTN 291
Query: 752 IEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSL 811
+E+ N + L L +Y + + + +LT LQ L ++ +
Sbjct: 292 LELNE--NQLEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFF-YNNKVSDV 346
Query: 812 EEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLT 871
L TN+ L N I + + +L + + T
Sbjct: 347 SSLANL-TNINWLSAGHN------QISDLTPLANLTRITQLGLNDQ-----------AWT 388
Query: 872 SLEISFFPNLERLSSS 887
+ +++ N+ ++
Sbjct: 389 NAPVNYKANVSIPNTV 404
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 37/253 (14%), Positives = 81/253 (32%), Gaps = 7/253 (2%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138
I+ F +QRL + + L + L+ L+LS H+ + + + L
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327
Query: 139 TLLLEDCRELKKLCAD-MGNLIKLH-HHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD 196
L L+ + L L L HN+ + +SL + + + + +
Sbjct: 328 NLYLDHNS-IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 386
Query: 197 SGSGLSELKLLMHLRG-ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSS 255
GL + L+ L +V + + R + + T
Sbjct: 387 LEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGV 446
Query: 256 REAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPS 315
E ++ + ++Q + + + L +NL + G+ + +
Sbjct: 447 PLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN 506
Query: 316 MGQLPSLKHLTVR 328
+ ++ HL R
Sbjct: 507 LNKV--FTHLKER 517
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 45/271 (16%)
Query: 670 IESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIIS 729
CI S + + + + E I L+N +
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFG-------FEDI--TLNNQKIVTF-- 58
Query: 730 IGSCGNLKILPSG-LHNLCQLQEIEIWNCGNLVSFPEGGL-PCAKLMRLEIYGCERLEAL 787
++ LP+ L + Q++ + + + + + +L + + L
Sbjct: 59 --KNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYL 114
Query: 788 PKGL-HNLTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFH 844
P + N+ L L + +L SL P L +L + N + IE F
Sbjct: 115 PPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTP-KLTTLSMSNN-NL--ERIEDD-TFQ 168
Query: 845 GFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLS------SSIVDLQILTELR 898
+SL+ L++ LT +++S P+L + S++ + EL
Sbjct: 169 ATTSLQNLQLSSN-----------RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 899 LYHCRKLKYFPKKGLPSSLLRLWIEGCPLIE 929
H + + L L ++ L +
Sbjct: 218 ASHNS-INVVR-GPVNVELTILKLQHNNLTD 246
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 57/293 (19%), Positives = 103/293 (35%), Gaps = 53/293 (18%)
Query: 675 SLTCIFSKNELPATLESLEVGN-----LPP-------SLKSLGVFECSKLESIAERL-DN 721
SL I S L ++SL++ N + +L++L + + +I E +
Sbjct: 42 SLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS 98
Query: 722 NTSLEIISIGSCGNLKILPSGL-HNLCQLQEIEIWNCGNLVSFPEGGL--PCAKLMRLEI 778
SLE + + L L S L L + + + E L KL L +
Sbjct: 99 LGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV 156
Query: 779 YGCERLEALPKG-LHNLTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKS 835
+ + + LT L+EL I +L S E + + N+ L + +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSI-QNVSHLILHMK-QH--I 211
Query: 836 MIERGRGFHGFSSLRRLEIRG-----------CDDDMVSFPLPASLTSLEISFFPNLERL 884
++ SS+ LE+R + S + +++I+ L ++
Sbjct: 212 LLLEI-FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQV 269
Query: 885 SSSIVDLQILTELRLYHCRKLKYFPK---KGLPSSLLRLWIEG------CPLI 928
+ + L EL + LK P L SL ++W+ CP I
Sbjct: 270 MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPRI 320
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 49/207 (23%)
Query: 26 VNKQQSFSENLRH--LSYIP-EYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAY--- 79
+N S S+N + +S +Y ++E R L +
Sbjct: 7 INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66
Query: 80 -----SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL-----------------RYL 117
S LP ++ + + LP+ L YL ++L
Sbjct: 67 NRLNLSSLPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL 125
Query: 118 NLSGTHIRALPESVNKLYNLH------TLLLEDCRELKKLCAD----------MGNLIKL 161
++ + LPE L ++ T+L E L+ L +L L
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEAL 185
Query: 162 HHHNNSNTDSLEEMPLGIGKLTCLQTL 188
N LE +P + +
Sbjct: 186 DVSTN----LLESLPAVPVRNHHSEET 208
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 57/351 (16%), Positives = 112/351 (31%), Gaps = 71/351 (20%)
Query: 569 LVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPR 628
VS + L ++ ++ + + L SLP+ + + +L I+ L LP
Sbjct: 49 AVSLLKECLINQFSELQLNRLN-LSSLPD----NLPPQITVLEITQNA-LI-----SLPE 97
Query: 629 SLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688
L+ L + R T+ E L+HL +++ LT + ELPA
Sbjct: 98 LPASLEYLDACDNRLSTLPELPAS------------LKHLDVDNN-QLTML---PELPAL 141
Query: 689 LESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQ 748
LE + N ++L + E TSLE++S+ + L LP +L
Sbjct: 142 LEYINADN-------------NQLTMLPELP---TSLEVLSVRNN-QLTFLPELPESLEA 184
Query: 749 LQEIEIWNCGN--LVSFPEGGLPCAKLMRLEIY---GCERLEALPKGLHNLTSLQELRIG 803
L + L S P + EI+ R+ +P+ + +L + +
Sbjct: 185 L------DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238
Query: 804 R-------GVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856
L + + + F ++ ++
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298
Query: 857 CDDDMVSFPLPASLTS----LEISFFPNL-----ERLSSSIVDLQILTELR 898
+ ++ L + E++++ + L ELR
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELR 349
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 20/114 (17%)
Query: 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLL 141
LP+L L + + LP+ L L++ + LPE +L L
Sbjct: 135 LPEL--PALLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLPEL---PESLEALD 186
Query: 142 LEDCRELKKLCADMGNLIKLHH-------HNNSNTDSLEEMPLGIGKLTCLQTL 188
+ L+ L A N + +P I L T+
Sbjct: 187 VSTNL-LESLPAVPVRNHHSEETEIFFRCREN----RITHIPENILSLDPTCTI 235
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 47/257 (18%), Positives = 87/257 (33%), Gaps = 48/257 (18%)
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEV-GNLPPSLKSLGVFECSKLESIAERLDNNT 723
++ S+T + ++ EL ++ L V G S++ + + LE + L+ N
Sbjct: 24 GIRAVLQKA-SVTDVVTQEELE-SITKLVVAGEKVASIQGIE--YLTNLEYL--NLNGNQ 77
Query: 724 SLEIISIGSCGNLKIL---------PSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLM 774
+I + + L L S L NL L+E+ + + +S K+
Sbjct: 78 ITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE--DNISDISPLANLTKMY 135
Query: 775 RLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWK 834
L + + L N+T L L + ++ + L T+L SL + N
Sbjct: 136 SLNLGAN-HNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANL-TDLYSLSLNYN----- 187
Query: 835 SMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE-ISFFPNLERLS-------- 885
IE +SL +T + ++ L L
Sbjct: 188 -QIEDISPLASLTSLHYFTAYVN-----------QITDITPVANMTRLNSLKIGNNKITD 235
Query: 886 -SSIVDLQILTELRLYH 901
S + +L LT L +
Sbjct: 236 LSPLANLSQLTWLEIGT 252
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHT 139
S + L L ++ + +L H + ++ L YL ++ + ++ + + L +L++
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181
Query: 140 LLLEDCR--ELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL---CNFVVG 194
L L + ++ L A + +L + N TD + +T L +L N +
Sbjct: 182 LSLNYNQIEDISPL-ASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNKITD 235
Query: 195 KDSGSGLSELKLL 207
+ LS+L L
Sbjct: 236 LSPLANLSQLTWL 248
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 52/367 (14%), Positives = 129/367 (35%), Gaps = 71/367 (19%)
Query: 469 QLPKLEELEIIDMKEQTYIWKSHNGL-----LQDISSLKRLTIASCPKLQSLVAEEEKDQ 523
+L + +L + + + ++ +++L+ L + ++ +
Sbjct: 42 ELESITKLVV-----------AGEKVASIQGIEYLTNLEYLNLNGN-QITDISP------ 83
Query: 524 QQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKK 583
L L +L L + + + + +L++LRE+ + + + + +A +K+
Sbjct: 84 ---LSNLV-KLTNLYIGTNK-ITDISALQ-NLTNLRELYLNEDN-ISDISPLANLTKMYS 136
Query: 584 INIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRT 643
+N+ L L + L LT++ + + L L L+ + I
Sbjct: 137 LNLGANHNLSDLSPL---SNMTGLNYLTVTESK-VKDVTPIANLTDLYSLS-LNYNQIED 191
Query: 644 LTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIF-SKNELPATLESLEVGNLPPSLK 702
++ + S SL N++ + + N+ L
Sbjct: 192 IS-----------------------PLASLTSLHYFTAYVNQI-TDITPV--ANMT-RLN 224
Query: 703 SLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS 762
SL + K+ ++ L N + L + IG+ I + + +L +L+ + + + N +S
Sbjct: 225 SLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGS--NQIS 278
Query: 763 FPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQ 822
++L L + + + + LT+L L + + + L + +
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL-SQNHITDIRPLASL-SKMD 336
Query: 823 SLDIWGN 829
S D
Sbjct: 337 SADFANQ 343
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 87/533 (16%), Positives = 158/533 (29%), Gaps = 108/533 (20%)
Query: 498 ISSLKRLTIASCPKLQSLVAEE---EKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS 554
+ L +L SL K + + +L L+ L L + L +L + +
Sbjct: 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNE-LSQLSDKTFA 94
Query: 555 -LSSLREIVIYKCSSLVSFPEVAL--PSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611
++L E+ + S+ L +++ H L S +L+ L
Sbjct: 95 FCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGT-QVQLENLQELL 151
Query: 612 ISSCHSLTY-----FGGVQLPRSLKQLD-------------ILSCDNIRTLTVEE-GIQC 652
+S+ + SLK+L+ + + L + +
Sbjct: 152 LSNNK-IQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209
Query: 653 SSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSL-------- 704
S + L + I + LSL S ++L T + +G +L L
Sbjct: 210 SLTEK---LCLELANTSIRN-LSL----SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 705 ----GVFE-CSKLESIAERLDNN--TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNC 757
F +LE L+ N L S+ N++ L L Q I + +
Sbjct: 262 VVGNDSFAWLPQLEYF--FLEYNNIQHLFSHSLHGLFNVRYL--NLKRSFTKQSISLASL 317
Query: 758 GNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR----GVELPSLEE 813
+ F L L L + + L +L+ L + L +
Sbjct: 318 PKIDDFSFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 814 EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPAS---- 869
+ L L++ N +I S IE F L L++ + L
Sbjct: 376 VSLAHSPLHILNLTKN-KI--SKIESD-AFSWLGHLEVLDLGLN---EIGQELTGQEWRG 428
Query: 870 LTSLE----------------ISFFPNLERLS-------------SSIVDLQILTELRLY 900
L ++ + P+L+RL S L+ LT L L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 901 HCRKLKYFPKKGLPS--SLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQI 951
+ + L L L ++ L + G L + + I
Sbjct: 489 NNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 74/492 (15%), Positives = 153/492 (31%), Gaps = 72/492 (14%)
Query: 469 QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528
L++LE+ I + G I L L + + +L + E+ +
Sbjct: 169 ANSSLKKLEL----SSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANT- 222
Query: 529 ELSCRLEYLTLSGCQGLVKLPQSS---LSLSSLREIVIYKCSSLVSFPEVALP--SKLKK 583
+ L+LS Q L ++ L ++L + + + L + +L+
Sbjct: 223 ----SIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEY 276
Query: 584 INIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRT 643
+ + + ++ L + ++ L + + LP + +
Sbjct: 277 FFLEYNN-IQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEH 333
Query: 644 LTVEE-GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLK 702
L +E+ I S+ +L ++L LS + + T SL L
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINL-KYLS----LSNSFTSLRTLTNETFVSLA----HSPLH 384
Query: 703 SLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSG-LHNLCQLQEIEIWNCGNLV 761
L + + + ++ LE++ +G + L L + EI + +
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYL 443
Query: 762 SFPEGGL-PCAKLMRLEIYGC--ERLEALPKGLHNLTSLQELRIGRGVELPSLEEE--DG 816
L RL + + +++ P L +L L + + ++ ++ +G
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL-SNNNIANINDDMLEG 502
Query: 817 LPTNLQSLDIWGN--IEIWKSMIERG--RGFHGFSSLRRLEIRGCDDDMVSFPLPASLTS 872
L L+ LD+ N +WK G G S L L +
Sbjct: 503 LE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-----------GFDE 550
Query: 873 LEISFFPNLERL--------------SSSIVDLQILTELRLYHCRKLKYFPK---KGLPS 915
+ + F +L L +S + L L L + K
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFR 609
Query: 916 SLLRLWIEGCPL 927
+L L + P
Sbjct: 610 NLTELDMRFNPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 96/655 (14%), Positives = 179/655 (27%), Gaps = 144/655 (21%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPE---SVNKL 134
I F + L L + + L L+ L LS I+AL +
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 135 YNLHTLLLEDCRELKKLC----ADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL-- 188
+L L L + +K+ +G L L +N SL E T ++ L
Sbjct: 171 SSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 189 --CNF-VVGKDSGSGLSELKLLM-HLRG-------ALEISKLENVK--DVGNAKEARLD- 234
+ GL L M L + L ++ + L
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 235 ----GKKNLKEL-LLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPT 289
G N++ L L R S + + + L LE + E
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNM---EDNDI-P 342
Query: 290 WLGDSSFSNLVTLKF----KNCGMCTALPSMG----QLPSLKHLTVRGMSRVKRLGSEFY 341
+ + F+ L+ LK+ + L + L L + ++ ++ S+ +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAF 401
Query: 342 GNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFP--- 398
LE L I + G + E++ L +K
Sbjct: 402 SW-----LGHLEVLDLGLNE-----IGQELTGQEWRGLENIFEIY-LSYNKYLQLTRNSF 450
Query: 399 EHLPALEMLV-----IEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVC 453
+P+L+ L+ ++ + L L L +
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN------------------- 491
Query: 454 RDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQ 513
+ L LE+LEI+D+ HN L
Sbjct: 492 --------IANINDDMLEGLEKLEILDL--------QHN------------------NLA 517
Query: 514 SLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSF 572
L + L L L ++P L L+ I + +L +
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTL 575
Query: 573 PEVALP--SKLKKINIWHCDALKSLPEAWMCDTNSSLEILTIS------SCHSLTYFGGV 624
P LK +N+ + + S+ + +L L + +C S+ +F
Sbjct: 576 PASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--- 631
Query: 625 QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCI 679
++ ++ + + C++ + SC
Sbjct: 632 --------VNWINETHTNIPELSSHYLCNTPPHYHGFP--VRLFDTSSCKDSAHH 676
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 58/388 (14%), Positives = 124/388 (31%), Gaps = 66/388 (17%)
Query: 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWH 588
+ E S L ++P + ++ + + L P S+L +++
Sbjct: 3 TVSHEVADCSHL-KLTQVPDDLPT--NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGF 58
Query: 589 CDALKSLPEAWMCDTNSSLEILTISSCHSLTYF--GGVQLPRSLKQLDILSCDNIRTLTV 646
K PE C L++L + L+ +L +L L ++I+ +
Sbjct: 59 NTISKLEPEL--CQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELH-LMSNSIQKI-- 112
Query: 647 EEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGV 706
+ + L L + S N L ++ + L +L+ L +
Sbjct: 113 KNNPFVKQKN--------LITLDL----------SHNGL-SSTKLGTQVQLE-NLQELLL 152
Query: 707 FEC--SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP 764
L+S + N+SL+ + + S + P H + +L + + N S
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 765 EGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE--DGLP-TNL 821
E TS++ L + +L + GL TNL
Sbjct: 213 EK---------------------LCLELANTSIRNLSL-SNSQLSTTSNTTFLGLKWTNL 250
Query: 822 QSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEI-SFFPN 880
LD+ N + +++ F L + + + L ++ + +
Sbjct: 251 TMLDLSYN-NL--NVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 881 LERLSSSIVDLQILTELRLYHCRKLKYF 908
+ S S+ L + + + L++
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHL 334
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 70/532 (13%), Positives = 143/532 (26%), Gaps = 103/532 (19%)
Query: 470 LPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 529
+L+ L++ + I + + L L + +QS
Sbjct: 55 FSELQWLDL----SRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPG-------SFSG 102
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKC--SSLVSFPEVALPSKLKKINI 586
L+ LE L + L L + L +L+++ + S + + L +++
Sbjct: 103 LT-SLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 587 WHCDALKSLPE---AWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRT 643
+ ++++ ++ + L +S L +L + N
Sbjct: 161 SYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219
Query: 644 LTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKS 703
+ + R + + + ++ T++ +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDD 277
Query: 704 LGVFEC-SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLV- 761
+ F C + + ++ L + + + + L CQL++ + L
Sbjct: 278 IVKFHCLANVSAM--SLAGVSIKYLEDVPKHFKWQSL---SIIRCQLKQFPTLDLPFLKS 332
Query: 762 --------SFPEGGLPCAKLMRLEIYGCE-------------------------RLEALP 788
S + L L++ +
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392
Query: 789 KGLHNLTSLQELRIG--RGVELPSLEEEDGLPTNLQSLDIWGN-IEIWKSMIERGRGFHG 845
L LQ L + L L LDI +I I F G
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGI-----FLG 446
Query: 846 FSSLRRLEIRGC----DDDMVSFPLPASLTSLEISF----------FPNLERL------- 884
+SL L++ G + F +LT L++S F L RL
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 885 -------SSSIVDLQILTELRLYHCRKLKYFPKK--GLPSSLLRLWIEGCPL 927
SS L L+ L R ++ P SL + +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 44/318 (13%), Positives = 91/318 (28%), Gaps = 42/318 (13%)
Query: 625 QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684
+P S K +D LS + ++ L S S ++ L+ L + C + I
Sbjct: 29 DIPSSTKNID-LSFNPLKIL--------KSYSFSNFSE--LQWLDLSRC-EIETIE---- 72
Query: 685 LPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLH 744
L L +L + TSLE + + +
Sbjct: 73 -DKAWHGL------HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125
Query: 745 NLCQLQEIEIWNCGNLVSFPEGGL--PCAKLMRLEIYGCERLEALPK----GLHNLT-SL 797
L L+++ + + + S L+ +++ ++ + L
Sbjct: 126 QLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVN 183
Query: 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857
L + + ++++ L L + GN M + G R +
Sbjct: 184 LSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242
Query: 858 DDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQI--------LTELRLYHCRKLKYFP 909
D+ + P+ + L ++ I ++ + L +KY
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLE 301
Query: 910 KKGLPSSLLRLWIEGCPL 927
L I C L
Sbjct: 302 DVPKHFKWQSLSIIRCQL 319
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 84/617 (13%), Positives = 181/617 (29%), Gaps = 114/617 (18%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPESV-NKLYN 136
+ F L+ L I + + L +L L L+G I++ + L +
Sbjct: 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105
Query: 137 LHTLLLEDC--RELKKLC-ADMGNLIKLHHHNNSNTDSLEEMPLG--IGKLTCLQTL--- 188
L L+ + L+ + L KL+ +N + L LT L +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHN----FIHSCKLPAYFSNLTNLVHVDLS 161
Query: 189 CNFVVGKDSGSGLSELKLLMHLRGALEIS--KLENVKDVGNAKEARLDGKKNLKELLLRW 246
N++ L L+ + +L++S ++ + + + L EL LR
Sbjct: 162 YNYIQTITVND-LQFLRENPQVNLSLDMSLNPIDFI-------QDQAFQGIKLHELTLRG 213
Query: 247 TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKN 306
++ + + + L + + ++ + S L +
Sbjct: 214 NFNS-SNIMKTCLQNLAGLHVHRLILGE-------FKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 307 CGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGN-----DPPIPFPCLETLLFENMR 361
+ + S + ++ V + G + ++L +
Sbjct: 266 FRL-----TYTNDFSDDIVKFHCLANVSAM--SLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318
Query: 362 EWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPE-HLPALEML-----VIEGCEEL 415
+ + P L+ L L +K +F + LP+L L +
Sbjct: 319 -----LKQFPTL----DLPFLKSLT-LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368
Query: 416 SVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKP--QLPKL 473
S S +L L + ++ + L + + + + V L KL
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH--STLKRVTEFSAFLSLEKL 426
Query: 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCR 533
L+I T +G+ ++SL L +A + ++ +
Sbjct: 427 LYLDISY----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------FANTT-N 474
Query: 534 LEYLTLSGCQGLVKLPQSSLS-LSSLREI-------------VIYKCSSLV--------- 570
L +L LS CQ L ++ L L+ + + SL
Sbjct: 475 LTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 571 -SFPEVALP--SKLKKINI----WHCD-ALKSLPEAWMCDTNSSLEILTISSCHSLTYFG 622
+ + L N+ C + + W+ + L + +C +
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ-WVKEQKQFLVNVEQMTCATPVEMN 592
Query: 623 GVQLPRSLKQLDILSCD 639
+ + +C
Sbjct: 593 T----SLVLDFNNSTCY 605
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 57/388 (14%), Positives = 115/388 (29%), Gaps = 76/388 (19%)
Query: 534 LEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWHCD 590
+ + LS L L S S S L+ + + +C + + + A L + +
Sbjct: 34 TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91
Query: 591 ALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP--RSLKQLDILSCDNIRTLTVEE 648
++S +SLE L L + +LK+L+ ++ + I + +
Sbjct: 92 -IQSFSPGSFSG-LTSLENLVAVETK-LASLESFPIGQLITLKKLN-VAHNFIHSCKLPA 147
Query: 649 GIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFE 708
++ L H+ + + I L+ L P SL +
Sbjct: 148 YFSNLTN---------LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSL 190
Query: 709 CSKLESIAERLDNNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767
++ I ++ L +++ N I+ + L NL L +
Sbjct: 191 N-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIW 827
++ +GL ++ ++ E R+ + + N+ ++ +
Sbjct: 250 FE---------------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 828 GNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSS 887
G I+ + L I C L P L+
Sbjct: 294 GV------SIKYLEDVPKHFKWQSLSIIRC-----------QLKQFPTLDLPFLK----- 331
Query: 888 IVDLQILTELRLYHCRKLKYFPKKGLPS 915
L L + F K LPS
Sbjct: 332 --------SLTLTMNKGSISFKKVALPS 351
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 8/138 (5%)
Query: 52 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGD 110
++L + R L + SI+ L + F L + F
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHC 283
Query: 111 LRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTD 170
L + ++L+G I+ L + + +L + C+ + D+ L L N +
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342
Query: 171 SLEEMPLGIGKLTCLQTL 188
L L L
Sbjct: 343 -----SFKKVALPSLSYL 355
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 53/268 (19%)
Query: 626 LPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNEL 685
+P + + L+ L +NI+ + + + R LE L + + I
Sbjct: 73 IPSNTRYLN-LMENNIQMI--------QADTFRHLHH--LEVLQLGRNS-IRQI-----E 115
Query: 686 PATLESLEVGNLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSCGNLKILPSG-L 743
L SL +L +F+ L I + + L + + + ++ +PS
Sbjct: 116 VGAFNGL------ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAF 167
Query: 744 HNLCQLQEIEIWNCGNLVSFPEG---GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQEL 800
+ + L +++ L EG GL L L + C ++ +P L L L+EL
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLF--NLKYLNLGMC-NIKDMPN-LTPLVGLEEL 223
Query: 801 RIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858
+ P + GL +L+ L + + ++ S+IER F G +SL L +
Sbjct: 224 EMSGN-HFPEIRPGSFHGLS-SLKKLWVMNS-QV--SLIERN-AFDGLASLVELNLAHN- 276
Query: 859 DDMVSFPLPASLTSLEISFFPNLERLSS 886
+L+SL F L L
Sbjct: 277 ----------NLSSLPHDLFTPLRYLVE 294
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 38 HLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSR-GHLAYSILPKLFKLQRLRAFSL 96
+ IP Y F + + L L + +++ LF L+ L +L
Sbjct: 158 PIESIPSYA-----FNRVPSLMRLD------LGELKKLEYISEGAFEGLFNLKYL---NL 203
Query: 97 RGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCRELKKLC--- 152
+I ++P+ + L L L +SG H + + L +L L + + + + +
Sbjct: 204 GMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNA 261
Query: 153 -ADMGNLIKLHHHNNSNTDSLEEMPLGI-GKLTCLQTL 188
+ +L++L+ +N +L +P + L L L
Sbjct: 262 FDGLASLVELNLAHN----NLSSLPHDLFTPLRYLVEL 295
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 6e-06
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 34 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRA 93
+R L + + ++ F L + +R + R + +R
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMR----AAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 94 FSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKL-- 151
L + L + L + +L+LS +RALP ++ L L L D L+ +
Sbjct: 446 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG 503
Query: 152 CADMGNLIKLHHHNN--SNTDSLEEMPLGIGKLTCLQTL 188
A++ L +L NN + +++ + L L
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLL 538
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 36/237 (15%), Positives = 84/237 (35%), Gaps = 39/237 (16%)
Query: 601 CDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRY 660
C + +C + LP S + L L ++RT+ S +
Sbjct: 10 CHQEEDFRV----TCKDIQRIPS--LPPSTQTLK-LIETHLRTI--------PSHAFSNL 54
Query: 661 TSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAER-L 719
+ + +++ ++L + + +L + + + L I L
Sbjct: 55 PN--ISRIYVSIDVTLQQLE-----SHSFYNL------SKVTHIEIRNTRNLTYIDPDAL 101
Query: 720 DNNTSLEIISIGSCGNLKILP--SGLHNLCQLQEIEIWNCGNLVSFPEG---GLPCAKLM 774
L+ + I + G LK+ P + +++ +EI + + S P GL + +
Sbjct: 102 KELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETL 159
Query: 775 RLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGN 829
L++Y ++ N T L + + + L ++++ G+ + LD+
Sbjct: 160 TLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 53/268 (19%)
Query: 626 LPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNEL 685
+ + + L+ L + I+ + +S + LE L + + I
Sbjct: 62 ISTNTRLLN-LHENQIQII--------KVNSFKHLRH--LEILQLSRNH-IRTI-----E 104
Query: 686 PATLESLEVGNLPPSLKSLGVFECSKLESIAER-LDNNTSLEIISIGSCGNLKILPSGL- 743
L +L +L +F+ +L +I + L+ + + + ++ +PS
Sbjct: 105 IGAFNGL------ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAF 156
Query: 744 HNLCQLQEIEIWNCGNLVSFPEG---GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQEL 800
+ + L+ +++ L EG GL L L + C L +P L L L EL
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLS--NLRYLNLAMC-NLREIP-NLTPLIKLDEL 212
Query: 801 RIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858
+ L ++ GL +LQ L + + +I +IER F SL + +
Sbjct: 213 DLSGN-HLSAIRPGSFQGLM-HLQKLWMIQS-QI--QVIERN-AFDNLQSLVEINLAHN- 265
Query: 859 DDMVSFPLPASLTSLEISFFPNLERLSS 886
+LT L F L L
Sbjct: 266 ----------NLTLLPHDLFTPLHHLER 283
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 23/263 (8%)
Query: 652 CSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSK 711
C S + + ++ + + L L L++L +
Sbjct: 77 CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC------SKLQNLSLEGLRL 130
Query: 712 LESIAERLDNNTSLEIISIGSCGNL--KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL- 768
+ I L N++L +++ C L + L + +L E+ + C +
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190
Query: 769 --PCAKLMRLEIYGCERL---EALPKGLHNLTSLQELRIGRGVEL--PSLEEEDGLPTNL 821
+ +L + G + L + +L L + V L +E L L
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YL 249
Query: 822 QSLDIWGNIEI-WKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPN 880
Q L + +I ++++E G +L+ L++ G D L +L L+I+ +
Sbjct: 250 QHLSLSRCYDIIPETLLELGEI----PTLKTLQVFGIVPDGTLQLLKEALPHLQIN-CSH 304
Query: 881 LERLSSSIVDLQILTELRLYHCR 903
++ + + E+ CR
Sbjct: 305 FTTIARPTIGNKKNQEIWGIKCR 327
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 48/219 (21%), Positives = 80/219 (36%), Gaps = 43/219 (19%)
Query: 737 KILPSGLHNLCQLQEIEIWNCGNLVSFPEG---GLPCAKLMRLEIYGCERLEALPKGLHN 793
+I NL L + + N + G L KL RL + +L+ LP+ +
Sbjct: 66 EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLV--KLERLYLSKN-QLKELPEKM-- 119
Query: 794 LTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851
+LQELR+ E+ + + +GL + +++ N + S IE G F G L
Sbjct: 120 PKTLQELRVHEN-EITKVRKSVFNGLN-QMIVVELGTN-PLKSSGIENG-AFQGMKKLSY 175
Query: 852 LEIRGCDDDMVSFPLPASLTSLEISF-------------FPNLERLS-----------SS 887
+ I + + LP SLT L + NL +L S
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 888 IVDLQILTELRLYHCRKLKYFPK--KGLPSSLLRLWIEG 924
+ + L EL L + KL P + +++
Sbjct: 236 LANTPHLRELHLNNN-KLVKVPGGLADHK-YIQVVYLHN 272
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 33/218 (15%)
Query: 723 TSLEIISIGSCGNLKILPSG-LHNLCQLQEIEIWNCGNLVSFPEGGL-PCAKLMRLEIYG 780
+ +I++ + ++ LP+ L + Q++ + + + + + +L +
Sbjct: 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF 102
Query: 781 CERLEALPKG-LHNLTSLQELRIGRGVELPSLEEE--DGLPTNLQSLDIWGNIEIWKSMI 837
+ LP N+ L L + R +L SL P L +L + N + I
Sbjct: 103 N-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP-KLTTLSMSNN-NL--ERI 156
Query: 838 ERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLS------SSIVDL 891
E F +SL+ L++ LT +++S P+L + S++
Sbjct: 157 EDD-TFQATTSLQNLQLSSN-----------RLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 892 QILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLIE 929
+ EL H + L L ++ L +
Sbjct: 205 IAVEELDASHNS-INVVRGPVN-VELTILKLQHNNLTD 240
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 80 SILPKLFK-LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138
I+ F +QRL + + L + L+ L+LS H+ + + + L
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321
Query: 139 TLLLEDCRELKKLCAD-MGNLIKLH-HHNNSNTDSLEEMPLGIGKLT 183
L L+ + L L L HN+ + +SL + + +
Sbjct: 322 NLYLDHNS-IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 60/401 (14%), Positives = 132/401 (32%), Gaps = 79/401 (19%)
Query: 533 RLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIYKCSSLVSFPEVALP--SKLKKINIWHC 589
+ +T + KLP + L + + + + A ++K+ +
Sbjct: 46 NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103
Query: 590 DALKSLPEAWMCDTNSSLEILTISSCH--SLTYFGGVQLPRSLKQLDILSCDNIRTLTVE 647
A++ LP + L +L + SL P L L +S +N+ + +
Sbjct: 104 -AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTP-KLTTLS-MSNNNLERIEDD 159
Query: 648 EGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707
+S L++L + S N L +++ +P SL V
Sbjct: 160 TFQATTS----------LQNLQL----------SSNRL----THVDLSLIP-SLFHANV- 193
Query: 708 ECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767
+ L + L ++E + ++ ++ + +L +++ + N ++
Sbjct: 194 SYNLLST----LAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQH--NNLTDTAWL 244
Query: 768 LPCAKLMRLEIYGCERLEALPKG-LHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDI 826
L L+ +++ LE + + L+ L I L +L L+ LD+
Sbjct: 245 LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYI-SNNRLVALNLYGQPIPTLKVLDL 302
Query: 827 WGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS 886
N + +ER F L L + S+ +L++S L+ L+
Sbjct: 303 SHN-HL--LHVERN--QPQFDRLENLYLDHN-----------SIVTLKLSTHHTLKNLT- 345
Query: 887 SIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPL 927
L+ + L ++ R ++
Sbjct: 346 -------LSHND------WDCNSLRALFRNVARPAVDDADQ 373
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 79/503 (15%), Positives = 160/503 (31%), Gaps = 78/503 (15%)
Query: 105 PDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLHTLLLEDCRELKKL-CADMGNLIKLH 162
I L LR L LS IR+L V +L L + L+ + C M +L L
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV-SHNRLQNISCCPMASLRHLD 127
Query: 163 HHNNSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLE 220
N + +P+ G LT L L S + +L LL L L+
Sbjct: 128 LSFN----DFDVLPVCKEFGNLTKLTFLGL------SAAKFRQLDLLPVAHLHLSCILLD 177
Query: 221 NVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIK 280
V + K + + +L + S + + L L+ +N++
Sbjct: 178 LVSY--HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDEN 234
Query: 281 GYEGMKFPTWLGDSSFSNLVTLKFKNCGM----CTALPSMGQLPSLKHLTVRGMSRVKRL 336
M F + L L+ + ++ L +++L + ++ +
Sbjct: 235 CQRLMTFLSELTRG--PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT----I 288
Query: 337 GSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEG-FPKLRELHILRCSKLKG 395
+ L++L+ E+ + + E + E++I S
Sbjct: 289 TERIDREEFTYSETALKSLMIEH-------VKNQVFLFSKEALYSVFAEMNIKMLSI--- 338
Query: 396 TFPEHLPALEMLVIEGC---EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVV 452
P + M+ L+ + + L +++
Sbjct: 339 ---SDTPFIHMVCPPSPSSFTFLNFTQNVFTDS------------VFQGCSTLKRLQTLI 383
Query: 453 CRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKL 512
+ N + + + LE +D+ + +++ S+ L ++S L
Sbjct: 384 LQ--RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-ML 440
Query: 513 QSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSF 572
V L +++ L L + ++ +P+ L +L+E+ + + L S
Sbjct: 441 TGSVFR----------CLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS-NQLKSV 488
Query: 573 PEVALPS--KLKKI----NIWHC 589
P+ L+ I N W C
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDC 511
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 71/426 (16%), Positives = 137/426 (32%), Gaps = 43/426 (10%)
Query: 526 QLCELSC----RLEYLTLSGCQGLVKLPQSSL--SLSSLREIVIY----KCSSLVSFPEV 575
+L +SC L +L LS LP +L+ L + + + L+ +
Sbjct: 111 RLQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Query: 576 ALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDI 635
L L + +H +K + N+++ L + VQ+ S+ L
Sbjct: 170 HLSCILLDLVSYH---IKGGETESLQIPNTTVLHLVFHPNSLFS----VQVNMSVNALGH 222
Query: 636 LSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFS--KNELPATLESLE 693
L NI+ + S +LL + C + P +E L
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 694 VGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIE 753
+ NL ++ E + +E + +E + L+++ I+
Sbjct: 283 IYNL--TITERIDRE---EFTYSETALKSLMIEHVKNQV---FLFSKEALYSVFAEMNIK 334
Query: 754 IWNCGNLVSFPEG-GLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE 812
+ + + + L +++ +G L LQ L + + L +
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL-QRNGLKNFF 393
Query: 813 EEDGLPTNLQSLDIWGN-IEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP-LPASL 870
+ + N+ SL+ + S R S+ L + F LP +
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452
Query: 871 TSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPS--SLLRLWIEG---- 924
L++ + + + LQ L EL + +LK P SL +W+
Sbjct: 453 KVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 925 --CPLI 928
CP I
Sbjct: 511 CTCPGI 516
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 66/448 (14%), Positives = 133/448 (29%), Gaps = 65/448 (14%)
Query: 462 LVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRL-------------TIAS 508
L EL+++D+ + I +G Q +S L L +
Sbjct: 40 LRHLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Query: 509 CPKLQSLVAEE---EKDQQQQLCELSCRLEYLTLSGCQ-GLVKLPQSSLSLSSLREIVIY 564
LQ LVA E + + L L+ L ++ KLP+ +L++L + +
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 565 KC-------SSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHS 617
+ L + +P +++ P A+ L LT+ +
Sbjct: 158 SNKIQSIYCTDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLRNNF- 211
Query: 618 LTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLT 677
+ ++ L L + L +L IE L
Sbjct: 212 ---DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK--SALEGLCNLTIEE-FRLA 265
Query: 678 CI-FSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL 736
+ + +++ L ++ S + + +E + + N + + + +C
Sbjct: 266 YLDYYLDDIIDLFNCL------TNVSSFSLVSVT-IERV-KDFSYNFGWQHLELVNCKFG 317
Query: 737 KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTS 796
+ L +L +L + +F E LP + + L G + TS
Sbjct: 318 QFPTLKLKSLKRLTFT---SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 797 LQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856
L+ L + + ++ L+ LD + + F +L L+I
Sbjct: 375 LKYLDLS-FNGVITMSSNFLGLEQLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISH 430
Query: 857 CDDDMVSFPLPASLTSLEISFFPNLERL 884
F L L
Sbjct: 431 T-----------HTRVAFNGIFNGLSSL 447
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 73/497 (14%), Positives = 153/497 (30%), Gaps = 85/497 (17%)
Query: 470 LPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 529
L L++L +T + N + + +LK L +A +QS E
Sbjct: 99 LSSLQKLVA----VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY------FSN 147
Query: 530 LSCRLEYLTLSGCQGLVKLPQSSLS-LSSLREIVIY---KCSSLVSFPEVALPS-KLKKI 584
L+ LE+L LS + + + + L L + + + + + A +L K+
Sbjct: 148 LT-NLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 585 NIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS-LKQLDILSCDNIRT 643
+ + ++ + + LE+ + + +S L+ L L+ + R
Sbjct: 206 TLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 644 LTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKS 703
++ + T+ + + S ++ + + + LE+ N
Sbjct: 265 AYLDYYLDDIIDLFNCLTN--VSSFSLVSV-TIERVKDFSYNFG-WQHLELVNC--KFGQ 318
Query: 704 LGVFECSKLESIAERLDNNTSLEIISIGSCGNLKIL-------------PSGLHNLCQLQ 750
+ L+ + +N S +L+ L L+
Sbjct: 319 FPTLKLKSLKRL--TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 751 EIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKG-LHNLTSLQELRIG----RG 805
+++ +++ L +L L+ + +L +L L I R
Sbjct: 377 YLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 806 VELPSLEEEDGLPTNLQSLDIWGN--IEIWKSMIERGRGFHGFSSLRRLEIRGCD----D 859
+GL +L+ L + GN E + I F +L L++ C
Sbjct: 436 AFNGIF---NGLS-SLEVLKMAGNSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLS 486
Query: 860 DMVSFPLPA---------SLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK 910
L + + SL+ + L L L + K
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS----------LQVLDYSLNH-IMTSKK 535
Query: 911 ---KGLPSSLLRLWIEG 924
+ PSSL L +
Sbjct: 536 QELQHFPSSLAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 86/470 (18%), Positives = 146/470 (31%), Gaps = 87/470 (18%)
Query: 76 HLAYSILPKLFKLQRLRAFSLRGYHI--FELPDSIGDLRYLRYLNLSGTHIRAL-PESVN 132
+LA + L+ L+ ++ I F+LP+ +L L +L+LS I+++ +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 133 KLYNLHTLLLE---DCRELKKLCADMGNLIKLHH-HNNSNTDSLEEMPLGIGKLTCLQTL 188
L+ + L L + + I+LH +N DSL M I L L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 189 -----CNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELL 243
G S L+ L +L +E +L + + + N+
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLT--IEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 244 LRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWL-----GDSSFSN 298
L L+++ + QF + +K T+ S +
Sbjct: 289 LVSVTIE-RVKDFSYNFGWQHLELV--NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 299 LVTLKF------KNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCL 352
L +L+F S SLK+L + + V + S F G L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLG------LEQL 398
Query: 353 ETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVI 409
E L F++ + S V L L + + + F L +LE+L +
Sbjct: 399 EHLDFQHSN-----LKQMSEFSVFLSLRNLIYLD-ISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 410 EGC----EELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGP 465
G L + L L L + C+ L
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQ---------------------------LEQL 485
Query: 466 LKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSL 515
L L++++M SHN SL LQ L
Sbjct: 486 SPTAFNSLSSLQVLNM--------SHNN----FFSLDTFPYKCLNSLQVL 523
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 46/252 (18%), Positives = 98/252 (38%), Gaps = 31/252 (12%)
Query: 665 LEHLHIESCLSLTCIFSKNELPATLESLEVGN-----LPP--SLKSLGVFECS--KLESI 715
+++ S+T ++NEL +++ + N + L ++ + KL I
Sbjct: 23 TIKDNLKKK-SVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 80
Query: 716 AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775
+ L N +L + + + S L +L +L+ + + + N +S G + +L
Sbjct: 81 -KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEH--NGISDINGLVHLPQLES 135
Query: 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835
L + ++ + L LT L L + ++ + GL T LQ+L + N
Sbjct: 136 LYLGNN-KITDIT-VLSRLTKLDTLSL-EDNQISDIVPLAGL-TKLQNLYLSKN------ 185
Query: 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILT 895
I R G +L LE+ + ++L ++ S+V +I++
Sbjct: 186 HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP-----NTVKNTDGSLVTPEIIS 240
Query: 896 ELRLYHCRKLKY 907
+ Y +K+
Sbjct: 241 DDGDYEKPNVKW 252
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 62/236 (26%)
Query: 556 SSLREIVI------------YKCSSLVSFPEVALPSKLKKINIWH--CDALKS----LPE 597
+L ++++ C +L + K + D++ + L
Sbjct: 101 QTLEKVILSEKIKNIEDAAFKGCDNLKI---CQIRKKTAPNLLPEALADSVTAIFIPLGS 157
Query: 598 AWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQL------DILSCDNIRTLTVEEGIQ 651
+ + E L ++ +L L +I LT+E +
Sbjct: 158 SDAYRFKNRWEHFAFIEGEPLE---TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD 214
Query: 652 CSSSSSRRYTSSLLEHLHI-------------ESCLSLTCIFSKNELPATLESLEVG--- 695
+ R L L I L I +LP L+++
Sbjct: 215 NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI----KLPHNLKTIGQRVFS 270
Query: 696 ---------NLPPSLKSLGV---FECSKLESIAERLDNNTSLEIISIGSCGNLKIL 739
LP S+ ++ C L + D T+L G+ K++
Sbjct: 271 NCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 39/176 (22%)
Query: 684 ELPATLESLEVGNLPPSLKSLGVFECSKLESIAER--LDNNTSLEIISIGSCGNLKILPS 741
+ + L L+ L F+ S L+ ++E + +L + I + ++ +
Sbjct: 92 TMSSNFLGL------EQLEHL-DFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143
Query: 742 G-LHNLCQLQEIEIWNCGNLVSFPEGGL-PCAKLMRLEIYGCERLEALPKG-LHNLTSLQ 798
G + L L+ +++ +F L L++ C +LE L ++L+SLQ
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 202
Query: 799 ELRIGRG----------VELPSLEEED---------------GLPTNLQSLDIWGN 829
L + L SL+ D P++L L++ N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV-NKLYNLH 138
+ L L L L + LP L L L++S + +LP L L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 139 TLLLEDCRELKKL----CADMGNLIKLHHHNNSNTDSLEEMPLGI-GKLTCLQTL 188
L L+ LK L L KL NN +L E+P G+ L L TL
Sbjct: 128 ELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN----NLTELPAGLLNGLENLDTL 177
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 17/180 (9%)
Query: 682 KNELPATLESLEVGNLPPS-LKSLGVFECS--KLESIAERLDNNTSLEIISIGSCGNLKI 738
K L L N+ + + SL + + + ++ +++ ++I +
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY 81
Query: 739 LPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRLEIYGCERLEALPKGLHNLTS 796
+ + L L+ + I GL L L+I +++ ++ L
Sbjct: 82 --NPISGLSNLERLRIMGKDVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKINTLPK 137
Query: 797 LQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856
+ + + + + L L+SL+I + + RG F L +L
Sbjct: 138 VNSIDLSYNGAITDIMPLKTL-PELKSLNIQFD------GVHDYRGIEDFPKLNQLYAFS 190
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 55/384 (14%), Positives = 107/384 (27%), Gaps = 110/384 (28%)
Query: 565 KCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGV 624
K S + P + + L+ +I A + N L L ++ Y G
Sbjct: 7 KDSPSAANPVEPIGASLEDFSIEQLPAKTI----YALGENIDLTGLNVTG----KYDDGK 58
Query: 625 QLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684
Q P + I + + +E + ++ + L+
Sbjct: 59 QRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEIL------ 112
Query: 685 LPATLESLEVGNLPPSLKSLG--VFECSKLESIAERLDNNTSLEIISIG--SCGNLK--I 738
+ LP S+KS+ F S++ + N L+ I ++ +
Sbjct: 113 -----KGYNEIILPNSVKSIPKDAFRNSQIAKV----VLNEGLKSIGDMAFFNSTVQEIV 163
Query: 739 LPSGLHNLCQLQEIEIW---NCGNL--VSFPEGGLPCAKLMRLEIYGCERLEALPKGLHN 793
PS L ++++ C NL + + + +
Sbjct: 164 FPSTL------EQLKEDIFYYCYNLKKADLSKTKI---TKLPASTFVY------------ 202
Query: 794 LTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLE 853
++E+ + P L+ + F S L+ +E
Sbjct: 203 -AGIEEVLL---------------PVTLKEIGSQA--------------FLKTSQLKTIE 232
Query: 854 I------------RGCDDDMVSFPLPASLTSLEISFF---PNLER--LSSSIVDLQILTE 896
I R + + LP +T++ F P L S +
Sbjct: 233 IPENVSTIGQEAFRESG--ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290
Query: 897 LR---LYHCRKLKYFPKKGLPSSL 917
+ L C KL F +P S+
Sbjct: 291 IHPYCLEGCPKLARF---EIPESI 311
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 28/144 (19%)
Query: 739 LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQ 798
LP+G + ++Q I+ + + + + ++ + C +E L L+ L+
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLE 110
Query: 799 ELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERG-RGFHGFSSLRRLEIRGC 857
L+ ++ ++I + ++G H F +L+ L +
Sbjct: 111 NLQ-----------------KSMLEMEIISCGNV----TDKGIIALHHFRNLKYLFLSDL 149
Query: 858 ----DDDMVSFPLPASLTSLEISF 877
+ + + SL SLE+
Sbjct: 150 PGVKEKEKIVQAFKTSLPSLELKL 173
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 96/555 (17%), Positives = 164/555 (29%), Gaps = 175/555 (31%)
Query: 294 SSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIP----F 349
S + L +L N + ++ SL L + S G +
Sbjct: 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS--------LSGPVTTLTSLGSC 125
Query: 350 PCLETL-LFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPE------HLP 402
L+ L + N ++ +S G L L L + + G
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLK------LNSLEVLD-LSANSISGANVVGWVLSDGCG 178
Query: 403 ALEMLVIEGCE-ELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVF 461
L+ L I G + V VSR L L +
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN--------------------------- 211
Query: 462 LVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEK 521
+ P L L+ +D+ S N L D S I++C +L+ L
Sbjct: 212 FSTGI-PFLGDCSALQHLDI--------SGNKLSGDFSR----AISTCTELKLLNISS-- 256
Query: 522 DQQQQLCELS--------CRLEYLTLSGCQGLVKLPQS-SLSLSSLREIVIYKCSSLVSF 572
+ L+YL+L+ + ++P S + +L + + +
Sbjct: 257 ------NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 573 P-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLK 631
P S L+ + + + LP + L++L +S F G +LP SL
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNE----FSG-ELPESLT 364
Query: 632 QLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691
L S+ L L + S + + N +
Sbjct: 365 NL----------------------------SASLLTLDLSSN-NFSGPILPNLCQNPKNT 395
Query: 692 LEV---------GNLPPSLKSLGVFECSKLESIAERLDNNTSL--EI-ISIGSCGNLKIL 739
L+ G +PP+L CS+L S+ L N L I S+GS L+ L
Sbjct: 396 LQELYLQNNGFTGKIPPTL-----SNCSELVSL--HLSFN-YLSGTIPSSLGSLSKLRDL 447
Query: 740 -----------PSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALP 788
P L + L+ + + N ++ +P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDF--NDLTGE----------------------IP 483
Query: 789 KGLHNLTSLQELRIG 803
GL N T+L + +
Sbjct: 484 SGLSNCTNLNWISLS 498
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTHIR-ALPESVNKLYNL 137
+I L L +LR L + E+P + ++ L L L + +P ++ NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 138 HTLLLEDCR-------ELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188
+ + L + R + +L NL L NNS + ++ P +G L L
Sbjct: 493 NWISLSNNRLTGEIPKWIGRL----ENLAILKLSNNSFSGNI---PAELGDCRSLIWL 543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 80 SILPKLFKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTHIR-ALPESVNKLYN 136
I L L L + G + +P +I L L YL ++ T++ A+P+ ++++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 137 LHTLLLEDCR-------ELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQT 187
L TL + + + NL+ + N + ++ P G + L T
Sbjct: 127 LVTLDFSYNALSGTLPPSI----SSLPNLVGITFDGNRISGAI---PDSYGSFSKLFT 177
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 83 PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLL 142
+ R R LRGY I + + L ++ S IR L + L L TLL+
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71
Query: 143 ED---CRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLC 189
+ CR + L + +L +L NN + L ++ + L L LC
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLC 119
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.98 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.9 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.9 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.89 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.87 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.87 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.83 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.81 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.81 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.8 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.8 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.8 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.8 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.79 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.79 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.79 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.78 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.77 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.77 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.76 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.75 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.75 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.75 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.73 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.73 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.73 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.69 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.69 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.69 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.69 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.68 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.68 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.68 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.68 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.65 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.63 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.61 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.61 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.6 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.58 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.58 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.57 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.53 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.53 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.52 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.5 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.47 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.47 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.47 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.46 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.45 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.44 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.43 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.42 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.42 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.42 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.42 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.4 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.4 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.38 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.35 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.35 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.33 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.32 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.31 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.29 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.29 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.26 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.25 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.21 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.2 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.17 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.14 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.14 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.11 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.11 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.0 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.98 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.98 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.88 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.76 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.76 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.74 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.71 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.67 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.65 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.51 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.46 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.3 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.17 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.04 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.0 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.95 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.88 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.88 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.79 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.75 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.69 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.97 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.57 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.2 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.9 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=526.49 Aligned_cols=427 Identities=15% Similarity=0.070 Sum_probs=229.2
Q ss_pred cCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcc-cchhhhHHHHHhhhhhcccccceEEEec
Q 002156 463 VGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 463 ~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
.+.+|..|.++++|+.+++++|.+....+...+..+++|++|++++| .++ .++.. +. ...++|++|++++
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-l~-------~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES-LT-------NLSASLLTLDLSS 377 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTT-HH-------HHTTTCSEEECCS
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHH-HH-------hhhcCCcEEEccC
Confidence 33444445555555555555554432233333445555555555553 222 22211 10 0112566666666
Q ss_pred CCCCCCccccccC--CCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCC
Q 002156 542 CQGLVKLPQSSLS--LSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 542 ~~~~~~~~~~l~~--l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
|.+.+.+|..+.. +++|++|++++|.....+| .+..+++|++|++++|...+.+|..+ ..+++|++|++++|...
