Citrus Sinensis ID: 002164
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 958 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.935 | 0.933 | 0.789 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.898 | 0.917 | 0.787 | 0.0 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.213 | 0.277 | 0.257 | 2e-09 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.161 | 0.211 | 0.242 | 8e-06 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.132 | 0.193 | 0.287 | 9e-06 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.164 | 0.215 | 0.229 | 3e-05 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.152 | 0.199 | 0.248 | 0.0001 | |
| P14740 | 767 | Dipeptidyl peptidase 4 OS | no | no | 0.233 | 0.292 | 0.251 | 0.0001 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.152 | 0.199 | 0.265 | 0.0003 | |
| P28843 | 760 | Dipeptidyl peptidase 4 OS | no | no | 0.233 | 0.294 | 0.255 | 0.0003 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1450 bits (3753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/874 (78%), Positives = 770/874 (88%), Gaps = 13/874 (1%)
Query: 82 AVATEDEDNLEGR--YRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELAR 139
+A ED+D YRLPP EI++IVDAPPLP LSFSP +DKILFLKRRALPPL +LA+
Sbjct: 76 GLAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAK 135
Query: 140 PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD 199
PEEKLAG+RIDG NTRSRMSFYTGIGIH+L DG LG E + G+P+GA++NFVTWSQD
Sbjct: 136 PEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQD 195
Query: 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259
G+HL+FS+R+D ED++S KLR+W+ADV++G+ARPLF+SP+IYLNAIFD+FVWVNNSTLLV
Sbjct: 196 GRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLV 255
Query: 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319
CTIPL RG PP+KP VP GPK+QSNE +++QVRTFQDLLKDEYD DLFDYYAT+QLVL
Sbjct: 256 CTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLA 315
Query: 320 SLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR 379
S DGTVK IGPPAVYTS+DPSPD+KY++ISSIHRPYS+IVPCGRFP++V +WT DG F+R
Sbjct: 316 SFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIR 375
Query: 380 ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439
ELCDLPLAEDIPIA +SVRKG RSI WR DKP+ LYW ETQDGGDAKVEV+PRDI+Y +
Sbjct: 376 ELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMEN 435
Query: 440 AEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499
AEP+ GE PEILHKLDLRY G SWCD+SLALVYESWYKTR+TRTWVISP KDV+PRILF
Sbjct: 436 AEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILF 495
Query: 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559
DRSSEDVYSDPGSPM+RRT+ GTYVIAK+KK+ DE TYILLNG GATPEGN+PFLDLFDI
Sbjct: 496 DRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDI 554
Query: 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619
NTGSKERIW+SDKEKYYET VALMSD+T+G+L L +LKILTSKESKTENTQYY+Q WP+K
Sbjct: 555 NTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEK 614
Query: 620 KSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPG 679
K QITDFPHPYPQLASL KE+I+YQRKDGVQL+ATLYLPPGYDPS+DGPLPCL WSYPG
Sbjct: 615 KQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPG 674
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
EFKSKDAAGQVRGSPNEFP IG+TS LLWLARGFAIL GPT PIIGEGDEEANDR+VEQL
Sbjct: 675 EFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQL 734
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799
V AEAA EEVVRRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT
Sbjct: 735 VTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 794
Query: 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
PFGFQNEDRTLWEAT+TYVEMSPFMSANK+KKPILL+HGE+DNNSGTLTMQSDRFFNALK
Sbjct: 795 PFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQSDRFFNALK 854
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKG 919
GHGAL RLVILPFESHGY+ARESIMHVLWETDRWLQKYC+S ++ +D
Sbjct: 855 GHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKTDSD----------S 904
Query: 920 APHLQNKTVAASGGGGTEADFEHDGCHLAPRSSL 953
+NKTV+ASGGG E +G RS L
Sbjct: 905 VADTENKTVSASGGGAPCEGPEAEGFSSMQRSLL 938
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 690 VRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGD---EEANDRFVEQLVACAEA 745
V G P G + + WL RG+++L G G N + ++
Sbjct: 435 VHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILD 494
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTP 800
AVE V +G+A+ S++AV G SYG + T L P F CG+ G N + + P
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPP 554
Query: 801 F--GFQNE-------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851
+ GF+ + D + E + SP A+++ KPI+++ G N+ +S
Sbjct: 555 YWLGFRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGA--NDPRVKQAES 612
Query: 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+F AL+ ++ P E HG ++ M + +LQ+
Sbjct: 613 DQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIA 617
Query: 796 ------------RTLTPFGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T F + N D +WE ++ SP ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVETGFPYSNSCLPDLNVWEEM---LDKSPIKYIPQVKTPVLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D Q ++ ALK RL++ P +H + E+ WL +
Sbjct: 675 DRR--VPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 746 AVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTP 800
AV+E ++R P ++ V G SYG FMT N + + F + + N ++
Sbjct: 496 AVDEAIKRDPHIDPKRLGVTGGSYGGFMT-NWIVGQTNRFKAAVTQRSISNWISFHGVSD 554
Query: 801 FGFQNED----RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856
G+ D ++E T + SP A ++ P+L++HGE D+ Q+++ F
Sbjct: 555 IGYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDDRCP--IEQAEQLFI 612
Query: 857 ALKGHGALCRLVILPFESH 875
ALK G +LV P SH
Sbjct: 613 ALKKMGKETKLVRFPNASH 631
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AV++V++ ++A+ G S+G F++ +L+ P + IAR+ N
Sbjct: 558 QDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIV 617
Query: 796 ------------RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
T F + N+ ++ SP ++K P+LL+ G+ED
Sbjct: 618 SMMGTTDIPDWCMVETGFPYSNDYLPDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRR 677
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q +++ALK RL++ P +H + E T WL +
Sbjct: 678 --VPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797
Q V + AVE+V++ ++A+ G S+G F++ +L+ P + + R+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIA 617
Query: 798 ------------LTPFGFQNE-----DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
+ GF D ++W A ++ SP A ++K P+LL+ G+E
Sbjct: 618 SMMGSTDIPDWCMVEAGFSYSSDCLPDLSVWAAM---LDKSPIKYAPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ LK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P14740|DPP4_RAT Dipeptidyl peptidase 4 OS=Rattus norvegicus GN=Dpp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL---WLARG 712
+ LPP +D SK PL ++ P K+ DAA ++ N + ST ++ + RG
Sbjct: 529 MILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL----NWATYLASTENIIVASFDGRG 583
Query: 713 FAILGGPTTPIIGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA 770
G I + G E D+ A + ++ G ++A+ G SYG
Sbjct: 584 SGYQGDKIMHAINKRLGTLEVEDQI---------EAARQFLKMGFVDSKRVAIWGWSYGG 634
Query: 771 FMTANLLAHAPHLFCCGIA-----RSGAYNRTLTP--FGFQNEDRTLWEATSTYVEMSPF 823
++T+ +L +F CGIA R Y+ T G + L Y +
Sbjct: 635 YVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL----DHYRNSTVM 690
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 691 SRAENFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 748
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 749 HQHIYSHMSHFLQQ-CFS 765
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones (By similarity). Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
Q V + AVE+V++ S +A+ G S+G F++ +L+ P + +AR+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIA 617
Query: 796 ----RTLTP--------FGFQNE---DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE 840
T P F F ++ D ++W + ++ SP ++K P+LL+ G+E
Sbjct: 618 SMLGSTDIPDWCVVEAGFPFSSDCLPDLSVW---AEMLDKSPIRYIPQVKTPLLLMLGQE 674
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMH-VLW 888
D Q ++ ALK RL++ P +H + E S M+ VLW
Sbjct: 675 DRR--VPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 OS=Mus musculus GN=Dpp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 34/258 (13%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ LPP +D SK PL ++ P K+ DA+ ++ N + ST ++ A
Sbjct: 522 MILPPHFDKSKKYPLLLDVYAGPCSQKA-DASFRL----NWATYLASTENII-----VAS 571
Query: 716 LGGPTTPIIGEGDEEANDRFVEQL-VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G + G+ A +R + L V A + V+ G ++A+ G SYG ++T+
Sbjct: 572 FDGRGSGYQGDKIMHAINRRLGTLEVEDQIEAARQFVKMGFVDSKRVAIWGWSYGGYVTS 631
Query: 775 NLLAHAPHLFCCGIA-----RSGAYNRTLT------PFGFQNEDRTLWEATSTYVEMSPF 823
+L +F CGIA R Y+ T P N D Y +
Sbjct: 632 MVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPIPEDNLDH--------YRNSTVM 683
Query: 824 MSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A K+ LL+HG D+N QS + AL G + + E HG A+ +
Sbjct: 684 SRAEHFKQVEYLLIHGTADDN--VHFQQSAQISKALVDAGVDFQAMWYTDEDHGIASSTA 741
Query: 883 IMHVLWETDRWLQKYCVS 900
H+ +LQ+ C S
Sbjct: 742 HQHIYSHMSHFLQQ-CFS 758
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 958 | ||||||
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.981 | 0.978 | 0.802 | 0.0 | |
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.938 | 0.984 | 0.827 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.956 | 0.947 | 0.815 | 0.0 | |