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCC
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCccc
Confidence 6655555554444 5566666666664444444 24455666666666665555555544 45556666666554322
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++. ....+++|+.|++++|.-.. .+|..+. .+
T Consensus 456 ~~~p~----------------------------------~~~~l~~L~~L~L~~N~l~~------~~p~~l~-----~l- 489 (768)
T 3rgz_A 456 GEIPQ----------------------------------ELMYVKTLETLILDFNDLTG------EIPSGLS-----NC- 489 (768)
T ss_dssp SCCCG----------------------------------GGGGCTTCCEEECCSSCCCS------CCCGGGG-----GC-
T ss_pred CcCCH----------------------------------HHcCCCCceEEEecCCcccC------cCCHHHh-----cC-
Confidence 11111 11112233333333321110 1111111 11
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|+..+.+|..+..+..+..+.+
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 57788888888777777777888888888888888777777877888888888888888777777765554443333222
Q ss_pred cCC---------c-------------CcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhh
Q 002156 779 YGC---------E-------------RLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSM 836 (959)
Q Consensus 779 ~~~---------~-------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 836 (959)
..+ . +.+..+..+..++.++.++++.|.+.+.+|..++.+++|+.||+++|......+
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 210 0 111112222233334444444455555555555555555556665554332211
Q ss_pred hhhccCCCCCCCccEEEEcccCCCcc---cccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCC
Q 002156 837 IERGRGFHGFSSLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGL 913 (959)
Q Consensus 837 ~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 913 (959)
..+..+++|+.|++++|..... .+.-+++|+.||+++|...+.+|..+..+++|++|++++|+.-..+|..+.
T Consensus 650 ----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 650 ----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred ----HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 2344555555666555432211 122446677777777666668999999999999999999998899998877
Q ss_pred ccccceeeccCChhHH----HHHhhcCCCccccccCcceEE
Q 002156 914 PSSLLRLWIEGCPLIE----EKCRKDGGQYWDLLTHIPRVQ 950 (959)
Q Consensus 914 ~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~i~~~~~~~ 950 (959)
+.++....+.|||.++ ..|....+++|.+|+|.|.++
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 7788888888887543 269999999999999999764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=497.43 Aligned_cols=648 Identities=16% Similarity=0.095 Sum_probs=343.8
Q ss_pred CcccEEeccccCCCCCCccccc---ccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCc-ccch--hhh
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYS---ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIR-ALPE--SVN 132 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~-~lp~--~i~ 132 (959)
.+++.|.+.+.. +.+. +++++.++++|+.++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 466777665533 2334 677778888888888888877667777888888888888888776 4566 778
Q ss_pred ccccccEEeccCcchhhhhhHhh-hcccccceeecCCCCcccccccc---cccccCCceeceEEeccCCCCChhhhhhhh
Q 002156 133 KLYNLHTLLLEDCRELKKLCADM-GNLIKLHHHNNSNTDSLEEMPLG---IGKLTCLQTLCNFVVGKDSGSGLSELKLLM 208 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 208 (959)
++++|++|++++|.....+|..+ +++++|++|++++|......|.. ++++++|++|++..+....
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 192 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG----------- 192 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES-----------
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc-----------
Confidence 88888888888865555566554 77888888888888733333333 5666777766432211000
Q ss_pred hcccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCC-CC
Q 002156 209 HLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGM-KF 287 (959)
Q Consensus 209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~ 287 (959)
. ..+..+++|++|++++|.... ..+.+..+++|++|+++++... .+
T Consensus 193 -------------~--------~~~~~l~~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 193 -------------D--------VDVSRCVNLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp -------------C--------CBCTTCTTCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred -------------c--------CCcccCCcCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcc
Confidence 0 002344555555555554421 1112444455555555554443 22
Q ss_pred CccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccc
Q 002156 288 PTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWI 367 (959)
Q Consensus 288 p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 367 (959)
|..+.. +++|++|++++|.+.+.+|.. .+++|++|++++|.....+
T Consensus 240 ~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~i------------------------------- 285 (768)
T 3rgz_A 240 SRAIST--CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEI------------------------------- 285 (768)
T ss_dssp HHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESC-------------------------------
T ss_pred cHHHhc--CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCcc-------------------------------
Confidence 333322 455555555555444443333 4455555555544322111
Q ss_pred cccCCCCccc-cccccceeccccCccccCCCCC---CCCCccEEEEeccCCc---cc-ccCCCCCccEEEecCCCchhhh
Q 002156 368 SHGSSQGVVE-GFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEEL---SV-SVSRLPALCKLQIGGCKKVVWE 439 (959)
Q Consensus 368 ~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~-~~~~l~~L~~L~l~~~~~l~~~ 439 (959)
+.... .+++|++|++++| .+++.+|. .+++|++|++++|... .. .+..+++|+.|++++|.
T Consensus 286 -----p~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~----- 354 (768)
T 3rgz_A 286 -----PDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE----- 354 (768)
T ss_dssp -----CCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-----
T ss_pred -----CHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-----
Confidence 11122 2355555555553 34434442 2344444444444321 11 24556666666666665
Q ss_pred cccccCCCCCcceecccCCcceecCCCCCCCCCcc-eEEEeccCcccccccccCcccc-cCCCccEEEEccCCCcccchh
Q 002156 440 SATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLE-ELEIIDMKEQTYIWKSHNGLLQ-DISSLKRLTIASCPKLQSLVA 517 (959)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~ 517 (959)
+.+.+|..+.++. +|+.+++++|.+....+..... .+++|++|++++| .++...+
T Consensus 355 ----------------------l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p 411 (768)
T 3rgz_A 355 ----------------------FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIP 411 (768)
T ss_dssp ----------------------EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECC
T ss_pred ----------------------cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccC
Confidence 4444555555554 5666666666553322222211 1445555555553 2221111
Q ss_pred hhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccC
Q 002156 518 EEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLP 596 (959)
Q Consensus 518 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 596 (959)
..+ .-+++|++|++++|.+.+.+|..+..+++|++|++++|.....+| .+..+++|++|++++|...+.+|
T Consensus 412 ~~l--------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 412 PTL--------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp GGG--------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred HHH--------hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 111 011455555555555555555555555555555555554443444 23445555555555555554554
Q ss_pred hhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccc
Q 002156 597 EAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSL 676 (959)
Q Consensus 597 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 676 (959)
..+ ..+++|++|++++|.....++ .....+++|+.|++++|.-.
T Consensus 484 ~~l--~~l~~L~~L~L~~N~l~~~~p----------------------------------~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 484 SGL--SNCTNLNWISLSNNRLTGEIP----------------------------------KWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp GGG--GGCTTCCEEECCSSCCCSCCC----------------------------------GGGGGCTTCCEEECCSSCCE
T ss_pred HHH--hcCCCCCEEEccCCccCCcCC----------------------------------hHHhcCCCCCEEECCCCccc
Confidence 444 445555555555543221111 11111223333333332211
Q ss_pred ccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeeccc----------------------C
Q 002156 677 TCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSC----------------------G 734 (959)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------------------~ 734 (959)
. .+|..+.. + ++|+.|++++|...+.+|..+..+..+..+.+..+ .
T Consensus 528 ~------~~p~~l~~-----l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 528 G------NIPAELGD-----C-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp E------ECCGGGGG-----C-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred C------cCCHHHcC-----C-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 0 01111111 1 35555555555555555555444443333322211 0
Q ss_pred CCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc
Q 002156 735 NLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE 814 (959)
Q Consensus 735 ~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 814 (959)
..+..+..+..++.++.+++..+...+.+|..+..+++|++|++++|++.+.+|..++++++|+.|++++|.+.+.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 11122233334445555556666666667777778888888888888888888888888888888888888888888888
Q ss_pred CCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCC
Q 002156 815 DGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQIL 894 (959)
Q Consensus 815 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 894 (959)
++.+++|++||+++|......+ ..+..+++|++|++++ |+..+.+|. .+.+.++
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~ls~---------------------N~l~g~iP~-~~~~~~~ 729 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIP----QAMSALTMLTEIDLSN---------------------NNLSGPIPE-MGQFETF 729 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCC----GGGGGCCCCSEEECCS---------------------SEEEEECCS-SSSGGGS
T ss_pred HhCCCCCCEEECCCCcccCcCC----hHHhCCCCCCEEECcC---------------------CcccccCCC-chhhccC
Confidence 8888888888888886443222 3344555555555554 444445663 3455566
Q ss_pred cEEecCCCcCCC
Q 002156 895 TELRLYHCRKLK 906 (959)
Q Consensus 895 ~~L~l~~c~~l~ 906 (959)
....+.+|+.+-
T Consensus 730 ~~~~~~gN~~Lc 741 (768)
T 3rgz_A 730 PPAKFLNNPGLC 741 (768)
T ss_dssp CGGGGCSCTEEE
T ss_pred CHHHhcCCchhc
Confidence 666677776553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=423.97 Aligned_cols=352 Identities=17% Similarity=0.073 Sum_probs=247.1
Q ss_pred ccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcc-----cCh----hhhcC
Q 002156 533 RLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKS-----LPE----AWMCD 602 (959)
Q Consensus 533 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~----~~~~~ 602 (959)
+|++|++++|.+.+..|..++.+++|++|++++|......+ .+..+++|+.|++++|..... +|. .+ .
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~--~ 326 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF--Q 326 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT--T
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc--c
Confidence 47777777776665555666677777777777765444333 355566677777666543221 111 11 3
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 603 TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
.+++|++|++++|. .....+..+..+++|+.|++++|..-....+.
T Consensus 327 ~l~~L~~L~l~~n~----------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 327 WLKCLEHLNMEDND----------------------------------IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TCTTCCEEECCSCC----------------------------------BCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCCEEECCCCc----------------------------------cCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 45555555555532 11112222334556666666665311110111
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeecccccccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLV 761 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~ 761 (959)
..+.. + -.++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|....
T Consensus 373 ~~f~~-~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 373 ETFVS-L-------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp TTTGG-G-------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhcc-c-------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 11100 0 01478999999999888888889999999999999998887665 678899999999999998766
Q ss_pred ccCCCCCCCCCccEEEecCCcCc--CccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhh-
Q 002156 762 SFPEGGLPCAKLMRLEIYGCERL--EALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIE- 838 (959)
Q Consensus 762 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~- 838 (959)
..+..+..+++|++|++++|.+. +..|..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.........
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 67778888999999999999875 567888999999999999999999777777899999999999999754321110
Q ss_pred ---hccCCCCCCCccEEEEcccCCCccc---ccCCCCCceEeeccCCCCcccccc-cCCCCCCcEEecCCCcCCCCCCCC
Q 002156 839 ---RGRGFHGFSSLRRLEIRGCDDDMVS---FPLPASLTSLEISFFPNLERLSSS-IVDLQILTELRLYHCRKLKYFPKK 911 (959)
Q Consensus 839 ---~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~ 911 (959)
....+.++++|+.|++++|....+. +.-+++|+.|++++ +.++.+|+. +..+++|++|++++| .++.++..
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChh
Confidence 1123678899999999998665443 34567899999998 578888874 678999999999996 67777765
Q ss_pred CC---ccccceeeccCChhHHH
Q 002156 912 GL---PSSLLRLWIEGCPLIEE 930 (959)
Q Consensus 912 ~~---~~~L~~L~l~~c~~l~~ 930 (959)
.+ .++|+.|++++||...+
T Consensus 603 ~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 603 VFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHHHTTCSEEECTTCCCCBC
T ss_pred HhcccccccCEEEccCCCcccC
Confidence 33 47899999999886543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=416.12 Aligned_cols=549 Identities=16% Similarity=0.068 Sum_probs=291.7
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc-cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhH-h
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCA-D 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~ 154 (959)
..++|..+. +++++|++++|.++.+|. .|.++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|. .
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhh
Confidence 345555554 577888888888777743 677888888888888877766 566778888888888874 5566665 4
Q ss_pred hhcccccceeecCCCCccccccc-ccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhcc
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 233 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (959)
|+++++|++|++++|. +..+|. .|+++++|++|++..+
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n---------------------------------------- 131 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN---------------------------------------- 131 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS----------------------------------------
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC----------------------------------------
Confidence 7788888888888877 666653 4677777766643221
Q ss_pred CCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcc-ccCCCCCCccEEEEecCCCCCC
Q 002156 234 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTW-LGDSSFSNLVTLKFKNCGMCTA 312 (959)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~ 312 (959)
.... ..+..+..+++|++|+++++....++.. +....+++|++|++++|.+.+.
T Consensus 132 --------------~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 132 --------------GLSS-----------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp --------------CCSC-----------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred --------------cccc-----------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 1100 0011223344455555555444443321 1111246777777777766655
Q ss_pred CC-CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceeccccCc
Q 002156 313 LP-SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCS 391 (959)
Q Consensus 313 ~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 391 (959)
.+ .++.+++|+.|++.++........... .....++|+.|+++++
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~---------------------------------~~l~~~~L~~L~L~~n- 232 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLC---------------------------------LELANTSIRNLSLSNS- 232 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHH---------------------------------HHHTTSCCCEEECTTS-
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHH---------------------------------HHhhhccccEEEccCC-
Confidence 55 566677777777766542111000000 0001234555555542
Q ss_pred cccCCCCCCCC-----CccEEEEeccCCcc---cccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceec
Q 002156 392 KLKGTFPEHLP-----ALEMLVIEGCEELS---VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLV 463 (959)
Q Consensus 392 ~l~~~~p~~l~-----~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (959)
.+++..|..+. +|++|++++|.... ..+..+++|+.|++++|. +.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---------------------------l~ 285 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------------------IQ 285 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC---------------------------BS
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc---------------------------cC
Confidence 33323332221 13333333322111 123444555555555554 22
Q ss_pred CCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCC
Q 002156 464 GPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQ 543 (959)
Q Consensus 464 ~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 543 (959)
+..+..|..+++|+.++++++....... ...++ .+....+ ..+++|++|++++|.
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~lp--------------~i~~~~~--------~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSIS---LASLP--------------KIDDFSF--------QWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC---------CC--------------EECTTTT--------TTCTTCCEEECCSCC
T ss_pred ccChhhhcCCCCccEEeccchhhhcccc---ccccc--------------ccChhhc--------ccCCCCCEEECCCCc
Confidence 3333344445555555544332100000 00001 1100000 112788888888888
Q ss_pred CCCCccccccCCCCcceeeeccCCC-cccCCC--Cc--CCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCC
Q 002156 544 GLVKLPQSSLSLSSLREIVIYKCSS-LVSFPE--VA--LPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 544 ~~~~~~~~l~~l~~L~~L~L~~~~~-l~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
+.+..+..+.++++|++|++++|.. ...++. +. ..++|+.|++++|...+..+..+ ..+++|++|++++|...
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCc
Confidence 8877777888899999999988853 223332 11 13578888888888766656555 67778888888775422
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++... +..+
T Consensus 419 ~~~~~~~--------------------------------------------------------------------~~~l- 429 (680)
T 1ziw_A 419 QELTGQE--------------------------------------------------------------------WRGL- 429 (680)
T ss_dssp EECCSGG--------------------------------------------------------------------GTTC-
T ss_pred cccCccc--------------------------------------------------------------------ccCc-
Confidence 2111100 0111
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC--cccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL--KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
++|++|++++|...+..+..+..+++|++|++++|... +.+|..+..+++|++|++++|......+..+..+++|++|
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 34555555555544444445555666666666665543 3455566666666666666664443333345556666666
Q ss_pred EecCCcCcCccc--------cccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 777 EIYGCERLEALP--------KGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 777 ~l~~~~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++++|++.+..+ ..+.++++|+.|++++|.+....+..+..+++|++|++++|...... ...+..+++
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~ 585 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP----ASVFNNQVS 585 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTT
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC----HhHhCCCCC
Confidence 666666543211 12456666666666666666333334566666666666666432111 123344455
Q ss_pred ccEEEEcc
Q 002156 849 LRRLEIRG 856 (959)
Q Consensus 849 L~~L~l~~ 856 (959)
|+.|++++
T Consensus 586 L~~L~L~~ 593 (680)
T 1ziw_A 586 LKSLNLQK 593 (680)
T ss_dssp CCEEECTT
T ss_pred CCEEECCC
Confidence 55555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=383.56 Aligned_cols=289 Identities=18% Similarity=0.127 Sum_probs=146.3
Q ss_pred ccceEEE-ecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 533 RLEYLTL-SGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 533 ~L~~L~L-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
.++.+++ ..+...+.+|. +..+++|++|++++|.. +.+|.+..+++|++|++++|.. +.+| .+ .+++|++|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~---~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL---DLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC---CCSSCCEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC---CCCccceee
Confidence 4666666 44444445554 77778888888887744 4566666677777777777776 5555 21 567777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|..+..++. .. +
T Consensus 335 l~~n~~~~~~~~-~~-----------------------------------l----------------------------- 349 (606)
T 3vq2_A 335 LTMNKGSISFKK-VA-----------------------------------L----------------------------- 349 (606)
T ss_dssp EESCSSCEECCC-CC-----------------------------------C-----------------------------
T ss_pred ccCCcCccchhh-cc-----------------------------------C-----------------------------
Confidence 777543322210 00 1
Q ss_pred cccCCCCCCCceEeeccChhhHH--HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLES--IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGL 768 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~ 768 (959)
++|++|++++|...+. ++..+..+++|++|++++|...+ +|..+..+++|++|++++|...+..| ..+.
T Consensus 350 -------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 350 -------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp -------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred -------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 2344444444433222 13344445555555554444322 33444455555555555554333333 2344
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCC-CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELP-SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFS 847 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 847 (959)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+ .+|..++.+++|++|++++|......+ ..+..++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~ 497 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLH 497 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh----hhhcccc
Confidence 44555555555555444444445555555555555555444 234444455555555555553221111 2233444
Q ss_pred CccEEEEcccCCCcc---cccCCCCCceEeeccCCCCcccccccCCCC-CCcEEecCCCcCCC
Q 002156 848 SLRRLEIRGCDDDMV---SFPLPASLTSLEISFFPNLERLSSSIVDLQ-ILTELRLYHCRKLK 906 (959)
Q Consensus 848 ~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~ 906 (959)
+|++|++++|..... .+..+++|+.|++++ +.++.+|..+..++ +|++|++++|+..-
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 444444444322111 111233444444444 35667777666665 47777777766543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=387.09 Aligned_cols=519 Identities=15% Similarity=0.095 Sum_probs=309.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..++|..+.. .+++|++++|.++.+ |.+|+++++|++|+|++|++..+ |..|+++++|++|++++|......|..|
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 4556666643 578888888888777 56788888888888888888766 6678888888888888864444456678
Q ss_pred hcccccceeecCCCCcccccc-cccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccC
Q 002156 156 GNLIKLHHHNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (959)
+++++|++|++++|. +..++ ..++++++|++|
T Consensus 102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L---------------------------------------------- 134 (606)
T 3t6q_A 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESL---------------------------------------------- 134 (606)
T ss_dssp SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEE----------------------------------------------
T ss_pred cccccccEeeccccC-cccCCcchhccCCcccEE----------------------------------------------
Confidence 888888888888877 55542 224333333333
Q ss_pred CCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCC--CccccCCCCCCccEEEEecCCCCCC
Q 002156 235 GKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKF--PTWLGDSSFSNLVTLKFKNCGMCTA 312 (959)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~ 312 (959)
+++++....+ |.++ .+++|++|++++|.+...
T Consensus 135 -------------------------------------------~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 135 -------------------------------------------YLGSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp -------------------------------------------ECCSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEE
T ss_pred -------------------------------------------ECCCCcccccCccccc---CCcccCEEEcccCccccc
Confidence 3333333332 3333 278888888888887665
Q ss_pred CC-CCCCCCCcC--eeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccc--cceecc
Q 002156 313 LP-SMGQLPSLK--HLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPK--LRELHI 387 (959)
Q Consensus 313 ~~-~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~--L~~L~l 387 (959)
.+ .++.+++|+ +|++++|.........+. ...|+.|++.++....... ..+.+ ++.+.+
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~---------~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-------SAVFQSLNFGGTQNLLVIF---------KGLKNSTIQSLWL 232 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-------TCEEEEEECTTCSCHHHHH---------HHTTTCEEEEEEC
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhh-------hccccccccCCchhHHHHh---------hhccccchhheec
Confidence 44 567777777 777777654333222111 2344444444433211110 01111 111111
Q ss_pred ccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCCC
Q 002156 388 LRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLK 467 (959)
Q Consensus 388 ~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (959)
..+..+. .. ...+
T Consensus 233 ~~~~~~~-------------------------------------------~~------------------------~i~~ 245 (606)
T 3t6q_A 233 GTFEDMD-------------------------------------------DE------------------------DISP 245 (606)
T ss_dssp CCCTTSC-------------------------------------------CC------------------------CCCG
T ss_pred hhhcccc-------------------------------------------cc------------------------ccCh
Confidence 1111110 00 0000
Q ss_pred CCCCCcc--eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCC
Q 002156 468 PQLPKLE--ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGL 545 (959)
Q Consensus 468 ~~~~~L~--~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 545 (959)
..|..+. +|+.+++++|.+.. .....+..+++|++|+++++ .++.++..- .-+++|++|++++|.+.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l---------~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT-HLSELPSGL---------VGLSTLKKLVLSANKFE 314 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTS-CCSCCCSSC---------CSCTTCCEEECTTCCCS
T ss_pred hHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCC-ccCCCChhh---------cccccCCEEECccCCcC
Confidence 0111111 44455555544421 22233445555555555553 344333210 01256666666666666
Q ss_pred CCccccccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCccc--ChhhhcCCCCCccEEEEecCCCCccc
Q 002156 546 VKLPQSSLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSL--PEAWMCDTNSSLEILTISSCHSLTYF 621 (959)
Q Consensus 546 ~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~ 621 (959)
+..|..+..+++|++|++++|.....++. +..+++|++|++++|...... +..+ ..+++|++|++++|.. ..+
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l-~~~ 391 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEP-LSL 391 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSC-EEE
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcC-CcC
Confidence 55565666677777777777655444442 455667777777776654433 3333 5667777777776532 111
Q ss_pred cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCC
Q 002156 622 GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSL 701 (959)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L 701 (959)
.... ...+++|+.|+++++..... .+.. .+..+ ++|
T Consensus 392 ~~~~---------------------------------~~~l~~L~~L~l~~n~l~~~-~~~~---------~~~~l-~~L 427 (606)
T 3t6q_A 392 KTEA---------------------------------FKECPQLELLDLAFTRLKVK-DAQS---------PFQNL-HLL 427 (606)
T ss_dssp CTTT---------------------------------TTTCTTCSEEECTTCCEECC-TTCC---------TTTTC-TTC
T ss_pred CHHH---------------------------------hcCCccCCeEECCCCcCCCc-ccch---------hhhCc-ccC
Confidence 1100 01112333333333221100 0000 01122 578
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcc---cCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKI---LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++++|...+..|..++.+++|++|++++|.+.+. .+..+..+++|++|++++|...+..|..+..+++|++|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 8888888888777778888899999999999887663 2356788999999999999777667788888899999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhh
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIW 833 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 833 (959)
++|++.+..|..+.++++| .|++++|.+.+..|..+..+++|+.|++++|+...
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999888888889999999 99999999998888778888899999999997543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=390.03 Aligned_cols=246 Identities=16% Similarity=0.089 Sum_probs=159.0
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|+.|++++|.+ ..+| .+..+++|++|++++|.. +.+|.+ .+++|++|++++|.....++ + ..+++|++|+
T Consensus 285 ~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEE
T ss_pred CCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEE
Confidence 5666666666665 3344 566677777777777755 566655 66777777777775544432 1 4667777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|.. +..+. .+.....+++|+.|++++|.- .. +|.
T Consensus 357 ls~n~l-~~~~~-------------------------------~~~~~~~~~~L~~L~L~~n~l-~~------~~~---- 393 (606)
T 3vq2_A 357 LSRNAL-SFSGC-------------------------------CSYSDLGTNSLRHLDLSFNGA-II------MSA---- 393 (606)
T ss_dssp CCSSCE-EEEEE-------------------------------CCHHHHCCSCCCEEECCSCSE-EE------ECC----
T ss_pred CcCCcc-CCCcc-------------------------------hhhhhccCCcccEeECCCCcc-cc------chh----
Confidence 776431 11100 000011122333333333321 10 000
Q ss_pred cccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccc-ccCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLV-SFPEGGLP 769 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~ 769 (959)
.++.+ ++|++|++++|...+..+ ..+..+++|++|++++|...+..|..+..+++|++|++++|.... .+|..+..
T Consensus 394 -~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 394 -NFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp -CCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred -hccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 01122 577888888877776666 567788888888888888777777778888888888888886655 36777777
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|++|++++|.+.+..|..++++++|+.|++++|.+.+..|..++.+++|++|++++|+
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 8888888888888777777777888888888888888887777777788888888888885
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=389.92 Aligned_cols=515 Identities=14% Similarity=0.110 Sum_probs=306.2
Q ss_pred CcccEEeccccCCCCCCcccccc-cccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCccc-chhhhccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSI-LPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRAL-PESVNKLY 135 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~ 135 (959)
++++.|.+.++. ...+ |..|.++++|++|++++|.++.+ |.+|+++++|++|+|++|++..+ |..+++++
T Consensus 33 ~~l~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSFNV-------LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TTCCEEECTTCC-------CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CcCcEEEccCCc-------cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 379999998765 3444 56789999999999999999887 78999999999999999999877 77899999
Q ss_pred cccEEeccCcchhhhh-hHhhhcccccceeecCCCCcccccc-cccccccCCceeceEEeccCCCCChhhhhhhhhcccc
Q 002156 136 NLHTLLLEDCRELKKL-CADMGNLIKLHHHNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGA 213 (959)
Q Consensus 136 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 213 (959)
+|++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..+++|++|+
T Consensus 106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~------------------------ 159 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLD------------------------ 159 (606)
T ss_dssp TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEE------------------------
T ss_pred cccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEE------------------------
Confidence 9999999996 45555 6679999999999999998 66653 2233355555553
Q ss_pred eeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCC-Ccccc
Q 002156 214 LEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKF-PTWLG 292 (959)
Q Consensus 214 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~ 292 (959)
+++|.. ..+ |..+.
T Consensus 160 ------------------------------L~~n~l-----------------------------------~~~~~~~~~ 174 (606)
T 3t6q_A 160 ------------------------------FQNNAI-----------------------------------HYLSKEDMS 174 (606)
T ss_dssp ------------------------------CCSSCC-----------------------------------CEECHHHHH
T ss_pred ------------------------------cccCcc-----------------------------------cccChhhhh
Confidence 222221 111 11111
Q ss_pred CCCCCCcc--EEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 293 DSSFSNLV--TLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 293 ~~~l~~L~--~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
.+++|+ +|++++|.+.+..+......+|++|++++|..+........ ...++.+.+..+........
T Consensus 175 --~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~l~~l~~~~~~~~~~~~i-- 243 (606)
T 3t6q_A 175 --SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK-------NSTIQSLWLGTFEDMDDEDI-- 243 (606)
T ss_dssp --TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTT-------TCEEEEEECCCCTTSCCCCC--
T ss_pred --hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhcc-------ccchhheechhhcccccccc--
Confidence 134444 45555555544444333445566666666543221110000 11122222222221111110
Q ss_pred CCCCcccccc--ccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCC
Q 002156 371 SSQGVVEGFP--KLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQ 448 (959)
Q Consensus 371 ~~~~~~~~~~--~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 448 (959)
.+..+..+. +|+.|+++++ .++ .++. ..+..+++|+.|+++++.
T Consensus 244 -~~~~~~~l~~~~L~~L~l~~n-~l~-~~~~-----------------~~~~~l~~L~~L~l~~n~-------------- 289 (606)
T 3t6q_A 244 -SPAVFEGLCEMSVESINLQKH-YFF-NISS-----------------NTFHCFSGLQELDLTATH-------------- 289 (606)
T ss_dssp -CGGGGGGGGGSEEEEEECTTC-CCS-SCCT-----------------TTTTTCTTCSEEECTTSC--------------
T ss_pred -ChhHhchhhcCceeEEEeecC-ccC-ccCH-----------------HHhccccCCCEEeccCCc--------------
Confidence 011111111 5667777663 444 2221 124455666666666654
Q ss_pred CcceecccCCcceecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhh
Q 002156 449 NSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLC 528 (959)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 528 (959)
+. .+|..+..+++|+.+++++|.+.. .....+..+
T Consensus 290 -------------l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l------------------------------ 324 (606)
T 3t6q_A 290 -------------LS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNF------------------------------ 324 (606)
T ss_dssp -------------CS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGC------------------------------
T ss_pred -------------cC-CCChhhcccccCCEEECccCCcCc-Cchhhhhcc------------------------------
Confidence 11 234445555555555555554421 111222333
Q ss_pred hcccccceEEEecCCCCCCccc-cccCCCCcceeeeccCCCcccC--C-CCcCCCCCCeEEEecCCCCcccChhhhcCCC
Q 002156 529 ELSCRLEYLTLSGCQGLVKLPQ-SSLSLSSLREIVIYKCSSLVSF--P-EVALPSKLKKINIWHCDALKSLPEAWMCDTN 604 (959)
Q Consensus 529 ~~~~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 604 (959)
++|++|++++|...+.+|. .+..+++|++|++++|...... + .+..+++|++|++++|......+..+ ..+
T Consensus 325 ---~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 399 (606)
T 3t6q_A 325 ---PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KEC 399 (606)
T ss_dssp ---TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTC
T ss_pred ---CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCC
Confidence 4455555555544433332 2455555555555555433221 1 24445555555555555444333333 455
Q ss_pred CCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCC
Q 002156 605 SSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNE 684 (959)
Q Consensus 605 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 684 (959)
++|++|++++|......+.. ....+++|+.|++++|.--..
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~---------------------------------~~~~l~~L~~L~l~~n~l~~~------ 440 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQS---------------------------------PFQNLHLLKVLNLSHSLLDIS------ 440 (606)
T ss_dssp TTCSEEECTTCCEECCTTCC---------------------------------TTTTCTTCCEEECTTCCCBTT------
T ss_pred ccCCeEECCCCcCCCcccch---------------------------------hhhCcccCCEEECCCCccCCc------
Confidence 55666666554321111100 000112233333333211000
Q ss_pred cchhhhccccCCCCCCCceEeeccChhhHH---HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccc
Q 002156 685 LPATLESLEVGNLPPSLKSLGVFECSKLES---IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLV 761 (959)
Q Consensus 685 ~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~ 761 (959)
.+.. ++.+ ++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|....
T Consensus 441 ~~~~-----~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 441 SEQL-----FDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CTTT-----TTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CHHH-----HhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 0000 1122 5788888888877652 22568899999999999999988889999999999999999998888
Q ss_pred ccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCc
Q 002156 762 SFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 762 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
..|..+..+++| +|++++|++.+..|..+..+++|+.|++++|++....+
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 888889999999 99999999998888889999999999999999875544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=362.06 Aligned_cols=287 Identities=16% Similarity=0.075 Sum_probs=164.9
Q ss_pred ceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccccc
Q 002156 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 553 (959)
Q Consensus 474 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 553 (959)
.+|+.+++++|.+.. .....+..+++|+.|+++++ .++.+....+. .+++|++|++++|.+.+..|..+.
T Consensus 266 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYN-KINKIADEAFY--------GLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp SCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESC-CCCEECTTTTT--------TCSSCCEEEEESCCCSCCCSCSCS
T ss_pred CCccEEECCCCcccc-cChhhhhcCCCCCEEECCCC-cCCCCChHHhc--------CCCCCCEEECCCCCCCccCHHHhc
Confidence 455556666655432 22334455666666666653 44444332211 125677777777776666666677
Q ss_pred CCCCcceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCcc
Q 002156 554 SLSSLREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLK 631 (959)
Q Consensus 554 ~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 631 (959)
.+++|++|++++|.. ..++ .+..+++|++|++++|.... + ..+++|+.|++++|. +..++. ...+++
T Consensus 336 ~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~-i------~~~~~L~~L~l~~N~-l~~l~~--~~~~l~ 404 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTT-I------HFIPSIPDIFLSGNK-LVTLPK--INLTAN 404 (844)
T ss_dssp SCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCCSCC-C------SSCCSCSEEEEESCC-CCCCCC--CCTTCC
T ss_pred CCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCCCCc-c------cCCCCcchhccCCCC-cccccc--cccccc
Confidence 777777777777743 3333 24556777777777776432 2 235667777776643 223321 122333
Q ss_pred EEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChh
Q 002156 632 QLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSK 711 (959)
Q Consensus 632 ~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~ 711 (959)
.++++++ +++.++. +. .++.+ ++|++|++++|.+
T Consensus 405 ~L~ls~N-~l~~l~~---------------------------------------~~-----~~~~l-~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 405 LIHLSEN-RLENLDI---------------------------------------LY-----FLLRV-PHLQILILNQNRF 438 (844)
T ss_dssp EEECCSC-CCCSSTT---------------------------------------HH-----HHTTC-TTCCEEEEESCCC
T ss_pred eeecccC-ccccCch---------------------------------------hh-----hhhcC-CccceeeCCCCcc
Confidence 3333331 1111110 00 01122 4667777776665
Q ss_pred hHHHHH-hhcCCCCccEEeecccCCC-----cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcC
Q 002156 712 LESIAE-RLDNNTSLEIISIGSCGNL-----KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLE 785 (959)
Q Consensus 712 ~~~~~~-~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 785 (959)
.+..+. .+..+++|+.|++++|.+. +..+..+..+++|++|++++|......|..+..+++|++|++++|++.+
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 432221 2445677777777777664 2334556777888888888876555555566777888888888887766
Q ss_pred ccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 786 ALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 786 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+..+. ++|+.|++++|.+.+..|..+ ++|+.|++++|+..
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 5555554 678888888888877777543 46778888887644
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=356.96 Aligned_cols=106 Identities=18% Similarity=0.061 Sum_probs=72.1
Q ss_pred CCCceeEEEecCCCCccc-cccccccCcccEEeccCC-CCccc-chhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 87 KLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGT-HIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
-.++|++|+|++|.|+.+ |.+|.++++|++|+|++| .+..+ |..|+++++|++|+|++|......|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 346777777777777766 567777777888888777 34456 566777777888887775444444666777777788
Q ss_pred eecCCCCcccccccc--cccccCCceeceEE
Q 002156 164 HNNSNTDSLEEMPLG--IGKLTCLQTLCNFV 192 (959)
Q Consensus 164 L~l~~~~~~~~~p~~--i~~L~~L~~L~~~~ 192 (959)
|++++|.....+|.. ++++++|++|++..
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 877777733334443 67777777765433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=343.08 Aligned_cols=271 Identities=18% Similarity=0.097 Sum_probs=176.1
Q ss_pred ccceEEEecC-CCCCCccccccCCCCcceeeeccCCCcccCCC-CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 533 RLEYLTLSGC-QGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 533 ~L~~L~L~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
.++.++++++ ...+..|..+..+++|++|++++|... .+|. +..+ +|++|++++|... .+|. ..+++|++|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEE
Confidence 4677777777 455566777888888888888888443 4553 3444 7888888888754 4443 355677777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.....++. ..+
T Consensus 331 ~l~~n~~~~~~~~------------------------------------~~~---------------------------- 346 (570)
T 2z63_A 331 TFTSNKGGNAFSE------------------------------------VDL---------------------------- 346 (570)
T ss_dssp EEESCBSCCBCCC------------------------------------CBC----------------------------
T ss_pred eCcCCcccccccc------------------------------------ccC----------------------------
Confidence 7776442111110 001
Q ss_pred ccccCCCCCCCceEeeccChhhHHH--HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESI--AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGG 767 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~ 767 (959)
++|++|++++|...... +..+..+++|++|++++|...+..+. +..+++|++|++++|......| ..+
T Consensus 347 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 347 --------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp --------TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred --------CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 45666666665544322 45566777888888877766554443 7778888888888876555444 356
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCC-CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL-PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
..+++|++|++++|.+.+..|..+.++++|+.|++++|.+. +.+|..+..+++|++|++++|......+ ..+..+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l 493 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSL 493 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh----hhhhcc
Confidence 67778888888888777777777777888888888888776 4577777777888888888775332111 234445
Q ss_pred CCccEEEEcccCCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCC
Q 002156 847 SSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
++|++|++++ +.+..+|+ .+..+++|++|++++|+.-...|
T Consensus 494 ~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 494 SSLQVLNMAS----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCS----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCEEeCCC----------------------CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 5555555554 35565554 57788888888888877554444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=345.05 Aligned_cols=247 Identities=16% Similarity=0.138 Sum_probs=157.7
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|++|++++|.+. .+|..+..+ +|++|++++|... .+|. ..+++|++|++++|......+. ..+++|++|+
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEE
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc----ccCCCCCEEe
Confidence 45556666555543 355555555 6666666666433 4443 3556666777766665444332 3556666666
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|.. ..... .+.....+++|+.|++++|.-... +..
T Consensus 354 l~~n~l-~~~~~-------------------------------~~~~~~~~~~L~~L~l~~n~l~~~-------~~~--- 391 (570)
T 2z63_A 354 LSRNGL-SFKGC-------------------------------CSQSDFGTTSLKYLDLSFNGVITM-------SSN--- 391 (570)
T ss_dssp CCSSCC-BEEEE-------------------------------EEHHHHTCSCCCEEECCSCSEEEE-------EEE---
T ss_pred CcCCcc-Ccccc-------------------------------ccccccccCccCEEECCCCccccc-------ccc---
Confidence 666431 11100 000011122333333333321110 000
Q ss_pred cccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccc-cccCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNL-VSFPEGGLP 769 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~ 769 (959)
++.+ ++|++|++++|...+..+ ..+..+++|++|++++|...+..|..+..+++|++|++++|... ..+|..+..
T Consensus 392 --~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 392 --FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp --EETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred --cccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 1111 477777777777665544 45778888888888888887777888888888888888888665 357778888
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
+++|++|++++|++.+..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888888888888877788888888888888888888877777778888888888888864
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=331.88 Aligned_cols=210 Identities=19% Similarity=0.157 Sum_probs=155.1
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhhHhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..++|..+. ++|++|++++|.++.+ |..|.++++|++|+|++|+|..+| ..|+++++|++|++++|......|..|
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 456676654 7899999999999887 678999999999999999998875 678999999999999964433344459
Q ss_pred hcccccceeecCCCCcccc--cccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhcc
Q 002156 156 GNLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 233 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (959)
+++++|++|++++|. +.. +|..++++++|++|++..+... .......+
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~ 144 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDF 144 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTT
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhh
Confidence 999999999999998 664 4567899999999876554311 01111236
Q ss_pred CCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCC
Q 002156 234 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTAL 313 (959)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~ 313 (959)
.++++|++|++++|.... ..+..+..+++|++|+++++....+|.++.. .+++|++|++++|.+.+..
T Consensus 145 ~~l~~L~~L~L~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp TTCCEEEEEEEEETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCC
T ss_pred hcccccCeeeccCCcccc-----------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCcccccc
Confidence 677888888888887642 2335667778888889888887777766532 3788999999988876531
Q ss_pred ----CCCCCCCCcCeeEecCCC
Q 002156 314 ----PSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 314 ----~~l~~l~~L~~L~L~~~~ 331 (959)
+....+++|+.|+++++.
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCE
T ss_pred ccccchhhhhhcccceeccccc
Confidence 234556778888887753
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=322.34 Aligned_cols=255 Identities=17% Similarity=0.060 Sum_probs=184.0
Q ss_pred ccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc-----cCCCCcceeeeccCCC
Q 002156 494 LLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS-----LSLSSLREIVIYKCSS 568 (959)
Q Consensus 494 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~ 568 (959)
.+..+++|+.|+++++ .+........... . ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|..
T Consensus 215 ~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNI-ETTWNSFIRILQL---V--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp GGGGCTTCCEEEEEEE-EEEHHHHHHHHHH---H--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred hhccccchhhcccccc-ccCHHHHHHHHHH---h--hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 3456778888888774 2222111111111 0 12689999999999888888877 8889999999998865
Q ss_pred cccCCC--CcC---CCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCccc
Q 002156 569 LVSFPE--VAL---PSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRT 643 (959)
Q Consensus 569 l~~~~~--~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~ 643 (959)
.+|. +.. .++|+.|++++|........ ..+++|++|++++|..-...+ .
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~-----~--------------- 342 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP----SKISPFLHLDFSNNLLTDTVF-----E--------------- 342 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC----SSCCCCCEEECCSSCCCTTTT-----T---------------
T ss_pred --ecchhhhhcccccCceeEEEcCCCccccccch----hhCCcccEEEeECCccChhhh-----h---------------
Confidence 4442 111 15688888888875432210 356677777777643211000 0
Q ss_pred ccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcC
Q 002156 644 LTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDN 721 (959)
Q Consensus 644 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~ 721 (959)
.++.+ ++|++|++++|.+.+ .+|..++.
T Consensus 343 -------------------------------------------------~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 343 -------------------------------------------------NCGHL-TELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp -------------------------------------------------TCCCC-SSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred -------------------------------------------------hhccC-CCCCEEEccCCccCccccchHHHhh
Confidence 01112 588999999998775 67888999
Q ss_pred CCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcccee
Q 002156 722 NTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQEL 800 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 800 (959)
+++|++|++++|.+.+.+|. .+..+++|++|++++|...+.+|..+. ++|++|++++|++. .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 99999999999998885665 478899999999999987777766543 69999999999876 778878899999999
Q ss_pred eeccCCCCCCCccc-CCCCCCcceEEccCCchhhh
Q 002156 801 RIGRGVELPSLEEE-DGLPTNLQSLDIWGNIEIWK 834 (959)
Q Consensus 801 ~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~ 834 (959)
++++|.+. .+|.. +..+++|++|++++|+...+
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 99999998 56655 88899999999999986543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=340.36 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=87.9
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccc----------------------------------
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL---------------------------------- 104 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---------------------------------- 104 (959)
.+++.|.+.++. +.+.+|++++++++|++|+|++|.+..-
T Consensus 81 ~~V~~L~L~~~~------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSC------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEecCcc------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 467777776643 3677888888888888888888854111
Q ss_pred ccccc-------------------ccCcccEEecc--CCCCcccchhhhccccccEEeccCcchhhh-------------
Q 002156 105 PDSIG-------------------DLRYLRYLNLS--GTHIRALPESVNKLYNLHTLLLEDCRELKK------------- 150 (959)
Q Consensus 105 p~~~~-------------------~l~~L~~L~L~--~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~------------- 150 (959)
|..+. ....++.+.+. +|+++.+|+.++++++|++|+|++|. +..
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccc
Confidence 11111 01112222222 45677788889999999999999865 544
Q ss_pred -----hhHhhh--cccccceeecCCCCcccccccccccccCCceece
Q 002156 151 -----LCADMG--NLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 151 -----lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
+|..++ ++++|++|++++|...+.+|..++++++|++|++
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 888888 9999999999998877788888888888888754
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=320.52 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred eeEEEecCCCCccccccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCC
Q 002156 91 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNT 169 (959)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 169 (959)
..+.|++++.++.+|..+. ++|++|+|++|+++.+ |..++++++|++|++++|......|..|+++++|++|++++|
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3346788889999998765 7899999999999987 578999999999999996444444567999999999999999
Q ss_pred Ccccccccc-cccccCCcee
Q 002156 170 DSLEEMPLG-IGKLTCLQTL 188 (959)
Q Consensus 170 ~~~~~~p~~-i~~L~~L~~L 188 (959)
. +..+|.. |+++++|++|
T Consensus 85 ~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 85 H-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp C-CCSCCHHHHTTCTTCCEE
T ss_pred c-cCccCHHHhccCCCCcEE
Confidence 8 6665543 5444444443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=332.93 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=97.6
Q ss_pred CCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCC--------CCCccEEEecCCcCcCccccccC
Q 002156 721 NNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP--------CAKLMRLEIYGCERLEALPKGLH 792 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~ 792 (959)
.+++|++|++++|.+.+..+..+..+++|++|++++|... .+|..... +++|++|++++|.+. .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 3445555555555554322223344666666666666433 45543322 226777777777655 5555555
Q ss_pred --CCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh--hhhhccCCCCCCCccEEEEcccCCCcccccCCC
Q 002156 793 --NLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS--MIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPA 868 (959)
Q Consensus 793 --~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 868 (959)
.+++|+.|++++|.+.+ +|..+..+++|++|++++|+.+... ....+..+..+++|
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L------------------- 568 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL------------------- 568 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-------------------
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-------------------
Confidence 67777777777777765 6666666777777777554311000 00001122233333
Q ss_pred CCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCc----------cccceeeccCChhHH
Q 002156 869 SLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLP----------SSLLRLWIEGCPLIE 929 (959)
Q Consensus 869 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~----------~~L~~L~l~~c~~l~ 929 (959)
+.|++++ +.++.+|..+. ++|++|++++|+.. .+...++. ...+..++++|+.++
T Consensus 569 --~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 569 --TQLQIGS-NDIRKVNEKIT--PNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp --CEEECCS-SCCCBCCSCCC--TTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred --CEEECCC-CcCCccCHhHh--CcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 3344444 35577887655 78999999987543 33322221 122445677888653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=331.45 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCcccchhhhccccccEEeccCcchhh-----------------hhhHhhh--cccccceeecCCCCcccccccccccc
Q 002156 122 THIRALPESVNKLYNLHTLLLEDCRELK-----------------KLCADMG--NLIKLHHHNNSNTDSLEEMPLGIGKL 182 (959)
Q Consensus 122 n~i~~lp~~i~~L~~L~~L~L~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 182 (959)
|+++.+|..++++++|++|+|++|.... .+|..++ ++++|++|++++|...+.+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666688888999999999998865433 2888877 89999999998888778888888888
Q ss_pred cCCceece
Q 002156 183 TCLQTLCN 190 (959)
Q Consensus 183 ~~L~~L~~ 190 (959)
++|++|++
T Consensus 515 ~~L~~L~L 522 (876)
T 4ecn_A 515 PELQSLNI 522 (876)
T ss_dssp SSCCEEEC
T ss_pred CCCCEEEC
Confidence 88888754
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=328.03 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=118.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
++++.+++++|......+..+..+++|++|++++|...+ ..|..+..+++|++|+|++|...+..|..+..+++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 578888888888887778888899999999999987655 4688899999999999999977666778888999999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCchhh
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNIEIW 833 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 833 (959)
|++|++.+..|..++++++|++|++++|++.+..|..+..+ ++|++|++++|+...
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999888888889999999999999999999888888877 689999999998654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=317.30 Aligned_cols=450 Identities=16% Similarity=0.118 Sum_probs=238.5
Q ss_pred ccccccCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHhhh
Q 002156 79 YSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCADMG 156 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (959)
..+|..+. ++|++|++++|.++.++ ..|.++++|++|+|++|+|+.+ |..|+++++|++|++++| .+..+|..
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 34554444 56666666666666553 4566666666666666666655 556666666666666663 45556554
Q ss_pred cccccceeecCCCCcccc--cccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccC
Q 002156 157 NLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLD 234 (959)
Q Consensus 157 ~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (959)
.+++|++|++++|. +.. +|..++++++|++|++..
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~------------------------------------------ 124 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLST------------------------------------------ 124 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEE------------------------------------------
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecC------------------------------------------
Confidence 56666666666666 443 344566666665554433
Q ss_pred CCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCc--ceEEEeccCC---CCCCccccCCCCC-CccEEEEecCC
Q 002156 235 GKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNL--EQFCIKGYEG---MKFPTWLGDSSFS-NLVTLKFKNCG 308 (959)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~ 308 (959)
|.+.. ..+..+++| ++|+++++.. ...|.++.. +. +...+++++|.
T Consensus 125 ------------n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 125 ------------THLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNK 176 (520)
T ss_dssp ------------SSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSS
T ss_pred ------------cccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCc
Confidence 22210 001112222 4444444433 233444322 22 23345556666
Q ss_pred CCCCCC--CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceec
Q 002156 309 MCTALP--SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELH 386 (959)
Q Consensus 309 ~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 386 (959)
+.+.++ .+..+++|+.|++++|..... +. .+.. .++ .++.+++|++|+
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~-----------~~~~-----~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNK-------------CS-----------YFLS-----ILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTT-------------TH-----------HHHH-----HHH-GGGGCTTCCEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccc-------------cc-----------eeec-----chh-hhccccchhhcc
Confidence 555444 455667777777766531000 00 0000 011 234566677777
Q ss_pred cccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCC
Q 002156 387 ILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPL 466 (959)
Q Consensus 387 l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (959)
+++| .+++..+.. +. .....++|+.|++++|. +.|.+
T Consensus 227 l~~~-~l~~~~~~~--------------~~-~~~~~~~L~~L~l~~n~---------------------------l~~~~ 263 (520)
T 2z7x_B 227 LNNI-ETTWNSFIR--------------IL-QLVWHTTVWYFSISNVK---------------------------LQGQL 263 (520)
T ss_dssp EEEE-EEEHHHHHH--------------HH-HHHHTSSCSEEEEEEEE---------------------------EESCC
T ss_pred cccc-ccCHHHHHH--------------HH-HHhhhCcccEEEeeccc---------------------------ccCcc
Confidence 7663 232110000 00 00013467777777665 55566
Q ss_pred CCCC-----CCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEec
Q 002156 467 KPQL-----PKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 467 ~~~~-----~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
|..+ .++++|+.++++.+.+ .++.......+. .++|+.|++++
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~---------------------------~~p~~~~~~~~~-----~~~L~~L~l~~ 311 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF---------------------------GFPQSYIYEIFS-----NMNIKNFTVSG 311 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC---------------------------CSCTHHHHHHHH-----TCCCSEEEEES
T ss_pred ccchhhcccccCceeEeccccccce---------------------------ecchhhhhcccc-----cCceeEEEcCC
Confidence 6666 6777777777765543 111111101000 04577777777
Q ss_pred CCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCc--ccChhhhcCCCCCccEEEEecCCCC
Q 002156 542 CQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALK--SLPEAWMCDTNSSLEILTISSCHSL 618 (959)
Q Consensus 542 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~c~~l 618 (959)
|.+.... ....+++|++|++++|.....+| .+..+++|++|++++|...+ .+|..+ ..+++|++|++++|...
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVS 387 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCB
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCC
Confidence 7764322 12578888888888886655444 46678888888888887654 333434 56777777777774321
Q ss_pred ccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCC
Q 002156 619 TYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLP 698 (959)
Q Consensus 619 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp 698 (959)
..++.
T Consensus 388 ~~l~~--------------------------------------------------------------------------- 392 (520)
T 2z7x_B 388 YDEKK--------------------------------------------------------------------------- 392 (520)
T ss_dssp CCGGG---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
..+..+++|++|++++|.+.+.+|..+. ++|++|++++|. ++.+|..+..+++|++|++
T Consensus 393 ------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 393 ------------------GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp ------------------CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEEC
T ss_pred ------------------chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEEC
Confidence 0122334444444445554444444332 566666666663 3356655556666777777
Q ss_pred cCCcCcCcccc-ccCCCCccceeeeccCCCCCC
Q 002156 779 YGCERLEALPK-GLHNLTSLQELRIGRGVELPS 810 (959)
Q Consensus 779 ~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~ 810 (959)
++|++.. +|. .+..+++|++|++++|++...
T Consensus 452 ~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 7766553 333 366677777777777776644
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=318.80 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=104.5
Q ss_pred cccEEeccccCCCCCCcccccccc-cCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccch-hhhcccc
Q 002156 60 HLRTFLPVTLSNSSRGHLAYSILP-KLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALPE-SVNKLYN 136 (959)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~ 136 (959)
.++.|.+..+. ...+++ +|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|+|+.+|. .|+++++
T Consensus 53 ~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 68999988765 556664 6799999999999999999985 579999999999999999999974 5799999
Q ss_pred ccEEeccCcchhhhhhHh-hhcccccceeecCCCCcccc--cccccccccCCceeceEEe
Q 002156 137 LHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEE--MPLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 137 L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~ 193 (959)
|++|++++| .+..+|.. |++|++|++|++++|. +.. +|..++.+++|++|++..+
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 999999995 56667654 8999999999999998 654 4566888999999865433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=309.59 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=111.0
Q ss_pred CCCccccccccccCcccEEeccCCCCcc------------------cchhhh--ccccccEEeccCcchhhhhhHhhhcc
Q 002156 99 YHIFELPDSIGDLRYLRYLNLSGTHIRA------------------LPESVN--KLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 99 ~~i~~lp~~~~~l~~L~~L~L~~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
|.++.+|..|+++++|++|+|++|+++. +|+.++ ++++|++|+|++|.....+|..|++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444488899999999999999999998 899987 99999999999988888999999999
Q ss_pred cccceeecCCCC-ccc-cccccccccc-CCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCC
Q 002156 159 IKLHHHNNSNTD-SLE-EMPLGIGKLT-CLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDG 235 (959)
Q Consensus 159 ~~L~~L~l~~~~-~~~-~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (959)
++|++|++++|. ... .+|.++++++ . +..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~------------------------------------------------~~~ 546 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADD------------------------------------------------EDT 546 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHC------------------------------------------------TTT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhc------------------------------------------------ccc
Confidence 999999999997 333 5888787654 1 111
Q ss_pred CCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCc--cccCCCCCCccEEEEecCCCCCCC
Q 002156 236 KKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPT--WLGDSSFSNLVTLKFKNCGMCTAL 313 (959)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~~ 313 (959)
+++|++|++++|....+|. .+.. +++|+.|++++|.+. .+
T Consensus 547 -----------------------------------l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 547 -----------------------------------GPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp -----------------------------------TTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BC
T ss_pred -----------------------------------cCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cc
Confidence 2344444555555556666 5543 777777777777776 55
Q ss_pred CCCCCCCCcCeeEecCCC
Q 002156 314 PSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 314 ~~l~~l~~L~~L~L~~~~ 331 (959)
|.++.+++|+.|++++|.
T Consensus 589 p~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCCCTTSEESEEECCSSC
T ss_pred hhhcCCCcceEEECcCCc
Confidence 677777788888887764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=302.66 Aligned_cols=222 Identities=16% Similarity=0.060 Sum_probs=155.9
Q ss_pred cccceEEEecCCCCCCccccc-----cCCCCcceeeeccCCCcccCCC-----CcCCCCCCeEEEecCCCCcccChhhhc
Q 002156 532 CRLEYLTLSGCQGLVKLPQSS-----LSLSSLREIVIYKCSSLVSFPE-----VALPSKLKKINIWHCDALKSLPEAWMC 601 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~ 601 (959)
++|++|++++|.+.+.+|..+ ..++.|+.+++..+.. .+|. ....++|++|++++|........
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---- 349 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCP---- 349 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCC----
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCc----
Confidence 589999999998887888766 5666666666666543 3331 00124577777777764322110
Q ss_pred CCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccc
Q 002156 602 DTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFS 681 (959)
Q Consensus 602 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 681 (959)
..+++|++|++++|..-...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~----------------------------------------------------------- 370 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF----------------------------------------------------------- 370 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-----------------------------------------------------------
T ss_pred cCCCCceEEECCCCccccchh-----------------------------------------------------------
Confidence 345566666666543111000
Q ss_pred cCCcchhhhccccCCCCCCCceEeeccChhhH--HHHHhhcCCCCccEEeecccCCCcccCc-cccCCCCcceeeccccc
Q 002156 682 KNELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAERLDNNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCG 758 (959)
Q Consensus 682 ~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 758 (959)
.. ++.+ ++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.
T Consensus 371 -----~~-----~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 371 -----QG-----CSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp -----TT-----CCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred -----hh-----hccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 00 1111 578888888887765 6678889999999999999988875554 47789999999999997
Q ss_pred cccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCccc-CCCCCCcceEEccCCchhh
Q 002156 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEE-DGLPTNLQSLDIWGNIEIW 833 (959)
Q Consensus 759 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 833 (959)
..+.+|..+. ++|++|++++|++. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|+...
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 7666665443 68999999999865 67777779999999999999998 56655 8889999999999997554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=304.87 Aligned_cols=471 Identities=17% Similarity=0.083 Sum_probs=262.4
Q ss_pred cCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCccc-chhhhcc
Q 002156 57 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRAL-PESVNKL 134 (959)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L 134 (959)
.+...+++.+.++. ...+|..+. ++|++|++++|.++.+| .+|.++++|++|+|++|+|+.+ |..|+++
T Consensus 29 ~~~~~~~l~ls~~~-------L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRN-------LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSC-------CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCC-------CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 44445777666544 455666554 68888888888888774 5788888888888888888877 5678888
Q ss_pred ccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccc--cccccccCCceeceEEeccCCCCChhhhhhhhhccc
Q 002156 135 YNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMP--LGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG 212 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (959)
++|++|++++| .+..+|.. .+++|++|++++|. +..+| ..++++++|++|++..+.... ..
T Consensus 100 ~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~------------ 162 (562)
T 3a79_B 100 QDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD------------ 162 (562)
T ss_dssp TTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TT------------
T ss_pred CCCCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cc------------
Confidence 88888888884 56677766 78888888888887 66654 457777777777543322110 00
Q ss_pred ceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcccc
Q 002156 213 ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292 (959)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 292 (959)
...+..+ +|+.|++++|.... ....|.++.
T Consensus 163 -----------------~~~l~~L-~L~~L~L~~n~l~~--------------------------------~~~~~~~l~ 192 (562)
T 3a79_B 163 -----------------LLPVAHL-HLSCILLDLVSYHI--------------------------------KGGETESLQ 192 (562)
T ss_dssp -----------------TGGGTTS-CEEEEEEEESSCCC--------------------------------CSSSCCEEE
T ss_pred -----------------hhhhhhc-eeeEEEeecccccc--------------------------------cccCccccc
Confidence 0001111 22444444433200 011233322
Q ss_pred CCCCCCccEEEEecCCCCCCCC--CCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 293 DSSFSNLVTLKFKNCGMCTALP--SMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 293 ~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
.-....+ .+++++|.+...++ .+..+++|+.|+++++... +..+...
T Consensus 193 ~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--------------------------~~~l~~~---- 241 (562)
T 3a79_B 193 IPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN--------------------------CQRLMTF---- 241 (562)
T ss_dssp ECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT--------------------------HHHHHHH----
T ss_pred ccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccc--------------------------cchHHHH----
Confidence 1001111 34555555544433 3445666666666654210 0000000
Q ss_pred CCCCccccccccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCc
Q 002156 371 SSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNS 450 (959)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 450 (959)
...+..+++|+.+++.++ .+.+.... .+. .....++|++|++++|.
T Consensus 242 --~~~l~~l~~L~~L~L~~~-~l~~~~~~--------------~~~-~~~~~~~L~~L~l~~n~---------------- 287 (562)
T 3a79_B 242 --LSELTRGPTLLNVTLQHI-ETTWKCSV--------------KLF-QFFWPRPVEYLNIYNLT---------------- 287 (562)
T ss_dssp --HHHHHSCSSCEEEEEEEE-EECHHHHH--------------HHH-HHHTTSSEEEEEEEEEE----------------
T ss_pred --HHHHhccCcceEEEecCC-cCcHHHHH--------------HHH-HhhhcccccEEEEeccE----------------
Confidence 001223445555555442 11100000 000 00112356666666655
Q ss_pred ceecccCCcceecCCCCCCC-----CCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHh
Q 002156 451 VVCRDASNQVFLVGPLKPQL-----PKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQ 525 (959)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~-----~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 525 (959)
+.|.+|..+ ++++.|+.+++..+.+ .++.........
T Consensus 288 -----------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~---------------------------~~p~~~~~~~~~ 329 (562)
T 3a79_B 288 -----------ITERIDREEFTYSETALKSLMIEHVKNQVF---------------------------LFSKEALYSVFA 329 (562)
T ss_dssp -----------ECSCCCCCCCCCCSCSCCEEEEEEEEECCC---------------------------SSCHHHHHHHHH
T ss_pred -----------eeccccchhhhcccccchheehhhccccee---------------------------ecChhhhhhhhc
Confidence 445555554 6666666666654432 111111111100
Q ss_pred hhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcc--cChhhhcC
Q 002156 526 QLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKS--LPEAWMCD 602 (959)
Q Consensus 526 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 602 (959)
.++|++|++++|.+.... ....+++|++|++++|.....+| .+..+++|++|++++|...+. ++..+ .
T Consensus 330 -----~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~ 400 (562)
T 3a79_B 330 -----EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--K 400 (562)
T ss_dssp -----TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--T
T ss_pred -----cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh--c
Confidence 046888888887764321 12578888888888886665444 466788888888888875432 22223 5
Q ss_pred CCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 603 TNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
.+++|++|++++|.....++.
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~----------------------------------------------------------- 421 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYD----------------------------------------------------------- 421 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSS-----------------------------------------------------------
T ss_pred CCCCCCEEECCCCcCCCccCh-----------------------------------------------------------
Confidence 667777777776431110110
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS 762 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~ 762 (959)
..+..+++|++|++++|.+.+.+|..+. ++|++|++++| .++.
T Consensus 422 ----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 422 ----------------------------------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp ----------------------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC
T ss_pred ----------------------------------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc
Confidence 0123344555555556665555554432 67888888887 4556
Q ss_pred cCCCCCCCCCccEEEecCCcCcCccccc-cCCCCccceeeeccCCCCCCCc
Q 002156 763 FPEGGLPCAKLMRLEIYGCERLEALPKG-LHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 763 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
+|..+..+++|++|++++|++.. +|.. +..+++|+.|++++|++....+
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77766678888888888888764 4444 7888888888888888775544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=286.94 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCc-ccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIR-ALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
+.++|++|++++|.++.+|++|+++++|++|++++|++. .+|.+++++.+|+++++++|.. .++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 457788888888888888888888888888888888776 6788888888888777777531 5678888
Q ss_pred cCCCCccccccc
Q 002156 166 NSNTDSLEEMPL 177 (959)
Q Consensus 166 l~~~~~~~~~p~ 177 (959)
+++|. ++.+|.
T Consensus 78 l~~~~-l~~lp~ 88 (454)
T 1jl5_A 78 LNNLG-LSSLPE 88 (454)
T ss_dssp CTTSC-CSCCCS
T ss_pred ecCCc-cccCCC
Confidence 88887 666654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-28 Score=270.55 Aligned_cols=368 Identities=22% Similarity=0.218 Sum_probs=217.2
Q ss_pred ecCCCCCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEec
Q 002156 462 LVGPLKPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSG 541 (959)
Q Consensus 462 ~~~~~~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 541 (959)
+.|.+|..++++.+|+.+++..+. ...+++|++++| .++.++. .+++|++|++++
T Consensus 46 ~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~L~l~~~-~l~~lp~------------~~~~L~~L~l~~ 100 (454)
T 1jl5_A 46 WERNAPPGNGEQREMAVSRLRDCL------------DRQAHELELNNL-GLSSLPE------------LPPHLESLVASC 100 (454)
T ss_dssp HHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSEEECTTS-CCSCCCS------------CCTTCSEEECCS
T ss_pred ccccCCcccccchhcchhhhhhhh------------ccCCCEEEecCC-ccccCCC------------CcCCCCEEEccC
Confidence 445566666666666555443321 145666777764 3554432 126778888877
Q ss_pred CCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccc
Q 002156 542 CQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYF 621 (959)
Q Consensus 542 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 621 (959)
|.+.+ +|.. +++|++|++++|. ++.++.. +++|++|++++|...+ +| .+ ..+++|++|++++|. ++.+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~L~~L~L~~n~l~~-lp-~~--~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNN-LKALSDL--PPLLEYLGVSNNQLEK-LP-EL--QNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSC-CSCCCSC--CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSC-CSCC
T ss_pred CcCCc-cccc---cCCCcEEECCCCc-cCcccCC--CCCCCEEECcCCCCCC-Cc-cc--CCCCCCCEEECCCCc-Cccc
Confidence 77765 5542 4678888887773 3344432 3678888888876544 55 33 677888888888764 4444
Q ss_pred cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCC
Q 002156 622 GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSL 701 (959)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L 701 (959)
+. .+.+|+.|+++++ +++.++ ....+++|+.|++++|.-- .+| ..|++|
T Consensus 169 p~--~~~~L~~L~L~~n-~l~~l~------------~~~~l~~L~~L~l~~N~l~-------~l~---------~~~~~L 217 (454)
T 1jl5_A 169 PD--LPPSLEFIAAGNN-QLEELP------------ELQNLPFLTAIYADNNSLK-------KLP---------DLPLSL 217 (454)
T ss_dssp CC--CCTTCCEEECCSS-CCSSCC------------CCTTCTTCCEEECCSSCCS-------SCC---------CCCTTC
T ss_pred CC--CcccccEEECcCC-cCCcCc------------cccCCCCCCEEECCCCcCC-------cCC---------CCcCcc
Confidence 42 3356777777665 343333 2345677888888775321 111 223688
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGC 781 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 781 (959)
++|++++|... .+| .++.+++|++|++++|.+.+ +|.. +++|++|++++|. +..+|.. .++|++|++++|
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 99999988766 556 48889999999998887664 4442 4789999999885 4446653 368999999999
Q ss_pred cCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCc
Q 002156 782 ERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDM 861 (959)
Q Consensus 782 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 861 (959)
.+.+ +|.. .++|+.|++++|.+.+ ++. ..++|++|++++|.... ....+++|++|++++|....
T Consensus 288 ~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~--------lp~~~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 288 IFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE--------LPALPPRLERLIASFNHLAE 351 (454)
T ss_dssp CCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC--------CCCCCTTCCEEECCSSCCSC
T ss_pred ccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc--------ccccCCcCCEEECCCCcccc
Confidence 8665 2211 2688899999988774 221 23588999999886432 11236889999998876554
Q ss_pred ccccCCCCCceEeeccCCCCc--ccccccCCC-------------CCCcEEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 862 VSFPLPASLTSLEISFFPNLE--RLSSSIVDL-------------QILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 862 ~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l-------------~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
... .+++|+.|++++|.... .+|.++..+ ++|++|++++|+ ++.+|. +|++++.|.+.+|.
T Consensus 352 lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 352 VPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp CCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------------------
T ss_pred ccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc--chhhHhheeCcCcc
Confidence 444 67889999999865444 567777766 889999999865 555544 67889999988875
Q ss_pred h
Q 002156 927 L 927 (959)
Q Consensus 927 ~ 927 (959)
.
T Consensus 428 ~ 428 (454)
T 1jl5_A 428 V 428 (454)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=266.26 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=79.2
Q ss_pred cccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccc
Q 002156 80 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLI 159 (959)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 159 (959)
..+..+.++++|++|++++|.++.+| .++.+++|++|+|++|+++.+| ++.+++|++|++++| .+..+| +++++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~ 106 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT 106 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred ccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence 34456678889999999999888887 6888999999999999988886 888899999999885 466665 88888
Q ss_pred ccceeecCCCCcccccccccccccCCcee
Q 002156 160 KLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 160 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+|++|++++|. ++.+| ++++++|++|
T Consensus 107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TCCEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred cCCEEECCCCc-CCeec--CCCCCcCCEE
Confidence 89999998887 66654 5556555555
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=267.70 Aligned_cols=378 Identities=13% Similarity=0.072 Sum_probs=200.9
Q ss_pred eeccccCccccCCCCCCCCCccEEEEeccCCcc---cccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcc
Q 002156 384 ELHILRCSKLKGTFPEHLPALEMLVIEGCEELS---VSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQV 460 (959)
Q Consensus 384 ~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 460 (959)
.++.++ ..++ .+|...++|++|++++|.... ..+..+++|+.|+++++..
T Consensus 14 ~~~c~~-~~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~------------------------- 66 (455)
T 3v47_A 14 NAICIN-RGLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP------------------------- 66 (455)
T ss_dssp EEECCS-SCCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-------------------------
T ss_pred ccCcCC-CCcc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-------------------------
Confidence 455555 3565 777755778888888875432 2456677777777777752
Q ss_pred eecCCC-CCCCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCccc-chhhhHHHHHhhhhhcccccceEE
Q 002156 461 FLVGPL-KPQLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQS-LVAEEEKDQQQQLCELSCRLEYLT 538 (959)
Q Consensus 461 ~~~~~~-~~~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~ 538 (959)
.+.+ +..|.++++|+.+++++|.+.. ..+..+..+++|++|++++| .++. ++... .....++|++|+
T Consensus 67 --~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~~~l~~L~~L~ 135 (455)
T 3v47_A 67 --GLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQC-NLDGAVLSGN-------FFKPLTSLEMLV 135 (455)
T ss_dssp --TCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEEECTTS-CCBTHHHHSS-------TTTTCTTCCEEE
T ss_pred --cceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEEeCCCC-CCCccccCcc-------cccCcccCCEEE
Confidence 2122 3346667777777777776532 22334456666777766664 2332 11110 001125666666
Q ss_pred EecCCCCCCcccc-ccCCCCcceeeeccCCCcccCCC-CcCC--CCCCeEEEecCCCCcccChhhh------cCCCCCcc
Q 002156 539 LSGCQGLVKLPQS-SLSLSSLREIVIYKCSSLVSFPE-VALP--SKLKKINIWHCDALKSLPEAWM------CDTNSSLE 608 (959)
Q Consensus 539 L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~------~~~l~~L~ 608 (959)
+++|.+.+..|.. +.++++|++|++++|......+. +..+ ++|+.|++++|......+..+. ...+++|+
T Consensus 136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp CCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred CCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceee
Confidence 6666665554543 55666666666666644333331 2221 4556666666654332211100 01334555
Q ss_pred EEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 609 ILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 609 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
+|++++|......+.. +. .....++|+.++++++......+....++..
T Consensus 216 ~L~Ls~n~l~~~~~~~-~~------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 216 TLDLSGNGFKESMAKR-FF------------------------------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EEECTTSCCCHHHHHH-HH------------------------------HHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred eEecCCCcccccchhh-hh------------------------------ccccccceeeEeeccccccccccchhhhccC
Confidence 5555554322211110 00 0001133444444443322211111111100
Q ss_pred hhccccCC-CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 689 LESLEVGN-LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 689 l~~~~~~~-lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
. ...+.. -+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|......|..+
T Consensus 265 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 265 D-NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp C-TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred c-ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 0 000000 01466777777766666666666667777777777766666666666667777777777665544445555
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 6666777777777766666566666677777777777766654444556666777777776653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=256.67 Aligned_cols=364 Identities=13% Similarity=0.051 Sum_probs=236.3
Q ss_pred ceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccccc
Q 002156 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 553 (959)
Q Consensus 474 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 553 (959)
++|+.+++++|.+.. .....+..+++|++|+++++.-...++...+. -+++|++|++++|.+.+..|..++
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--------GLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--------TCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECccccc--------ccccCCEEeCCCCccCccChhhcc
Confidence 678888899888743 33455678889999999886543344333221 127889999999888777788888
Q ss_pred CCCCcceeeeccCCCcccCC-C--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCc
Q 002156 554 SLSSLREIVIYKCSSLVSFP-E--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSL 630 (959)
Q Consensus 554 ~l~~L~~L~L~~~~~l~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 630 (959)
++++|++|++++|.....++ . +..+++|++|++++|...+..+..++ ..+++|++|++++|... .+....+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~l~--- 175 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFNKVK-SICEEDLL--- 175 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTCCBS-CCCTTTSG---
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCCccc-ccChhhhh---
Confidence 88999999998886544333 2 66788899999998887666665533 67888888888886422 21111100
Q ss_pred cEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccCh
Q 002156 631 KQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECS 710 (959)
Q Consensus 631 ~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~ 710 (959)
......|+.++++++.-.. .+...+.... .-.+... ++|++|++++|.