| 255548453 | 926 | dipeptidyl-peptidase, putative [Ricinus | 0.919 | 0.951 | 0.800 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.932 | 0.986 | 0.810 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.953 | 0.949 | 0.777 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.938 | 0.934 | 0.789 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.936 | 0.933 | 0.790 | 0.0 | |
| 332278170 | 960 | RecName: Full=Probable glutamyl endopept | 0.935 | 0.933 | 0.789 | 0.0 | |
| 18086370 | 960 | At2g47390/T8I13.23 [Arabidopsis thaliana | 0.935 | 0.933 | 0.787 | 0.0 |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1591 bits (4119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/965 (80%), Positives = 859/965 (89%), Gaps = 25/965 (2%)
Query: 8 LHKVCHRGVSLLT---PSSLSPPIFLCLKL-----GRVPGHLRT-----HSIKTTTAMTA 54
++K HR +SLL+ P SLSPP FL L L R G LRT T AM++
Sbjct: 3 INKAYHR-LSLLSHHLPFSLSPPHFLSLSLPRFTSTRTRGRLRTLPSCAGGTTTRAAMSS 61
Query: 55 SRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIVDAP 109
SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IVDAP
Sbjct: 62 SRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIVDAP 117
Query: 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQ 169
PLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IGIHQ
Sbjct: 118 PLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIGIHQ 177
Query: 170 LFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229
L PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV+TG
Sbjct: 178 LMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVD-EENSSSKLRIWVADVETG 236
Query: 230 KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289
KARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE++++
Sbjct: 237 KARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQKNV 296
Query: 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILIS 349
+QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+LIS
Sbjct: 297 VQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYLLIS 356
Query: 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409
SIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINWR+D
Sbjct: 357 SIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINWRAD 416
Query: 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469
KPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDDSLA
Sbjct: 417 KPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDDSLA 476
Query: 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529
LVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIAKIK
Sbjct: 477 LVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIAKIK 536
Query: 530 KENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEG 589
KENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ+EG
Sbjct: 537 KENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQSEG 596
Query: 590 DLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG 649
DLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+RKDG
Sbjct: 597 DLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYERKDG 656
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
VQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS LLWL
Sbjct: 657 VQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSALLWL 716
Query: 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769
AR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGHSYG
Sbjct: 717 ARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGHSYG 776
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSANK+
Sbjct: 777 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSANKI 836
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE
Sbjct: 837 KRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 896
Query: 890 TDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLA 948
TDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G H
Sbjct: 897 TDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGFHPR 956
Query: 949 PRSSL 953
R+SL
Sbjct: 957 ARASL 961
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1580 bits (4092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/909 (82%), Positives = 833/909 (91%), Gaps = 10/909 (1%)
Query: 52 MTASRLHHLVPIHSVSSKND---GTNGSLSSSNAVATEDEDN--LEGRYRLPPPEIREIV 106
M++SR HLVPI++ +++ D G+NGS+SS+ EDE+N L YRLPPPEI++IV
Sbjct: 1 MSSSRFLHLVPINAAAAEGDTGVGSNGSVSST----AEDEENSALGSGYRLPPPEIKDIV 56
Query: 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIG 166
DAPPLPALSFSPQRDKILFLKRRALPPLEELA+PEEKLAG+RIDGKCNTRSRMSFYT IG
Sbjct: 57 DAPPLPALSFSPQRDKILFLKRRALPPLEELAKPEEKLAGIRIDGKCNTRSRMSFYTSIG 116
Query: 167 IHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV 226
IHQL PDG LG E E+ GFPDGAK+NFV+WS +G+HL+FSIR+D E++SSSKLR+WVADV
Sbjct: 117 IHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEENSSSKLRIWVADV 176
Query: 227 DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEK 286
+TGKARPLFQSPDI+LNA+FDNFVWV++STLLVCTIPL RGDPPKKPLVP GPK+QSNE+
Sbjct: 177 ETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPSGPKVQSNEQ 236
Query: 287 RDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYI 346
++++QVRTFQDLLKDEYD DLFDYYATTQLVL SLDGT+KEIGPPAVYTS+DPSPD+KY+
Sbjct: 237 KNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSMDPSPDQKYL 296
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406
LISSIHRPYSFIVPCGRFP++V +WT++G FVRELCDLPLAEDIPIAFNSVRKGMRSINW
Sbjct: 297 LISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSVRKGMRSINW 356
Query: 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
R+DKPSTLYW ETQD GDAKVEV+PRDI+Y Q AEP+ GE ILHKLDLRYGGISWCDD
Sbjct: 357 RADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLRYGGISWCDD 416
Query: 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526
SLALVYESWYKTRRTRTWVISPGS+DV+PRILFDRSSEDVYSDPGSPM+RRT+ GTYVIA
Sbjct: 417 SLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRRTTAGTYVIA 476
Query: 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586
KIKKENDEGTYILLNG+GATPEGNIPFLDLFDINTGSKERIWESDKEKYYET VALMSDQ
Sbjct: 477 KIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETVVALMSDQ 536
Query: 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQR 646
+EGDLYLNQLKILTSKESKTENTQY+IQSW DKK+CQIT+FPHPYPQLASLQKE+I+Y+R
Sbjct: 537 SEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASLQKEMIRYER 596
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
KDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQVRGSPNEF IG TS L
Sbjct: 597 KDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGPTSAL 656
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
LWLAR FAIL GPT PIIGEG+EEANDR+VEQLVA AEAAVEEV+RRGVAHP+KIAVGGH
Sbjct: 657 LWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAHPNKIAVGGH 716
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826
SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT TYVEMSPFMSA
Sbjct: 717 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTYVEMSPFMSA 776
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886
NK+K+P+LL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV
Sbjct: 777 NKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 836
Query: 887 LWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGC 945
LWETDRWLQK+CVSNT + + +L D+ + ++KTV ASGGG E A+ EH+G
Sbjct: 837 LWETDRWLQKHCVSNTTNVNENLDTCNDEAKEEITDPESKTVPASGGGNPELAESEHEGF 896
Query: 946 HLAPRSSLC 954
H R+SLC
Sbjct: 897 HPRARASLC 905
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/932 (81%), Positives = 835/932 (89%), Gaps = 16/932 (1%)
Query: 36 RVPGHLRTHS---IKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92
R PGHLRTH K+ MT SR +LVP++S++++N G + S S+A +TEDE+ L
Sbjct: 38 RTPGHLRTHHSKRFKSICTMT-SRFPNLVPLNSIAAENVGGRSNDSVSSA-STEDEEALA 95
Query: 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGK 152
G+Y+LPPPEI+ IVDAPPLPALSFSPQRDKILFLKRR+LPPL ELARPEEKLAG+RIDGK
Sbjct: 96 GKYQLPPPEIKNIVDAPPLPALSFSPQRDKILFLKRRSLPPLAELARPEEKLAGMRIDGK 155
Query: 153 CNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE 212
CNTRSRMSFYTGIGIHQL PDG LG E EI G+PDGAK+NFVTWS DG+HLAFSIR D E
Sbjct: 156 CNTRSRMSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEE 215
Query: 213 DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272
D+SSSKLRVWVA+V+TG+ARPLFQSP++YLNA+FD FVWV+NSTLLVC IP RGD PKK
Sbjct: 216 DNSSSKLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKK 275
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
PLVP GPK+QSNE++++IQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT KEIG PA
Sbjct: 276 PLVPSGPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPA 335
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
VYTS+DPSPD+KY+L+SSIHRPYSF VPCGRFP++V VWTTDG FVRE+CDLPLAEDIPI
Sbjct: 336 VYTSMDPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPI 395
Query: 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH 452
A +SVRKGMR+INWR+DKPSTLYWAETQDGGDAKVEV+PRDIIYTQ AEP++GE PEILH
Sbjct: 396 AISSVRKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILH 455
Query: 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512
KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP SKDV+PRILFDRSSEDVYSDPGS
Sbjct: 456 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGS 515
Query: 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572
PM+RRT GTYVIAKIKKENDEGTYILLNG+GAT EGNIPFLDLFDIN GSKERIWES+K
Sbjct: 516 PMLRRTPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEK 575
Query: 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYP 632
EKYYET V+LMSD EGDL L++LK+LTSKESKTENTQY I+ WP+KK CQIT+FPHPYP
Sbjct: 576 EKYYETVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYP 635
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
QLASLQKE+IKYQR DGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG
Sbjct: 636 QLASLQKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 695
Query: 693 SPNEFPRIGSTSVLLWLARG----------FAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
SPNEF IG TS LLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA
Sbjct: 696 SPNEFAGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYVEQLVAS 755
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
AEAAVEEV+RRGVAHP+KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG
Sbjct: 756 AEAAVEEVIRRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 815
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
FQNEDRTLWEAT TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHG
Sbjct: 816 FQNEDRTLWEATGTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHG 875
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPH 922
ALCRLVILPFESHGYAARESI+HVLWETDRWLQK+CVSN++D S +L KD+ SKG
Sbjct: 876 ALCRLVILPFESHGYAARESILHVLWETDRWLQKHCVSNSSDASAELDACKDEVSKGVTD 935
Query: 923 LQNKTVAASGGGGTE-ADFEHDGCHLAPRSSL 953
N+ V ASGGGG E ADFEH+G + PRS L
Sbjct: 936 SDNQAVVASGGGGPELADFEHEGFYPLPRSLL 967
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548453|ref|XP_002515283.1| dipeptidyl-peptidase, putative [Ricinus communis] gi|223545763|gb|EEF47267.1| dipeptidyl-peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1526 bits (3950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/924 (80%), Positives = 807/924 (87%), Gaps = 43/924 (4%)
Query: 37 VPGHLRTHSIKTTT---AMTA--SRLHHLVPIHSVSSKNDGTNG-SLSSSNAVATEDEDN 90
PGHLRTHS T+ MTA SRL +L+P + + + G S ++S + ED++
Sbjct: 39 TPGHLRTHSRSTSNFKPIMTAATSRLANLLPASAFAGEAADGGGGSNNASTNIVAEDDEA 98
Query: 91 LEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRID 150
L G+Y+LPPPEIR+IVDAPPLPALSFSPQRDKILFLKRRALPPL ELARPEEKLAG+RID
Sbjct: 99 LGGKYQLPPPEIRDIVDAPPLPALSFSPQRDKILFLKRRALPPLAELARPEEKLAGMRID 158
Query: 151 GKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRID 210
GKCNTRSRMSFYTGI IHQL PDG LG E E+ GFPDGAK+NFVTWS DG+HL+FSIR+D
Sbjct: 159 GKCNTRSRMSFYTGINIHQLMPDGTLGPEKEVHGFPDGAKINFVTWSLDGRHLSFSIRVD 218
Query: 211 AEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270
ED+SSSKLRVWVADV+TGKARPLFQS D+YLNA+FDNFVWV+ S+L
Sbjct: 219 EEDNSSSKLRVWVADVETGKARPLFQSSDVYLNAVFDNFVWVDESSL------------- 265
Query: 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP 330
TFQDLLKDEYDEDLFDYYAT+QLVL SLDGT+KEIGP
Sbjct: 266 -----------------------TFQDLLKDEYDEDLFDYYATSQLVLASLDGTLKEIGP 302
Query: 331 PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390
PAVYTS+DPSPD+KYILISSIHRPYSFIVPCGRFP++V +WTTDG FVRELCDLPLAEDI
Sbjct: 303 PAVYTSMDPSPDQKYILISSIHRPYSFIVPCGRFPKKVEIWTTDGKFVRELCDLPLAEDI 362
Query: 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450
PIAFNSVRKGMR+INWRSDKPSTLYWAETQDGGDAKVEV+PRDI+Y Q AEP+ GE PEI
Sbjct: 363 PIAFNSVRKGMRAINWRSDKPSTLYWAETQDGGDAKVEVSPRDIVYAQLAEPLDGEQPEI 422
Query: 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510
L KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG++DV+PRILFDRSSEDVYSDP
Sbjct: 423 LQKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGAEDVSPRILFDRSSEDVYSDP 482
Query: 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570
GSPMMRRT +G YVIAKIKKENDEGTY+LLNG+GATPEG+IPFLDLFDINTGSKERIW+S
Sbjct: 483 GSPMMRRTPSGNYVIAKIKKENDEGTYVLLNGSGATPEGDIPFLDLFDINTGSKERIWQS 542
Query: 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630
DKEK+YE+ VALMSD EGDLYL+QLK+LTSKESKTENTQYYIQSWPDKK+CQIT+FPHP
Sbjct: 543 DKEKHYESVVALMSDIKEGDLYLDQLKVLTSKESKTENTQYYIQSWPDKKACQITNFPHP 602
Query: 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV 690
YPQLASLQKE+I+YQRKDGVQL+ATLYLPPGYDPSKDGPLPCL WSYPGEFKSKDAAGQV
Sbjct: 603 YPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQV 662
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
RGSPNEF IG TSVLLWLAR FAIL GPT PIIGEGD+EANDR+VEQLVA AEAAVEEV
Sbjct: 663 RGSPNEFAGIGPTSVLLWLARRFAILAGPTIPIIGEGDDEANDRYVEQLVASAEAAVEEV 722
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+RRGVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL
Sbjct: 723 IRRGVAHPGKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 782
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
WEAT+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL
Sbjct: 783 WEATTTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 842
Query: 871 PFESHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAA 930
PFESHGYAARESIMHVLWETDRWLQKYCV NT+D + +L KD+ SKG +N VAA
Sbjct: 843 PFESHGYAARESIMHVLWETDRWLQKYCVPNTSDVNAELGARKDEASKGVIDTENNAVAA 902
Query: 931 SGGGGTE-ADFEHDGCHLAPRSSL 953
+GGGG E AD EH+G H PRS L
Sbjct: 903 TGGGGPELADSEHEGFHCIPRSLL 926
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1524 bits (3947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/898 (81%), Positives = 812/898 (90%), Gaps = 5/898 (0%)
Query: 56 RLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALS 115
RL +LVP++S++++N + + S S+ TE+E+ L +Y+LPPPEI++IVDAPPLPALS
Sbjct: 4 RLGNLVPLNSIAAENVVSRSNASVSSTSTTEEEEALACKYQLPPPEIKDIVDAPPLPALS 63
Query: 116 FSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175
SPQ+DKILFLKRR+LPPL ELARPEEKLAGLRIDGKCNT+SRMSFYTGIGIHQL PDG
Sbjct: 64 LSPQKDKILFLKRRSLPPLAELARPEEKLAGLRIDGKCNTKSRMSFYTGIGIHQLMPDGT 123
Query: 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235
LG E E+ G+PDGAK+NFVTWS DG+HLAFSIR+ ED+SSSKLRVWVA+++TG+ARPLF
Sbjct: 124 LGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDNSSSKLRVWVANMETGQARPLF 183
Query: 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295
QSPD+YLNA+FDNFVWV+NS+LLVCTIP RGDPPKKP VP GPK+QSNE+++++QVRTF
Sbjct: 184 QSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPSGPKIQSNEQKNVVQVRTF 243
Query: 296 QDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY 355
QDLLKDEYDEDLFDYY T+Q+VL SLDGT KE+GPPAVYTS+DPSPD+ Y+LISSIHRPY
Sbjct: 244 QDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSMDPSPDQNYLLISSIHRPY 303
Query: 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415
SFIVP GRFP++V VWTTDG FVRELCDLPLAEDIPIA +SVRKG R+INWR+DKPSTLY
Sbjct: 304 SFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSVRKGKRAINWRADKPSTLY 363
Query: 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475
WAETQDGGDAKVEV+PRDI+YTQ AEP++GE PEILHKLDLRYGGI WCDDSLALVYESW
Sbjct: 364 WAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLRYGGIYWCDDSLALVYESW 423
Query: 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535
YKTRRTRTWVISPGSKD +PRILFDRSSEDVYSDPGSPM+RRT GTYVIAKIKKENDEG
Sbjct: 424 YKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRRTPAGTYVIAKIKKENDEG 483
Query: 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQ 595
TY+LL G+GATPEGNIPFLDLFDINTGSKERIWESDKE+YYET VALM D EGDL L++
Sbjct: 484 TYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYETVVALMLDYEEGDLLLDR 543
Query: 596 LKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
L+ILTSKESKTEN QY+IQ WP+KK+CQIT+FPHPYPQLASLQKE+I+YQRKDGVQL+AT
Sbjct: 544 LQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASLQKEMIRYQRKDGVQLTAT 603
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LYLPPGYD SKDGPLPCL WSYPGEFKSKDAAGQVRGSPN+F IGSTS LLW FAI
Sbjct: 604 LYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKFAGIGSTSALLW----FAI 659
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
L GPT PIIGEGDEEANDR+VEQLVA EAAVEEV++RGVAHP+KIAVGGHSYGAFMTAN
Sbjct: 660 LSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAHPNKIAVGGHSYGAFMTAN 719
Query: 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
LLAHAPHLFCCGIARSGAYNRTLTPFGFQ+EDRTLWEAT+TYVEMSPFMSANK+KKPILL
Sbjct: 720 LLAHAPHLFCCGIARSGAYNRTLTPFGFQHEDRTLWEATTTYVEMSPFMSANKIKKPILL 779
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+HGEEDNNSGTL MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ
Sbjct: 780 IHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 839
Query: 896 KYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE-ADFEHDGCHLAPRSS 952
K+CV N D S +L KD+ SKG N+ V ASGGGG E ADFEH+G + PR S
Sbjct: 840 KHCVQNPTDASAELDACKDEVSKGVRDSDNQAVVASGGGGPELADFEHEGFYSLPRFS 897
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1505 bits (3897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/923 (77%), Positives = 806/923 (87%), Gaps = 10/923 (1%)
Query: 41 LRTHSIKTTTAMTASRLHHLVPIHSVSSKNDG---TNGSLSSSNAVAT----EDEDNLEG 93
LR + +M+ SR H+VP+ +VS+++ NGS+SSS+ T ED+ L
Sbjct: 40 LRRRTAANFASMSTSRFRHIVPLAAVSTEDGAGGAVNGSVSSSSTADTYYDYEDDLALGV 99
Query: 94 RYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKC 153
Y +PPPEIR+IVDAPP+PALSFSP RDKI+FLKRRALPPL +LARPEEKLAGLRIDG C
Sbjct: 100 GYCVPPPEIRDIVDAPPVPALSFSPFRDKIIFLKRRALPPLTDLARPEEKLAGLRIDGYC 159
Query: 154 NTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED 213
N+RSRMSFYTG+GIH++ PDG LG E+EI GFP+GAK+NFVTWS D +HL+FSIR++ ED
Sbjct: 160 NSRSRMSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEED 219
Query: 214 SSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273
S++SKL VWVADV+TGKARPLFQSPD+YLNA+F+N+VWV+NSTLLVCTIP RG PPKKP
Sbjct: 220 SNTSKLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKP 279
Query: 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAV 333
LVP GPK+QSNE+++IIQVRTFQDLLKDEYDEDLFDYYAT+QLVL SLDGT K+ GPPA+
Sbjct: 280 LVPGGPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAI 339
Query: 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393
YTSLDPSPDEKYI+I S+HRPYSFIVPCGRFP++V +W+ DG FVRE+CDLPLAEDIPI
Sbjct: 340 YTSLDPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPIT 399
Query: 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453
NSVRKGMRSINWR+DKPSTLYW ETQDGGDAKVEV+PRDIIY+Q AE ++GE P ILHK
Sbjct: 400 SNSVRKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHK 459
Query: 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSP 513
LDLRYGGISWCDDSLA VYESWYKTRR +TWV+SPGS+DV PRILFDRSSEDVYSDPGSP