T Consensus 176 ----------------------------~l~~~~L~~L~l~~n~l~~--~~~~~~~~~~-~~~~~~~-~~L~~L~Ls~n~ 223 (455)
T 3v47_A 176 ----------------------------NFQGKHFTLLRLSSITLQD--MNEYWLGWEK-CGNPFKN-TSITTLDLSGNG 223 (455)
T ss_dssp ----------------------------GGTTCEEEEEECTTCBCTT--CSTTCTTHHH-HCCTTTT-CEEEEEECTTSC
T ss_pred ----------------------------ccccccccccccccCcccc--cchhhccccc-ccccccc-ceeeeEecCCCc
Confidence 0001234444444432111 0000000000 0000111 578999999999
Q ss_pred hhHHHHHhhcCC---CCccEEeecccCCCcccC----------cccc--CCCCcceeeccccccccccCCCCCCCCCccE
Q 002156 711 KLESIAERLDNN---TSLEIISIGSCGNLKILP----------SGLH--NLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775 (959)
Q Consensus 711 ~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~p----------~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (959)
+.+..|..+... ++|+.|++++|...+... ..+. ..++|++|++++|.....+|..+..+++|++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 888888776554 899999999886554321 1111 2357888888888766666777777788888
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|++|++++|....... ..+..+++|++|+++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLKELALD 379 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh----hhccccccccEEECC
Confidence 8888888777777777788888888888887776667777777888888888875422111 334555556655555
Q ss_pred ccCCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCC
Q 002156 856 GCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFP 909 (959)
Q Consensus 856 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 909 (959)
+ +.++.+|. .+..+++|++|++++|+.-...|
T Consensus 380 ~----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 T----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp S----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred C----------------------CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5 56777766 45788888888888877655554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=253.60 Aligned_cols=343 Identities=19% Similarity=0.264 Sum_probs=192.4
Q ss_pred CCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeec
Q 002156 87 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNN 166 (959)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (959)
.+++++.|+++++.++.+|. +..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 45667777777777776653 6677777777777777777655 777777777777774 4444544 777777777777
Q ss_pred CCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEEe
Q 002156 167 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 246 (959)
Q Consensus 167 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (959)
++|. ++.+|. ++++++|++|++..+.... . ..+..+++|++|++..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------------------------~-----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISD---------------------------I-----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECC---------------------------C-----GGGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCC---------------------------C-----hhhccCCcccEeecCC
Confidence 7776 666654 6666666666554332110 0 0134455555665542
Q ss_pred ccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeE
Q 002156 247 TRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLT 326 (959)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ 326 (959)
... ....+..+++|++|+++++....++. +. .+++|++|++++|.+.+..+ ++.+++|++|+
T Consensus 166 -~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 166 -QVT-------------DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELS 227 (466)
T ss_dssp -SCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred -ccc-------------CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEE
Confidence 111 01123445555555555555444432 21 24555555555554433222 34444455555
Q ss_pred ecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccCCCCccccccccceeccccCccccCCCCCCCCCccE
Q 002156 327 VRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGSSQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEM 406 (959)
Q Consensus 327 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~ 406 (959)
+++|.... . .....+++|++|++++| .++ .++
T Consensus 228 l~~n~l~~-------------------------------------~-~~l~~l~~L~~L~l~~n-~l~-~~~-------- 259 (466)
T 1o6v_A 228 LNGNQLKD-------------------------------------I-GTLASLTNLTDLDLANN-QIS-NLA-------- 259 (466)
T ss_dssp CCSSCCCC-------------------------------------C-GGGGGCTTCSEEECCSS-CCC-CCG--------
T ss_pred CCCCCccc-------------------------------------c-hhhhcCCCCCEEECCCC-ccc-cch--------
Confidence 44432100 0 01234555666666553 232 111
Q ss_pred EEEeccCCcccccCCCCCccEEEecCCCchhhhcccccCCCCCcceecccCCcceecCCCCCCCCCcceEEEeccCcccc
Q 002156 407 LVIEGCEELSVSVSRLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLPKLEELEIIDMKEQTY 486 (959)
Q Consensus 407 L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~l~l~~~~~ 486 (959)
.+..+++|+.|++++|. +
T Consensus 260 -----------~~~~l~~L~~L~l~~n~---------------------------------------------------l 277 (466)
T 1o6v_A 260 -----------PLSGLTKLTELKLGANQ---------------------------------------------------I 277 (466)
T ss_dssp -----------GGTTCTTCSEEECCSSC---------------------------------------------------C
T ss_pred -----------hhhcCCCCCEEECCCCc---------------------------------------------------c
Confidence 13445556666665554 2
Q ss_pred cccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccC
Q 002156 487 IWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKC 566 (959)
Q Consensus 487 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 566 (959)
.... .+..+++|+.|++++| .++.++. ...+++|+.|++++|.+.+..| +..+++|++|++++|
T Consensus 278 ~~~~---~~~~l~~L~~L~L~~n-~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 278 SNIS---PLAGLTALTNLELNEN-QLEDISP----------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CCCG---GGTTCTTCSEEECCSS-CCSCCGG----------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred Cccc---cccCCCccCeEEcCCC-cccCchh----------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 1101 1344566666666653 3443332 0123778888888887766544 667888888888888
Q ss_pred CCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCC
Q 002156 567 SSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCH 616 (959)
Q Consensus 567 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 616 (959)
. ++.++.+..+++|+.|++++|+..+..| + ..+++|++|++++|+
T Consensus 342 ~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 K-VSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCEE
T ss_pred c-cCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCCc
Confidence 4 4445667777888888888887665554 2 677888888888754
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=254.70 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=150.7
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVN 132 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~ 132 (959)
..+.++++||.|.+.++. ...+| .+..+++|++|++++|.++.+| ++.+++|++|++++|+++.+| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~-------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS-------ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSC-------CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCCC-------cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 345678889999887754 33444 6788999999999999988885 888999999999999988885 88
Q ss_pred ccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhccc
Q 002156 133 KLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRG 212 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (959)
++++|++|++++| .+..+| ++.+++|++|++++|. ++.+| ++++++|++|++..+......
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~------------- 164 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL------------- 164 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC-------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc-------------
Confidence 8999999999985 566665 8889999999999988 77764 778888888854322110000
Q ss_pred ceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcccc
Q 002156 213 ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLG 292 (959)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 292 (959)
.+..+++|+.|++++|..+.. + +..+++|+.|+++++....++ +
T Consensus 165 -------------------~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N~l~~~~--l- 208 (457)
T 3bz5_A 165 -------------------DVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTNNITKLD--L- 208 (457)
T ss_dssp -------------------CCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSSCCSCCC--C-
T ss_pred -------------------ccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCCcCCeec--c-
Confidence 145566777777777665321 1 455677777777777766653 3
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCC
Q 002156 293 DSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 293 ~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 331 (959)
..+++|++|++++|.+.+ +| ++.+++|++|++++|.
T Consensus 209 -~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 209 -NQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp -TTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC
T ss_pred -ccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc
Confidence 236777778887777765 34 6777777888777765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=244.97 Aligned_cols=193 Identities=20% Similarity=0.133 Sum_probs=131.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|...+..+ ++.+++|++|++++|...+. ..+..+++|++|++++|......+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 577777777776655443 66677888888877765543 346677888888888775443332 666778888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|+.|++++|....... +..+++|++|++++|.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCc
Confidence 8887665443 6777888888888887775433 6677788888888886432211 4567788888887764
Q ss_pred CCcc-cccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCC
Q 002156 859 DDMV-SFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 859 ~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
.... .+..+++|+.|++++| .+..+++ +..+++|++|++++|+ ++.+|.
T Consensus 343 l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 343 VSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred cCCchhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 4333 2335678888888886 4555554 8889999999999875 444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=243.51 Aligned_cols=177 Identities=19% Similarity=0.149 Sum_probs=133.9
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.....+|.......+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 57888888888777666677888899999999988887777778888999999999998888888877777778999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...... +..+..+++|++|++++|.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC----TTTBTTCTTCCEEECCSSC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC----HHHhcCcccCCEEECCCCc
Confidence 999877555567888899999999999888777777888889999999988643322 1456677788888887754
Q ss_pred CCcccc---cCCCCCceEeeccCC
Q 002156 859 DDMVSF---PLPASLTSLEISFFP 879 (959)
Q Consensus 859 ~~~~~~---~~~~~L~~L~l~~~~ 879 (959)
...... ..+++|+.|++++|+
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CceeCHhHcCCCcccCEEEccCCC
Confidence 333221 233456666666543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=230.68 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=58.2
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCc
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVA 576 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (959)
.+++|++|+++++ .+..++.- ..+++|++|++++|.+.+ ++. +..+++|++|++++| .++.++.+.
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~~----------~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n-~i~~~~~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQGI----------EYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTN-KITDISALQ 107 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred hcccccEEEEeCC-ccccchhh----------hhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCC-cccCchHHc
Confidence 4556666666653 33333210 112666667776665543 332 666677777777766 334455566
Q ss_pred CCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCc
Q 002156 577 LPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLT 619 (959)
Q Consensus 577 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 619 (959)
.+++|++|++++|.... ++. + ..+++|++|++++|..+.
T Consensus 108 ~l~~L~~L~l~~n~i~~-~~~-~--~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISD-ISP-L--ANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp TCTTCSEEECTTSCCCC-CGG-G--TTCTTCCEEECTTCTTCC
T ss_pred CCCcCCEEECcCCcccC-chh-h--ccCCceeEEECCCCCCcc
Confidence 66667777776666433 222 2 556666666666655443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=228.12 Aligned_cols=300 Identities=17% Similarity=0.102 Sum_probs=152.8
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
++|++|++++|.+.. ++ .+..+++|++|++++| .++.++.+..+++|++|++++|.... ++ .+ ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITD-IS-AL--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC-CG-GG--TTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCcccC-ch-HH--cCCCcCCEEE
Confidence 678888888877643 34 3677788888888887 34445556677778888888776433 33 22 6677777777
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|. +..++... .+++|+.|++++|.....+..
T Consensus 117 l~~n~-i~~~~~~~-----------------------------------~l~~L~~L~l~~n~~~~~~~~---------- 150 (347)
T 4fmz_A 117 LNEDN-ISDISPLA-----------------------------------NLTKMYSLNLGANHNLSDLSP---------- 150 (347)
T ss_dssp CTTSC-CCCCGGGT-----------------------------------TCTTCCEEECTTCTTCCCCGG----------
T ss_pred CcCCc-ccCchhhc-----------------------------------cCCceeEEECCCCCCcccccc----------
Confidence 77743 22221111 122333333333322221000
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
+..+ ++|++|++++|......+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.... ++. +..++
T Consensus 151 --~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~~~ 221 (347)
T 4fmz_A 151 --LSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP-VANMT 221 (347)
T ss_dssp --GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GGGCT
T ss_pred --hhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch-hhcCC
Confidence 0111 344555555444332221 4445555555555544333211 4445555555555543222 211 33444
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|.
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~--------------------- 276 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQ--------------------- 276 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC---------------------
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hHhcCCCcCEEEccCCc---------------------
Confidence 55555555554433222 4445555555555554442 22 34444455555554443
Q ss_pred EEEcccCCCccc-ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 852 LEIRGCDDDMVS-FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 852 L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
..... +..+++|+.|++++|......|..+..+++|++|++++|+ ++.++...-.++|++|++++|+
T Consensus 277 -------l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 277 -------ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp -------CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred -------cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 22221 2244566666666654333444567777788888888765 4444433335677777777775
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=240.64 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=136.4
Q ss_pred CCCCcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCc
Q 002156 469 QLPKLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKL 548 (959)
Q Consensus 469 ~~~~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 548 (959)
.|.++++|+.+++++|.+.. ..+..+..+++|++|+++++ .++.++...+. -+++|++|++++|.+.+..
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT--------GLSNLTKLDISENKIVILL 120 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS-CCCSCCTTSST--------TCTTCCEEECTTSCCCEEC
T ss_pred HccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCC-cCCccCccccc--------CCCCCCEEECCCCccccCC
Confidence 34444444444444444321 12223344555555555542 34433332111 1156677777777666666
Q ss_pred cccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCC
Q 002156 549 PQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLP 627 (959)
Q Consensus 549 ~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 627 (959)
+..+..+++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|+.|++++|.. ..++..
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i-~~~~~~--- 194 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNI-NAIRDY--- 194 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCC-CEECTT---
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcC-cEeChh---
Confidence 6667777777777777775443333 35566777777777776443332223 5667777777776432 111110
Q ss_pred CCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeec
Q 002156 628 RSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVF 707 (959)
Q Consensus 628 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~ 707 (959)
.+..++ +|++|+++
T Consensus 195 ------------------------------~~~~l~------------------------------------~L~~L~l~ 208 (477)
T 2id5_A 195 ------------------------------SFKRLY------------------------------------RLKVLEIS 208 (477)
T ss_dssp ------------------------------CSCSCT------------------------------------TCCEEEEE
T ss_pred ------------------------------hcccCc------------------------------------ccceeeCC
Confidence 001112 33333333
Q ss_pred cChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcc
Q 002156 708 ECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEAL 787 (959)
Q Consensus 708 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 787 (959)
+|...+.++.......+|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 33333322222233334444444444433322234445555555555555433333334444555555555555555444
Q ss_pred ccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCch
Q 002156 788 PKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 788 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 831 (959)
|..+.++++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 55555555555555555555544444445555555555555543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=236.60 Aligned_cols=301 Identities=17% Similarity=0.122 Sum_probs=215.7
Q ss_pred ccCCcccEEeccccCCCCCCcccccccccC-CCCCceeEEEecCCCCcccc-ccccccCcccEEeccCCCCcccc-hhhh
Q 002156 56 YDIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVN 132 (959)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~ 132 (959)
..++++|.|.+.++. ...+|+.+ ..+++|++|++++|.++.++ ..|..+++|++|+|++|.+..+| ..++
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 356889999887754 56777775 88999999999999998885 48999999999999999999884 5589
Q ss_pred ccccccEEeccCcchhhhhhHh-hhcccccceeecCCCCccccccc-ccccccCCceeceEEeccCCCCChhhhhhhhhc
Q 002156 133 KLYNLHTLLLEDCRELKKLCAD-MGNLIKLHHHNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 210 (959)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 210 (959)
++++|++|++++| .+..+|.. ++++++|++|++++|. +..++. .++++++|++|++..+.....
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC------------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc------------
Confidence 9999999999985 67788776 5899999999999998 777654 488999999986543321110
Q ss_pred ccceeeccccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCcc
Q 002156 211 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTW 290 (959)
Q Consensus 211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~ 290 (959)
.+..+++|+.|++++|... .+...+.|++|+++++....+|..
T Consensus 181 ---------------------~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 181 ---------------------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp ---------------------CGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECC
T ss_pred ---------------------ccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeecccc
Confidence 0233456666666655442 222345677777777776666543
Q ss_pred ccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceecccccccccccccc
Q 002156 291 LGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHG 370 (959)
Q Consensus 291 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 370 (959)
. +++|+.|++++|.+.+ .+.++.+++|++|++++|.........+.+ +++|++|++.++.- ..
T Consensus 224 ~----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l-~~----- 286 (390)
T 3o6n_A 224 V----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNRL-VA----- 286 (390)
T ss_dssp C----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSCC-CE-----
T ss_pred c----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCcC-cc-----
Confidence 3 5677788888777654 356677778888888777544443433322 67777777777532 22
Q ss_pred CCCCccccccccceeccccCccccCCCCC---CCCCccEEEEeccCCcccccCCCCCccEEEecCCC
Q 002156 371 SSQGVVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCK 434 (959)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 434 (959)
++.....+++|++|++++| .++ .+|. .+++|++|++++|+.....+..+++|+.|++++++
T Consensus 287 -~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 287 -LNLYGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp -EECSSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred -cCcccCCCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 1223356788888888885 565 5553 45788888888887666667788999999999887
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=230.48 Aligned_cols=311 Identities=17% Similarity=0.148 Sum_probs=231.9
Q ss_pred CcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccc
Q 002156 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQS 551 (959)
Q Consensus 472 ~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 551 (959)
.+.+++.++++++.+. ..+...+..+++|++|+++++ .++.++...+. .+++|++|++++|.+.+..|..
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCC-cccccChhhcc--------CCCCcCEEECCCCCCCcCCHHH
Confidence 3567777778777653 345556788999999999985 56666554332 2389999999999988777778
Q ss_pred ccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCC
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS 629 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 629 (959)
++.+++|++|++++|.. +.+|. +..+++|++|++++|......+..+ ..+++|++|++++|. ++.++. ...++
T Consensus 113 ~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~-~~l~~ 187 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVDL-SLIPS 187 (390)
T ss_dssp TTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSC-CSBCCG-GGCTT
T ss_pred hcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCc-CCcccc-ccccc
Confidence 89999999999999954 45553 4678999999999998766555545 788999999999865 333322 33456
Q ss_pred ccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccC
Q 002156 630 LKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709 (959)
Q Consensus 630 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~ 709 (959)
++.+++.++ .+..++ ..+.|+.|+++++.--. .+ +..+++|+.|++++|
T Consensus 188 L~~L~l~~n-~l~~~~---------------~~~~L~~L~l~~n~l~~--~~-------------~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 188 LFHANVSYN-LLSTLA---------------IPIAVEELDASHNSINV--VR-------------GPVNVELTILKLQHN 236 (390)
T ss_dssp CSEEECCSS-CCSEEE---------------CCSSCSEEECCSSCCCE--EE-------------CCCCSSCCEEECCSS
T ss_pred cceeecccc-cccccC---------------CCCcceEEECCCCeeee--cc-------------ccccccccEEECCCC
Confidence 777776664 233222 12468888888754321 11 112368999999998
Q ss_pred hhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccc
Q 002156 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPK 789 (959)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 789 (959)
...+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|. ++.+|..+..+++|++|++++|++. .+|.
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCc
Confidence 87653 568889999999999998888888889999999999999984 5557777778899999999999865 5666
Q ss_pred ccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh
Q 002156 790 GLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 790 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
.+..+++|+.|++++|.+... + +..+++|+.|++++|+.....
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 778889999999999988743 3 667889999999999865543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=241.20 Aligned_cols=311 Identities=17% Similarity=0.147 Sum_probs=238.1
Q ss_pred CcceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcccc
Q 002156 472 KLEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQS 551 (959)
Q Consensus 472 ~L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 551 (959)
.+.++++++++++.+. ..+...+..+++|+.|+++++ .++.++...+. .+++|++|++++|.+.+..|..
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA--------YAHTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTT--------TCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCC-CCCCCChHHhc--------CCCCCCEEECCCCcCCCCCHHH
Confidence 3566777888877663 355566788999999999985 57666554332 2389999999999988877778
Q ss_pred ccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCC
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRS 629 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 629 (959)
++++++|++|++++|... .+|. +..+++|++|++++|......+..+ ..+++|++|++++|. ++.++. ...++
T Consensus 119 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~-~~l~~ 193 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVDL-SLIPS 193 (597)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSC-CSBCCG-GGCTT
T ss_pred HcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCC-CCCcCh-hhhhh
Confidence 899999999999999544 5553 4678999999999998766666555 788999999999964 333332 33456
Q ss_pred ccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccC
Q 002156 630 LKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFEC 709 (959)
Q Consensus 630 L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~ 709 (959)
|+.++++++ .+..++ ..+.|+.|+++++.--. ++ +..+++|+.|++++|
T Consensus 194 L~~L~l~~n-~l~~l~---------------~~~~L~~L~ls~n~l~~-------~~--------~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 194 LFHANVSYN-LLSTLA---------------IPIAVEELDASHNSINV-------VR--------GPVNVELTILKLQHN 242 (597)
T ss_dssp CSEEECCSS-CCSEEE---------------CCTTCSEEECCSSCCCE-------EE--------CSCCSCCCEEECCSS
T ss_pred hhhhhcccC-cccccc---------------CCchhheeeccCCcccc-------cc--------cccCCCCCEEECCCC
Confidence 777776664 232222 12468888888864221 11 223368999999999
Q ss_pred hhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccc
Q 002156 710 SKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPK 789 (959)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 789 (959)
.+.+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|.
T Consensus 243 ~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 243 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCc
Confidence 8876 3678899999999999999988889999999999999999985 5557777788999999999999876 5677
Q ss_pred ccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhh
Q 002156 790 GLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 790 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
.+..+++|+.|++++|.+.+. + +..+++|+.|++++|+.....
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 788899999999999998754 3 667899999999999865543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-22 Score=213.19 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=102.7
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+|++|++++|.+.+..+..+..+++|++|++++|.... ..+..+..+++|++|++++|. ++.+|.... ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEE
Confidence 44555555555444444555666666666666655532 345555666666666666663 334444332 5666666
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
+++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.... .+..+..+++|++|++++|
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCC
Confidence 66666555555566666666666666666665545455566666666666664321 1123445555555555554
Q ss_pred CCCccccc---------CCCCCceEeeccCCCCc--ccccccCCCCCCcEEecCCC
Q 002156 858 DDDMVSFP---------LPASLTSLEISFFPNLE--RLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 858 ~~~~~~~~---------~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c 902 (959)
........ ...+|+.|++++|+... ..|..+..+++++.+++++|
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 32222111 12445566666654321 22335666666666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=221.76 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=49.3
Q ss_pred cccceEEEecCCCCC--CccccccCCCCcceeeecc-CCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCc
Q 002156 532 CRLEYLTLSGCQGLV--KLPQSSLSLSSLREIVIYK-CSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSL 607 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 607 (959)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.....+| .+..+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 467777777777776 6777777777777777774 54444444 34556666666666665544444443 344444
Q ss_pred cEEEEec
Q 002156 608 EILTISS 614 (959)
Q Consensus 608 ~~L~l~~ 614 (959)
++|++++
T Consensus 128 ~~L~Ls~ 134 (313)
T 1ogq_A 128 VTLDFSY 134 (313)
T ss_dssp CEEECCS
T ss_pred CEEeCCC
Confidence 4444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=233.48 Aligned_cols=307 Identities=14% Similarity=0.025 Sum_probs=173.3
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCC-C
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE-V 575 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~ 575 (959)
.+.+++.+++++ +.+..++...+.. +++|++|++++|.+.+..|..++.+++|++|++++|......|. +
T Consensus 49 ~l~~l~~l~l~~-~~l~~lp~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKN-STMRKLPAALLDS--------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESS-CEESEECTHHHHH--------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeC-CCCCCcCHHHHcc--------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 356778888877 4566666543322 27888888888887766666788888888888888854443332 4
Q ss_pred cCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCC
Q 002156 576 ALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSS 655 (959)
Q Consensus 576 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 655 (959)
..+++|++|++++|... .+|...+ ..+++|++|++++|.. ..++..
T Consensus 120 ~~l~~L~~L~L~~n~l~-~l~~~~~-~~l~~L~~L~Ls~N~l-~~~~~~------------------------------- 165 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLS-SLPRGIF-HNTPKLTTLSMSNNNL-ERIEDD------------------------------- 165 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTT-TTCTTCCEEECCSSCC-CBCCTT-------------------------------
T ss_pred cCCCCCCEEEeeCCCCC-CCCHHHh-ccCCCCCEEEeeCCcC-CCCChh-------------------------------
Confidence 66788888888888654 4444322 5677788887777532 211110
Q ss_pred CcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCC
Q 002156 656 SSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGN 735 (959)
Q Consensus 656 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 735 (959)
.+..+ ++|++|++++|.+.+. .++.+++|+.|++++|.+
T Consensus 166 --~~~~l------------------------------------~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 166 --TFQAT------------------------------------TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp --TTTTC------------------------------------TTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred --hhhcC------------------------------------CcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 00011 3444555544443322 134456666666666544
Q ss_pred CcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccC
Q 002156 736 LKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED 815 (959)
Q Consensus 736 ~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 815 (959)
.+ +...++|++|++++|.. ..++... .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 32 22345667777776643 3333322 2467777777776654 2456667777777777777776666667
Q ss_pred CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCc
Q 002156 816 GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILT 895 (959)
Q Consensus 816 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 895 (959)
+.+++|+.|++++|..... +..+..+++|+.|++++| .+..+|..+..+++|+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N----------------------~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHN----------------------HLLHVERNQPQFDRLE 327 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSS----------------------CCCCCGGGHHHHTTCS
T ss_pred cCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCC----------------------CCCccCcccccCCCCC
Confidence 7777777777777643221 122233445555555442 3444444444455555
Q ss_pred EEecCCCcCCCCCCCCCCccccceeeccCCh
Q 002156 896 ELRLYHCRKLKYFPKKGLPSSLLRLWIEGCP 926 (959)
Q Consensus 896 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 926 (959)
+|++++|. +..++... .++|+.|++++||
T Consensus 328 ~L~L~~N~-l~~~~~~~-~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNS-IVTLKLST-HHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSC-CCCCCCCT-TCCCSEEECCSSC
T ss_pred EEECCCCC-CCCcChhh-cCCCCEEEeeCCC
Confidence 55555533 33333221 2445555555544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-23 Score=221.11 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=113.6
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC-CccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA-KLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l 778 (959)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..++ +|++|++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 455555555555444555555666666666666665555666666666666666666655445565555555 6666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+.+|..+..++ |+.|++++|.+.+.+|..+..+++|+.|++++|....... .+..+++|++|
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L------ 249 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGL------ 249 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEE------
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEE------
Confidence 66666555666665554 6666666666666666666666666666666664321111 12223333333
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCChhH
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 928 (959)
++++|.....+|..+..+++|++|++++|..-..+|..+-.++|+.+++.+++.+
T Consensus 250 ---------------~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 250 ---------------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ---------------ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ---------------ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 3333322225555666666666666666654445555444456666666666543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=213.33 Aligned_cols=285 Identities=14% Similarity=0.087 Sum_probs=147.5
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++++.++++++.+. .+|..+ .++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEE
Confidence 35566666665543 445433 3566667776664332222 35556667777776666544444444 566777777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|. ++.++. .+.
T Consensus 108 ~L~~n~-l~~l~~-~~~--------------------------------------------------------------- 122 (332)
T 2ft3_A 108 YISKNH-LVEIPP-NLP--------------------------------------------------------------- 122 (332)
T ss_dssp ECCSSC-CCSCCS-SCC---------------------------------------------------------------
T ss_pred ECCCCc-CCccCc-ccc---------------------------------------------------------------
Confidence 776643 222221 011
Q ss_pred ccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC--cccCccccCCCCcceeeccccccccccCCCCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL--KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
++|++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+ +|++|++++|. ++.+|..+.
T Consensus 123 --------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~ 192 (332)
T 2ft3_A 123 --------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP 192 (332)
T ss_dssp --------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC
T ss_pred --------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc
Confidence 23444444444443333334555566666666665553 2344555555 66666666663 333544332
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.... .+..+..+++
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~ 265 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKL 265 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTT
T ss_pred --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-----cChhhhcCcc
Confidence 466666666666555555556666666666666666665555555566666666666664321 1122445555
Q ss_pred ccEEEEcccCCCccccc---------CCCCCceEeeccCCCC--cccccccCCCCCCcEEecCCCc
Q 002156 849 LRRLEIRGCDDDMVSFP---------LPASLTSLEISFFPNL--ERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 849 L~~L~l~~~~~~~~~~~---------~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
|++|++++|........ ...+|+.|++++|+.. ...|..+..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55555555432222111 1344666666665533 2334456667777777776654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=212.79 Aligned_cols=232 Identities=22% Similarity=0.259 Sum_probs=190.4
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
.++++.|++++|.+. .+|..+..+++|++|++++|... .+| .+..+++|++|++++|... .+|..+ ..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCE
Confidence 378999999999886 77888888999999999999655 666 4778999999999999866 777766 78899999
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|..+..++. .+....+.+ .
T Consensus 155 L~L~~n~~~~~~p~-----~~~~~~~~~--------------------------------------------------~- 178 (328)
T 4fcg_A 155 LSIRACPELTELPE-----PLASTDASG--------------------------------------------------E- 178 (328)
T ss_dssp EEEEEETTCCCCCS-----CSEEEC-CC--------------------------------------------------C-
T ss_pred EECCCCCCccccCh-----hHhhccchh--------------------------------------------------h-
Confidence 99999876654442 222210000 0
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
++.+ ++|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..
T Consensus 179 ----~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 179 ----HQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp ----EEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred ----hccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 0011 57888888888766 677788999999999999988775 6667899999999999999999999999999
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..++.+++|+.+++..+.
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=208.53 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=143.5
Q ss_pred cceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccc
Q 002156 473 LEELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSS 552 (959)
Q Consensus 473 L~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 552 (959)
..+++.++++++.+.. .+.. ..+.++.|+++++ .++.++...+. -+++|++|++++|.+.+..|..+
T Consensus 30 ~c~l~~l~~~~~~l~~-lp~~---~~~~l~~L~L~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEK-VPKD---LPPDTALLDLQNN-KITEIKDGDFK--------NLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp EEETTEEECTTSCCCS-CCCS---CCTTCCEEECCSS-CCCCBCTTTTT--------TCTTCCEEECCSSCCCCBCTTTT
T ss_pred cCCCeEEEecCCCccc-cCcc---CCCCCeEEECCCC-cCCEeChhhhc--------cCCCCCEEECCCCcCCeeCHHHh
Confidence 3345556666554421 1111 1256777777763 45555443221 12677777777777766667677
Q ss_pred cCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccE
Q 002156 553 LSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQ 632 (959)
Q Consensus 553 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 632 (959)
..+++|++|++++|. ++.+|.. .+++|++|++++|......+..+ ..+++|++|++++|..-. .+
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~---------- 161 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKS-SG---------- 161 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCG-GG----------
T ss_pred cCCCCCCEEECCCCc-CCccChh-hcccccEEECCCCcccccCHhHh--cCCccccEEECCCCcCCc-cC----------
Confidence 777777777777774 3344432 23677777777776544433333 567777777777643211 00
Q ss_pred EEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhh
Q 002156 633 LDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKL 712 (959)
Q Consensus 633 L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~ 712 (959)
..+.....+++|+.|+++++.-- .+|. .++++|++|++++|.+.
T Consensus 162 ---------------------~~~~~~~~l~~L~~L~l~~n~l~-------~l~~--------~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 162 ---------------------IENGAFQGMKKLSYIRIADTNIT-------TIPQ--------GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp ---------------------BCTTGGGGCTTCCEEECCSSCCC-------SCCS--------SCCTTCSEEECTTSCCC
T ss_pred ---------------------cChhhccCCCCcCEEECCCCccc-------cCCc--------cccccCCEEECCCCcCC
Confidence 00011122334444444443211 0110 01135555555555544
Q ss_pred HHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccC
Q 002156 713 ESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLH 792 (959)
Q Consensus 713 ~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 792 (959)
+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|++.+..+..+.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 4444455555555555555555444444445555555555555552 334454455555555555555554443333332
Q ss_pred C------CCccceeeeccCCCCC--CCcccCCCCCCcceEEccCC
Q 002156 793 N------LTSLQELRIGRGVELP--SLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 793 ~------l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n 829 (959)
. .++|+.|++++|++.. ..|..+..+.+++.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1 2444455555554431 23334444444444544444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=212.09 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=68.4
Q ss_pred eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccC
Q 002156 475 ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLS 554 (959)
Q Consensus 475 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 554 (959)
.++.++++++.+.. .+... .++++.|+++++ .++.++...+. -+++|++|++++|.+.+..|..+..
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI---SPDTTLLDLQNN-DISELRKDDFK--------GLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC---CTTCCEEECCSS-CCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGSTT
T ss_pred cCCEEECCCCCccc-cCCCC---CCCCeEEECCCC-cCCccCHhHhh--------CCCCCcEEECCCCccCccCHhHhhC
Confidence 45556666555421 12111 256666776663 45544433221 1266777777777666555666667
Q ss_pred CCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCC
Q 002156 555 LSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCH 616 (959)
Q Consensus 555 l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 616 (959)
+++|++|++++|.. +.+|... .++|++|++++|......+..+ ..+++|++|++++|.
T Consensus 101 l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 101 LRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNP 158 (332)
T ss_dssp CTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCC
T ss_pred cCCCCEEECCCCcC-CccCccc-cccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCc
Confidence 77777777776633 3444322 2667777777766543333223 566666666666643
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-23 Score=245.92 Aligned_cols=206 Identities=11% Similarity=0.037 Sum_probs=119.5
Q ss_pred CCCceEeeccChhhHH-HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccc----------cccccc--cCC
Q 002156 699 PSLKSLGVFECSKLES-IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWN----------CGNLVS--FPE 765 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~----------~~~l~~--~~~ 765 (959)
++|++|++++|..... ++..+..+++|++|+++++-..+.++..+..+++|++|++++ |..++. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 4677777777764433 334466777777777763322223344445567777777773 433331 222
Q ss_pred CCCCCCCccEEEecCCcCcCccccccCC-CCccceeeecc----CCCCCC-----CcccCCCCCCcceEEccCCch-hhh
Q 002156 766 GGLPCAKLMRLEIYGCERLEALPKGLHN-LTSLQELRIGR----GVELPS-----LEEEDGLPTNLQSLDIWGNIE-IWK 834 (959)
Q Consensus 766 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~----n~~~~~-----~~~~~~~~~~L~~L~l~~n~~-~~~ 834 (959)
....+++|++|+++.+.+.+..+..+.. +++|+.|++++ |.+.+. ++..+..+++|+.|++++|.. ++.
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 2234677777777666665555555543 77777777763 333321 222244577788888876542 222
Q ss_pred hhhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCcc--cccccCCCCCCcEEecCCCcCCCCC
Q 002156 835 SMIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLER--LSSSIVDLQILTELRLYHCRKLKYF 908 (959)
Q Consensus 835 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l 908 (959)
.... .....+++|++|++++|....... ..+++|+.|++++|+ ++. ++..+..+++|++|++++|+ ++..
T Consensus 453 ~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 453 LGLS--YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHH--HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHH--HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 1111 112346778888887765332221 245778888888877 443 45455678899999999987 5544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-24 Score=245.53 Aligned_cols=226 Identities=19% Similarity=0.064 Sum_probs=128.9
Q ss_pred CCCceEeeccChhhHHHHHhhc-----CCCCccEEeecccCCCcc----cCccccCCCCcceeeccccccccc----c-C
Q 002156 699 PSLKSLGVFECSKLESIAERLD-----NNTSLEIISIGSCGNLKI----LPSGLHNLCQLQEIEIWNCGNLVS----F-P 764 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~l~~----~-~ 764 (959)
++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|..... + +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 4667777776665544333332 355677777777665542 355556667777777777643221 1 1
Q ss_pred CCCCCCCCccEEEecCCcCcCc----cccccCCCCccceeeeccCCCCCCCcccC-----CCCCCcceEEccCCchhhhh
Q 002156 765 EGGLPCAKLMRLEIYGCERLEA----LPKGLHNLTSLQELRIGRGVELPSLEEED-----GLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 765 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~ 835 (959)
.....+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+ ...++|++|++++|......
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 1122456777777777765543 44555566777777777776543222111 12357777777777644332
Q ss_pred hhhhccCCCCCCCccEEEEcccCCCccccc--------CCCCCceEeeccCCCCc-----ccccccCCCCCCcEEecCCC
Q 002156 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSFP--------LPASLTSLEISFFPNLE-----RLSSSIVDLQILTELRLYHC 902 (959)
Q Consensus 836 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c 902 (959)
....+..+..+++|++|++++|........ ..++|+.|++++| .++ .+|..+..+++|++|++++|
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 222223344567777777777533222111 1457888888886 455 67878888999999999997
Q ss_pred cCCCCCCCC-------CCccccceeeccCCh
Q 002156 903 RKLKYFPKK-------GLPSSLLRLWIEGCP 926 (959)
Q Consensus 903 ~~l~~l~~~-------~~~~~L~~L~l~~c~ 926 (959)
+ ++..... ....+|+.|++.++.
T Consensus 409 ~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 409 C-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp S-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred C-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 5 3322110 012357777766553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=209.61 Aligned_cols=191 Identities=21% Similarity=0.299 Sum_probs=147.5
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
....++++|+|++|.++.+|..+.++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|+
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 356889999999999999999999999999999999999999999999999999999995 5668999999999999999
Q ss_pred cCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEE
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (959)
+++|+..+.+|..++...-- ..+.++++|++|+++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDAS---------------------------------------------GEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-C---------------------------------------------CCEEESTTCCEEEEE
T ss_pred CCCCCCccccChhHhhccch---------------------------------------------hhhccCCCCCEEECc
Confidence 99987788888876642100 013345566777777
Q ss_pred eccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCe
Q 002156 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALP-SMGQLPSLKH 324 (959)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 324 (959)
+|.++.. +..+..+++|++|++++|....+|..+.. +++|++|++++|.+.+.+| .++.+++|++
T Consensus 192 ~n~l~~l------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 192 WTGIRSL------------PASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EECCCCC------------CGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCcCcc------------hHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 7665322 23345567777777777777777776644 7788888888887777666 6777888888
Q ss_pred eEecCCCCceEe
Q 002156 325 LTVRGMSRVKRL 336 (959)
Q Consensus 325 L~L~~~~~~~~~ 336 (959)
|++++|.....+
T Consensus 258 L~L~~n~~~~~~ 269 (328)
T 4fcg_A 258 LILKDCSNLLTL 269 (328)
T ss_dssp EECTTCTTCCBC
T ss_pred EECCCCCchhhc
Confidence 888877654443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=198.86 Aligned_cols=135 Identities=17% Similarity=0.089 Sum_probs=110.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc-ccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK-ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
++|++|++++|...+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 477888888877776667778888888999998887766 5688888889999999998876666677788888999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCchhh
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNIEIW 833 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 833 (959)
+++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+ ++|++|++++|+...
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99998877766678888999999999999888888778777 489999999987543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-22 Score=233.15 Aligned_cols=340 Identities=13% Similarity=0.010 Sum_probs=182.1
Q ss_pred cccceEEEecCCCCCC----ccccccCCCCcceeeeccCCCc----ccCCC-CcCCCCCCeEEEecCCCCcccChhhhcC
Q 002156 532 CRLEYLTLSGCQGLVK----LPQSSLSLSSLREIVIYKCSSL----VSFPE-VALPSKLKKINIWHCDALKSLPEAWMCD 602 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l----~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 602 (959)
++|++|++++|.+.+. ++.....+++|++|++++|... ..++. +..+++|++|++++|.... ++..+ .
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~--~ 240 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF--K 240 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH--H
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH--h
Confidence 6666666666654333 2333445666666666666432 11111 2345667777776665332 33333 4
Q ss_pred CCCCccEEEEecCCCCccc----cCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccc
Q 002156 603 TNSSLEILTISSCHSLTYF----GGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTC 678 (959)
Q Consensus 603 ~l~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 678 (959)
.+++|++|+++++...... .....+++|+.+.+.++. . ...+.....+++|++|++++|. +..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-----------~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P-----------NEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T-----------TTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h-----------hHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 5667777777643221110 111222445555444321 1 1112223345678888887776 322
Q ss_pred ccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecc----------cCCCcc--cCccccCC
Q 002156 679 IFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGS----------CGNLKI--LPSGLHNL 746 (959)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~--~p~~~~~l 746 (959)
.. ++.. +..+ ++|++|+++++-....++.....+++|++|++++ |..++. ++.....+
T Consensus 308 ~~----~~~~-----~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 308 ED----HCTL-----IQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp HH----HHHH-----HTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred HH----HHHH-----HHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 10 0000 1222 5788888884444445566667788888888884 544442 23334557
Q ss_pred CCcceeeccccccccccCCCCC-CCCCccEEEecC----CcCcCc-----cccccCCCCccceeeeccCC--CCCCCccc
Q 002156 747 CQLQEIEIWNCGNLVSFPEGGL-PCAKLMRLEIYG----CERLEA-----LPKGLHNLTSLQELRIGRGV--ELPSLEEE 814 (959)
Q Consensus 747 ~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~----~~~~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~ 814 (959)
++|++|+++.+......+..+. .+++|++|++++ +.+.+. ++..+.++++|+.|++++|. +....+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 8888888865544333333333 367888888863 333321 22335567888888887654 33332222
Q ss_pred C-CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCccccc--c
Q 002156 815 D-GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLERLSS--S 887 (959)
Q Consensus 815 ~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~~--~ 887 (959)
+ ..+++|+.|++++|........ ..+.++++|++|++++|....... ..+++|+.|++++|. ++.... -
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l 533 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLM---EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM 533 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHH---HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGG
T ss_pred HHHhCccceEeeccCCCCCHHHHH---HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHH
Confidence 2 2467888888888864332222 234567888888888876321111 146788888888876 443211 2
Q ss_pred cCCCCCCcEEecCC
Q 002156 888 IVDLQILTELRLYH 901 (959)
Q Consensus 888 ~~~l~~L~~L~l~~ 901 (959)
...++.+....+..