Sbjct: 460 LDLRYGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSP 519
Query: 514 MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573
M+RRT GTY+IAKIKK DEG YI+LNG+GATPEGN+PFLDLFDINTGSKERIWESDKE
Sbjct: 520 MLRRTQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKE 579
Query: 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ 633
KY+ET VALMSDQ EGDL L++LKIL SKESKTENTQY SWPDKK Q+T+FPHPYPQ
Sbjct: 580 KYFETVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQ 639
Query: 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS 693
LASLQKE+I+Y+RKDGVQL+ATLYLPPGY+PS DGPLPCL WSYPGEFKSKDAA QVRGS
Sbjct: 640 LASLQKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGS 699
Query: 694 PNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR 753
PNEF IGSTS LLWLA+ FAIL GPT PIIGEG+ EAND +VEQLVA AEAAVEEV+RR
Sbjct: 700 PNEFAGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIRR 759
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813
GVAHP KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA
Sbjct: 760 GVAHPKKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 819
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
T+TYVEMSPFMSANK+KKPILL+HGEEDNNSGTLTMQSDRFFNALKGHGAL RLVILP+E
Sbjct: 820 TNTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALSRLVILPYE 879
Query: 874 SHGYAARESIMHVLWETDRWLQKYCVSNTADRSTDLKVS--KDDESKGAPHLQNKTVAAS 931
SHGY+ARESIMHVLWET RWL KYCVSNT+D D K++ SKG ++K VAAS
Sbjct: 880 SHGYSARESIMHVLWETGRWLHKYCVSNTSDAGEDHDTGTVKENISKGIADAESKVVAAS 939
Query: 932 GGGGTEA-DFEHDGCHLAPRSSL 953
GGG EA D EH+ H PR L
Sbjct: 940 GGGSKEACDLEHEESHSLPRKFL 962
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/912 (78%), Positives = 792/912 (86%), Gaps = 13/912 (1%)
Query: 49 TTAMT---ASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M+ A+RL L + +++ G +NGS+S+S +DE L YRLPPPEIR
Sbjct: 59 TTVMSSRAAARLRCLASVCPGGAEDGGGTSNGSVSASATATEDDELALGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGHCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF+S DIYLNAIF++FVW++NSTLLV TIP RGDPPKKPLVP GPK S
Sbjct: 238 ADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYAT+QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGR P++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPST+YWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT+ GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTAAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVAHPSKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAHPSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NTAD T+ D+ K +K +GGG E F
Sbjct: 898 MHVLWETDRWLQKYCVPNTADADTN-----PDQFKEGSDSSDKVATGTGGGNPE--FGEH 950
Query: 944 GCHLAPRSSLCY 955
H R SL +
Sbjct: 951 EVHSKLRRSLLW 962
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1480 bits (3831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/910 (79%), Positives = 788/910 (86%), Gaps = 13/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTLYWAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 477
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 478 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 537
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 538 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 597
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 598 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 657
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 658 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 717
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 718 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 777
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 778 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 837
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 838 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 897
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 898 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 950
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 951 EVHSKLRRSL 960
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|332278170|sp|Q8VZF3.2|CGEP_ARATH RecName: Full=Probable glutamyl endopeptidase, chloroplastic; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/910 (78%), Positives = 787/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18086370|gb|AAL57645.1| At2g47390/T8I13.23 [Arabidopsis thaliana] gi|27363294|gb|AAO11566.1| At2g47390/T8I13.23 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/910 (78%), Positives = 786/910 (86%), Gaps = 14/910 (1%)
Query: 49 TTAM---TASRLHHLVPIHSVSSKNDG--TNGSLSSSNAVATEDEDNLEGRYRLPPPEIR 103
TT M +ASRL L S +++ G +NGSLS+S +DE + YRLPPPEIR
Sbjct: 59 TTVMASRSASRLRSLASACSGGAEDGGGTSNGSLSASATATEDDELAIGTGYRLPPPEIR 118
Query: 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYT 163
+IVDAPP+PALSFSP RDKILFLKRRALPPL +LARPEEKLAG+RIDG CNTRSRMSFYT
Sbjct: 119 DIVDAPPVPALSFSPHRDKILFLKRRALPPLADLARPEEKLAGVRIDGYCNTRSRMSFYT 178
Query: 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223
G+GIHQL PDG L E EI G PDG K+NFVTWS DGKHLAFSIR+D E+ +SSK VWV
Sbjct: 179 GLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVD-ENGNSSKPVVWV 237
Query: 224 ADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQS 283
ADV+TG ARPLF S DI+LNAIF++FVW++NSTLLV TIP RG+PPKKPLVP GPK S
Sbjct: 238 ADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLS 297
Query: 284 NEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343
NE + ++QVRTFQDLLKDEYD DLFDYYA++QLVL SLDGTVKE+G PAVYTSLDPS D
Sbjct: 298 NETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDH 357
Query: 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403
KY+L+SS+HRPYSFIVPCGRFP++V VWTTDG FVR+LCDLPLAEDIPIA NSVRKGMRS
Sbjct: 358 KYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRS 417
Query: 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463
INWR+DKPSTL WAETQDGGDAK+EV+PRDI+Y Q AEP+ GE PE+LHKLDLRYGGISW
Sbjct: 418 INWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISW 476
Query: 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
CDD+LALVYESWYKTRRTRTWVISPGS DV+PRILFDRSSEDVYSDPGS M+RRT GTY
Sbjct: 477 CDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTY 536
Query: 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583
VIAKIKKENDEGTY+LLNG+GATP+GN+PFLDLFDINTG+KERIWESDKEKY+ET VALM
Sbjct: 537 VIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALM 596
Query: 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIK 643
SDQ EGDL + +LKILTSKESKTENTQY +Q WPD+K QIT+FPHPYPQLASLQKE+I+
Sbjct: 597 SDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIR 656
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
YQRKDGVQL+ATLYLPPGYDPSKDGPLP LFWSYPGEFKSKDAAGQVRGSPNEF IGST
Sbjct: 657 YQRKDGVQLTATLYLPPGYDPSKDGPLPYLFWSYPGEFKSKDAAGQVRGSPNEFAGIGST 716
Query: 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763
S LLWLAR FAIL GPT PIIGEGDEEANDR+VEQLVA AEAAVEEVVRRGVA SKIAV
Sbjct: 717 SALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVADRSKIAV 776
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GGHSYGAFMTANLLAHAPHLF CGIARSGAYNRTLTPFGFQNEDRTLWEAT+ YVEMSPF
Sbjct: 777 GGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVYVEMSPF 836
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883
MSANK+KKPILL+HGEEDNN GTLTMQSDRFFNALKGHGALCRLV+LP ESHGY+ARESI
Sbjct: 837 MSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESI 896
Query: 884 MHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTEADFEHD 943
MHVLWETDRWLQKYCV NT+D T D+SK +K +GGG E F
Sbjct: 897 MHVLWETDRWLQKYCVPNTSDADT-----SPDQSKEGSDSADKVSTGTGGGNPE--FGEH 949
Query: 944 GCHLAPRSSL 953
H R SL
Sbjct: 950 EVHSKLRRSL 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 958 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.442 | 0.529 | 0.391 | 1.7e-80 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.442 | 0.529 | 0.391 | 1.7e-80 | |
| UNIPROTKB|Q47UC7 | 693 | CPS_4957 "Putative uncharacter | 0.275 | 0.380 | 0.236 | 4.3e-08 | |
| TIGR_CMR|CPS_4957 | 693 | CPS_4957 "conserved hypothetic | 0.275 | 0.380 | 0.236 | 4.3e-08 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.421 | 0.626 | 0.217 | 5.1e-08 | |
| WB|WBGene00001059 | 740 | dpf-6 [Caenorhabditis elegans | 0.429 | 0.555 | 0.215 | 5.3e-08 | |
| TIGR_CMR|SO_4252 | 662 | SO_4252 "prolyl oligopeptidase | 0.237 | 0.344 | 0.247 | 0.00023 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 172/439 (39%), Positives = 248/439 (56%)
Query: 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516
R I W ++ LAL+ E K ++ R ++ + + L +R+ D Y D G +
Sbjct: 372 RITDIDWAENHLALITERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAK 430
Query: 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576
G + ++ + + T ++ G GATP+G+ PFL + T +W+S +
Sbjct: 431 HYYPGKGQVVSLQ-QGAKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRLE 489
Query: 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLAS 636
L L+ L+++ ++ES TE+ + + K+S + + P
Sbjct: 490 SVRYVLN---------LDPLQLIINRESPTESPSLVLLN-AAKESV-LYEQPDGLSAYLG 538
Query: 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696
+QK+LI ++R DGV LS TLYLP Y + G LP L W+YP EF + AGQ+ S N+
Sbjct: 539 MQKQLITFKRADGVPLSGTLYLPANYT-KEQGTLPVLMWAYPREFNDPEVAGQISFSANQ 597
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFXXXXXXXXXXXXXXXXRRGVA 756
+P I + +A GFA+ + PII +GD+E+ND F G+A
Sbjct: 598 YPTISPRGPIPLVAEGFAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIA 657
Query: 757 HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816
+IAVGGHSYGAFM ANLLAH LF GIARSGAYNR+LTPFGFQNE+RT W+A
Sbjct: 658 DRKQIAVGGHSYGAFMVANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDI 716
Query: 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876
Y +MSPF A+K+K P+LL+HGE D NSGT +QS+R F+A++G G RLVILPFE H
Sbjct: 717 YQQMSPFNYADKIKSPLLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHS 776
Query: 877 YAARESIMHVLWETDRWLQ 895
Y A+ES+ H+L+E ++L+
Sbjct: 777 YTAKESLEHLLFEQSQFLK 795
|
|
| UNIPROTKB|Q47UC7 CPS_4957 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|CPS_4957 CPS_4957 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 69/292 (23%), Positives = 113/292 (38%)
Query: 619 KKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP 678
KK ++TD +A ++E + + +DGV++ L P Y K+G L S
Sbjct: 389 KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDY---KNGQRYPLIMSVH 445
Query: 679 GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA----NDR 734
G +S D G + + R G + A+G+A+ G+G + + ND
Sbjct: 446 GGPESHDKDGWMTA----YSRPGQLAA----AQGYAVFYPNYRGSTGKGVDYSKLGQND- 496
Query: 735 FXXXXXXXXXXXXXXXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ G+ + K+ + G SYG + +A F + G
Sbjct: 497 YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFVGIS 556
Query: 795 NRTLTPFG---FQNEDRTL------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
N+ L+ FG NE + W+ Y+E SP + + P+L++HG+ D
Sbjct: 557 NQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADPR-- 613
Query: 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
QS + +K HG RLV P E HG + RW+ Y
Sbjct: 614 VHPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 100/460 (21%), Positives = 177/460 (38%)
Query: 465 DDSLALVYESWYKTRRTRT-WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523
DD+ +YE + +R W S+D + FD +DP +R G
Sbjct: 214 DDTEYRIYEQPEQKSESRLLWSFKAFSEDSIWPLGFD-------ADPNILYVRAYHKGYE 266
Query: 524 VIAKIKKENDEGTYILLNGNGATP-EGNIPFLDL----FDINTGSKER--IWESDKEKYY 576
I K+ + + T L+ N T EG++ + L I+ G E W+ +
Sbjct: 267 AIFKVNLTDPKLTKELVYANEDTDVEGDLIYSQLKKKVIGISEGDGEEYTFWDPEYAGLQ 326
Query: 577 ETTVALMSDQTE--GDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQL 634
A++ + N+ + + S T+ YY +K I + Y QL
Sbjct: 327 NGLKAVLPNAHNYITQFSANERRYIVYSTSSTQPGTYYFGDRDEKVLFPIAE---RYSQL 383
Query: 635 ASLQ---KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
++ Q + + Y+ +D +++ A L +P G+ K LP + + + G S D+
Sbjct: 384 STEQLADTQYLSYEARDKLKIDAYLTVPKGF---KAKHLPTIIFPHGGPI-SYDS----- 434
Query: 692 GSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--EANDR-FXXXXXXXXXXXXX 748
N+F + RG+A+ G G E +A + +
Sbjct: 435 ---NDFDYWAQ----FFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQNDVEDGTR 487
Query: 749 XXXRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY---NRTLTPFGFQN 805
+G++ P +I + G SYG + A P L+ C ++ +G N + F N
Sbjct: 488 YLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLVRSSRRFTN 547
Query: 806 ED---RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR-FFNALKGH 861
+ + + + E SP A+K+ P+LL+HG++D + +Q R F+ LK
Sbjct: 548 YEVVKEQIGDDFNVLYERSPISKADKITIPVLLLHGDKDR---VVKVQHSREMFDELKSR 604
Query: 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901
+ L H Y + H L T + L K+ N
Sbjct: 605 KKNVEYIELENGGH-YLSNND--HRL-TTFKALDKFLADN 640
|
|
| WB|WBGene00001059 dpf-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 99/460 (21%), Positives = 177/460 (38%)
Query: 477 KTRRTRTWV----ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK-E 531
+T TWV I K + I FD+S+ +Y G + G V+ + +
Sbjct: 212 RTTEQNTWVEYLRIQHDDKAITMPITFDKSNNFMYWIMGDG----SDLGNLVVFPFEDPQ 267
Query: 532 NDEGTYILLN---GNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTE 588
E Y GN + L + ++ K ++ ++ E + E L++ +
Sbjct: 268 QKEILYTAQRAQIGNVLIHPTDKTLLAVTEVY--HKPELFVAN-ETFMEDLQYLVNMKPS 324
Query: 589 GDLYLNQLKI-----LTSKESKTENTQYYI-QSWPDKKSCQITDFPHPYPQLASLQKEL- 641
G + + + I L + S E Y+ + W K ++ P + +L K++
Sbjct: 325 GSMNIVSMSIDMSTWLVTYSSSDEPYDIYLYRRW--NKKAELFMSTRPELKKYTLNKQIG 382
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP--GEFKS--KDAAGQVRGSPNEF 697
++ +D + + A L LPP K +P Y G + + V G P
Sbjct: 383 FDFRARDEMTIQAYLSLPPQAPLLKSSQVPDGDRPYANLGMIPAVPQKMIVLVHGGPKAR 442
Query: 698 PRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE---EANDRFXXXXXXXXXXXXXXXXRR 753
G + + WL RG+++L G G N + +
Sbjct: 443 DHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAVSK 502
Query: 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPF--GFQNE 806
G+A+ S++AV G SYG + T L P F CG+ G N + + P+ GF+ +
Sbjct: 503 GIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLGFRKD 562
Query: 807 -------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859
D + E + SP A+++ KPI+++ G D +SD+F AL+
Sbjct: 563 LIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPR--VKQAESDQFVAALE 620
Query: 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899
++ P E HG ++ M + +LQ+ C+
Sbjct: 621 KKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ-CL 659
|
|
| TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 63/255 (24%), Positives = 102/255 (40%)
Query: 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG 692
Q+A ++ I + +DG ++ L LP G + +K+ LP + + G +D G
Sbjct: 402 QMAEVKP--ISFTNRDGQKIHGYLTLPYGKE-AKN--LPLVVNPHGGPHGIRDWWGF--D 454
Query: 693 SPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFXXXXXXXXXXXXXXXX 751
N+ +VL RG GG GE E+A ++
Sbjct: 455 PQNQLLAQNGMAVLQVNFRGS---GG-----YGERFEQAGYQKWGSDIQHDIIDATQYVI 506
Query: 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFG 802
+G +I + G S+G + AP +F C + +G Y+ L T G
Sbjct: 507 GQGFVDKERICIAGGSFGGYSALQSAVLAPDMFKCAVGFAGVYDLELMFDEGDVARTRSG 566
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
L + +T MSP + KLK +LLVHG ED + ++S ALK H
Sbjct: 567 TSYLKDVLGQDKATLKAMSPSENVAKLKANLLLVHGGEDERAPIEQLES--LEKALKNHN 624
Query: 863 ALCRLVILPFESHGY 877
+ +++ E HG+
Sbjct: 625 YPYQKLVMDNEGHGF 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.7871 | 0.8987 | 0.9179 | yes | no |
| Q8VZF3 | CGEP_ARATH | 3, ., 4, ., 2, 1, ., - | 0.7890 | 0.9352 | 0.9333 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XIV.2306.1 | hypothetical protein (967 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 958 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 6e-45 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 2e-21 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 1e-07 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 3e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 5e-06 | |
| COG0400 | 207 | COG0400, COG0400, Predicted esterase [General func | 2e-05 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 8e-05 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 7e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 6e-45
Identities = 130/674 (19%), Positives = 210/674 (31%), Gaps = 115/674 (17%)
Query: 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA 332
L + S + + T D LK Y + VS TV+ +
Sbjct: 11 ALARVSDPRVSPPGGRLAYILTGLDFLKPLY----------KSSLWVSDGKTVRLLTFGG 60
Query: 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392
+ L SPD + S TDG V +L + + I
Sbjct: 61 GVSELRWSPDGSVLAFVS----------------------TDGGRVAQLYLVDVGGLITK 98
Query: 393 AFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEP--------V 443
V W D + AE D + + V
Sbjct: 99 TAFGVSD----ARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVV 154
Query: 444 QGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502
E I L L + D + P ++ I +
Sbjct: 155 DIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD-------ADPWVTNLYVLIEGNGE 207
Query: 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN--IPFLDLFDIN 560
E + GS IA + E+D G E L D
Sbjct: 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDT 267
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL------------------------ 596
G+ D + G L ++
Sbjct: 268 RGAWAVEGGLDGDGLLFIA-----TDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDG 322
Query: 597 -KILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSAT 655
K+ + S TE + Y+ +++ + ++ + E + Y+ DG +
Sbjct: 323 RKLALAYSSPTEPPEIYLYD-RGEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGW 381
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
LY PPG+DP K PL + + + G + QV S N + + + G+A+
Sbjct: 382 LYKPPGFDPRKKYPL--IVYIHGGP------SAQVGYSFNPEIQ-------VLASAGYAV 426
Query: 716 LGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772
L G G E A + + AAV+ +V+ + P +I + G SYG +M
Sbjct: 427 LAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYM 486
Query: 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT--------STYVEMSPFM 824
T P F +A +G + L R E Y + SP
Sbjct: 487 TLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIF 545
Query: 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884
A+ +K P+LL+HGEED+ Q+++ +ALK G LV+ P E HG++ E+ +
Sbjct: 546 YADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRV 603
Query: 885 HVLWETDRWLQKYC 898
VL E W +++
Sbjct: 604 KVLKEILDWFKRHL 617
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 21/206 (10%)
Query: 707 LWLARGF--AILGGPTTPIIGEGDEEANDRF-----VEQLVACAEAAVEEVVRRGVAHPS 759
L RG+ A+ G + G +A + +A AE + + G P
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQ----GYVDPD 64
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQ-NEDRTLWEA 813
++A+ G SYG ++T L P LF +A Y +PF + E W+
Sbjct: 65 RLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDN 124
Query: 814 TSTYVEMSP--FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871
Y +SP K P+LL+HG D+ ++ + AL+ G L+I P
Sbjct: 125 EEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDR--VPPAEALKLVAALQAKGKNVLLLIFP 182
Query: 872 FESHGYAARESIMHVLWETDRWLQKY 897
E HG + +L K
Sbjct: 183 DEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 709 LARGFAILGGPTTPIIGE-GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767