T Consensus 534 ~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 QMARPYWNIELIPS 547 (592)
T ss_dssp GGCCTTEEEEEECC
T ss_pred HHhCCCcEEEEecC
Confidence 23456666555554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-23 Score=231.90 Aligned_cols=326 Identities=18% Similarity=0.099 Sum_probs=212.3
Q ss_pred cccceEEEecCCCCC----CccccccCCCCcceeeeccCCCcccCC-C-CcCCC----CCCeEEEecCCCCc----ccCh
Q 002156 532 CRLEYLTLSGCQGLV----KLPQSSLSLSSLREIVIYKCSSLVSFP-E-VALPS----KLKKINIWHCDALK----SLPE 597 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~~~-~-~~~~~----~L~~L~l~~~~~~~----~~~~ 597 (959)
++|++|++++|.+.. .++..+..+++|++|++++|......+ . ...++ +|++|++++|.... .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 667777777776543 345556667778888887775332111 1 11122 67778887776542 2344
Q ss_pred hhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccc
Q 002156 598 AWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLT 677 (959)
Q Consensus 598 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 677 (959)
.+ ..+++|++|++++|. ++.... ..
T Consensus 108 ~l--~~~~~L~~L~Ls~n~-i~~~~~------------------~~---------------------------------- 132 (461)
T 1z7x_W 108 TL--RTLPTLQELHLSDNL-LGDAGL------------------QL---------------------------------- 132 (461)
T ss_dssp HT--TSCTTCCEEECCSSB-CHHHHH------------------HH----------------------------------
T ss_pred HH--ccCCceeEEECCCCc-CchHHH------------------HH----------------------------------
Confidence 33 566777777777643 111000 00
Q ss_pred cccccCCcchhhhccccCCCCCCCceEeeccChhhH----HHHHhhcCCCCccEEeecccCCCcccCcccc-----CCCC
Q 002156 678 CIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLE----SIAERLDNNTSLEIISIGSCGNLKILPSGLH-----NLCQ 748 (959)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-----~l~~ 748 (959)
+...+ .... ++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++
T Consensus 133 -------l~~~l----~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 133 -------LCEGL----LDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp -------HHHHH----TSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred -------HHHHH----hcCC-CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence 00000 0000 478888888887655 5677888899999999999986554333332 3679
Q ss_pred cceeeccccccccc----cCCCCCCCCCccEEEecCCcCcCcc-----ccccCCCCccceeeeccCCCCCC----CcccC
Q 002156 749 LQEIEIWNCGNLVS----FPEGGLPCAKLMRLEIYGCERLEAL-----PKGLHNLTSLQELRIGRGVELPS----LEEED 815 (959)
Q Consensus 749 L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~ 815 (959)
|++|++++|..... ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+... ++..+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 99999999965442 4555667899999999999875532 23334689999999999988753 56667
Q ss_pred CCCCCcceEEccCCchhhhhhhhhccCC-CCCCCccEEEEcccCCCcccc-------cCCCCCceEeeccCCCCcccc-c
Q 002156 816 GLPTNLQSLDIWGNIEIWKSMIERGRGF-HGFSSLRRLEIRGCDDDMVSF-------PLPASLTSLEISFFPNLERLS-S 886 (959)
Q Consensus 816 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~l~-~ 886 (959)
..+++|++|++++|.............+ ...++|++|++++|....... ...++|++|++++| .+.... .
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 359 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR 359 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH
Confidence 7789999999999975443322211212 234699999999986544321 13589999999997 566532 2
Q ss_pred ----ccCC-CCCCcEEecCCCcCCC-----CCCCC-CCccccceeeccCCh
Q 002156 887 ----SIVD-LQILTELRLYHCRKLK-----YFPKK-GLPSSLLRLWIEGCP 926 (959)
Q Consensus 887 ----~~~~-l~~L~~L~l~~c~~l~-----~l~~~-~~~~~L~~L~l~~c~ 926 (959)
.+.. .++|++|++++|. ++ .++.. .-.++|++|++++|+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2222 7899999999984 44 34331 115789999999996
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=197.24 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=75.1
Q ss_pred hcCCCCccEEeecccCCCcc-cCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKI-LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
+..+++|++|++++|...+. .+..+..+++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 34444555555555532222 23445555555555555554444445555555556666665555432222223345556
Q ss_pred ceeeeccCCCCCCCcccCC---CCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 798 QELRIGRGVELPSLEEEDG---LPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
+.|++++|.+.+..+..+. ..+.++.++++++..........+..+..+++ |+.|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~---------------------L~~L~ 283 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG---------------------LLELE 283 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT---------------------CCEEE
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC---------------------CCEEE
Confidence 6666666555543322211 23344444444443222111111111222333 33333
Q ss_pred eccCCCCcccccc-cCCCCCCcEEecCCCc
Q 002156 875 ISFFPNLERLSSS-IVDLQILTELRLYHCR 903 (959)
Q Consensus 875 l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 903 (959)
+++ +.++.+|.. +..+++|++|++++|+
T Consensus 284 Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 284 FSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 333 355666654 3566777777777664
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=197.61 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=141.7
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC--CCCCCCCccEE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE--GGLPCAKLMRL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 776 (959)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.. +.+|. .+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEE
Confidence 3566666666655554555566667777777766665544444466677777777776643 34443 45566777777
Q ss_pred EecCCc-CcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 777 EIYGCE-RLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 777 ~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
++++|. +.+..+..+.++++|+.|++++|.+.+..|..+..+++|++|++++|....... ..+..+++|++|+++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELR 230 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECC
Confidence 777764 333334566667777777777777666666666677777777777775322111 122345677777777
Q ss_pred ccCCCccccc------CCCCCceEeeccCCC----CcccccccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeecc
Q 002156 856 GCDDDMVSFP------LPASLTSLEISFFPN----LERLSSSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIE 923 (959)
Q Consensus 856 ~~~~~~~~~~------~~~~L~~L~l~~~~~----l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 923 (959)
+|........ ....++.++++++.. +..+|..+..+++|++|++++| .++.+|...+ .++|++|+++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 6644332221 345567777776532 2247878899999999999996 6778887643 6899999999
Q ss_pred CCh
Q 002156 924 GCP 926 (959)
Q Consensus 924 ~c~ 926 (959)
+|+
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 886
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=201.32 Aligned_cols=222 Identities=19% Similarity=0.162 Sum_probs=174.2
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34688999999988887778888899999999999988887777888889999999999986544444457778899999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
++++|++....+..+.++++|+.|++++|...+.++. .+..+++|++|++++|..... ..+..+++|++|+++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMS 226 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECc
Confidence 9999988766667788899999999998766656554 577889999999999864321 236778899999998
Q ss_pred ccCCCccc---ccCCCCCceEeeccCCCCccc-ccccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 856 GCDDDMVS---FPLPASLTSLEISFFPNLERL-SSSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 856 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
+|...... +.-+++|+.|++++| .+..+ |..+..+++|++|++++| .++.++...+ .++|+.|++++||
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 87655442 335678999999996 45554 557888999999999986 6778877644 5789999998876
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=190.28 Aligned_cols=134 Identities=14% Similarity=0.024 Sum_probs=102.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 35666666666655555566777888888888888777666666788888888888888544433345777888888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+..
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888888777888888888888888888888766666788888888888888754
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=191.67 Aligned_cols=224 Identities=19% Similarity=0.115 Sum_probs=157.5
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcc--cCccccCCCCcceeeccccccccccCCCCCCCCCccE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKI--LPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (959)
|+++++|++++|.+....+..+..+++|++|++++|.+... .|..+..+++|++|++++|. +..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 35778888887776644344567888888888888766532 25556677888888888874 4456666777788888
Q ss_pred EEecCCcCcCccc-cccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEE
Q 002156 776 LEIYGCERLEALP-KGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEI 854 (959)
Q Consensus 776 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 854 (959)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... .+..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEEC
Confidence 8888887665544 46777888888888888887777777777888888888888643211 1245677788888888
Q ss_pred cccCCCccc---ccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCC--CCccccceeeccCCh
Q 002156 855 RGCDDDMVS---FPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKK--GLPSSLLRLWIEGCP 926 (959)
Q Consensus 855 ~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 926 (959)
++|...... +..+++|+.|++++| .+..++. .+..+++|++|++++|......+.. .++++|+.|++++|+
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 887544432 224567888888885 5666655 6788899999999987544433332 245689999998876
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-21 Score=228.69 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=58.7
Q ss_pred eEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCcc----c
Q 002156 475 ELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLP----Q 550 (959)
Q Consensus 475 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~ 550 (959)
+|+.++++++.+.......+...+++|++|++++|..++..... .....+++|++|++++|.+.+..+ .
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA-------AIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH-------HHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH-------HHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 34444444444322222223334566666666666544321111 111122566666666665433222 2
Q ss_pred cccCCCCcceeeeccCCCcccCC-----C-CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecC
Q 002156 551 SSLSLSSLREIVIYKCSSLVSFP-----E-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSC 615 (959)
Q Consensus 551 ~l~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 615 (959)
....+++|++|++++|. ..+. . ...+++|++|++++|...+.++..+ ..+++|++|.+++|
T Consensus 179 ~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccc
Confidence 22245566666666654 1111 0 1224566666666664444333333 44556666665544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=200.24 Aligned_cols=228 Identities=18% Similarity=0.104 Sum_probs=156.9
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
+++++.|++++|.+.+..+..+.++++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCE
Confidence 3678888888888877777788888888888888885443332 46667888888888887544333333 67788888
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|. +..++... +..+
T Consensus 152 L~L~~N~-l~~~~~~~---------------------------------~~~l--------------------------- 170 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYA---------------------------------FNRV--------------------------- 170 (452)
T ss_dssp EECCSCC-CCEECTTT---------------------------------TTTC---------------------------
T ss_pred EECCCCC-cceeCHhH---------------------------------HhcC---------------------------
Confidence 8888753 22222110 0011
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHH-hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAE-RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
++|++|++++|...+.++. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|......|..+.
T Consensus 171 ---------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 171 ---------PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ---------TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred ---------CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccccc
Confidence 2444444444333333222 46667777777777776554 33 477788888888888876666677777
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 8888888888888887777778888888888888888888666666778888888888888743
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=197.72 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=157.5
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+.++.|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35778888888877766667778888888888888877766667778888888888888754433333567778888888
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+++|.+....+..+.++++|+.|++++|...+.++. .+..+++|++|++++|..... ..+..+++|++|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEECTT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEECCC
Confidence 888887666666777888888888887655555544 567788888888888854321 2356677888888887
Q ss_pred cCCCcc---cccCCCCCceEeeccCCCCcccc-cccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 857 CDDDMV---SFPLPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 857 ~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
|..... .+.-+++|+.|++++| .++.++ ..+..+++|++|++++| .++.++...+ .++|+.|+++++|
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 654433 2335677888888885 455554 46788888888888885 5667776543 5788888888776
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-20 Score=198.58 Aligned_cols=217 Identities=11% Similarity=0.037 Sum_probs=153.8
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
+++|++|++++|.+.+..|..+..+++|++|++++|..... +++..+++|++|++++|...+ ++ ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~-l~------~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-LL------VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCSSEEEE-EE------ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcCCcccc-cc------CCCCcCEE
Confidence 36888888888888777677788888899999888855433 336667777777777776322 21 22556666
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.. + .++.
T Consensus 105 ~l~~n~l-~-----------------------~~~~-------------------------------------------- 116 (317)
T 3o53_A 105 HAANNNI-S-----------------------RVSC-------------------------------------------- 116 (317)
T ss_dssp ECCSSCC-S-----------------------EEEE--------------------------------------------
T ss_pred ECCCCcc-C-----------------------CcCc--------------------------------------------
Confidence 6665321 1 1100
Q ss_pred ccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccc-cCCCCcceeeccccccccccCCCCCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGL-HNLCQLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.. +.++.. ..
T Consensus 117 ----~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~ 189 (317)
T 3o53_A 117 ----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQ-VV 189 (317)
T ss_dssp ----CCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEECC-CC
T ss_pred ----ccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cccccc-cc
Confidence 000 467788888777777666677888889999998888877666655 4688999999998854 444433 34
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
+++|++|++++|.+.+. |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+..
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 78899999999887654 445888889999999998887 56777778888888888888654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=197.15 Aligned_cols=227 Identities=16% Similarity=0.104 Sum_probs=162.2
Q ss_pred ccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCcc
Q 002156 531 SCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLE 608 (959)
Q Consensus 531 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 608 (959)
+++++.|++++|.+....+..+.++++|++|++++|... .++ .+..+++|++|++++|......+..+ ..+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCc
Confidence 367888888888877666677888888888888888543 333 35667788888888886543333333 6677788
Q ss_pred EEEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchh
Q 002156 609 ILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPAT 688 (959)
Q Consensus 609 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (959)
+|++++|. +..++... +..+
T Consensus 140 ~L~L~~N~-i~~~~~~~---------------------------------~~~l-------------------------- 159 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYA---------------------------------FNRI-------------------------- 159 (440)
T ss_dssp EEECCSCC-CCEECTTT---------------------------------TTTC--------------------------
T ss_pred eeeCCCCc-ccccCHHH---------------------------------hhhC--------------------------
Confidence 88777743 22221100 0011
Q ss_pred hhccccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCC
Q 002156 689 LESLEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGG 767 (959)
Q Consensus 689 l~~~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~ 767 (959)
++|++|++++|...+.++ ..+..+++|++|++++|.+. .+| .+..+++|++|++++|......|..+
T Consensus 160 ----------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 160 ----------PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp ----------TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ----------cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence 355555555544443333 25677888888888887655 445 47888999999999997666667788
Q ss_pred CCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|+..
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88999999999999988888888889999999999999998777777788899999999999754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=185.59 Aligned_cols=203 Identities=22% Similarity=0.188 Sum_probs=156.9
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccccc-CCCCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSF-PEGGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 775 (959)
+|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3468999999999887776778899999999999999887777888999999999999999745555 667888999999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|++|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC----HHHhcCccccCEEECC
Confidence 999999988877888899999999999999998766667888999999999999643221 1346678888888888
Q ss_pred ccCCCccc---ccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcC
Q 002156 856 GCDDDMVS---FPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRK 904 (959)
Q Consensus 856 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 904 (959)
+|...... +..+++|+.|++++| .+..+|. .+..+++|++|++++|+.
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 86443331 223456777777774 4555553 466677777777777654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-22 Score=231.64 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=117.4
Q ss_pred CCCceEeeccChhhHH-HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccc--------ccccc--cCCCC
Q 002156 699 PSLKSLGVFECSKLES-IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNC--------GNLVS--FPEGG 767 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~--------~~l~~--~~~~~ 767 (959)
++|++|++++|..... +...+..+++|++|++++|-....++.....+++|++|++++| ..++. +....
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 6888888888885543 3444678888888888887211122333345788888888543 22211 11111
Q ss_pred CCCCCccEEEecCCcCcCccccccC-CCCccceeeec-----cCCCCCCCc------ccCCCCCCcceEEccCCchhhhh
Q 002156 768 LPCAKLMRLEIYGCERLEALPKGLH-NLTSLQELRIG-----RGVELPSLE------EEDGLPTNLQSLDIWGNIEIWKS 835 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~-----~n~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~~ 835 (959)
..+++|++|.+..+.+.+..+..+. .+++|+.|+++ +|...+..| ..+..+++|+.|+++++ ++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~--l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS--CCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc--ccHH
Confidence 2367888887777766554444443 57888888888 232222222 12445678888888762 2222
Q ss_pred hhhhccCCCCCCCccEEEEcccCCCcccc----cCCCCCceEeeccCCCCcccc-cccCCCCCCcEEecCCCcC
Q 002156 836 MIERGRGFHGFSSLRRLEIRGCDDDMVSF----PLPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 836 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 904 (959)
... .....+++|+.|++++|....... ..+++|+.|++++|+.-...+ ..+..+++|++|++++|+.
T Consensus 447 ~~~--~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFE--YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHH--HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHH--HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 111 111236778888888765322222 135778888888876522222 2344577888888888764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=204.89 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=177.4
Q ss_pred cccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 530 LSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 530 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
.+++|++|++++|.+.+..|..+..+++|++|++++|...... ++..+++|++|++++|.... ++ ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-l~------~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-LL------VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE-EE------ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC-CC------CCCCcCE
Confidence 3468999999999888877788889999999999998654333 36677888888888876432 22 2256666
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
|++++|.. ..++.
T Consensus 104 L~L~~N~l------------------------~~~~~------------------------------------------- 116 (487)
T 3oja_A 104 LHAANNNI------------------------SRVSC------------------------------------------- 116 (487)
T ss_dssp EECCSSCC------------------------CCEEE-------------------------------------------
T ss_pred EECcCCcC------------------------CCCCc-------------------------------------------
Confidence 66666421 11110
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCcccc-CCCCcceeeccccccccccCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLH-NLCQLQEIEIWNCGNLVSFPEGGL 768 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~l~~~~~~~~ 768 (959)
..+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.... +|. ..
T Consensus 117 -----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~-~~ 188 (487)
T 3oja_A 117 -----SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QV 188 (487)
T ss_dssp -----CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CC
T ss_pred -----ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc-cc
Confidence 001 5788888888888887788889999999999999999888887776 79999999999996544 443 33
Q ss_pred CCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSS 848 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 848 (959)
.+++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+......+ ..+..++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~ 263 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQR 263 (487)
T ss_dssp CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHH
T ss_pred cCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCC
Confidence 5899999999999987654 458899999999999999984 777888999999999999987633322 23445566
Q ss_pred ccEEEEc
Q 002156 849 LRRLEIR 855 (959)
Q Consensus 849 L~~L~l~ 855 (959)
|+.+++.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=194.90 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=40.5
Q ss_pred eeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCC
Q 002156 91 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 170 (959)
+++|++++|.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc
Confidence 5555555555555555444 455555555555555554 3455555555553 3444543 44555555555554
Q ss_pred cccccc
Q 002156 171 SLEEMP 176 (959)
Q Consensus 171 ~~~~~p 176 (959)
++.+|
T Consensus 113 -l~~l~ 117 (622)
T 3g06_A 113 -LTHLP 117 (622)
T ss_dssp -CCCCC
T ss_pred -CCCCC
Confidence 44444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=191.51 Aligned_cols=257 Identities=26% Similarity=0.294 Sum_probs=140.2
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
.+++.|++++|.+. .+|..+. ++|++|++++|. ++.+|. .+++|++|++++|.. +.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l-~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL-TSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCC-SCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcC-CcCCC-----CCCCCCEEE
Confidence 46888999888875 6676554 789999999884 556765 578899999998874 34543 467888888
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+++|. ++.++. .+++|+.|++.++ +++.++ ..
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N-~l~~lp-----------------------------------------~~--- 139 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLP-----------------------------------------VL--- 139 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSS-CCSCCC-----------------------------------------CC---
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCC-CCCcCC-----------------------------------------CC---
Confidence 88753 333332 2333444443332 122111 00
Q ss_pred cccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA 771 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (959)
+++|++|++++|.+.+ +| ..+++|+.|++++|.+.+ +| ..+++|++|++++|. ++.+|.. .+
T Consensus 140 ------l~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~ 201 (622)
T 3g06_A 140 ------PPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQ-LASLPTL---PS 201 (622)
T ss_dssp ------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCCC---CT
T ss_pred ------CCCCCEEECcCCcCCC-cC---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCC-CCCCCCc---cc
Confidence 0345555555543322 11 123445555555444332 23 224455555555543 2233321 23
Q ss_pred CccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccE
Q 002156 772 KLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRR 851 (959)
Q Consensus 772 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 851 (959)
+|+.|++++|.+. .+|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|
T Consensus 202 ~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N---------------------- 251 (622)
T 3g06_A 202 ELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN---------------------- 251 (622)
T ss_dssp TCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS----------------------
T ss_pred hhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC----------------------
Confidence 4555555555433 2222 12445555555554442 33 23344455555444
Q ss_pred EEEcccCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 852 LEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 852 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
....++. .+++|+.|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 252 ------~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 252 ------RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ------CCSCCCC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ------CCCcCCc-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 3322222 4566777777774 6778888888888888888888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=181.72 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=151.0
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44689999999998877666688999999999999998877777788999999999999997666666778889999999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCC-CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc----E
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR----R 851 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~ 851 (959)
++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|....... ..+..+++|+ .
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcccccee
Confidence 9999998877776789999999999999998863 68888999999999999997443221 2233344444 6
Q ss_pred EEEcccCCCccccc--CCCCCceEeeccCCCCcccccc-cCCCCCCcEEecCCCc
Q 002156 852 LEIRGCDDDMVSFP--LPASLTSLEISFFPNLERLSSS-IVDLQILTELRLYHCR 903 (959)
Q Consensus 852 L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 903 (959)
|+++++........ ...+|+.|++++| .++.+|.. +..+++|++|++++|+
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 77777543333222 1225666666664 45555543 4566666666666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=185.63 Aligned_cols=214 Identities=16% Similarity=0.063 Sum_probs=143.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEEEC
Confidence 467778887777777667777788888888887777665443 7777888888888774 33343 2267788888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+. .+++|+.|++++|.+.+..+..++.+++|++|++++|........ .....+++|++|++++|.
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSC
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCCCc
Confidence 87776655433 356777888888877766666677777788888877764332221 112356777888887765
Q ss_pred CCccccc-CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCC-CCccccceeeccCChh
Q 002156 859 DDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPL 927 (959)
Q Consensus 859 ~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 927 (959)
....... .+++|+.|++++| .++.+|+.+..+++|++|++++| .++.+|.. ...++|+.|++++|+.
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred CcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 4444322 4677888888874 66677767777788888888775 45566653 2356777787777653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-19 Score=187.83 Aligned_cols=220 Identities=18% Similarity=0.110 Sum_probs=149.0
Q ss_pred CceEeeccChhhH-HHHHhh-------cCCCCccEEeecccCCCcccCccc--cCCCCcceeeccccccccccCCCCCCC
Q 002156 701 LKSLGVFECSKLE-SIAERL-------DNNTSLEIISIGSCGNLKILPSGL--HNLCQLQEIEIWNCGNLVSFPEGGLPC 770 (959)
Q Consensus 701 L~~L~l~~~~~~~-~~~~~~-------~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~ 770 (959)
|+.|++++|.+.. .+|..+ ..+++|++|++++|.+.+.+|..+ ..+++|++|++++|..... |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5566666555421 222222 367888888888888877777765 7888888888888854443 6544444
Q ss_pred -----CCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--CcccC--CCCCCcceEEccCCchhhhhhhhhcc
Q 002156 771 -----AKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LEEED--GLPTNLQSLDIWGNIEIWKSMIERGR 841 (959)
Q Consensus 771 -----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~ 841 (959)
++|++|++++|++.+..|..++.+++|++|++++|.+.+. ++..+ +.+++|++|++++|....... ....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HHHH
Confidence 7888888888888777777888888888888888887654 23333 677888888888886432111 1112
Q ss_pred CCCCCCCccEEEEcccCCCccc----ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCcccc
Q 002156 842 GFHGFSSLRRLEIRGCDDDMVS----FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSL 917 (959)
Q Consensus 842 ~~~~l~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 917 (959)
.+..+++|++|++++|...... +..+++|+.|++++| .++.+|..+. ++|++|++++| .++.+|.-.-.++|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L 298 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQV 298 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCC
Confidence 2345678888888886544422 123577888888884 5678887665 78888888875 56666653335778
Q ss_pred ceeeccCCh
Q 002156 918 LRLWIEGCP 926 (959)
Q Consensus 918 ~~L~l~~c~ 926 (959)
++|++++++
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 888888775
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=193.75 Aligned_cols=215 Identities=16% Similarity=0.059 Sum_probs=169.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+..| +..+++|++|++++|. ++.+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 589999999998888778889999999999999988776655 8889999999999985 444442 278999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|++++|......+. .....+++|++|++++|.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCCc
Confidence 99988776554 457899999999999988887888899999999999975443221 122367899999999876
Q ss_pred CCccccc-CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCC-CCccccceeeccCChhH
Q 002156 859 DDMVSFP-LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKK-GLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 859 ~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 928 (959)
....... .+++|+.|++++| .+..+|+.+..+++|+.|++++| .++.+|.. +.+++|+.|++++|+..
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 5544322 5788999999995 67888888889999999999985 46667764 33678999999988654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=186.02 Aligned_cols=245 Identities=19% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCC-cccCcccc-------CCCCcceeeccccccccccCCCC--C
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNL-KILPSGLH-------NLCQLQEIEIWNCGNLVSFPEGG--L 768 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~~~-------~l~~L~~L~l~~~~~l~~~~~~~--~ 768 (959)
++|++|++++|.. .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|...+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4788899998887 555555443 899999998873 35566555 79999999999998777888876 7
Q ss_pred CCCCccEEEecCCcCcCccccccCCC-----CccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCC
Q 002156 769 PCAKLMRLEIYGCERLEALPKGLHNL-----TSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGF 843 (959)
Q Consensus 769 ~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 843 (959)
.+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|+............+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999998877 7777766 9999999999999988888999999999999999985543222212334
Q ss_pred CCCCCccEEEEcccCCCcccc------cCCCCCceEeeccCCCCcccc--cccCCCCCCcEEecCCCcCCCCCCCCCCcc
Q 002156 844 HGFSSLRRLEIRGCDDDMVSF------PLPASLTSLEISFFPNLERLS--SSIVDLQILTELRLYHCRKLKYFPKKGLPS 915 (959)
Q Consensus 844 ~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 915 (959)
..+++|++|++++|....... ..+++|+.|++++| .+...+ ..+..+++|++|++++| .++.+|.... +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-C
Confidence 789999999999986553211 14579999999996 455543 35667899999999996 4678887544 8
Q ss_pred ccceeeccCChhHHHHHhhcCCCccccccCcceEEeCceEeec
Q 002156 916 SLLRLWIEGCPLIEEKCRKDGGQYWDLLTHIPRVQIDLKWVFG 958 (959)
Q Consensus 916 ~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 958 (959)
+|++|++++|.- +.. ..+....++..++++.+.+.|
T Consensus 275 ~L~~L~Ls~N~l-~~~------p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRL-DRN------PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCC-CSC------CCTTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCC-CCC------hhHhhCCCCCEEeccCCCCCC
Confidence 999999999853 211 225566777778888887655
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=173.84 Aligned_cols=176 Identities=16% Similarity=0.042 Sum_probs=130.8
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ...+++|++|++++|. ++.+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 577888888888777667788888889999998887655433 2678889999998884 5577877888888999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|++.+..+..|.++++|++|++++|.+.+..+..+..+++|+.|++++|...... ...+..+++|+.|++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~-- 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP----AGLLNGLENLDTLLLQE-- 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC----TTTTTTCTTCCEEECCS--
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC----HHHhcCcCCCCEEECCC--
Confidence 998887777778888889999999999888666666778888888888888643211 13345667777777766
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
+.++.+|..+..+++|+.|++++|+
T Consensus 182 --------------------N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 --------------------NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --------------------SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --------------------CcCCccChhhcccccCCeEEeCCCC
Confidence 4555666655556666666666554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=170.31 Aligned_cols=201 Identities=17% Similarity=0.119 Sum_probs=140.2
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccC-CCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCG-NLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMR 775 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 775 (959)
|+++++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|..++.++ ..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4578888888888776666678888888888888887 444444567888888888888833444554 45677888888
Q ss_pred EEecCCcCcCccccccCCCCccc---eeeeccC-CCCCCCcccCCCCCCcc-eEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQ---ELRIGRG-VELPSLEEEDGLPTNLQ-SLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
|++++|.+.+ +|. +..+++|+ .|++++| .+.+..+..+..+++|+ +|++++|....... ..+.. +
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~--- 179 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----YAFNG-T--- 179 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----TTTTT-C---
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----hhcCC-C---
Confidence 8888888665 555 77777777 8888888 66655555577788888 88888875321100 11111 3
Q ss_pred EEEEcccCCCcccccCCCCCceEeeccCCCCccccc-ccCCC-CCCcEEecCCCcCCCCCCCCCCccccceeeccCChhH
Q 002156 851 RLEIRGCDDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDL-QILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 851 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 928 (959)
+|+.|++++|..++.+|. .+..+ ++|++|++++ +.++.+|.. ..++|+.|++.+++.+
T Consensus 180 ------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 180 ------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred ------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 455556666545778765 57778 8999999998 457788776 3578999999888753
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=170.72 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=112.3
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+.+++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35677777777766555555667777777777777666544444556677777777777654333333455667777777
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
+++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|....... ..+..+++|++|++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L--- 188 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKL--- 188 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEEC---
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEEC---
Confidence 77777666666666677777777777777665444446666777777777664322111 22334444444444
Q ss_pred CCCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcC
Q 002156 858 DDDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRK 904 (959)
Q Consensus 858 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 904 (959)
++ +.++.+|. .+..+++|++|++++|+.
T Consensus 189 ------------------~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 189 ------------------DN-NQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ------------------CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------------------CC-CcCCcCCHHHhccccCCCEEEecCCCe
Confidence 44 45666665 466778888888888763
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=168.72 Aligned_cols=196 Identities=18% Similarity=0.128 Sum_probs=141.6
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l 778 (959)
..+.++++++.... +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|... .+|. .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 45667777665443 44333 257888888888777666667888888888888888544 4444 4567888888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~-- 166 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP----KGVFDKLTSLKELRLYN-- 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC----HhHccCCcccceeEecC--
Confidence 888877666667788888888888888888776767778888888888888532211 12244455555555554
Q ss_pred CCcccccCCCCCceEeeccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeeccCCh
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGCP 926 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 926 (959)
+.++.+|. .+..+++|++|++++| .++.++...+ .++|+.|++++||
T Consensus 167 --------------------n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 --------------------NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------------------SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------------CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 56777776 5788999999999997 6778887644 5789999998876
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-17 Score=164.09 Aligned_cols=155 Identities=21% Similarity=0.141 Sum_probs=75.2
Q ss_pred cCCCCccEEeecc-cCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCcc---EEEecCC-cCcCccccccCCC
Q 002156 720 DNNTSLEIISIGS-CGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLM---RLEIYGC-ERLEALPKGLHNL 794 (959)
Q Consensus 720 ~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l 794 (959)
..+++|++|++++ |.+.+..+..+..+++|++|++++|. ++.+|. +..+++|+ +|++++| .+.+..+..+.++
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 3344444444444 33333333445555555555555553 233443 44455555 6666666 4433333445566
Q ss_pred Cccc-eeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC-CCccEEEEcccCCCcccccCCCCCce
Q 002156 795 TSLQ-ELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF-SSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 795 ~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
++|+ .|++++|.+. .+|......++|++|++++|+.+.... ...+..+ ++|+.|++++
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~---------------- 214 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQ---------------- 214 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTT----------------
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCC----------------
Confidence 6666 6666666555 333332222566666666663222111 1223334 4444444444
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCCCcC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYHCRK 904 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 904 (959)
+.++.+|.. .+++|+.|+++++..
T Consensus 215 ------N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 ------TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ------CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred ------CccccCChh--HhccCceeeccCccC
Confidence 455555543 566677777766543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=165.33 Aligned_cols=203 Identities=17% Similarity=0.085 Sum_probs=149.7
Q ss_pred ccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCcc
Q 002156 552 SLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLK 631 (959)
Q Consensus 552 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 631 (959)
+.+++++++++++++ .++.+|. ..++.++.|++++|......+..+ ..+++|++|++++|. ++.++...
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~------ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAE-LTKLQVDG------ 74 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGG--TTCTTCCEEECTTSC-CCEEECCS------
T ss_pred ccccCCccEEECCCC-CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHh--hcCCCCCEEECCCCc-cCcccCCC------
Confidence 456778888888776 4445553 234678888888888655555544 677888888888743 22111100
Q ss_pred EEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChh
Q 002156 632 QLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSK 711 (959)
Q Consensus 632 ~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~ 711 (959)
.+ ++|++|++++|.+
T Consensus 75 ----------------------------------------------------------------~l-~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 75 ----------------------------------------------------------------TL-PVLGTLDLSHNQL 89 (290)
T ss_dssp ----------------------------------------------------------------CC-TTCCEEECCSSCC
T ss_pred ----------------------------------------------------------------CC-CcCCEEECCCCcC
Confidence 00 4566666666654
Q ss_pred hHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccccc
Q 002156 712 LESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGL 791 (959)
Q Consensus 712 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 791 (959)
. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|+.|++++|++....+..+
T Consensus 90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 4 445567788899999999988877777889999999999999996554444456788999999999999876666677
Q ss_pred CCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 792 HNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 792 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
..+++|+.|++++|.+. .+|..+...++|+.+++++|+..
T Consensus 169 ~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88999999999999988 77878888889999999999754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-17 Score=171.40 Aligned_cols=113 Identities=14% Similarity=-0.006 Sum_probs=79.8
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 35556667777777776666656667777788888887775443333445677788888888887776666666777888
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 888888888776666667777788888887775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=166.95 Aligned_cols=205 Identities=19% Similarity=0.089 Sum_probs=121.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC-CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP-EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEIL 610 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 610 (959)
++|++|++++|.+.+..+..+.++++|++|++++|......+ .+..+++|++|++++|......+..+ ..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEE
Confidence 567777887777765555577778888888888874433222 35567777777777777554444444 566777777
Q ss_pred EEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhh
Q 002156 611 TISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLE 690 (959)
Q Consensus 611 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 690 (959)
++++|.. ..++..
T Consensus 106 ~l~~n~l-~~~~~~------------------------------------------------------------------ 118 (276)
T 2z62_A 106 VAVETNL-ASLENF------------------------------------------------------------------ 118 (276)
T ss_dssp ECTTSCC-CCSTTC------------------------------------------------------------------
T ss_pred ECCCCCc-cccCch------------------------------------------------------------------
Confidence 7766431 111000
Q ss_pred ccccCCCCCCCceEeeccChhhH-HHHHhhcCCCCccEEeecccCCCcccCccccCCCCcc----eeeccccccccccCC
Q 002156 691 SLEVGNLPPSLKSLGVFECSKLE-SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQ----EIEIWNCGNLVSFPE 765 (959)
Q Consensus 691 ~~~~~~lp~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~l~~~~~ 765 (959)
.++.+ ++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..+..+..+++|+ +|++++|.. ..++.
T Consensus 119 --~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~ 194 (276)
T 2z62_A 119 --PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP 194 (276)
T ss_dssp --CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECT
T ss_pred --hcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc-cccCc
Confidence 00111 356666666655544 2455666677777777777766655555555555555 666666643 33443
Q ss_pred CCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCC
Q 002156 766 GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELP 809 (959)
Q Consensus 766 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 809 (959)
......+|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 195 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 33344466666666666555444455666666666666666653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-16 Score=164.34 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=120.5
Q ss_pred cccceEEEecCCCCCCccccc--cCCCCcceeeeccCCCcccCCC-----CcCCCCCCeEEEecCCCCcccChhhhcCCC
Q 002156 532 CRLEYLTLSGCQGLVKLPQSS--LSLSSLREIVIYKCSSLVSFPE-----VALPSKLKKINIWHCDALKSLPEAWMCDTN 604 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 604 (959)
++|++|++++|.+.+..|..+ ..+++|++|++++|......+. +..+++|++|++++|......+..+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccC
Confidence 679999999999888888777 8899999999999866544332 2347778888888887655444444 566
Q ss_pred CCccEEEEecCCCCcc--ccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeecccccccccccc
Q 002156 605 SSLEILTISSCHSLTY--FGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSK 682 (959)
Q Consensus 605 ~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 682 (959)
++|++|++++|..... ++.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~----------------------------------------------------------- 189 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA----------------------------------------------------------- 189 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT-----------------------------------------------------------
T ss_pred CCCCEEECCCCCCccchhhhH-----------------------------------------------------------
Confidence 7777777776542211 000
Q ss_pred CCcchhhhccccCCCCCCCceEeeccChhhH--HHHH-hhcCCCCccEEeecccCCCcccCccccCC---CCcceeeccc
Q 002156 683 NELPATLESLEVGNLPPSLKSLGVFECSKLE--SIAE-RLDNNTSLEIISIGSCGNLKILPSGLHNL---CQLQEIEIWN 756 (959)
Q Consensus 683 ~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~ 756 (959)
.. .++.+ ++|++|++++|.+.. ..+. .++.+++|++|++++|.+.+..|..+..+ ++|++|++++
T Consensus 190 ~~--------~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 190 AL--------CPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp TS--------CTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred HH--------hhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00 00111 466667776666532 2222 24566777777777766666555555554 4666666666
Q ss_pred cccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCC
Q 002156 757 CGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 757 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 808 (959)
|.. +.+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|++.