LA G+ +L P P G+ +E A A ++ + + + GHS
Sbjct: 21 LAAGYRVLA-PDLPGHGDSDGPPRTPYSLEDDAADLAALLDALGLG------PVVLVGHS 73
Query: 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA- 826
G + A P + S + L + + A
Sbjct: 74 LGGAVALAAAARRPERVAGLVLISPPLRD--LEELLAADAAALLALLRAALLDADLREAL 131
Query: 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+L P+L++HGE+D + R AL G LV+LP H
Sbjct: 132 ARLTVPVLVIHGEDDPLVPPEAAR--RLAEALPG----AELVVLPGAGH 174
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 39/190 (20%)
Query: 708 WLA-RGFAIL-------GGPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRGV 755
LA G+ +L G T I E E +++A +AA++ + R+
Sbjct: 49 RLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQ 108
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815
P +I V G G + AP + + A+ +G D T
Sbjct: 109 VDPKRIGVVGFCMGGGLALLAATRAP-----EVKAAVAF------YGGLIADDTA----- 152
Query: 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
A K+K P+LL ED D AL+ G L I P H
Sbjct: 153 ---------DAPKIKVPVLLHLAGED--PYIPAADVDALAAALEDAGVKVDLEIYPGAGH 201
Query: 876 GYAARESIMH 885
G+A + H
Sbjct: 202 GFANDRADYH 211
|
Length = 236 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 30/128 (23%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E V+ P +I + GHS G + L A
Sbjct: 43 APDAEAVLADAPLDPERIVLVGHSLGGGVALLLAA------------------------- 77
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
++ + KL P+L++HG D +++ AL G
Sbjct: 78 RDPRVKAAVVLAAGDPPDALDDLAKLTVPVLIIHGTRDG--VVPPEEAEALAAALPGP-- 133
Query: 864 LCRLVILP 871
LV++
Sbjct: 134 -AELVVIE 140
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
+EE+ S+I + G S GA + +L P LF I SG P
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML-----PLEP 138
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + PILL HG ED
Sbjct: 139 EL-------------------LPDLAGTPILLSHGTED 157
|
Length = 207 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703
Y G +L LY P Y P K P + + + AGQ GS N+
Sbjct: 166 YDESTGNELKYRLYTPKDYAPDKKY-YPLVLFLH--------GAGQ-GGSDNDKVLSSGI 215
Query: 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKI 761
+ W +L PI + +E+ L+ + +E + S+I
Sbjct: 216 GAIAWAGPEDQCFVLAPQYNPIFADSEEKTLLY----LIEKIDLILEVLASTYNIDRSRI 271
Query: 762 AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
V G S G F T L P F + +G +R
Sbjct: 272 YVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR 306
|
Length = 387 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 42/156 (26%)
Query: 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG------I 788
+E +V AA+ + + K+ V G FC G +
Sbjct: 74 RMEAVVDDLLAAINYLRGQPYVDTKKVGVVG------------------FCLGGRLAFLL 115
Query: 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
A + ++ +G E P A +K PIL GEED +
Sbjct: 116 AARNGVDAAVSFYGTGPE--------------PPLDEAPAIKAPILAHFGEEDP---FVP 158
Query: 849 MQS-DRFFNALKGHGALCRLVILPFESHGYAARESI 883
++ D AL+ L + P H +AA
Sbjct: 159 AEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 958 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.97 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.91 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.91 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.89 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK10566 | 249 | esterase; Provisional | 99.84 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.84 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.82 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.8 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.79 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.79 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.79 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.79 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.77 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.77 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.77 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.76 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.75 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.74 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.73 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.73 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.72 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.71 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.71 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.7 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.68 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.67 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.67 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.66 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.66 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.65 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.64 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.63 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.63 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.62 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.62 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.61 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.6 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.6 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.59 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.56 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.56 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.55 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.55 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.55 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.54 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.54 | |
| PLN02511 | 388 | hydrolase | 99.53 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.53 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.52 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.52 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.52 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.51 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.51 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.5 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.49 | |
| PLN00021 | 313 | chlorophyllase | 99.48 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.46 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.46 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.45 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.45 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.45 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.45 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.45 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.45 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.45 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.44 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.44 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.43 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.43 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.43 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.42 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.42 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.42 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.4 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.4 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.4 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.4 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.39 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.39 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.38 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.38 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.37 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.37 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.36 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.35 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.35 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.35 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.35 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.34 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.34 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.33 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.33 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.32 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.31 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.31 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.31 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.31 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.31 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.29 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.28 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.28 | |
| PLN02578 | 354 | hydrolase | 99.28 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.27 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.27 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.26 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.26 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.26 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.26 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.25 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.23 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.23 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.22 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.22 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.21 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.21 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.21 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.2 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.19 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.19 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.18 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.17 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.17 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.17 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.17 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.15 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.15 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.13 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.12 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.11 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.09 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.08 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.07 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.06 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.06 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.05 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.05 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.05 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.05 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.04 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.02 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.02 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.02 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.99 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.99 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.98 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.98 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.95 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.91 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.89 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.87 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.87 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.87 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.87 | |
| PTZ00421 | 493 | coronin; Provisional | 98.86 | |
| PTZ00421 | 493 | coronin; Provisional | 98.85 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.84 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.82 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.81 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.8 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.8 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.8 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.79 | |
| PTZ00420 | 568 | coronin; Provisional | 98.79 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.79 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.78 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.76 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.76 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.74 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.72 | |
| PTZ00420 | 568 | coronin; Provisional | 98.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.71 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.7 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.69 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.67 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.64 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.64 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.64 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.64 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.63 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.62 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.62 | |
| PRK10115 | 686 | protease 2; Provisional | 98.61 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.59 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.56 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.55 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.54 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.53 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.53 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.52 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.52 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.51 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.5 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.49 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.47 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.46 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.45 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.44 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.43 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.41 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.39 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.38 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.38 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.37 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.35 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.34 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.32 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.31 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.31 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.3 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.3 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.29 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.28 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.26 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.25 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.2 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.18 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.17 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.17 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.16 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.16 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.15 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.14 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.14 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.13 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.12 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.11 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.1 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.1 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.09 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.08 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.08 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.06 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.06 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.06 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.05 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.04 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.04 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.03 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.03 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.02 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.02 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.01 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.01 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.99 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.95 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.95 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.93 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.93 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.91 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.9 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.87 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.86 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.85 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.85 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.8 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.79 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.77 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.76 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.72 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.71 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.69 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.67 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.64 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.64 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.64 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.64 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.6 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.6 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.6 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.59 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.59 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.58 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.57 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.56 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.56 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.55 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.54 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.5 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.48 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.48 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.44 