T Consensus 261 N~l-~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 261 AGL-EQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCC-CSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCC-Cchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 643 34554442 4666666666655432 22 345555555555555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-18 Score=181.89 Aligned_cols=220 Identities=15% Similarity=0.089 Sum_probs=122.9
Q ss_pred CCceEeeccChhhHHHHHhhcCC--CCccEEeecccCCCcccCccccCCCCcceeeccccccccc-cCCCCCCCCCccEE
Q 002156 700 SLKSLGVFECSKLESIAERLDNN--TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS-FPEGGLPCAKLMRL 776 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L 776 (959)
.++.++++++... +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|..... ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4566666666544 2334444 5667777766655554443 44567777777776654333 55555566677777
Q ss_pred EecCCcCcCccccccCCCCccceeeeccC-CCCC-CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCC-CccEEE
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRG-VELP-SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFS-SLRRLE 853 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~ 853 (959)
++++|.+.+..+..++.+++|++|++++| .+.+ .++..+..+++|++|++++|..++..... ..+..++ +|++|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEE
Confidence 77777665555666666677777777776 3433 24444556667777777776333321111 2234566 677777
Q ss_pred EcccCC-Cc-cc----ccCCCCCceEeeccCCCCc-ccccccCCCCCCcEEecCCCcCCCCCCCC--CCccccceeeccC
Q 002156 854 IRGCDD-DM-VS----FPLPASLTSLEISFFPNLE-RLSSSIVDLQILTELRLYHCRKLKYFPKK--GLPSSLLRLWIEG 924 (959)
Q Consensus 854 l~~~~~-~~-~~----~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~ 924 (959)
+++|.. .. .. ...+++|+.|++++|..++ ..+..+..+++|++|++++|..+...... +-.++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 766531 11 11 1135667777777765443 34446666677777777776533221100 1145677777776
Q ss_pred C
Q 002156 925 C 925 (959)
Q Consensus 925 c 925 (959)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 6
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=170.45 Aligned_cols=222 Identities=15% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCceEeeccChhhHH-HHH--hhcCCCCccEEeecccCCCcccCccc--cCCCCcceeeccccccccccC----CCCCCC
Q 002156 700 SLKSLGVFECSKLES-IAE--RLDNNTSLEIISIGSCGNLKILPSGL--HNLCQLQEIEIWNCGNLVSFP----EGGLPC 770 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~ 770 (959)
.++.+.+.++..... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567777777665432 111 22345679999999999888888887 889999999999997665444 223468
Q ss_pred CCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--Cc--ccCCCCCCcceEEccCCchhhhhhhhhccCCCCC
Q 002156 771 AKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LE--EEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF 846 (959)
Q Consensus 771 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 846 (959)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+. ++ ..++.+++|++|++++|........ ....+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcC
Confidence 8999999999999888888899999999999999987642 22 2236788999999999975321111 11123567
Q ss_pred CCccEEEEcccCCCccc---cc---CCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCcccccee
Q 002156 847 SSLRRLEIRGCDDDMVS---FP---LPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRL 920 (959)
Q Consensus 847 ~~L~~L~l~~~~~~~~~---~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 920 (959)
++|++|++++|...... .. .+++|+.|++++| .++.+|..+. ++|++|++++| .++.+|...-.++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEE
Confidence 89999999997655442 11 2378999999995 6778887664 89999999986 56666654456889999
Q ss_pred eccCCh
Q 002156 921 WIEGCP 926 (959)
Q Consensus 921 ~l~~c~ 926 (959)
++++++
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 999886
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=165.58 Aligned_cols=152 Identities=15% Similarity=0.049 Sum_probs=89.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4666666666655441 25666666666666666665555555666666666666666544333334556666666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|++|++++|...... ...+..+++|+.|++++
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccC
Confidence 666665555555566666666666666666555545566666666666666532211 12344555555555555
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-18 Score=182.24 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccc--cCCCCCCCC-Ccc
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVS--FPEGGLPCA-KLM 774 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~-~L~ 774 (959)
+|++|++++|...+..+..++.+++|++|++++|..++ .++..+..+++|++|++++|..++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 44444444444444444444445555555555542222 1333344455555555555522221 233333444 555
Q ss_pred EEEecCCc--Cc-CccccccCCCCccceeeeccCC-CCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCcc
Q 002156 775 RLEIYGCE--RL-EALPKGLHNLTSLQELRIGRGV-ELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLR 850 (959)
Q Consensus 775 ~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 850 (959)
+|++++|. +. +.+|..+..+++|+.|++++|. +....+..+..+++|++|++++|........ ..+..+++|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~ 275 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---LELGEIPTLK 275 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---GGGGGCTTCC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---HHHhcCCCCC
Confidence 55555552 22 2334444555566666666665 3334444555556666666666642221111 1234455666
Q ss_pred EEEEccc
Q 002156 851 RLEIRGC 857 (959)
Q Consensus 851 ~L~l~~~ 857 (959)
+|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 6665554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=167.15 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=93.5
Q ss_pred cCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccce
Q 002156 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHH 163 (959)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (959)
.+..+++|++|++++|.++.++. +..+++|++|+|++|+++.+| .+..+++|++|++++| .+..+|. ++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 34455555555555555555543 555555555555555555543 3555555555555553 3333432 555555555
Q ss_pred eecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEE
Q 002156 164 HNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELL 243 (959)
Q Consensus 164 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 243 (959)
|++++|. +..++. ++.++ +|+.|+
T Consensus 134 L~l~~n~-l~~~~~-l~~l~------------------------------------------------------~L~~L~ 157 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGLT------------------------------------------------------NLQYLS 157 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCT------------------------------------------------------TCCEEE
T ss_pred EECCCCc-cCcCcc-ccCCC------------------------------------------------------CccEEE
Confidence 5555554 444332 33333 444444
Q ss_pred EEeccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcC
Q 002156 244 LRWTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLK 323 (959)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 323 (959)
+++|..++ +..+..+++|+.|+++++....++. +. .+++|++|++++|.+.+.. .+..+++|+
T Consensus 158 l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 158 IGNAQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp CCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred ccCCcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 44443321 0114455667777777776666654 22 3778888888888775443 477788888
Q ss_pred eeEecCCC
Q 002156 324 HLTVRGMS 331 (959)
Q Consensus 324 ~L~L~~~~ 331 (959)
+|++++|+
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 88888765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=155.53 Aligned_cols=131 Identities=16% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34555555555444444444444455555555444444444444444445555555444333222233344444444444
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 444444333333444444444444444444333333444444444444444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-16 Score=162.75 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=117.6
Q ss_pred CCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCc
Q 002156 34 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 113 (959)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~ 113 (959)
++++++.+.++.+.. ++.+..+++|+.|.+.++. ...+++ +..+++|++|++++|.++.+| .+..+++
T Consensus 41 ~~L~~L~l~~~~i~~---l~~~~~l~~L~~L~L~~n~-------i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQ-------ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred CCcCEEEeeCCCccC---chhhhccCCCCEEEccCCc-------CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 478999998776543 4567889999999998765 445555 899999999999999999886 6999999
Q ss_pred ccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceece
Q 002156 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCN 190 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 190 (959)
|++|++++|+++.+|. +..+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|++|++
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEEC
Confidence 9999999999999865 999999999999995 6666664 9999999999999998 777765 777777777643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=156.63 Aligned_cols=156 Identities=19% Similarity=0.070 Sum_probs=101.5
Q ss_pred HHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCC-CCccEEEecCCcCcCccccccCC
Q 002156 716 AERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPC-AKLMRLEIYGCERLEALPKGLHN 793 (959)
Q Consensus 716 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 793 (959)
|..|..+++|++|++++|.+....+..+....++..|++.++..+..++. .+..+ ..++.|++++|.+.. +|.....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcc
Confidence 34566777888888888777666555566667777888877666666654 33343 357778888887654 4444445
Q ss_pred CCccceeeeccCCCCCCCcc-cCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCce
Q 002156 794 LTSLQELRIGRGVELPSLEE-EDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTS 872 (959)
Q Consensus 794 l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 872 (959)
.++|+.|++++|...+.+|. .+..+++|++|++++|... ..+...+.+|+.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~----------------------------~lp~~~~~~L~~ 227 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH----------------------------SLPSYGLENLKK 227 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC----------------------------CCCSSSCTTCCE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC----------------------------ccChhhhccchH
Confidence 56788888876555555654 4567777777777777421 111223345555
Q ss_pred EeeccCCCCcccccccCCCCCCcEEecCC
Q 002156 873 LEISFFPNLERLSSSIVDLQILTELRLYH 901 (959)
Q Consensus 873 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 901 (959)
|.+.+++.++.+| .+..+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5555667778888 577888888888765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=154.65 Aligned_cols=131 Identities=16% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 45555555554444444444455555555555544444444444455555555555543222222223444555555555
Q ss_pred CCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 780 GCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 554444333344455555555555555544444344444555555555554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-17 Score=183.90 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=12.8
Q ss_pred ccccc-CCCCCCcEEecCCCc
Q 002156 884 LSSSI-VDLQILTELRLYHCR 903 (959)
Q Consensus 884 l~~~~-~~l~~L~~L~l~~c~ 903 (959)
+|..+ .++++|++|++++|+
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHhcCCCceEEEccCCc
Confidence 55555 456777777777754
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-17 Score=180.84 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCCceEeeccChhhHHHHH----hhcCC-CCccEEeecccCCCcccCcc----ccC-CCCcceeecccccccc----ccC
Q 002156 699 PSLKSLGVFECSKLESIAE----RLDNN-TSLEIISIGSCGNLKILPSG----LHN-LCQLQEIEIWNCGNLV----SFP 764 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~p~~----~~~-l~~L~~L~l~~~~~l~----~~~ 764 (959)
++|++|++++|.+.+..+. .+..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.... .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 4667777777766543333 33444 67777777776654443322 222 2467777777764432 122
Q ss_pred CCCCCCC-CccEEEecCCcCcCcccccc----CCC-CccceeeeccCCCCCC----CcccCCC-CCCcceEEccCCchhh
Q 002156 765 EGGLPCA-KLMRLEIYGCERLEALPKGL----HNL-TSLQELRIGRGVELPS----LEEEDGL-PTNLQSLDIWGNIEIW 833 (959)
Q Consensus 765 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~ 833 (959)
..+..++ +|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+... ++..+.. .++|++|++++|....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 2222333 67777777776655444322 233 3677777777666542 2323332 3466666666665433
Q ss_pred hhhhhhccCCCCCCCccEEEEccc
Q 002156 834 KSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 834 ~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
.........+..+++|++|++++|
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccC
Confidence 222111123345555666666554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-16 Score=172.87 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=163.2
Q ss_pred CCCCCCceEeeccChhhHHHH----HhhcCCC-CccEEeecccCCCcccCccccCC-----CCcceeeccccccccccCC
Q 002156 696 NLPPSLKSLGVFECSKLESIA----ERLDNNT-SLEIISIGSCGNLKILPSGLHNL-----CQLQEIEIWNCGNLVSFPE 765 (959)
Q Consensus 696 ~lp~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~l~~~~~ 765 (959)
..|++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 445679999999998776544 7788898 89999999998877666656554 9999999999975544333
Q ss_pred C----CCCC-CCccEEEecCCcCcCcccccc----CC-CCccceeeeccCCCCCCCcc----cCCCCC-CcceEEccCCc
Q 002156 766 G----GLPC-AKLMRLEIYGCERLEALPKGL----HN-LTSLQELRIGRGVELPSLEE----EDGLPT-NLQSLDIWGNI 830 (959)
Q Consensus 766 ~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~----~~~~~~-~L~~L~l~~n~ 830 (959)
. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+....+. .+...+ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 3334 799999999999876655443 34 36999999999988854332 334444 99999999997
Q ss_pred hhhhhhhhhccCCCCC-CCccEEEEcccCCCccccc--------CCCCCceEeeccCCCCcccc-----cccCCCCCCcE
Q 002156 831 EIWKSMIERGRGFHGF-SSLRRLEIRGCDDDMVSFP--------LPASLTSLEISFFPNLERLS-----SSIVDLQILTE 896 (959)
Q Consensus 831 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~l~-----~~~~~l~~L~~ 896 (959)
............+... ++|++|++++|........ .+++|++|++++| .++..+ ..+..+++|++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccE
Confidence 6544433323344556 5999999999764442111 3569999999996 565543 24578899999
Q ss_pred EecCCCcCCCCCCC--------C-CCccccceeeccCCh
Q 002156 897 LRLYHCRKLKYFPK--------K-GLPSSLLRLWIEGCP 926 (959)
Q Consensus 897 L~l~~c~~l~~l~~--------~-~~~~~L~~L~l~~c~ 926 (959)
|++++|. +..+.. . .-.++|+.|++++++
T Consensus 258 L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 258 VYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999975 122211 1 124678999999986
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=157.50 Aligned_cols=220 Identities=19% Similarity=0.084 Sum_probs=163.3
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeecccccccccc-CCCCCCCCCcc
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLVSF-PEGGLPCAKLM 774 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~ 774 (959)
+|+++++|++++|.+....+.+|.++++|++|+|++|.+.+.+| ..|.++++++++.+.++..+..+ |..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 35689999999998776555678999999999999999888775 45788888887555444455555 56678899999
Q ss_pred EEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcc-cCCCC-CCcceEEccCCchhhhhhhhhccCCCCCCCccEE
Q 002156 775 RLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEE-EDGLP-TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRL 852 (959)
Q Consensus 775 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 852 (959)
+|++++|.+....+..+....++..|++.++.....++. .+..+ ..++.|++++|..... +.......+|++|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-----~~~~f~~~~L~~l 182 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-----HNSAFNGTQLDEL 182 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-----CTTSSTTEEEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-----ChhhccccchhHH
Confidence 999999998776666666777888999977554444443 45554 4689999999964321 1223345689999
Q ss_pred EEcccCCC-ccc---ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccC
Q 002156 853 EIRGCDDD-MVS---FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEG 924 (959)
Q Consensus 853 ~l~~~~~~-~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 924 (959)
++.++... .+. +.-+++|+.|++++| .++.+|.. .+.+|++|.+.+|+.++.+|.-.-.++|+.+++.+
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99864332 222 345678999999995 89999963 36789999999999999999744468899999865
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-16 Score=173.66 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=152.9
Q ss_pred CCCceEeeccChhhHH----HHHhhcCCCCccEEeecccCC---CcccCccc-------cCCCCcceeecccccccc---
Q 002156 699 PSLKSLGVFECSKLES----IAERLDNNTSLEIISIGSCGN---LKILPSGL-------HNLCQLQEIEIWNCGNLV--- 761 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~p~~~-------~~l~~L~~L~l~~~~~l~--- 761 (959)
++|++|++++|.+... ++..+..+++|++|++++|.. .+.+|..+ ..+++|++|++++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5788888888877665 334466888888888888633 23444444 678888888888886554
Q ss_pred -ccCCCCCCCCCccEEEecCCcCcCcccccc----CCC---------CccceeeeccCCCC-CCCc---ccCCCCCCcce
Q 002156 762 -SFPEGGLPCAKLMRLEIYGCERLEALPKGL----HNL---------TSLQELRIGRGVEL-PSLE---EEDGLPTNLQS 823 (959)
Q Consensus 762 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~l~~n~~~-~~~~---~~~~~~~~L~~ 823 (959)
.+|..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|.+. ..++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 355556677888888888888754333333 333 78888888888876 3344 34556788888
Q ss_pred EEccCCchhhhhhhh-hccCCCCCCCccEEEEcccCCCc-------ccccCCCCCceEeeccCCCCcc-----ccccc--
Q 002156 824 LDIWGNIEIWKSMIE-RGRGFHGFSSLRRLEIRGCDDDM-------VSFPLPASLTSLEISFFPNLER-----LSSSI-- 888 (959)
Q Consensus 824 L~l~~n~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-- 888 (959)
|++++|......... ....+..+++|++|++++|.... ..+...++|+.|++++|. +.. +|..+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhh
Confidence 888888654322111 11256678888888888865421 112356789999999865 544 45566
Q ss_pred CCCCCCcEEecCCCcCCCC-----CCCCC--CccccceeeccCCh
Q 002156 889 VDLQILTELRLYHCRKLKY-----FPKKG--LPSSLLRLWIEGCP 926 (959)
Q Consensus 889 ~~l~~L~~L~l~~c~~l~~-----l~~~~--~~~~L~~L~l~~c~ 926 (959)
..+++|++|++++|. ++. +|..- -.++|+.|++++|+
T Consensus 271 ~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 271 LENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 448999999999975 444 55421 14899999999985
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-15 Score=146.76 Aligned_cols=133 Identities=16% Similarity=0.014 Sum_probs=90.9
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35778888887776655555567777777777777766655555567777777777777754433333456677777777
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 77777666555556777777777777777775555456667777777777774
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=142.81 Aligned_cols=105 Identities=22% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++|+.|++++|.+. .+| .+..+++|++|++++| ....++ .+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345555555554443 333 3555555555555555 223222 344455555555555555544455555555555555
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+++|.+.+..+..++.+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55555554445455555555555555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=151.39 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=110.1
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.++++|+.|++++|.++.+| .+..+++|++|++++|+++.++. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEE
Confidence 56777888888888887775 37778888888888888887765 788888888888874 455555 478888888888
Q ss_pred cCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEE
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (959)
+++|. +..++ .++.+++|++|++ +
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~l------------------------------------------------------~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLYL------------------------------------------------------G 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEEC------------------------------------------------------C
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEEc------------------------------------------------------c
Confidence 88887 66553 4555555555533 2
Q ss_pred eccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 002156 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHL 325 (959)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 325 (959)
+|..+. +..+..+++|+.|++++|....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 143 ~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 143 NNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp SSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred CCcCCc-------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 221110 0112233455555555555555544 32 36777777777776644 4557777788888
Q ss_pred EecCCC
Q 002156 326 TVRGMS 331 (959)
Q Consensus 326 ~L~~~~ 331 (959)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 887764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=142.12 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=117.4
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 775 (959)
+|+.+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|... .+|. .+..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCE
Confidence 3468999999999887776778899999999999999888888899999999999999999654 5554 4678999999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|++++|++.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999998888889999999999999999999777777888999999999999753
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=147.67 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|+.|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 3556666665544322 235556666666666665544333 5566666666666663 333332 555566666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|...... .+..+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~------~l~~l~~---------- 179 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV------PLAGLTK---------- 179 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG------GGTTCTT----------
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch------hhcCCCc----------
Confidence 66655442 3455566666666666665533 24555566666666666422110 0333444
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
|+.|++++ +.++.++ .+..+++|+.|++++|+
T Consensus 180 -----------L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 -----------LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----------CCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred -----------cCEEECCC-CcCCCCh-hhccCCCCCEEECcCCc
Confidence 44444444 4666666 47777888888888764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=155.43 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=97.8
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
+++.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.. +.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECC
Confidence 45555555554433 33333 255666666555444 344 2355666666666533 33554 332 56666666
Q ss_pred CCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCC
Q 002156 780 GCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDD 859 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 859 (959)
+|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.... .+ . +. ++|+.|++++|..
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp----~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP----E-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC----C-CC--TTCCEEECCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc----h-hh--CCCCEEECcCCCC
Confidence 665544 333 45566666666666553 443 34566666666664221 00 1 22 5666666666544
Q ss_pred CcccccCCCCC-------ceEeeccCCCCcccccccCCCCCCcEEecCCCcCCC
Q 002156 860 DMVSFPLPASL-------TSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLK 906 (959)
Q Consensus 860 ~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 906 (959)
..++. ++.+| +.|++++ +.++.+|..+..+++|+.|++++|+.-.
T Consensus 193 ~~lp~-~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 193 ESLPA-VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC-CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cchhh-HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 43333 33455 7888887 4677888877778888888888876543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-14 Score=139.61 Aligned_cols=135 Identities=12% Similarity=-0.058 Sum_probs=111.9
Q ss_pred CCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 698 PPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
|+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3577899999888766543 457889999999999988877777788899999999999986655555567788899999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999988888888889999999999999998777888888999999999999744
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=138.78 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=112.6
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 34789999999999888778889999999999999988766556667889999999999986544444456788999999
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999866 67788889999999999999998666667888999999999999754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=136.27 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=117.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|++|++++|.+. .+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57888888888766 444 588899999999998843 333 46888999999999999776667788888999999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEccc
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGC 857 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (959)
++|.+.+..|..++.+++|++|++++|...+.+| .+..+++|+.|++++|..... ..+..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~------~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY------RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC------TTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh------HHhccCCCCCEEEeeCc
Confidence 9999888778888999999999999998555676 688889999999999964321 13566777777777763
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-14 Score=146.66 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred CCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCC
Q 002156 272 TNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMS 331 (959)
Q Consensus 272 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 331 (959)
++|+.|++++|....+| .+. .+++|+.|++++|.+.+. ..+..+++|+.|++++|+
T Consensus 128 ~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 34444444455444444 232 367788888888877554 667788888888888764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=151.76 Aligned_cols=176 Identities=24% Similarity=0.230 Sum_probs=141.1
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
.+|+.|++++|.+.+ +|..+ +++|++|++++|. ++.+| ..+++|++|++++|.+.+ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 489999999988765 77665 4899999999995 45788 456899999999999876 666 655 9999999
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCc
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLE 882 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 882 (959)
++|.+.+ +|. .+++|+.|++++|.... . ...+++|++|++++|....++. +.++|+.|++++| .++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l-------p~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-L-------PELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTN-LLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-------CCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-C-------CCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCC-CCC
Confidence 9999986 775 68999999999997432 1 1257899999999987655444 5589999999995 788
Q ss_pred ccccccCCCCCC-------cEEecCCCcCCCCCCCCC-CccccceeeccCChh
Q 002156 883 RLSSSIVDLQIL-------TELRLYHCRKLKYFPKKG-LPSSLLRLWIEGCPL 927 (959)
Q Consensus 883 ~l~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~ 927 (959)
.+|. +.. +| ++|++++| .++.+|... -.++|+.|++++|+.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred chhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 9997 654 78 99999985 677888742 268999999999974
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=159.79 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=68.3
Q ss_pred CCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhccccccee
Q 002156 85 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHH 164 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (959)
+.++++|+.|++++|.+..+| .+..+++|++|+|++|+|..+|. +..+++|++|+|++| .+..+| .++.+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 356777777777777777775 47777777777777777777755 777777777777774 455555 57777777777
Q ss_pred ecCCCCcccccccccccccCCceec
Q 002156 165 NNSNTDSLEEMPLGIGKLTCLQTLC 189 (959)
Q Consensus 165 ~l~~~~~~~~~p~~i~~L~~L~~L~ 189 (959)
++++|. +..+| .++.+++|+.|+
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEE
T ss_pred EecCCC-CCCCc-cccCCCccCEEE
Confidence 777776 55543 355555555553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=131.23 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555566555554444445555555556665555444444555555555555555555554444444455555555555
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
++|.+.+..|..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 5555555555555555555555555554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=154.08 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|++|+|++|. +..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 4667777776664432 2 46777777777777776655443 6777778888887774 34444 5667777777777
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|....... +..+++|+.|++++
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~-- 184 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSK-- 184 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCS--
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcC--
Confidence 77776542 3467777777777777777644 356677777777777775322111 34455555555555
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
+.+..+| .+..+++|+.|++++|+
T Consensus 185 --------------------N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 --------------------NHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --------------------SCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred --------------------CCCCCCh-HHccCCCCCEEEccCCc
Confidence 2444554 45566666666666654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=132.34 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=121.8
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
.++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46899999999988776666788999999999999865443334567889999999999998876666788999999999
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCC
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNL 881 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l 881 (959)
+++|.+.+..+..+..+++|++|++++|...... ...+..+++|++|++++|... ..+++|+.|+++.+..-
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecCCCee----cCCCCHHHHHHHHHhCC
Confidence 9999998766666888999999999999643221 134667788888888775211 13446666777666555
Q ss_pred cccccccCCCCC
Q 002156 882 ERLSSSIVDLQI 893 (959)
Q Consensus 882 ~~l~~~~~~l~~ 893 (959)
+.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 566665554443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=131.38 Aligned_cols=149 Identities=16% Similarity=0.048 Sum_probs=92.9
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
-+.++.+++ .++.+|..+ .++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666553 344555544 37777777777765555566667777777777777776555555667777777777777
Q ss_pred CCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccc
Q 002156 805 GVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERL 884 (959)
Q Consensus 805 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 884 (959)
|.+.+..+..+..+++|++|++++|.... .+..+..+++|+.|++++ +.++.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~----------------------N~l~~~ 150 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQ----------------------NQLKSI 150 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCS----------------------SCCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCC----------------------CcCCcc
Confidence 77775555556677777777777775321 112233444444444444 456666
Q ss_pred cc-ccCCCCCCcEEecCCCc
Q 002156 885 SS-SIVDLQILTELRLYHCR 903 (959)
Q Consensus 885 ~~-~~~~l~~L~~L~l~~c~ 903 (959)
|. .+..+++|++|++++|+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSC
T ss_pred CHHHHhCCCCCCEEEeeCCC
Confidence 64 46667777777777765
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=130.83 Aligned_cols=126 Identities=11% Similarity=-0.021 Sum_probs=66.1
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccC-ccccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILP-SGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+.++++++.... +|..+ ...+++|++++|.+.+..| ..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666554332 33322 2234556665555544432 2345556666666665543333333455555666666666
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 65555555555555666666666665555555555555555555555553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=146.23 Aligned_cols=132 Identities=14% Similarity=-0.044 Sum_probs=72.2
Q ss_pred CCCceEeeccChhhHHHHHhhc-CCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFECSKLESIAERLD-NNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4566666666655554444454 566666666666655555455566666666666666643333333455556666666
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCcccC---CCCCCcceEEccCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED---GLPTNLQSLDIWGNI 830 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~ 830 (959)
+++|.+....|..|..+++|+.|++++|.+....+..+ ..+++|+.|++++|.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 66666555555555666666666666665553322222 345555555555553
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-13 Score=124.53 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=105.4
Q ss_pred cCCcccEEeccccCCCCCCccc-ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcc-cchhhhcc
Q 002156 57 DIQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRA-LPESVNKL 134 (959)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i~~L 134 (959)
..++|+.|.+.++.- . ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.|.. +|..++.+
T Consensus 15 ~~~~l~~L~l~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRS------NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBC------BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCcC------ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 347789998877642 2 36777779999999999999999888 779999999999999999997 78888889
Q ss_pred ccccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceece
Q 002156 135 YNLHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCN 190 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 190 (959)
++|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++
T Consensus 88 ~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999995 566654 679999999999999998 888876 4888999998864
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=127.30 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=90.2
Q ss_pred CcccEEeccccCCCCCCccc-ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcc-cchhhhcccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRA-LPESVNKLYN 136 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i~~L~~ 136 (959)
++|+.|.+.++.- . ..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|++.. +|..++.+++
T Consensus 24 ~~L~~L~l~~n~l------~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKS------NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBC------BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCCC------ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 5677777766541 1 25666667777888888888777777 667777888888888887776 5666677888
Q ss_pred ccEEeccCcchhhhhh--HhhhcccccceeecCCCCccccccc----ccccccCCceeceEEec
Q 002156 137 LHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 137 L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 194 (959)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++..+.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888774 556654 567777788888888777 667665 47777777777665544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-13 Score=146.03 Aligned_cols=160 Identities=14% Similarity=-0.005 Sum_probs=113.5
Q ss_pred cccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCcc
Q 002156 663 SLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSG 742 (959)
Q Consensus 663 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 742 (959)
+.++.|+++++. +.. .+...+.. .+ ++|++|++++|.+....+..|..+++|++|++++|.+.+..+..
T Consensus 39 ~~l~~L~Ls~N~-l~~-l~~~~~~~--------~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNN-LSR-LRAEWTPT--------RL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSSC-CCE-ECTTSSSS--------CC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCEEECCCCC-CCc-cChhhhhh--------cc-cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 457888888753 322 11111110 22 58888888888877766677888888888888888877666667
Q ss_pred ccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCcccccc---CCCCccceeeeccCCCCCCCcccCCCCC
Q 002156 743 LHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGL---HNLTSLQELRIGRGVELPSLEEEDGLPT 819 (959)
Q Consensus 743 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 819 (959)
+..+++|++|+|++|......|..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+....+..+..++
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 8888888888888887665566777888888888888888766544444 5688888888888888855545566666
Q ss_pred C--cceEEccCCchhh
Q 002156 820 N--LQSLDIWGNIEIW 833 (959)
Q Consensus 820 ~--L~~L~l~~n~~~~ 833 (959)
. ++.|++++|+...
T Consensus 188 ~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 188 AWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHTTEECCSSCEEC
T ss_pred HhhcceEEecCCCccC
Confidence 5 4788888887543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=123.61 Aligned_cols=138 Identities=24% Similarity=0.255 Sum_probs=114.5
Q ss_pred ccCCCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcc-cccccc
Q 002156 31 SFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-LPDSIG 109 (959)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~ 109 (959)
..+++++++.+..+.+........+..+++|+.|.+.++. ...+ ..+..+++|++|++++|.++. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 4567899999988876511112335788999999998765 3344 777999999999999999988 687888
Q ss_pred ccCcccEEeccCCCCcccc--hhhhccccccEEeccCcchhhhhhH----hhhcccccceeecCCCCcccccccc
Q 002156 110 DLRYLRYLNLSGTHIRALP--ESVNKLYNLHTLLLEDCRELKKLCA----DMGNLIKLHHHNNSNTDSLEEMPLG 178 (959)
Q Consensus 110 ~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 178 (959)
.+++|++|++++|+|+.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ..++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999986 78999999999999995 6667765 69999999999999998 8888754
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=125.62 Aligned_cols=131 Identities=19% Similarity=0.118 Sum_probs=107.7
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCC-ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhh
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESV 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i 131 (959)
..+.++.+|+.|.+.++. ...+ +.+..+. +|++|++++|.++.+ ..++.+++|++|+|++|+|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~-------l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-------IPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC-------Cchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 456678899999888765 3344 4454444 999999999999888 67999999999999999999997655
Q ss_pred -hccccccEEeccCcchhhhhhH--hhhcccccceeecCCCCcccccccc----cccccCCceeceEEec
Q 002156 132 -NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTDSLEEMPLG----IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 194 (959)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...+.
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 89999999999995 6778887 78999999999999998 8888875 8889999999775553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=132.33 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=64.5
Q ss_pred cccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhcc
Q 002156 55 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKL 134 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L 134 (959)
+.++++|+.|.+.++. ...++ .+..+++|++|++++|.++.+|. +.++++|++|+|++|+++.+|....
T Consensus 37 ~~~l~~L~~L~l~~n~-------i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-------IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred hhhcCcCcEEECcCCC-------cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--
Confidence 4455556666555443 22333 45556666666666666655544 5566666666666666655543222
Q ss_pred ccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCcee
Q 002156 135 YNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
.+|++|++++| .+..+| .++.+++|++|++++|. ++.+| .++.+++|++|
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVL 155 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEE
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEE
Confidence 55666666653 344443 35566666666666665 55553 35555555555
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-13 Score=128.14 Aligned_cols=132 Identities=17% Similarity=0.063 Sum_probs=95.2
Q ss_pred CCCCccEEeecccCCC-cccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccce
Q 002156 721 NNTSLEIISIGSCGNL-KILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQE 799 (959)
Q Consensus 721 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 799 (959)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.. ..+ ..+..+++|++|++++|.+.+.+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3466777777777766 56777778888888888888844 444 56777888888888888887767777777888888
Q ss_pred eeeccCCCCCC-CcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 800 LRIGRGVELPS-LEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 800 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|.+.+. .+..++.+++|++|++++|+...... .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 88888887753 33677888888888888886433221 001235667888888765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=124.74 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=89.3
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhh-Hhh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLC-ADM 155 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i 155 (959)
..++|..+. ++|++|++++|.++.+|..|..+++|++|+|++|+|+.++ ..|.++++|++|+|++| .+..+| ..|
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 455665553 4788889999998888888888999999999999988885 56888999999999885 455554 458
Q ss_pred hcccccceeecCCCCcccccccc-cccccCCceeceEEec
Q 002156 156 GNLIKLHHHNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVG 194 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 194 (959)
..+++|++|++++|. +..+|.+ +..+++|++|++..+.
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 888999999999888 8888865 7888888888665444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=125.27 Aligned_cols=128 Identities=13% Similarity=-0.009 Sum_probs=92.3
Q ss_pred ceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 702 KSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 702 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+.++++++.+ +.+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4455555443 23333222 2677777777766555443 377888888888888866665677777888888888888
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|++.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877777777888888888888888888777877888888888888888643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-13 Score=156.59 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=137.1
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccC-------------CCcccCccccCCCCcceee-ccccc------
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCG-------------NLKILPSGLHNLCQLQEIE-IWNCG------ 758 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~p~~~~~l~~L~~L~-l~~~~------ 758 (959)
+.|+.|++++|.+ +.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.
T Consensus 349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 5889999998876 4789999999999999986654 4566677888888999888 55442
Q ss_pred ------cccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 759 ------NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 759 ------~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+..+|. ..|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 428 l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 428 KFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1222221 258999999998765 665 899999999999999988 78888999999999999999643
Q ss_pred hhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeeccCCCCccc--ccccCCCCCCcEEecCCCcCCCCCCC
Q 002156 833 WKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFFPNLERL--SSSIVDLQILTELRLYHCRKLKYFPK 910 (959)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~ 910 (959)
.. + .+..+++|+.|++++ +.++.+ |..+..+++|++|++++|+ ++.+|.
T Consensus 500 ~l-----p-~l~~l~~L~~L~Ls~----------------------N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 500 NV-----D-GVANLPRLQELLLCN----------------------NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CC-----G-GGTTCSSCCEEECCS----------------------SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CC-----c-ccCCCCCCcEEECCC----------------------CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 21 1 345566666666655 567776 7788889999999999865 555544
Q ss_pred CC-----Cccccceee
Q 002156 911 KG-----LPSSLLRLW 921 (959)
Q Consensus 911 ~~-----~~~~L~~L~ 921 (959)
.. ..++|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 21 146777765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-12 Score=151.41 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=98.5
Q ss_pred CCeEEEEeecccccccccccccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCc
Q 002156 34 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 113 (959)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~ 113 (959)
..++++.+..+..... ........+|+.+.+..... . ++.....+..+..++.|++|+|++|.+..+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~-~-~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD-I-ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc-c-ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 4577777765544332 12233444455554443221 0 111234455669999999999999999999988889999
Q ss_pred ccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEe
Q 002156 114 LRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 114 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 193 (959)
|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|++|++|+|++|. ++.+|.+|++|++|++|++..+
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 99999999999999999999999999999995 577999999999999999999998 8999999999999999976444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-11 Score=125.85 Aligned_cols=125 Identities=12% Similarity=-0.034 Sum_probs=92.5
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCcc-EE
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLM-RL 776 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~-~L 776 (959)
.+++.+.+.+.-...........+++|+.+++++|......+..|..+++|+++++.+| +..++. .|.+|++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 46677777765433333333345889999999888766666677888999999999886 555554 677888898 99
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEc
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDI 826 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 826 (959)
++.+ .+...-+..|.++++|+.+++++|.+...-+.+|..+++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 545555678888999999999888888666667888888887753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-12 Score=122.07 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=73.2
Q ss_pred cccccccCCCCCceeEEEecCCCCccccc--cccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhh-H
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPD--SIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLC-A 153 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~ 153 (959)
..++|..+.. +|++|++++|.++.++. .|..+++|++|+|++|+|+.+ |..|+++++|++|+|++| .+..+| .
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNK 96 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHH
Confidence 3555555533 67777777777777654 367777777777777777766 566777777777777774 344443 3
Q ss_pred hhhcccccceeecCCCCccccc-ccccccccCCceeceEEe
Q 002156 154 DMGNLIKLHHHNNSNTDSLEEM-PLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 154 ~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~ 193 (959)
.|+.+++|++|++++|. +..+ |..++.+++|++|++..+
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 37777777777777777 4444 455777777777755443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-12 Score=154.61 Aligned_cols=191 Identities=15% Similarity=0.057 Sum_probs=109.6
Q ss_pred CceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecC
Q 002156 701 LKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYG 780 (959)
Q Consensus 701 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 780 (959)
+..+++..|... ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.. +.+|..+..+++|++|+|++
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcC
Confidence 344444433332 55778899999999999998876 6777788999999999999954 48888889999999999999
Q ss_pred CcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCC-CCccEEEEcccCC
Q 002156 781 CERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGF-SSLRRLEIRGCDD 859 (959)
Q Consensus 781 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 859 (959)
|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++|+.....+.. +..+ ..+..+++++
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~~~~~~~~l~l~~--- 350 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI----LTEKSVTGLIFYLRD--- 350 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH----HHHHHHHHHHHHHHH---
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH----HhhcchhhhHHhhcc---
Confidence 9977 77899999999999999999887 78888999999999999999865433221 1111 0111234444
Q ss_pred CcccccCCCCCceEeeccCC----CCccccc----ccCCCCCCcEEecCCCc
Q 002156 860 DMVSFPLPASLTSLEISFFP----NLERLSS----SIVDLQILTELRLYHCR 903 (959)
Q Consensus 860 ~~~~~~~~~~L~~L~l~~~~----~l~~l~~----~~~~l~~L~~L~l~~c~ 903 (959)
+...+.+|..|+.|+++.+. .+..++. .+..+..++...+++|-
T Consensus 351 N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 351 NRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp CCCCCCCCCC-----------------------------------------C
T ss_pred CcccCcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 45567788899999988862 1222322 33444555555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=117.94 Aligned_cols=109 Identities=17% Similarity=0.038 Sum_probs=84.5
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|++|++++|.+. .+|..+..+++|++|++++|......+..+..+++|++|++++|.+....|..|.++++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46777777776554 56677888888888888888655555556778888888888888887777777888888888888
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+....+..+..+++|+.|++++|+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888665656778888888888888743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=140.16 Aligned_cols=101 Identities=23% Similarity=0.207 Sum_probs=82.4
Q ss_pred ceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCC
Q 002156 90 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNT 169 (959)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 169 (959)
.|++|+|++|.++.+|. |+.+++|++|+|++|+|+.+|..++.+++|++|+|++| .+..+| .|+.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48888888888888876 88888888888888888888888888888888888884 566677 7888888888888888
Q ss_pred Cccccc--ccccccccCCceeceEEec
Q 002156 170 DSLEEM--PLGIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 170 ~~~~~~--p~~i~~L~~L~~L~~~~~~ 194 (959)
. ++.+ |..++.|++|++|++..+.
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 7 6766 7778888888888765554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=115.44 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCeEEEEeecccccccccccccccCC-cccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCcccccc-ccc
Q 002156 33 SENLRHLSYIPEYCDGVKRFEDLYDIQ-HLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDS-IGD 110 (959)
Q Consensus 33 ~~~~r~ls~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~ 110 (959)
+.+++++.+.++.+..+ +.+..+. +|+.|.+.++. ...+ +.+..+++|++|++++|.++.+|.. +..
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 45789999988776543 4455555 99999998865 3444 6789999999999999999999754 599
Q ss_pred cCcccEEeccCCCCcccch--hhhccccccEEeccCcchhhhhhHh----hhcccccceeecCCCCcccc
Q 002156 111 LRYLRYLNLSGTHIRALPE--SVNKLYNLHTLLLEDCRELKKLCAD----MGNLIKLHHHNNSNTDSLEE 174 (959)
Q Consensus 111 l~~L~~L~L~~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~ 174 (959)
+++|++|+|++|+|..+|. .++.+++|++|++++| .+..+|.. ++.+++|++||+++|. ..+
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~-~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK-LKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC-HHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC-HHH
Confidence 9999999999999999987 8999999999999995 67777775 8999999999999987 443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.6e-11 Score=113.13 Aligned_cols=110 Identities=15% Similarity=-0.042 Sum_probs=79.8
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57777777777766555556677888888888887544333334567788888888888877666666778888888888
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|.+.+..+..+..+++|++|++++|+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 888887555545677888888888888643
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-11 Score=113.47 Aligned_cols=115 Identities=15% Similarity=-0.026 Sum_probs=97.4
Q ss_pred CCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 698 PPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 698 p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999988766666789999999999999988776677789999999999999965544444567899999999
Q ss_pred ecCCcCcCccccccCCCCccceeeeccCCCCCCCc
Q 002156 778 IYGCERLEALPKGLHNLTSLQELRIGRGVELPSLE 812 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 812 (959)
+++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999886666667889999999999999886554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-12 Score=126.42 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=65.4
Q ss_pred ccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhc
Q 002156 54 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNK 133 (959)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~ 133 (959)
.+..+++|+.|.+.++. ...+| .+.++++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n~-------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE-------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC-------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34556666666665543 23344 556666666666666666666666666666666666666666665 4666
Q ss_pred cccccEEeccCcchhhhhhH--hhhcccccceeecCCCC
Q 002156 134 LYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~ 170 (959)
+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 666666666663 4444443 46666666666666665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=123.64 Aligned_cols=291 Identities=13% Similarity=0.040 Sum_probs=170.8
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--C
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--E 574 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~ 574 (959)
.++++++|.+++. + ....+ ..+...+++|+.|+|++|.+.. ....-+.++.++.+.+..+ .+| .
T Consensus 23 ~~~~l~~L~l~g~--i---~~~~~----~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK--L---NAEDF----RHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE--E---CHHHH----HHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecc--c---cHHHH----HHHHHhhccCeEEecCcceeEE-ecCcccccccccccccccc----ccCHHH
Confidence 4567899998862 2 11111 1122224889999999998762 1111123334555555555 334 3
Q ss_pred CcC--------CCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEEeecCCCcccccc
Q 002156 575 VAL--------PSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTV 646 (959)
Q Consensus 575 ~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 646 (959)
+.. +++|+.+++.+ . ++.++...+ ..+++|+++++.++. +..++...+. +|.++..++.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF-~~~~~L~~l~l~~n~-i~~i~~~aF~---------~~~~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAF-KGCDNLKICQIRKKT-APNLLPEALA---------DSVTAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-T-CCEECTTTT-TTCTTCCEEEBCCSS-CCEECTTSSC---------TTTCEEEECT
T ss_pred hcccccccccccCCCcEEECCc-c-ccchhHHHh-hcCcccceEEcCCCC-ccccchhhhc---------CCCceEEecC
Confidence 455 88999999988 3 555655444 789999999998843 3344443332 2444444443
Q ss_pred cccccccCCCcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCc-eEeeccChhhH-HHHHhhcCCCC
Q 002156 647 EEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLK-SLGVFECSKLE-SIAERLDNNTS 724 (959)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~-~L~l~~~~~~~-~~~~~~~~l~~ 724 (959)
...... .....+......+|. .|+ .+.+....... .+...-....+
T Consensus 156 ~~~~~~-------~~~~~i~~~~f~~~~-------------------------~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 156 GSSDAY-------RFKNRWEHFAFIEGE-------------------------PLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TCTHHH-------HTSTTTTTSCEEESC-------------------------CCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cchhhh-------hcccccccccccccc-------------------------ccceeEEecCCCcHHHHHhhcccCccc
Confidence 211000 000011111112222 222 33333332222 22222334567
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCccc-eeee
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQ-ELRI 802 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l 802 (959)
++.+.+.+.-...........+++|+++++++|. ++.+|. .|..|++|+++++.+| +....+..|.++++|+ .+++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 7777776542211111111248999999999985 455554 6888999999999998 4444567889999999 9999
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEE
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLE 853 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 853 (959)
.+ .+...-+.+|..+++|+.+++++|...... ...|.++++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 88 666555678999999999999888533222 25678888888875
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-11 Score=112.25 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=69.9
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccchh-hhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPES-VNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
...+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|..
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 455665554 6777888888887776 55777888888888888888777654 477888888888774 56666655
Q ss_pred hhcccccceeecCCCCcccccccccc
Q 002156 155 MGNLIKLHHHNNSNTDSLEEMPLGIG 180 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~~~~~~p~~i~ 180 (959)
|+.+++|++|++++|. +...+.++.
T Consensus 101 ~~~l~~L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp TTTCTTCSEEECCSSC-BCTTBGGGH
T ss_pred hccccCCCEEEeCCCC-cccccccHH
Confidence 7777888888888777 555544443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-12 Score=126.34 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=97.8
Q ss_pred cccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhc
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGN 157 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 157 (959)
...+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.|+.+|..+..+++|++|++++| .+..+| .++.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence 3445557899999999999999999998 899999999999999999999998999999999999995 677787 7999
Q ss_pred ccccceeecCCCCccccccc--ccccccCCceeceEE
Q 002156 158 LIKLHHHNNSNTDSLEEMPL--GIGKLTCLQTLCNFV 192 (959)
Q Consensus 158 L~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~ 192 (959)
+++|++|++++|. +..+|. .++.+++|++|++..
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 9999999999998 887765 588999999986533
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=107.22 Aligned_cols=90 Identities=27% Similarity=0.319 Sum_probs=55.4
Q ss_pred cccccccCCCCCceeEEEecCCCCccc-cccccccCcccEEeccCCCCcccchh-hhccccccEEeccCcchhhhhhHh-
Q 002156 78 AYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTHIRALPES-VNKLYNLHTLLLEDCRELKKLCAD- 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 154 (959)
...+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +..+++|++|+|++| .+..+|..
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGA 97 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHH
Confidence 344454442 5666666666666666 45566666666666666666666543 466666666666663 45555443
Q ss_pred hhcccccceeecCCCC
Q 002156 155 MGNLIKLHHHNNSNTD 170 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~ 170 (959)
|+.+++|++|++++|.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 6666666666666665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=103.01 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=79.0
Q ss_pred ccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeecc
Q 002156 725 LEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGR 804 (959)
Q Consensus 725 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 804 (959)
.+.++++++.+. .+|..+ .++|++|++++|......|..+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777665543 456555 47888888888865555566777888888888888887766666778888888888888
Q ss_pred CCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 805 GVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 805 n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|.+.+..+..+..+++|++|++++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888666666888888888888888643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=102.64 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=75.0
Q ss_pred cEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccC
Q 002156 726 EIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRG 805 (959)
Q Consensus 726 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 805 (959)
+.++++++.+ +.+|..+ .++|++|++++|...+..|..+..+++|++|++++|++.+..+..|.++++|+.|++++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566656544 5566655 378888888888655555667777888888888888776655556678888888888888
Q ss_pred CCCCCCcccCCCCCCcceEEccCCchh
Q 002156 806 VELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 806 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
.+.+..+..+..+++|+.|++++|+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888555555778888888888888643
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=111.27 Aligned_cols=110 Identities=12% Similarity=-0.015 Sum_probs=79.9
Q ss_pred HhhcCCCCccEEeecccCCC-----cccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccc
Q 002156 717 ERLDNNTSLEIISIGSCGNL-----KILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKG 790 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 790 (959)
.+|.+|++|+.+++.++... ..-+..|..|++|+.+++..+ +..++ ..|.+|++|+.+.+..+ +...-+.+
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 46778888888888776543 234667888999999999843 55554 46777899999999665 34444567
Q ss_pred cCCCCccceeeeccCCCCCCCcccCCCC-CCcceEEccCCc
Q 002156 791 LHNLTSLQELRIGRGVELPSLEEEDGLP-TNLQSLDIWGNI 830 (959)
Q Consensus 791 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~ 830 (959)
|.++ +|+.+++.+|......+..+..+ .+++.|.+-.+.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 8888 99999999887776555566666 478888887764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-08 Score=106.27 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=101.5
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++|+.+.+..+ ....-...|.++++|+++++..+ +..++.....-.+|+.+.+.++ +...-...|.++++|+.++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEE
Confidence 355566665432 22223445666666666666653 3444433222256666666432 3333345666667777777
Q ss_pred eccCCCC-----CCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEeec
Q 002156 802 IGRGVEL-----PSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEIS 876 (959)
Q Consensus 802 l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~ 876 (959)
+.++... ..-+..|..+++|+.+++.++ +... ....|.++++|+.+.+..
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I---~~~aF~~c~~L~~l~lp~-------------------- 332 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL---GQGLLGGNRKVTQLTIPA-------------------- 332 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE---CTTTTTTCCSCCEEEECT--------------------
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE---hhhhhcCCCCccEEEECc--------------------
Confidence 7665443 223345666666777666633 1111 113455556666665533
Q ss_pred cCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCC---CCccccceeeccCChhHHHHHhhcCCCccccc
Q 002156 877 FFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKK---GLPSSLLRLWIEGCPLIEEKCRKDGGQYWDLL 943 (959)
Q Consensus 877 ~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i 943 (959)
+++.|+. .|..+ +|+++++.++ .+..++.. +++.+++.|++-... .+.+... ..|...
T Consensus 333 ---~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 333 ---NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDF 394 (401)
T ss_dssp ---TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGG
T ss_pred ---cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhh
Confidence 4666665 67777 9999999885 45555554 345688889887643 2334433 346544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-09 Score=112.04 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=44.3
Q ss_pred ccccccCCCCCceeEEEecC-CCCcccc-ccccccCcccEEeccCCCCcccc-hhhhccccccEEeccCcchhhhhhHhh
Q 002156 79 YSILPKLFKLQRLRAFSLRG-YHIFELP-DSIGDLRYLRYLNLSGTHIRALP-ESVNKLYNLHTLLLEDCRELKKLCADM 155 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (959)
..+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|+|+.+| ..|++|++|++|+|++| .+..+|..+
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHH
Confidence 34444 55555555555553 5555553 34555555555555555555443 33455555555555552 344444432
Q ss_pred hcccccceeecCCCC
Q 002156 156 GNLIKLHHHNNSNTD 170 (959)
Q Consensus 156 ~~L~~L~~L~l~~~~ 170 (959)
.....|++|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 222225555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=103.18 Aligned_cols=128 Identities=18% Similarity=0.097 Sum_probs=67.3
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.+..+..|+.+.+..+ ........+..+..++.+...... .....+..+.+|+.+.+.++ +...-..+|.++++|
T Consensus 248 ~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 4556666666666543 223334455666666666654431 11224556667777776554 222224456667777
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+.+++..+ +...-..+|.++.+|+.+++..+ +... ...+|.++++|+.+++..
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I---~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKI---GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEE---CTTTBTTCTTCCEEEEEG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEe---hHHHhhCCCCCCEEEECC
Confidence 77777543 33233445666677777766544 1111 113455566666666543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.7e-10 Score=120.65 Aligned_cols=133 Identities=15% Similarity=0.034 Sum_probs=69.4
Q ss_pred CCCceEeeccChhhHHHHHhh----c-CCCCccEEeecccCCCcccCc-cccCCCCcceeeccccccccccCCC----C-
Q 002156 699 PSLKSLGVFECSKLESIAERL----D-NNTSLEIISIGSCGNLKILPS-GLHNLCQLQEIEIWNCGNLVSFPEG----G- 767 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~----~- 767 (959)
+.|++|++++|.+.......+ . ..++|++|++++|.+...... ....+++|++|++++|......... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 467777777777655433332 2 225777777777765432211 1223556677777776432211111 1
Q ss_pred CCCCCccEEEecCCcCcCc----cccccCCCCccceeeeccCCCCCC----CcccCCCCCCcceEEccCCch
Q 002156 768 LPCAKLMRLEIYGCERLEA----LPKGLHNLTSLQELRIGRGVELPS----LEEEDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 768 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~ 831 (959)
...++|++|++++|.+... ++..+...++|++|++++|.+... ++..+...++|++|++++|..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 1345666666666665331 233334556666666666655421 223344445566666666643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.2e-07 Score=97.91 Aligned_cols=190 Identities=15% Similarity=0.065 Sum_probs=95.2
Q ss_pred hhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 718 RLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 718 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
.|.++++|+.+++..+ ....-...+..+..|+.+.+..+ ...+......+.+|+.+.+.... ...-...+.++..|
T Consensus 180 ~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCc-eecccccccccccc
Confidence 3455555555555432 21222334555555665555443 22233333444556666554332 11222344555666
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCC--cccccCCCCCceEee
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDD--MVSFPLPASLTSLEI 875 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~L~~L~l 875 (959)
+.+.+..+... .....+..+..++.+....... ....+..+.+|+.+.+.+.-.. ...|.-+.+|+.+++
T Consensus 256 ~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i-------~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV-------PEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp CEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-------CTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECC
T ss_pred eeEEcCCCcce-eeccccccccccceeccCceee-------ccccccccccccccccccccceechhhhcCCCCCCEEEe
Confidence 66666544222 2233455555565555544321 1133455566666666442110 112234456666666
Q ss_pred ccCCCCccccc-ccCCCCCCcEEecCCCcCCCCCCCCCC--ccccceeecc
Q 002156 876 SFFPNLERLSS-SIVDLQILTELRLYHCRKLKYFPKKGL--PSSLLRLWIE 923 (959)
Q Consensus 876 ~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 923 (959)
.. .++.|+. .|..+++|+++++..+ ++.+....| ..+|+++++.
T Consensus 328 p~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 328 PY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred CC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 43 3666655 6777788888887653 667766555 4567777664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-09 Score=118.33 Aligned_cols=137 Identities=13% Similarity=-0.005 Sum_probs=86.7
Q ss_pred CCCccEEeecccCCCcccCcc----cc-CCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCcccccc----
Q 002156 722 NTSLEIISIGSCGNLKILPSG----LH-NLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGL---- 791 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~----~~-~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 791 (959)
++.|+.|++++|.+....... +. ..++|++|+|++|....... .....+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999998876533222 22 23689999999986533211 122235678999999998754433333
Q ss_pred -CCCCccceeeeccCCCCC----CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 792 -HNLTSLQELRIGRGVELP----SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 792 -~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
...++|++|++++|.+.. .++..+...++|++|+|++|.............+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 346788888888887753 2333445678888888888875443332222344555677777777643
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-08 Score=105.33 Aligned_cols=103 Identities=20% Similarity=0.140 Sum_probs=44.0
Q ss_pred EeeccChhhHHHHHhhcCCCCccEEeecc-cCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCc
Q 002156 704 LGVFECSKLESIAERLDNNTSLEIISIGS-CGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCE 782 (959)
Q Consensus 704 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 782 (959)
++.++++.+..+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|...+..|..+..+++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444322233444 44444555555543 33333333444445555555555443333333334444444444444444
Q ss_pred CcCccccccCCCCccceeeeccCCCC
Q 002156 783 RLEALPKGLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 783 ~~~~~~~~~~~l~~L~~L~l~~n~~~ 808 (959)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4433333333332 444444444443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-07 Score=101.87 Aligned_cols=163 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHhhcCCCCccEEeecccCC---------CcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcC
Q 002156 715 IAERLDNNTSLEIISIGSCGN---------LKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLE 785 (959)
Q Consensus 715 ~~~~~~~l~~L~~L~l~~~~~---------~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 785 (959)
+..+...+++|+.|.+.+... .+.++..+..+|+|++|+|++|... .++. + .+++|++|++..|.+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 344455677888888855322 1123344566788888888877333 2333 2 36788888888776544
Q ss_pred cccccc--CCCCccceeeeccC--CCCCC-----CcccC--CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEE
Q 002156 786 ALPKGL--HNLTSLQELRIGRG--VELPS-----LEEED--GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEI 854 (959)
Q Consensus 786 ~~~~~~--~~l~~L~~L~l~~n--~~~~~-----~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 854 (959)
.....+ ..+|+|+.|+|+.+ ...+. +...+ ..+++|+.|++++|............ ..
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~---------- 276 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SD---------- 276 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CS----------
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-Cc----------
Confidence 332333 26788888887532 11111 11111 23566666666666533221110000 01
Q ss_pred cccCCCcccccCCCCCceEeeccCCCCcc-----cccccCCCCCCcEEecCCCc
Q 002156 855 RGCDDDMVSFPLPASLTSLEISFFPNLER-----LSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 855 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 903 (959)
..++|+.|+++. +.++. ++.++..+++|++|++++|.
T Consensus 277 -----------~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 -----------ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -----------SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -----------cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 234555555554 34554 44455667888888888763
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-05 Score=87.06 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+|.+|.+|+.+.+.+. ....-...+.++++|+.+.+.. .+..++. .|.+|.+|+.+.+..+ +...-..+|.++.
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 36788899999988653 3333356678899999999964 3555554 6778899999999765 3333356788999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+|+.+.+..+ +...-..+|.+|++|+.+++.++.... ..+....+|+.+.+..
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence 9999999654 444455678899999999999885321 2345566777776654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=93.71 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=37.2
Q ss_pred cccccCCCCcceeeeccCCCcccCCCCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEec
Q 002156 549 PQSSLSLSSLREIVIYKCSSLVSFPEVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISS 614 (959)
Q Consensus 549 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 614 (959)
...+..+|+|+.|.|++|..+ .++.+ ..++|++|++..|.........+....+|+|++|+|+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 334556777888888776333 23333 36778888887776433322222213577777777754
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.9e-05 Score=82.51 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred HhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEecCCcCcCccccccCCCC
Q 002156 717 ERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEIYGCERLEALPKGLHNLT 795 (959)
Q Consensus 717 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 795 (959)
.+|.++++|+.+.+.. .....-...|.++.+|++++|..+ ++.+. ..|.+|.+|+.+.+..+ ....-..+|.+++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 3577888888888853 333333556788999999999754 45554 46778999999999765 3333456788999
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCC
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGN 829 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 829 (959)
+|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 358 ~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 9999999887433 135667788888887655
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-06 Score=78.21 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=52.9
Q ss_pred CccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCcccccCCCCCceEe
Q 002156 795 TSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLE 874 (959)
Q Consensus 795 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 874 (959)
..|+.||+++|.++..--..+..+++|+.|+|++|..+++.... .+..++ ...++|++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~-----------------~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLE-----------------NLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCH-----------------HHHHHCCEEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcc-----------------cccCCCCEEE
Confidence 36777777777655433334556666666666666555443321 011100 0013566677
Q ss_pred eccCCCCccccc-ccCCCCCCcEEecCCCcCCCCC
Q 002156 875 ISFFPNLERLSS-SIVDLQILTELRLYHCRKLKYF 908 (959)
Q Consensus 875 l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 908 (959)
+++|+.+++-.- .+..+++|++|++++|+.++..
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 777777765221 4566788888888888777653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-06 Score=78.25 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=55.1
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCC--CCcC----CCCCCeEEEecCCCCcccChhhhcCCCC
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFP--EVAL----PSKLKKINIWHCDALKSLPEAWMCDTNS 605 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 605 (959)
.+|+.|++++|.+...--..+..+++|++|+|++|..++... .+.. .++|++|++++|..+++-..... ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 356777777776544333345678888888888887665421 2222 24678888888776655433333 4567
Q ss_pred CccEEEEecCCCCcc
Q 002156 606 SLEILTISSCHSLTY 620 (959)
Q Consensus 606 ~L~~L~l~~c~~l~~ 620 (959)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777776654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0006 Score=74.07 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred hcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCC-CCCCCCCccEEEecCCcCcCccccccCCCCcc
Q 002156 719 LDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPE-GGLPCAKLMRLEIYGCERLEALPKGLHNLTSL 797 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 797 (959)
+.++..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++. .+..|++|+.+.+.++.+...-...|.++++|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 444555555555332 11111333444555555555432 222222 34445555555555444333333445555555
Q ss_pred ceeeeccCCCCCCCcccCCCCCCcceEEc
Q 002156 798 QELRIGRGVELPSLEEEDGLPTNLQSLDI 826 (959)
Q Consensus 798 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 826 (959)
+.+.+..+ +...-..+|.++++|+.+.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555432 22122223444444544444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-05 Score=80.58 Aligned_cols=103 Identities=20% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCCCceeE--EEecCCCCccccc----cccccCcccEEeccCCCCccc---chhhhccccccEEeccCcchhhhhhHhhh
Q 002156 86 FKLQRLRA--FSLRGYHIFELPD----SIGDLRYLRYLNLSGTHIRAL---PESVNKLYNLHTLLLEDCRELKKLCADMG 156 (959)
Q Consensus 86 ~~l~~Lr~--L~L~~~~i~~lp~----~~~~l~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (959)
...+.|+. ++++.|....++. ...++++|+.|+|++|+|..+ |..++.+++|++|+|++| .+..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhh
Confidence 33344444 4555554333322 224566677777777766654 345566777777777763 44444 2344
Q ss_pred ccc--ccceeecCCCCccccccc-------ccccccCCceece
Q 002156 157 NLI--KLHHHNNSNTDSLEEMPL-------GIGKLTCLQTLCN 190 (959)
Q Consensus 157 ~L~--~L~~L~l~~~~~~~~~p~-------~i~~L~~L~~L~~ 190 (959)
.++ +|++|++++|.....+|. -+..+++|+.|+.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 444 677777777763333331 1556667777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0004 Score=75.50 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=72.9
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccC-CCCCCCCCccEEEe
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFP-EGGLPCAKLMRLEI 778 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l 778 (959)
.|+.+.+..+ ....-...|.++.+|+.+.+... ....-...+..+++|+.+.+.++. ++.++ ..|.+|.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence 5555555432 11122346778889999988542 333334567889999999998763 44444 46788999999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP 818 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 818 (959)
..+ +...-..+|.++++|+.+.+..+ +...-..+|.++
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 764 23333567889999999988654 332223345444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-05 Score=76.51 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=66.6
Q ss_pred cccCCcccEEecccc-CCCCCCcccccccccCCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCcc--
Q 002156 55 LYDIQHLRTFLPVTL-SNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIRA-- 126 (959)
Q Consensus 55 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-- 126 (959)
+...+.|+.|.+.++ .-.. .....+...+...+.|++|+|++|.|+. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 445667777777654 3100 0012233444566777777777777653 33455556677777777777763
Q ss_pred ---cchhhhccccccEEec--cCcchhh----hhhHhhhcccccceeecCCCC
Q 002156 127 ---LPESVNKLYNLHTLLL--EDCRELK----KLCADMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 127 ---lp~~i~~L~~L~~L~L--~~~~~~~----~lp~~i~~L~~L~~L~l~~~~ 170 (959)
+...+...+.|++|+| ++|..-. .+...+...+.|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3455666667777777 5543221 133445555677777777776
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=76.25 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred ccCCCCCceeEEEecCC-CCcc-----ccccccccCcccEEeccCCCCcc-----cchhhhccccccEEeccCcchhh--
Q 002156 83 PKLFKLQRLRAFSLRGY-HIFE-----LPDSIGDLRYLRYLNLSGTHIRA-----LPESVNKLYNLHTLLLEDCRELK-- 149 (959)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~-- 149 (959)
..+...+.|++|+|++| .++. +...+...++|++|+|++|.|.. +...+...+.|++|+|++|..-.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34478899999999999 8754 45567788999999999999873 45566777899999999964322
Q ss_pred --hhhHhhhcccccceeec--CCCCccccc-----ccccccccCCceeceEEe
Q 002156 150 --KLCADMGNLIKLHHHNN--SNTDSLEEM-----PLGIGKLTCLQTLCNFVV 193 (959)
Q Consensus 150 --~lp~~i~~L~~L~~L~l--~~~~~~~~~-----p~~i~~L~~L~~L~~~~~ 193 (959)
.+...+...+.|++|++ ++|. ++.- ...+...++|++|++..+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 25666788889999999 7787 5442 233555678888866433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=80.79 Aligned_cols=81 Identities=12% Similarity=-0.004 Sum_probs=46.7
Q ss_pred hcCCCCccEEeecccCCCc--ccCccccCCCCcceeeccccccccccCCCCCCCC--CccEEEecCCcCcCcccc-----
Q 002156 719 LDNNTSLEIISIGSCGNLK--ILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCA--KLMRLEIYGCERLEALPK----- 789 (959)
Q Consensus 719 ~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~----- 789 (959)
..++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.... +. .+..+. +|++|++++|++.+.+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3567888888888887766 445556677777777777774332 21 122222 566666666665543331
Q ss_pred --ccCCCCccceee
Q 002156 790 --GLHNLTSLQELR 801 (959)
Q Consensus 790 --~~~~l~~L~~L~ 801 (959)
.+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 234455555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0086 Score=52.85 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=38.1
Q ss_pred EEEecCCCCc--cccccccccCcccEEeccCCCCcccch-hhhccccccEEeccCc
Q 002156 93 AFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTHIRALPE-SVNKLYNLHTLLLEDC 145 (959)
Q Consensus 93 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~ 145 (959)
+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6777888877 7776554 367888888888888864 4577888888888775
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.027 Score=53.29 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=31.0
Q ss_pred cCCCCcceeeccccccccc-----cCCCCCCCCCccEEEecCCcCcCcccc----ccCCCCccceeeeccCCCC
Q 002156 744 HNLCQLQEIEIWNCGNLVS-----FPEGGLPCAKLMRLEIYGCERLEALPK----GLHNLTSLQELRIGRGVEL 808 (959)
Q Consensus 744 ~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~~~ 808 (959)
.+-+.|++|+|++|..++. +.+.+..-+.|+.|+|++|.+.+.-.. .+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456677777776422221 222233334666666666665432211 1222345555555555544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.037 Score=52.29 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCcc-----cchhhhccccccEEeccC
Q 002156 85 LFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIRA-----LPESVNKLYNLHTLLLED 144 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~ 144 (959)
+..=+.|+.|+|++|.|.. +...+..=+.|+.|+|++|.|.. +-+.+..=+.|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3444555566666555542 22334444555666666555541 223333333455555553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.078 Score=46.63 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=16.7
Q ss_pred ccceeeeccCCCCCCCcccCCCCCCcceEEccCCc
Q 002156 796 SLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNI 830 (959)
Q Consensus 796 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 830 (959)
+|+.|+|++|.+...-+..+..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34455555555443333334444555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 959 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.004 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 19/239 (7%)
Query: 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCG 758
+L +L + + LE + + LK LP + Q +
Sbjct: 55 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEIT 113
Query: 759 NLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLP 818
+ GL ++ L + + L +RI + ++ + GLP
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQ--GLP 170
Query: 819 TNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEISFF 878
+L L + GN G ++L +L + V A+ L
Sbjct: 171 PSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226
Query: 879 PN--LERLSSSIVDLQILTELRLYHCRKLKYFPK--------KGLPSSLLRLWIEGCPL 927
N L ++ + D + + + L++ + +S + + P+
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.004
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 82 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLL 141
+ R R LRGY I + + L ++ S IR L L L TLL
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLL 69
Query: 142 LEDC 145
+ +
Sbjct: 70 VNNN 73
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.004
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 111 LRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTD 170
L LN+S + LP L L+ L ++ NL +LH N
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYN---- 334
Query: 171 SLEEMPLGIGKLTCLQ 186
L E P + L+
Sbjct: 335 PLREFPDIPESVEDLR 350
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.004
Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 18/235 (7%)
Query: 651 QCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECS 710
+C S + + ++ + + L L L++L +
Sbjct: 29 RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC------SKLQNLSLEGLR 82
Query: 711 KLESIAERLDNNTSLEIISIGSCGNLKILPS-----GLHNLCQLQEIEIWNCGNLVSFPE 765
+ I L N++L +++ C L +L ++
Sbjct: 83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142
Query: 766 GGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED----GLPTNL 821
+ +L + G + + L + L+ + L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202
Query: 822 QSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFPLPASLTSLEIS 876
Q L + +I + +L+ L++ G D L +L L+I+
Sbjct: 203 QHLSLSRCYDIIPETLL---ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN 254
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.82 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.81 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.78 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.74 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.73 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.68 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.66 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.66 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.65 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.64 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.48 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.39 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.38 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.37 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.37 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.35 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.35 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.31 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.27 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.24 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.21 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.19 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.19 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.1 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.03 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.92 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.91 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.87 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.84 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.89 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.84 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.79 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.71 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.66 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.82 E-value=1.1e-20 Score=199.51 Aligned_cols=228 Identities=13% Similarity=0.087 Sum_probs=165.0
Q ss_pred cccceEEEec-CCCCCCccccccCCCCcceeeeccCCCcccCCC-CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 532 CRLEYLTLSG-CQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE-VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 532 ~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
++|++|++++ |.+.+.+|..++++++|++|++++|......+. +..+++|+.+++++|.....+|..+ ..++.++.
T Consensus 76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l--~~l~~L~~ 153 (313)
T d1ogqa_ 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCE
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh--ccCcccce
Confidence 5666666665 455567777788888888888888765544442 5557778888888877777776665 57777777
Q ss_pred EEEecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhh
Q 002156 610 LTISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATL 689 (959)
Q Consensus 610 L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 689 (959)
+++++|.....++. .
T Consensus 154 l~l~~n~l~~~ip~----------------------------------------------------------------~- 168 (313)
T d1ogqa_ 154 ITFDGNRISGAIPD----------------------------------------------------------------S- 168 (313)
T ss_dssp EECCSSCCEEECCG----------------------------------------------------------------G-
T ss_pred eecccccccccccc----------------------------------------------------------------c-
Confidence 77776432211111 0
Q ss_pred hccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCC
Q 002156 690 ESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 690 ~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
++.++..++.+++++|...+..|..+..+..+ .++++.+...+.+|..+..+++|+++++++|.....+| .+..
T Consensus 169 ----~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~ 242 (313)
T d1ogqa_ 169 ----YGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242 (313)
T ss_dssp ----GGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC
T ss_pred ----cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-cccc
Confidence 01111234666666666666666666666544 68888888888888888899999999999887655554 5677
Q ss_pred CCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhh
Q 002156 770 CAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIW 833 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 833 (959)
+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+| .++.+++|+.+++++|+.+.
T Consensus 243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEE
T ss_pred ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCcccc
Confidence 7899999999999988899999999999999999999998888 46788899999999997554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.81 E-value=1.6e-18 Score=189.20 Aligned_cols=189 Identities=18% Similarity=0.097 Sum_probs=91.3
Q ss_pred cCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccce
Q 002156 720 DNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQE 799 (959)
Q Consensus 720 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 799 (959)
..+++++.+++++|...+..| +...++|++|++++|. ++.++ .+..+++|+.|++++|.+.+.. .++.+++|++
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~ 267 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCccCCCC--cccccccCCE
Confidence 344455555554444333322 2334455555555552 22222 2334455555555555543322 1444555555
Q ss_pred eeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccc-ccCCCCCceEeeccC
Q 002156 800 LRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS-FPLPASLTSLEISFF 878 (959)
Q Consensus 800 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~ 878 (959)
|++++|.+.+.. .+..++.++.+++++|..... ..+..+++++.|+++++...... +..+++|++|++++|
T Consensus 268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n 339 (384)
T d2omza2 268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339 (384)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred eeccCcccCCCC--ccccccccccccccccccccc------cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCC
Confidence 555555544222 134445555555555532110 11334455555555554333222 234455666666664
Q ss_pred CCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCC
Q 002156 879 PNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGC 925 (959)
Q Consensus 879 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 925 (959)
.++.++ .+..+++|++|++++| .++.++.-+-.++|+.|+++++
T Consensus 340 -~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 340 -KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp -CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred -CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence 566665 4666777777777664 4555543222456777766653
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=1e-17 Score=182.81 Aligned_cols=340 Identities=18% Similarity=0.155 Sum_probs=193.0
Q ss_pred cCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCCCc
Q 002156 497 DISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPEVA 576 (959)
Q Consensus 497 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~ 576 (959)
.+.+|++|+++++ .++.+.. . ..+++|++|++++|++.+ ++ .++++++|++|++++|+. ..++.+.
T Consensus 42 ~l~~l~~L~l~~~-~I~~l~g------l----~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i-~~i~~l~ 107 (384)
T d2omza2 42 DLDQVTTLQADRL-GIKSIDG------V----EYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQI-ADITPLA 107 (384)
T ss_dssp HHTTCCEEECCSS-CCCCCTT------G----GGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CCCGGGT
T ss_pred HhCCCCEEECCCC-CCCCccc------c----ccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccc-ccccccc
Confidence 4456677777664 4444311 0 123788888888887654 34 377888888888888854 4555677
Q ss_pred CCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecCCCCccccCCCCCCCccEEE-eecCCCcccccccccccccCC
Q 002156 577 LPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSCHSLTYFGGVQLPRSLKQLD-ILSCDNIRTLTVEEGIQCSSS 655 (959)
Q Consensus 577 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~-l~~c~~L~~l~~~~~~~~~~~ 655 (959)
.+++|+.|+++++......+. .....+.......+. +................ ......+..+..
T Consensus 108 ~l~~L~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 173 (384)
T d2omza2 108 NLTNLTGLTLFNNQITDIDPL----KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLAN--------- 173 (384)
T ss_dssp TCTTCCEEECCSSCCCCCGGG----TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTT---------
T ss_pred ccccccccccccccccccccc----ccccccccccccccc-ccccccccccccccccccccccchhhhhcc---------
Confidence 788888888888775443322 234455555554421 11111101111111110 001111111100
Q ss_pred CcccccccccceEeeccccccccccccCCcchhhhccccCCCCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCC
Q 002156 656 SSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLESLEVGNLPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGN 735 (959)
Q Consensus 656 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 735 (959)
...........+... .... ...+ +.++.+++++|...+..| +..+++|++|++++|.+
T Consensus 174 ------~~~~~~~~~~~~~~~--------~~~~-----~~~l-~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l 231 (384)
T d2omza2 174 ------LTTLERLDISSNKVS--------DISV-----LAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 231 (384)
T ss_dssp ------CTTCCEEECCSSCCC--------CCGG-----GGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ------ccccccccccccccc--------cccc-----cccc-cccceeeccCCccCCCCc--ccccCCCCEEECCCCCC
Confidence 000111111110000 0000 1111 466777777766554332 45567777777777755
Q ss_pred CcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccC
Q 002156 736 LKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEED 815 (959)
Q Consensus 736 ~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 815 (959)
.. + +.+..+++|++|++++|... .++ .+..+++|++|++++|++.+.. .+..++.++.+++++|.+.+ ++ .+
T Consensus 232 ~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~-~~ 303 (384)
T d2omza2 232 KD-I-GTLASLTNLTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-IS-PI 303 (384)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CG-GG
T ss_pred CC-c-chhhcccccchhccccCccC-CCC-cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-cc-cc
Confidence 43 2 24667777888888777543 333 2556677888888777765433 35667777777877777664 22 35
Q ss_pred CCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccc-ccCCCCCceEeeccCCCCcccccccCCCCCC
Q 002156 816 GLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS-FPLPASLTSLEISFFPNLERLSSSIVDLQIL 894 (959)
Q Consensus 816 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 894 (959)
..+++++.|++++|..... ..+..+++|++|++++|...... +.-+++|+.|++++| .++.++ .+..+++|
T Consensus 304 ~~~~~l~~L~ls~n~l~~l------~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N-~l~~l~-~l~~l~~L 375 (384)
T d2omza2 304 SNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN-QISDLT-PLANLTRI 375 (384)
T ss_dssp GGCTTCSEEECCSSCCSCC------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCBCG-GGTTCTTC
T ss_pred chhcccCeEECCCCCCCCC------cccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCC-cCCCCh-hhccCCCC
Confidence 6677778888877753221 12456777888888776543332 345678888888875 788887 48999999
Q ss_pred cEEecCCC
Q 002156 895 TELRLYHC 902 (959)
Q Consensus 895 ~~L~l~~c 902 (959)
++|+|++|
T Consensus 376 ~~L~L~~N 383 (384)
T d2omza2 376 TQLGLNDQ 383 (384)
T ss_dssp SEEECCCE
T ss_pred CEeeCCCC
Confidence 99999986
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.78 E-value=2.1e-19 Score=189.62 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=175.3
Q ss_pred CCCceEeecc-ChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEE
Q 002156 699 PSLKSLGVFE-CSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLE 777 (959)
Q Consensus 699 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (959)
+.|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..+++|+++++++|.....+|..+..+++|++++
T Consensus 76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~ 155 (313)
T d1ogqa_ 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence 5888888876 566667888888888888888888888888888888888888888888888778888888888888888
Q ss_pred ecCCcCcCccccccCCCCcc-ceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 778 IYGCERLEALPKGLHNLTSL-QELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 778 l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
+++|.+.+.+|..+..+..+ +.+++++|.+.+..|..+..+..+ .++++++....... ..+..+++++.+++++
T Consensus 156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~----~~~~~~~~l~~l~~~~ 230 (313)
T d1ogqa_ 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG----GGCCTTSCCSEEECCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc----cccccccccccccccc
Confidence 88888888888888777776 788888888887777777665544 68888776443332 3456778888888887
Q ss_pred cCCCccc--ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeeccCChhH
Q 002156 857 CDDDMVS--FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIEGCPLI 928 (959)
Q Consensus 857 ~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 928 (959)
+...... ...+++|+.|++++|...+.+|..+.++++|++|++++|..-..+|..+-.++|+.+++.+++.+
T Consensus 231 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence 6443222 23567899999999654448999999999999999999765557887555678888989888754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.74 E-value=5.8e-17 Score=169.98 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCcceeeeccCCCcccCC--CCcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEEEecC
Q 002156 556 SSLREIVIYKCSSLVSFP--EVALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILTISSC 615 (959)
Q Consensus 556 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 615 (959)
+++++|++++| .++.+| .+..+++|++|++++|......+..+ ..+++|++|++++|
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f--~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYLSKN 89 (305)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSS
T ss_pred CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhh--hCCCccCEecccCC
Confidence 45666666665 233333 24445566666666665544434333 45666666666664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=8.9e-17 Score=168.50 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=61.6
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++|+.|++++|...+..+..+..++.+++|++++|......+..+..+++|++|++++|++. .+|.++..+++|++|+
T Consensus 170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248 (305)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence 445555555555555555555666666666666666444434444555666666666666543 3455566666666666
Q ss_pred eccCCCCCCCcc------cCCCCCCcceEEccCCch
Q 002156 802 IGRGVELPSLEE------EDGLPTNLQSLDIWGNIE 831 (959)
Q Consensus 802 l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~~ 831 (959)
+++|++...-.. .....++|+.|++++|+.
T Consensus 249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 666665532111 223456677777777763
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.3e-16 Score=163.02 Aligned_cols=178 Identities=17% Similarity=0.058 Sum_probs=125.5
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRL 776 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (959)
+|+.+++|+|++|.+.+..+..|.++++|++|++++|.+. .+|. ++.+++|++|++++|+ +..++..+..+++|+.|
T Consensus 29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L 105 (266)
T d1p9ag_ 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVL 105 (266)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEE
T ss_pred cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccc-ccccccccccccccccc
Confidence 4457888888888776655567788888888888887654 3432 4677888888888874 45566677777888888
Q ss_pred EecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 777 EIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 777 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.+++++|....... ..+..+++|++|++++
T Consensus 106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~ 181 (266)
T d1p9ag_ 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQE 181 (266)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc----cccccccccceeeccc
Confidence 888887776666677777888888888887776656566677778888887775322111 2344455555555554
Q ss_pred cCCCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCCCc
Q 002156 857 CDDDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYHCR 903 (959)
Q Consensus 857 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 903 (959)
+.++.+|.++..+++|+.|++++|+
T Consensus 182 ----------------------N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 182 ----------------------NSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp ----------------------SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ----------------------CCCcccChhHCCCCCCCEEEecCCC
Confidence 5688888888888888888888875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.2e-16 Score=161.14 Aligned_cols=133 Identities=14% Similarity=0.028 Sum_probs=102.4
Q ss_pred CCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEec
Q 002156 700 SLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIY 779 (959)
Q Consensus 700 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (959)
+|++|++++|......+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|......+..+..+++|++++++
T Consensus 106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~ 185 (284)
T d1ozna_ 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (284)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence 55666666555544444556677778888888877766666777888888889888886544445667788889999999
Q ss_pred CCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 780 GCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 780 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
+|++.+..|..|+.+++|++|++++|.+.+..+..++.+++|++|++++|+..
T Consensus 186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 88888877888888889999999999888777778888888999999888743
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.3e-16 Score=161.06 Aligned_cols=202 Identities=22% Similarity=0.193 Sum_probs=153.0
Q ss_pred CCCCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeecccccccccc-CCCCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSF-PEGGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 775 (959)
+|+.+++|+|++|.+.+..+..|.++++|++|++++|.+....+..+..++.++.+++..+..++.+ +..+.++++|++
T Consensus 30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~ 109 (284)
T d1ozna_ 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (284)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence 4568899999999887665667999999999999998888877888888999999988777667666 456788899999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEc
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIR 855 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 855 (959)
|++++|......+..+...++|+.+++++|.+.+..+..+..+++|+.|++++|...... ...+.++++|+.++++
T Consensus 110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~----~~~f~~l~~L~~l~l~ 185 (284)
T d1ozna_ 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLH 185 (284)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECC
T ss_pred EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc----hhhhccccccchhhhh
Confidence 999999887766777888899999999999998766777888899999999999643221 2456778888888888
Q ss_pred ccCCCccc---ccCCCCCceEeeccCCCCcccc-cccCCCCCCcEEecCCCc
Q 002156 856 GCDDDMVS---FPLPASLTSLEISFFPNLERLS-SSIVDLQILTELRLYHCR 903 (959)
Q Consensus 856 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 903 (959)
++...... +..+++|+.|++++| .+..++ ..+..+++|++|++++|+
T Consensus 186 ~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 186 QNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence 75443322 224456677777764 344443 356667777777777654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.65 E-value=7.1e-15 Score=157.79 Aligned_cols=85 Identities=27% Similarity=0.362 Sum_probs=39.9
Q ss_pred eeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc-cccceeecCCC
Q 002156 91 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL-IKLHHHNNSNT 169 (959)
Q Consensus 91 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L-~~L~~L~l~~~ 169 (959)
+++|||++++++.+|+. .++|++|+|++|+|+++|+.+ .+|+.|++++| .+..++ .+ +.|++|++++|
T Consensus 40 l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n-~l~~l~----~lp~~L~~L~L~~n 108 (353)
T d1jl5a_ 40 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNN-NLKALS----DLPPLLEYLGVSNN 108 (353)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSCCC----SCCTTCCEEECCSS
T ss_pred CCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhc-ccchhh----hhcccccccccccc
Confidence 44555555555555542 234555555555555555432 24444455542 233322 11 23555555555
Q ss_pred CcccccccccccccCCcee
Q 002156 170 DSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 170 ~~~~~~p~~i~~L~~L~~L 188 (959)
. +..+|. ++++++|++|
T Consensus 109 ~-l~~lp~-~~~l~~L~~L 125 (353)
T d1jl5a_ 109 Q-LEKLPE-LQNSSFLKII 125 (353)
T ss_dssp C-CSSCCC-CTTCTTCCEE
T ss_pred c-cccccc-hhhhccceee
Confidence 4 455542 3445555554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-15 Score=155.38 Aligned_cols=132 Identities=17% Similarity=0.066 Sum_probs=105.8
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
++|++|++++|.+.. .+..+..+++|++|++++|...+..+..+..+.++++|++++|......+..+..+++|+.+++
T Consensus 77 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (266)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence 355666666554432 2445677888888888888887777778888999999999998655444455667899999999
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
++|++.+..+..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|+..
T Consensus 156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 999988877888899999999999999988 78888888999999999999744
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.58 E-value=3.1e-14 Score=152.73 Aligned_cols=291 Identities=17% Similarity=0.089 Sum_probs=161.7
Q ss_pred CcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhcccccc
Q 002156 59 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLH 138 (959)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~ 138 (959)
.+++.|.+.++. ..++|+ -.++|++|++++|+|+.+|+.+ .+|+.|++++|+++.+++-. ..|+
T Consensus 38 ~~l~~LdLs~~~-------L~~lp~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp---~~L~ 101 (353)
T d1jl5a_ 38 RQAHELELNNLG-------LSSLPE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP---PLLE 101 (353)
T ss_dssp HTCSEEECTTSC-------CSCCCS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC---TTCC
T ss_pred cCCCEEEeCCCC-------CCCCCC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc---cccc
Confidence 468888887654 456664 3468899999999999998765 47889999999888775421 4699
Q ss_pred EEeccCcchhhhhhHhhhcccccceeecCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeecc
Q 002156 139 TLLLEDCRELKKLCADMGNLIKLHHHNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISK 218 (959)
Q Consensus 139 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~ 218 (959)
+|++++| .+..+| .++.+++|++|+++++. +...|..+..+..+.... ........
T Consensus 102 ~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~---~~~~~~~~------------------ 157 (353)
T d1jl5a_ 102 YLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGN---NQLEELPE------------------ 157 (353)
T ss_dssp EEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS---SCCSSCCC------------------
T ss_pred ccccccc-cccccc-chhhhccceeecccccc-ccccccccccccchhhcc---cccccccc------------------
Confidence 9999985 678888 47889999999999988 777665554444332211 11111111
Q ss_pred ccccccchhhHHhccCCCCCCceEEEEeccCCCCCCchh-------hhhHhhhccCCCCCCCcceEEEeccCCCCCCccc
Q 002156 219 LENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSRE-------AETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWL 291 (959)
Q Consensus 219 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 291 (959)
+..+..++.+.+.++.......... .............++.++.++++++....+|.+
T Consensus 158 --------------l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~- 222 (353)
T d1jl5a_ 158 --------------LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL- 222 (353)
T ss_dssp --------------CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC-
T ss_pred --------------ccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 2222333333333332211100000 000001122334455566666665555444432
Q ss_pred cCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeEecCCCCceEeCccccCCCCCCCCCcccceeccccccccccccccC
Q 002156 292 GDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHLTVRGMSRVKRLGSEFYGNDPPIPFPCLETLLFENMREWEDWISHGS 371 (959)
Q Consensus 292 ~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 371 (959)
..++..+.+.++.+...... .+.+....+..+.... +.. .........+... .
T Consensus 223 ----~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~-l~~---------l~~~~~~~~~~~~----------~ 275 (353)
T d1jl5a_ 223 ----PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSE---------LPPNLYYLNASSN----------E 275 (353)
T ss_dssp ----CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESC---------CCTTCCEEECCSS----------C
T ss_pred ----cccccccccccccccccccc---cccccccccccccccc-ccc---------ccchhcccccccC----------c
Confidence 34455555555544322111 2223333332221100 000 0001111111111 1
Q ss_pred CCCccccccccceeccccCccccCCCCCCCCCccEEEEeccCCcccccCCCCCccEEEecCCC
Q 002156 372 SQGVVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELSVSVSRLPALCKLQIGGCK 434 (959)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 434 (959)
+......+++|++|++++| .++ .+|..+++|+.|++++|.. ......+++|++|++++|+
T Consensus 276 ~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~L~~L~L~~N~L-~~l~~~~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 276 IRSLCDLPPSLEELNVSNN-KLI-ELPALPPRLERLIASFNHL-AEVPELPQNLKQLHVEYNP 335 (353)
T ss_dssp CSEECCCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC
T ss_pred cccccccCCCCCEEECCCC-ccC-ccccccCCCCEEECCCCcC-CccccccCCCCEEECcCCc
Confidence 2223345788999999985 677 8888899999999988853 2222345689999999887
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=3.2e-14 Score=138.75 Aligned_cols=167 Identities=20% Similarity=0.290 Sum_probs=113.0
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.++.+|+.|++++|.++.++ .+..+++|++|+|++|+|+.++ .++.+++|++|++++| .+..+| .+..+++|+.|+
T Consensus 43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-cccccc-cccccccccccc
Confidence 35678888899998888875 4888899999999999988886 4788899999999885 677776 588888999999
Q ss_pred cCCCCcccccccccccccCCceeceEEeccCCCCChhhhhhhhhcccceeeccccccccchhhHHhccCCCCCCceEEEE
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 245 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (959)
+++|. ...++ .+..+++++.++. +
T Consensus 119 l~~~~-~~~~~-~l~~l~~l~~l~~------------------------------------------------------~ 142 (210)
T d1h6ta2 119 LEHNG-ISDIN-GLVHLPQLESLYL------------------------------------------------------G 142 (210)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEEC------------------------------------------------------C
T ss_pred ccccc-ccccc-ccccccccccccc------------------------------------------------------c
Confidence 98887 55443 3555555555432 1
Q ss_pred eccCCCCCCchhhhhHhhhccCCCCCCCcceEEEeccCCCCCCccccCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 002156 246 WTRSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYEGMKFPTWLGDSSFSNLVTLKFKNCGMCTALPSMGQLPSLKHL 325 (959)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 325 (959)
++...+ ......+++|+.++++++....++. + ..+++|++|++++|.+. .++.+.++++|++|
T Consensus 143 ~n~l~~-------------~~~~~~l~~L~~l~l~~n~l~~i~~-l--~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L 205 (210)
T d1h6ta2 143 NNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-L--AGLTKLQNLYLSKNHIS-DLRALAGLKNLDVL 205 (210)
T ss_dssp SSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-G--TTCTTCCEEECCSSCCC-BCGGGTTCTTCSEE
T ss_pred cccccc-------------ccccccccccccccccccccccccc-c--cCCCCCCEEECCCCCCC-CChhhcCCCCCCEE
Confidence 111100 0111223455666666665555543 2 23777888888877664 45667777888888
Q ss_pred EecC
Q 002156 326 TVRG 329 (959)
Q Consensus 326 ~L~~ 329 (959)
++++
T Consensus 206 ~Ls~ 209 (210)
T d1h6ta2 206 ELFS 209 (210)
T ss_dssp EEEE
T ss_pred EccC
Confidence 7764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.48 E-value=5.8e-14 Score=135.67 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=66.2
Q ss_pred CCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceee
Q 002156 86 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHN 165 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (959)
.++.++++|+++++.++.++ .++.+++|++|++++|+|+.++. ++++++|++|++++| .+..+| .++++++|+.|+
T Consensus 37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLT 112 (199)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-cccccc-cccccccccccc
Confidence 45677778888888877773 47778888888888888777753 777888888888774 455555 477777788888
Q ss_pred cCCCCcccccccccccccCCcee
Q 002156 166 NSNTDSLEEMPLGIGKLTCLQTL 188 (959)
Q Consensus 166 l~~~~~~~~~p~~i~~L~~L~~L 188 (959)
+++|. ...++ .+..+++|+.|
T Consensus 113 l~~~~-~~~~~-~~~~l~~L~~L 133 (199)
T d2omxa2 113 LFNNQ-ITDID-PLKNLTNLNRL 133 (199)
T ss_dssp CCSSC-CCCCG-GGTTCTTCSEE
T ss_pred ccccc-ccccc-ccchhhhhHHh
Confidence 77776 33332 24444444444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=2.7e-13 Score=134.31 Aligned_cols=185 Identities=17% Similarity=0.131 Sum_probs=94.1
Q ss_pred CCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 722 NTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 722 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+.+|+.|++.+|.+.. + .++..+++|++|++++|.... ++ .+..+++|+++++++|.... + ..++.+++|+.++
T Consensus 40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD 113 (227)
T ss_dssp HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeec-cc-cccccccccccccccccccc-c-ccccccccccccc
Confidence 3445555555544332 2 234555555555555553222 21 14445555555555554332 2 2344555555555
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCc-ccccCCCCCceEeeccCCC
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDM-VSFPLPASLTSLEISFFPN 880 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~L~~L~l~~~~~ 880 (959)
+++|...+.. .+...+.++.+.++++..... ..+...++|++|++++|.... ..+.-+++|+.|++++| .
T Consensus 114 l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n-~ 184 (227)
T d1h6ua2 114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-K 184 (227)
T ss_dssp CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-C
T ss_pred cccccccccc--hhccccchhhhhchhhhhchh------hhhccccccccccccccccccchhhcccccceecccCCC-c
Confidence 5555444221 233445555555555432111 113344555555555543221 12234456666666664 6
Q ss_pred CcccccccCCCCCCcEEecCCCcCCCCCCCCCCccccceeecc
Q 002156 881 LERLSSSIVDLQILTELRLYHCRKLKYFPKKGLPSSLLRLWIE 923 (959)
Q Consensus 881 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 923 (959)
+++++ .+..+++|++|++++| +++.++.-+-.++|+.|+++
T Consensus 185 l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 185 ISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred cCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence 77776 4677788888888876 57777653335677777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.1e-14 Score=147.48 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=112.1
Q ss_pred cCCCCcceeeccccccccc-cCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeeeccCCCCCC--CcccCCCCCC
Q 002156 744 HNLCQLQEIEIWNCGNLVS-FPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRIGRGVELPS--LEEEDGLPTN 820 (959)
Q Consensus 744 ~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~ 820 (959)
....+|++|++++|..... ++..+..|++|++|++++|.+.+..+..++.+++|++|++++|...+. +......+++
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence 3456778888887754332 333456677888888888876666666677778888888887654321 1222345678
Q ss_pred cceEEccCCchhhhhhhhhccCC-CCCCCccEEEEcccCCCcccc------cCCCCCceEeeccCCCCcc-cccccCCCC
Q 002156 821 LQSLDIWGNIEIWKSMIERGRGF-HGFSSLRRLEIRGCDDDMVSF------PLPASLTSLEISFFPNLER-LSSSIVDLQ 892 (959)
Q Consensus 821 L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~-l~~~~~~l~ 892 (959)
|++|++++|..+++.... ..+ ...++|+.|++++|....... ...++|++|++++|+.+++ ....+.+++
T Consensus 123 L~~L~ls~c~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~ 200 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200 (284)
T ss_dssp CCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred ccccccccccccccccch--hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence 888888887655433221 111 224678888887764322211 1356788888888777763 334677788
Q ss_pred CCcEEecCCCcCCCCCCCCCC--ccccceeeccCC
Q 002156 893 ILTELRLYHCRKLKYFPKKGL--PSSLLRLWIEGC 925 (959)
Q Consensus 893 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 925 (959)
+|++|++++|+.++.-....+ .++|+.|++.+|
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 888888888876654322212 467888888877
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=6.5e-13 Score=131.53 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=134.2
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
.+|++|++.+|.+.. + ..+..+++|++|++++|.+.+..| +..+++|+++++++|.. +.++ .+..+++|+.+++
T Consensus 41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l 114 (227)
T d1h6ua2 41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDL 114 (227)
T ss_dssp HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc-cccc-ccccccccccccc
Confidence 467888888776553 3 347788888888888887665433 77888888888888743 4454 3567788888888
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|...+.. .+...+.++.+.++++.+....+ +..+++|+.|++++|..... ..+.++++|++|++++|.
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~Ls~n~ 184 (227)
T d1h6ua2 115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLKADDNK 184 (227)
T ss_dssp TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred ccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccccccc------hhhcccccceecccCCCc
Confidence 888765432 35567788888888887764433 56678888888888864221 235678888888888875
Q ss_pred CCccc-ccCCCCCceEeeccCCCCcccccccCCCCCCcEEecCC
Q 002156 859 DDMVS-FPLPASLTSLEISFFPNLERLSSSIVDLQILTELRLYH 901 (959)
Q Consensus 859 ~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 901 (959)
..... +..+++|++|++++| .++.++ .+.++++|+.|++++
T Consensus 185 l~~l~~l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 185 ISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred cCCChhhcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence 43332 335678999999996 789998 588999999999974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=6.9e-13 Score=127.95 Aligned_cols=160 Identities=20% Similarity=0.197 Sum_probs=88.8
Q ss_pred CCCceEeeccChhhHHHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEe
Q 002156 699 PSLKSLGVFECSKLESIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEI 778 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (959)
+++++|++++|.+.. + ..+..+++|++|++++|.+.+. +. ++.+++|++|++++|.. ..++ .+..++.|+.|++
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccc-cccc-ccccccccccccc
Confidence 355666666655432 1 2355566666666666654432 22 56666666666666633 2333 2445566666666
Q ss_pred cCCcCcCccccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccC
Q 002156 779 YGCERLEALPKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCD 858 (959)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (959)
++|..... ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|..... ..+.++
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l------~~l~~l------------ 171 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL------KPLANL------------ 171 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC------GGGTTC------------
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC------ccccCC------------
Confidence 66654432 23555666666666666554 233 355566666666666642110 112333
Q ss_pred CCcccccCCCCCceEeeccCCCCcccccccCCCCCCcEE
Q 002156 859 DDMVSFPLPASLTSLEISFFPNLERLSSSIVDLQILTEL 897 (959)
Q Consensus 859 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 897 (959)
++|+.|++++| .+++++ .+..+++|++|
T Consensus 172 ---------~~L~~L~ls~N-~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 172 ---------TTLERLDISSN-KVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp ---------TTCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred ---------CCCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence 45555555554 688887 57788888876
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.39 E-value=5.8e-13 Score=129.70 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceeee
Q 002156 723 TSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELRI 802 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 802 (959)
.+|++|++++|.+.. ++ ++..+++|++|++++|. ++.++ .+..+++|++|++++|++.+ +| .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcc-ccCcc-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence 345555555544332 21 24555666666666553 23333 23445566666666655432 32 3555566666666
Q ss_pred ccCCCCCCCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccc-ccCCCCCceEeeccCCCC
Q 002156 803 GRGVELPSLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVS-FPLPASLTSLEISFFPNL 881 (959)
Q Consensus 803 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~l 881 (959)
++|.+. .++ .+..+++++.+++++|..... ..+..+++|+.++++++...... +.-+++|++|++++| .+
T Consensus 120 ~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N-~i 190 (210)
T d1h6ta2 120 EHNGIS-DIN-GLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HI 190 (210)
T ss_dssp TTSCCC-CCG-GGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CC
T ss_pred cccccc-ccc-ccccccccccccccccccccc------ccccccccccccccccccccccccccCCCCCCEEECCCC-CC
Confidence 666554 222 344555666666666542111 11233455555555543221111 112334444444443 45
Q ss_pred cccccccCCCCCCcEEecC
Q 002156 882 ERLSSSIVDLQILTELRLY 900 (959)
Q Consensus 882 ~~l~~~~~~l~~L~~L~l~ 900 (959)
+.+| .+..+++|++|+|+
T Consensus 191 ~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 191 SDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CBCG-GGTTCTTCSEEEEE
T ss_pred CCCh-hhcCCCCCCEEEcc
Confidence 5555 45566666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.4e-12 Score=129.09 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=50.3
Q ss_pred cccceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccE
Q 002156 532 CRLEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEI 609 (959)
Q Consensus 532 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 609 (959)
+++++|++++|.+...-+..|.++++|++|++++|.....++. +..++.++++.+..+..+..++...+ ..+++|++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~ 107 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQY 107 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTCCE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-cccccccc
Confidence 5677777777766433334567777777777777766554442 34466677777666554444443322 55666777
Q ss_pred EEEecC
Q 002156 610 LTISSC 615 (959)
Q Consensus 610 L~l~~c 615 (959)
++++++
T Consensus 108 l~l~~~ 113 (242)
T d1xwdc1 108 LLISNT 113 (242)
T ss_dssp EEEESC
T ss_pred cccchh
Confidence 777664
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9e-14 Score=142.60 Aligned_cols=156 Identities=13% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCCceEeeccChhhH-HHHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccc--cCCCCCCCCCccE
Q 002156 699 PSLKSLGVFECSKLE-SIAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVS--FPEGGLPCAKLMR 775 (959)
Q Consensus 699 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~ 775 (959)
.+|++|++++|.... .+...+..+++|++|++++|...+..+..+..+++|++|++++|..++. +......+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 366777777766544 3445566777777777777765555555566677777777777655432 1111234566777
Q ss_pred EEecCCcCcCc--ccccc-CCCCccceeeeccCCC--CC-CCcccCCCCCCcceEEccCCchhhhhhhhhccCCCCCCCc
Q 002156 776 LEIYGCERLEA--LPKGL-HNLTSLQELRIGRGVE--LP-SLEEEDGLPTNLQSLDIWGNIEIWKSMIERGRGFHGFSSL 849 (959)
Q Consensus 776 L~l~~~~~~~~--~~~~~-~~l~~L~~L~l~~n~~--~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 849 (959)
|++++|..... +...+ ...++|+.|+++++.. .. .+......+++|++|++++|..+++... ..+..+++|
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L 202 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYL 202 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTC
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcccCcC
Confidence 77766644321 11112 2235666666665421 11 1121223455666666666654433221 223344455
Q ss_pred cEEEEccc
Q 002156 850 RRLEIRGC 857 (959)
Q Consensus 850 ~~L~l~~~ 857 (959)
++|++++|
T Consensus 203 ~~L~L~~C 210 (284)
T d2astb2 203 QHLSLSRC 210 (284)
T ss_dssp CEEECTTC
T ss_pred CEEECCCC
Confidence 55554443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=5.6e-13 Score=116.49 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=60.1
Q ss_pred cCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhh--Hhhhccccc
Q 002156 84 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLC--ADMGNLIKL 161 (959)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L 161 (959)
.+.++++|++|++++|.++.+|+.++.+++|++|++++|+|+.+| .++.+++|++|++++| .+..+| ..++.+++|
T Consensus 15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-ccCCCCCchhhcCCCCC
Confidence 466677777777777777777666777777777777777777764 4677777777777763 455444 246667777
Q ss_pred ceeecCCCCcccccc
Q 002156 162 HHHNNSNTDSLEEMP 176 (959)
Q Consensus 162 ~~L~l~~~~~~~~~p 176 (959)
++|++++|. +...+
T Consensus 93 ~~L~l~~N~-i~~~~ 106 (124)
T d1dcea3 93 VLLNLQGNS-LCQEE 106 (124)
T ss_dssp CEEECTTSG-GGGSS
T ss_pred CEEECCCCc-CCcCc
Confidence 777777776 54443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7e-13 Score=122.24 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=105.5
Q ss_pred cccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchh-h
Q 002156 53 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPES-V 131 (959)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-i 131 (959)
+.+.+..++|.|.+.++. ...++..+..+++|++|+|++|.|+.++ .|..+++|++|++++|+|+.+|.. +
T Consensus 12 ~~~~n~~~lr~L~L~~n~-------I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~ 83 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYK-------IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLD 83 (162)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred HhccCcCcCcEEECCCCC-------CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccc
Confidence 456677789999988876 5666554578899999999999999884 588999999999999999998765 4
Q ss_pred hccccccEEeccCcchhhhhhH--hhhcccccceeecCCCCccccccc----ccccccCCceeceEEe
Q 002156 132 NKLYNLHTLLLEDCRELKKLCA--DMGNLIKLHHHNNSNTDSLEEMPL----GIGKLTCLQTLCNFVV 193 (959)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~ 193 (959)
..+++|++|++++| .+..++. .+..+++|++|++++|. +...|. .++.+++|+.|+...+
T Consensus 84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~i 149 (162)
T d1a9na_ 84 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 149 (162)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCCC
Confidence 68999999999995 5666653 57889999999999998 777774 3778888888875443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=9.9e-13 Score=114.86 Aligned_cols=96 Identities=24% Similarity=0.247 Sum_probs=86.2
Q ss_pred eEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcccccceeecCCCCc
Q 002156 92 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNLIKLHHHNNSNTDS 171 (959)
Q Consensus 92 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 171 (959)
|+|+|++|+++.++ .+.++++|++|++++|+|+++|+.++.+++|++|++++ +.+..+| +++.+++|++|++++|+
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~- 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNR- 76 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCCCc-
Confidence 78999999999986 48999999999999999999999999999999999999 5788887 59999999999999998
Q ss_pred cccccc--ccccccCCceeceE
Q 002156 172 LEEMPL--GIGKLTCLQTLCNF 191 (959)
Q Consensus 172 ~~~~p~--~i~~L~~L~~L~~~ 191 (959)
+..+|. .++.+++|++|++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~ 98 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQ 98 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECT
T ss_pred cCCCCCchhhcCCCCCCEEECC
Confidence 888773 47888889888653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.4e-11 Score=123.22 Aligned_cols=220 Identities=13% Similarity=0.077 Sum_probs=110.7
Q ss_pred cceEEEecCCCCCCccccccCCCCcceeeeccCCCcccCCC--CcCCCCCCeEEEecCCCCcccChhhhcCCCCCccEEE
Q 002156 534 LEYLTLSGCQGLVKLPQSSLSLSSLREIVIYKCSSLVSFPE--VALPSKLKKINIWHCDALKSLPEAWMCDTNSSLEILT 611 (959)
Q Consensus 534 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 611 (959)
.+.++.++..+ ..+|..+ .+++++|++++|. ++.+|. +..+++|++|++++|.....++...+ ..++.++++.
T Consensus 10 ~~~i~c~~~~l-~~iP~~l--~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f-~~l~~l~~l~ 84 (242)
T d1xwdc1 10 NRVFLCQESKV-TEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIR 84 (242)
T ss_dssp SSEEEEESCSC-SSCCSCS--CSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE-ESCTTCCEEE
T ss_pred CCEEEEeCCCC-CCcCCCC--CCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccc-cccccccccc
Confidence 45666666554 3566543 2467778887774 444543 45577777777777776655544322 4566666666
Q ss_pred EecCCCCccccCCCCCCCccEEEeecCCCcccccccccccccCCCcccccccccceEeeccccccccccccCCcchhhhc
Q 002156 612 ISSCHSLTYFGGVQLPRSLKQLDILSCDNIRTLTVEEGIQCSSSSSRRYTSSLLEHLHIESCLSLTCIFSKNELPATLES 691 (959)
Q Consensus 612 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 691 (959)
+..++.+..++...+ ..++
T Consensus 85 ~~~~n~l~~~~~~~~---------------------------------~~l~---------------------------- 103 (242)
T d1xwdc1 85 IEKANNLLYINPEAF---------------------------------QNLP---------------------------- 103 (242)
T ss_dssp EECCTTCCEECTTSE---------------------------------ECCT----------------------------
T ss_pred ccccccccccccccc---------------------------------cccc----------------------------
Confidence 666554443332110 1112
Q ss_pred cccCCCCCCCceEeeccChhhHHHH-HhhcCCCCccEEeecccCCCcccCccccCCC-CcceeeccccccccccCCCCCC
Q 002156 692 LEVGNLPPSLKSLGVFECSKLESIA-ERLDNNTSLEIISIGSCGNLKILPSGLHNLC-QLQEIEIWNCGNLVSFPEGGLP 769 (959)
Q Consensus 692 ~~~~~lp~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~ 769 (959)
+|+++++++|.+....+ ..+..++.+..+...++......+..+..++ .++.|++++|. ++.++.....
T Consensus 104 --------~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~ 174 (242)
T d1xwdc1 104 --------NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFN 174 (242)
T ss_dssp --------TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTT
T ss_pred --------cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-cccccccccc
Confidence 23333333322211000 0112233333333333333333334444443 66677777663 3445555555
Q ss_pred CCCccEEEecCCcCcCcc-ccccCCCCccceeeeccCCCCCCCcccCCCCCCcceEEccC
Q 002156 770 CAKLMRLEIYGCERLEAL-PKGLHNLTSLQELRIGRGVELPSLEEEDGLPTNLQSLDIWG 828 (959)
Q Consensus 770 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 828 (959)
.++++++...++..++.+ +..|.++++|++|++++|.+...-+..+..+++|+.+++.+
T Consensus 175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 556665554333333344 34467777777777777777633333455555555555543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.4e-12 Score=120.12 Aligned_cols=109 Identities=24% Similarity=0.282 Sum_probs=93.3
Q ss_pred ccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHh-hhccccc
Q 002156 83 PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCAD-MGNLIKL 161 (959)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L 161 (959)
+.|.+..++|.|+|++|+|+.+|..+..+.+|++|+|++|+|++++ .+..+++|++|++++| .+..+|.. +..+++|
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 89 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccccc
Confidence 4466788999999999999999887789999999999999999994 6899999999999995 67777765 5789999
Q ss_pred ceeecCCCCccccccc--ccccccCCceeceEEec
Q 002156 162 HHHNNSNTDSLEEMPL--GIGKLTCLQTLCNFVVG 194 (959)
Q Consensus 162 ~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~ 194 (959)
++|++++|. +..++. .+..+++|++|++..+.
T Consensus 90 ~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 90 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ccceecccc-ccccccccccccccccchhhcCCCc
Confidence 999999998 888764 47888889888664443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.24 E-value=6e-12 Score=120.42 Aligned_cols=110 Identities=14% Similarity=-0.028 Sum_probs=83.0
Q ss_pred CCccEEeecccCCCccc-CccccCCCCcceeeccccccccccCCCCCCCCCccEEEecCCcCcCccccccCCCCccceee
Q 002156 723 TSLEIISIGSCGNLKIL-PSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMRLEIYGCERLEALPKGLHNLTSLQELR 801 (959)
Q Consensus 723 ~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 801 (959)
+++++|+|++|.+.+.+ +..|..+++|++|++++|......+..+..+++|++|++++|++....|..|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 46677777777775533 55567788888888888876666666777778888888888887766677788888888888
Q ss_pred eccCCCCCCCcccCCCCCCcceEEccCCchh
Q 002156 802 IGRGVELPSLEEEDGLPTNLQSLDIWGNIEI 832 (959)
Q Consensus 802 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 832 (959)
|++|.+.+..+..|..+++|++|++++|+..
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccccccCHHHhcCCcccccccccccccc
Confidence 8888888766767778888888888888643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.1e-13 Score=147.18 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=72.9
Q ss_pred ceEEEeccCcccccccccCcccccCCCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCC----Ccc
Q 002156 474 EELEIIDMKEQTYIWKSHNGLLQDISSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLV----KLP 549 (959)
Q Consensus 474 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~ 549 (959)
.+|+.+|++.++++.......+..++++++|++++| .++..........+ ...++|++|++++|.+.. .+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L----~~~~~L~~LdLs~N~i~~~~~~~l~ 76 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSAL----RVNPALAELNLRSNELGDVGVHCVL 76 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHH----HTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHH----hcCCCCCEEECcCCcCChHHHHHHH
Confidence 368888998888865555566778889999999988 35532222222211 234789999998887642 122
Q ss_pred cccc-CCCCcceeeeccCCCccc----CC-CCcCCCCCCeEEEecCCCC
Q 002156 550 QSSL-SLSSLREIVIYKCSSLVS----FP-EVALPSKLKKINIWHCDAL 592 (959)
Q Consensus 550 ~~l~-~l~~L~~L~L~~~~~l~~----~~-~~~~~~~L~~L~l~~~~~~ 592 (959)
..+. ..++|++|++++|..... ++ .+...++|++|++++|...
T Consensus 77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 2222 235789999988854221 11 2456788889998888753
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=1.3e-11 Score=118.11 Aligned_cols=115 Identities=14% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCCCCceEeeccChhhHH-HHHhhcCCCCccEEeecccCCCcccCccccCCCCcceeeccccccccccCCCCCCCCCccE
Q 002156 697 LPPSLKSLGVFECSKLES-IAERLDNNTSLEIISIGSCGNLKILPSGLHNLCQLQEIEIWNCGNLVSFPEGGLPCAKLMR 775 (959)
Q Consensus 697 lp~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (959)
+|+.+++|+|++|.+.+. .+..|..+++|++|++++|.+....+..+..+++|++|++++|......+..|.++++|++
T Consensus 27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~ 106 (192)
T d1w8aa_ 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence 457899999999998764 4567899999999999999999988999999999999999999655555567889999999
Q ss_pred EEecCCcCcCccccccCCCCccceeeeccCCCCCCC
Q 002156 776 LEIYGCERLEALPKGLHNLTSLQELRIGRGVELPSL 811 (959)
Q Consensus 776 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 811 (959)
|+|++|++.+..+..|..+++|++|++++|++....
T Consensus 107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cccCCccccccCHHHhcCCccccccccccccccccc
Confidence 999999998888889999999999999999887443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=5.1e-13 Score=148.84 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCccEEEEccCCCcccchhhhHHHHHhhhhhcccccceEEEecCCCCC----CccccccCCCCcceeeeccCCCcc----
Q 002156 499 SSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLV----KLPQSSLSLSSLREIVIYKCSSLV---- 570 (959)
Q Consensus 499 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~---- 570 (959)
++|++|+++. ++++..... ...+. .+++++|+|++|.+.. .+...+..+++|++|++++|....
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~---~l~~~----l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~ 73 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWA---ELLPL----LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHH---HHHHH----HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred CCCCEEEeeC-CcCChHHHH---HHHHh----CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence 3688999954 777653322 22222 3899999999998753 344567789999999999985421
Q ss_pred cCC-CCc-CCCCCCeEEEecCCCCcc----cChhhhcCCCCCccEEEEecCC
Q 002156 571 SFP-EVA-LPSKLKKINIWHCDALKS----LPEAWMCDTNSSLEILTISSCH 616 (959)
Q Consensus 571 ~~~-~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~c~ 616 (959)
.+. .+. ...+|++|++++|..... ++..+ ..+++|++|++++|.
T Consensus 74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l--~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL--RTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT--TSCTTCCEEECCSSB
T ss_pred HHHHHHhcCCCCCCEEECCCCCccccccccccchh--hcccccccccccccc
Confidence 111 111 235799999999985433 22222 678999999999864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.10 E-value=2.7e-12 Score=122.86 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=63.0
Q ss_pred ccccCCcccEEeccccCCCCCCcccccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhc
Q 002156 54 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNK 133 (959)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~ 133 (959)
++..+++|+.|.+.++. ...+ +.+..+++|++|++++|.|+.+|..+..+.+|++|++++|+|+.++ .+..
T Consensus 43 sl~~L~~L~~L~Ls~n~-------I~~i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~ 113 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNN-------IEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCCEEECSEEE-------ESCC-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred HHhcccccceeECcccC-------CCCc-ccccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence 34556666666665543 2333 3455666666666666666666554455556666666666666653 4666
Q ss_pred cccccEEeccCcchhhhhh--HhhhcccccceeecCCCC
Q 002156 134 LYNLHTLLLEDCRELKKLC--ADMGNLIKLHHHNNSNTD 170 (959)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~ 170 (959)
+++|++|++++| .+..++ ..++.+++|++|++++|.
T Consensus 114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 666666666663 444443 235666666666666665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.03 E-value=2.5e-12 Score=123.03 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=95.1
Q ss_pred ccccccCCCCCceeEEEecCCCCccccccccccCcccEEeccCCCCcccchhhhccccccEEeccCcchhhhhhHhhhcc
Q 002156 79 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTHIRALPESVNKLYNLHTLLLEDCRELKKLCADMGNL 158 (959)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (959)
..++.++..+++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.+|..+..+.+|++|++++| .+..++ .+..+
T Consensus 38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l 114 (198)
T d1m9la_ 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHH
T ss_pred hhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccccc-ccccc
Confidence 344566789999999999999999995 599999999999999999999877778889999999995 677765 58999
Q ss_pred cccceeecCCCCccccccc--ccccccCCceeceEEe
Q 002156 159 IKLHHHNNSNTDSLEEMPL--GIGKLTCLQTLCNFVV 193 (959)
Q Consensus 159 ~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~ 193 (959)
++|++|++++|. ++.++. .++.+++|++|++..+
T Consensus 115 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSS
T ss_pred ccccccccccch-hccccccccccCCCccceeecCCC
Confidence 999999999998 887763 4888999999876443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=9.1e-10 Score=100.19 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=65.3
Q ss_pred cccccccCCCCCceeEEEecCC-CCcccc-ccccccCcccEEeccCCCCccc-chhhhccccccEEeccCcchhhhhhHh
Q 002156 78 AYSILPKLFKLQRLRAFSLRGY-HIFELP-DSIGDLRYLRYLNLSGTHIRAL-PESVNKLYNLHTLLLEDCRELKKLCAD 154 (959)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~ 154 (959)
..+.|..+..+++|+.|+++++ .++.++ .+|.++++|+.|+|++|+|+.+ |.+|..+++|++|+|++ +.+..+|.+
T Consensus 20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~ 98 (156)
T d2ifga3 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK 98 (156)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChh
Confidence 4556666777777788887655 377774 4677788888888888887777 45577778888888877 456677766
Q ss_pred hhcccccceeecCCCC
Q 002156 155 MGNLIKLHHHNNSNTD 170 (959)
Q Consensus 155 i~~L~~L~~L~l~~~~ 170 (959)
+....+|++|++++|.
T Consensus 99 ~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 99 TVQGLSLQELVLSGNP 114 (156)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred hhccccccccccCCCc
Confidence 4444567777777776
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.91 E-value=1.9e-10 Score=121.67 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=115.7
Q ss_pred CCCceEeeccChh----------hHHHHHhhcCCCCccEEeecccCCCcc----cCccccCCCCcceeeccccccccc--
Q 002156 699 PSLKSLGVFECSK----------LESIAERLDNNTSLEIISIGSCGNLKI----LPSGLHNLCQLQEIEIWNCGNLVS-- 762 (959)
Q Consensus 699 ~~L~~L~l~~~~~----------~~~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~l~~-- 762 (959)
++|+.++++++.. ...+...+..+++|++|++++|.+... +...+...++|++|++++|.....
T Consensus 59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 138 (344)
T d2ca6a1 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 138 (344)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence 4666777665431 223445566777788888777765432 233445567777888877743211
Q ss_pred --cC---------CCCCCCCCccEEEecCCcCcCc----cccccCCCCccceeeeccCCCCCC-----CcccCCCCCCcc
Q 002156 763 --FP---------EGGLPCAKLMRLEIYGCERLEA----LPKGLHNLTSLQELRIGRGVELPS-----LEEEDGLPTNLQ 822 (959)
Q Consensus 763 --~~---------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~ 822 (959)
+. ......+.|+.+++++|.+... +...+...+.|+.|++++|.+... +...+..+++|+
T Consensus 139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~ 218 (344)
T d2ca6a1 139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 218 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhc
Confidence 00 0012345777788777765432 222344567788888888776531 223455677788
Q ss_pred eEEccCCchhhhhhhhhccCCCCCCCccEEEEcccCCCccccc---------CCCCCceEeeccCCCCcc-----ccccc
Q 002156 823 SLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRGCDDDMVSFP---------LPASLTSLEISFFPNLER-----LSSSI 888 (959)
Q Consensus 823 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------~~~~L~~L~l~~~~~l~~-----l~~~~ 888 (959)
.|++++|+............+...++|++|++++|........ ...+|++|++++| .++. +...+
T Consensus 219 ~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l 297 (344)
T d2ca6a1 219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI 297 (344)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHH
Confidence 8888887654433333334456677788888877654322111 1245777777775 3442 23333
Q ss_pred C-CCCCCcEEecCCCc
Q 002156 889 V-DLQILTELRLYHCR 903 (959)
Q Consensus 889 ~-~l~~L~~L~l~~c~ 903 (959)
. .+++|++|++++|.
T Consensus 298 ~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 298 DEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHCTTCCEEECTTSB
T ss_pred HccCCCCCEEECCCCc
Confidence 2 45667777776643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.87 E-value=1.6e-10 Score=122.30 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCCceEeeccChhh----HHHHHhhcCCCCccEEeecccCCCcc-----cCccccCCCCcceeeccccccccc----cCC
Q 002156 699 PSLKSLGVFECSKL----ESIAERLDNNTSLEIISIGSCGNLKI-----LPSGLHNLCQLQEIEIWNCGNLVS----FPE 765 (959)
Q Consensus 699 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~l~~----~~~ 765 (959)
+.|+.+.+++|... ..+...+..++.|++|++++|.+... +...+..+++|++|++++|..... +..
T Consensus 158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~ 237 (344)
T d2ca6a1 158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237 (344)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence 35566666655432 23344445555566666655544321 122344455555555555532111 222
Q ss_pred CCCCCCCccEEEecCCcC
Q 002156 766 GGLPCAKLMRLEIYGCER 783 (959)
Q Consensus 766 ~~~~~~~L~~L~l~~~~~ 783 (959)
.+..+++|++|++++|.+
T Consensus 238 ~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 238 ALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp HGGGCTTCCEEECTTCCC
T ss_pred cccccccchhhhhhcCcc
Confidence 233344455555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.5e-09 Score=97.18 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=88.1
Q ss_pred ceeEEEecCCCCccccccccccCcccEEeccCC-CCcccc-hhhhccccccEEeccCcchhhhh-hHhhhcccccceeec
Q 002156 90 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT-HIRALP-ESVNKLYNLHTLLLEDCRELKKL-CADMGNLIKLHHHNN 166 (959)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~n-~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l 166 (959)
....++++++.+..+|..+..+++|+.|+++++ .|+.++ .+|.++++|+.|++++| .+..+ |..|..+++|++|+|
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence 445688899999999999999999999999876 599995 56899999999999995 67777 455999999999999
Q ss_pred CCCCcccccccccccccCCceeceEEeccC
Q 002156 167 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKD 196 (959)
Q Consensus 167 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 196 (959)
++|+ ++.+|.++....+|++|++..+...
T Consensus 88 s~N~-l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 88 SFNA-LESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cCCC-CcccChhhhccccccccccCCCccc
Confidence 9999 9999988655567888877555443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=9e-07 Score=80.52 Aligned_cols=83 Identities=25% Similarity=0.135 Sum_probs=41.9
Q ss_pred cccccCcccEEeccCCCCcccc---hhhhccccccEEeccCcchhhhhhH-hhhcccccceeecCCCCccccccc-----
Q 002156 107 SIGDLRYLRYLNLSGTHIRALP---ESVNKLYNLHTLLLEDCRELKKLCA-DMGNLIKLHHHNNSNTDSLEEMPL----- 177 (959)
Q Consensus 107 ~~~~l~~L~~L~L~~n~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~----- 177 (959)
.+..+++|++|+|++|+|+.++ ..+..+++|++|++++ +.+..+++ ...+..+|++|++++|. +.....
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y 137 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTY 137 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC-cCcCcccchhH
Confidence 3445566666666666655442 3345566666666666 34444443 12233356666666665 332211
Q ss_pred ---ccccccCCceeceE
Q 002156 178 ---GIGKLTCLQTLCNF 191 (959)
Q Consensus 178 ---~i~~L~~L~~L~~~ 191 (959)
-+..+++|+.|+..
T Consensus 138 ~~~i~~~~P~L~~LDg~ 154 (162)
T d1koha1 138 ISAIRERFPKLLRLDGH 154 (162)
T ss_dssp HHHHHTTSTTCCEETTE
T ss_pred HHHHHHHCCCCCEECcC
Confidence 13455666666543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=6.9e-07 Score=81.30 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=63.5
Q ss_pred CCCCceeEEEecCCCCcccc---ccccccCcccEEeccCCCCcccch-hhhccccccEEeccCcchhhh-------hhHh
Q 002156 86 FKLQRLRAFSLRGYHIFELP---DSIGDLRYLRYLNLSGTHIRALPE-SVNKLYNLHTLLLEDCRELKK-------LCAD 154 (959)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~-------lp~~ 154 (959)
.++++|++|+|++|+|+.++ ..+..+++|++|+|++|.|+++++ ......+|+.|++++|..... ....
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 68999999999999998763 457889999999999999999865 233455799999999643321 2234
Q ss_pred hhcccccceee
Q 002156 155 MGNLIKLHHHN 165 (959)
Q Consensus 155 i~~L~~L~~L~ 165 (959)
+..+++|++||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 67899999997
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.79 E-value=0.00045 Score=62.33 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=17.6
Q ss_pred CCCcceEEccCCchhhhhhhhhccCCCCCCCccEEEEcc
Q 002156 818 PTNLQSLDIWGNIEIWKSMIERGRGFHGFSSLRRLEIRG 856 (959)
Q Consensus 818 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (959)
.+.|++|++++|.............+..-++|++|++++
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 109 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence 345555555555433333322223344444555555544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.77 E-value=0.00028 Score=63.73 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCceEeeccCh-hhH----HHHHhhcCCCCccEEeecccCCCcc----cCccccCCCCcceeeccccc
Q 002156 699 PSLKSLGVFECS-KLE----SIAERLDNNTSLEIISIGSCGNLKI----LPSGLHNLCQLQEIEIWNCG 758 (959)
Q Consensus 699 ~~L~~L~l~~~~-~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~ 758 (959)
+.|++|+|+++. +.. .+...+...+.|++|++++|.+... +...+...+.|++|++++|.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~ 83 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 83 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence 467777776543 222 2344556666677777766654321 12223334555555555553
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.71 E-value=0.0047 Score=55.33 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCCCceeEEEecCCCCcc-----ccccccccCcccEEeccCCCCc-----ccchhhhccccccEEeccCc-chh-----
Q 002156 85 LFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTHIR-----ALPESVNKLYNLHTLLLEDC-REL----- 148 (959)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~-~~~----- 148 (959)
+...++|+.|++++|.++. +-..+...+.++.+++++|.+. .+...+...+.|+.++|+.+ +.+
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~ 121 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 121 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence 3455566666666665532 2233445556666666665543 12334445555555444321 111
Q ss_pred hhhhHhhhcccccceeecCCC
Q 002156 149 KKLCADMGNLIKLHHHNNSNT 169 (959)
Q Consensus 149 ~~lp~~i~~L~~L~~L~l~~~ 169 (959)
..+...+.+.+.|++|+++.+
T Consensus 122 ~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 122 MEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCcCEEeCcCC
Confidence 123333445555555555444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.66 E-value=0.0013 Score=59.24 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=8.3
Q ss_pred ccCCCCCCcEEecCC
Q 002156 887 SIVDLQILTELRLYH 901 (959)
Q Consensus 887 ~~~~l~~L~~L~l~~ 901 (959)
.+...++|++|+++.
T Consensus 127 ~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 127 MLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHCSSCCEEECCC
T ss_pred HHHhCCCcCEEeCcC
Confidence 444555666666554
|