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.44 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.42 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.41 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.41 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.4 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.39 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.39 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.39 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.37 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.35 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.35 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.34 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.31 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.29 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.27 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.27 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.27 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.25 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.24 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.24 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.24 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.23 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.23 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.22 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.21 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.2 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.2 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.19 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.14 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.12 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.11 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.1 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.08 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.06 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.06 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.05 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 97.05 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 97.0 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 96.99 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.98 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 96.98 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 96.96 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.94 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 96.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.86 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 96.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.81 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 96.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 96.77 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.76 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.69 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.68 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 96.64 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.55 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.5 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.48 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.46 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.45 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.41 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.38 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.35 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.34 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.31 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.27 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.25 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 96.23 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.21 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 96.17 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.13 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 96.1 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 95.95 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 95.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 95.89 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 95.81 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.75 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 95.7 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.64 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.58 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.49 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 95.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.34 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 95.19 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.05 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 94.99 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 94.87 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 94.85 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.69 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 94.69 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.56 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 94.27 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 94.22 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 94.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.15 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.08 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 94.08 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 94.06 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 93.84 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 93.66 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.48 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 93.43 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 93.39 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 93.31 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 93.17 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.12 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 92.95 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.82 | |
| PLN02209 | 437 | serine carboxypeptidase | 92.65 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.59 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 92.56 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.56 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.52 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.48 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.46 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.35 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 92.25 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.13 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 92.06 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 92.02 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 91.65 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.65 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 91.59 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 91.5 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 91.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 91.23 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 91.06 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 91.06 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 90.79 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 90.57 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 90.52 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.44 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 90.42 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 90.35 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 90.27 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 90.09 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 89.95 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 89.85 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 89.78 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 89.54 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 89.38 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=419.67 Aligned_cols=599 Identities=18% Similarity=0.230 Sum_probs=390.1
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
..+++....+..+.++|+|+.++|.... ++....... +.+|+.+.. ..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~~~~ 55 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------TVRL 55 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------cccc
Confidence 4466667788899999999999999874 222222211 467775431 1112
Q ss_pred eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+.+..+..+.|||||+.++|... .+....++|+++.+ | .++..... +....|+|+|+.+++.
T Consensus 56 ---~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 56 ---LTFGGGVSELRWSPDGSVLAFVST-----DGGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ---cccCCcccccccCCCCCEEEEEec-----cCCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 224457899999999999999762 12336899999987 4 22221221 5688999999999984
Q ss_pred ecCCCCCCCCC-CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-cccccccc
Q 002164 262 IPLLRGDPPKK-PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~ 339 (958)
........... ...+....++. +.++ ....++|+++..+....+... ..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 175 (620)
T COG1506 119 TAEGASKRDGGDHLFVDRLPVWF-----------------DGRG------GERSDLYVVDIESKLIKLGLGNLDVVSFAT 175 (620)
T ss_pred ecccccccCCceeeeecccceee-----------------cCCC------CcccceEEEccCcccccccCCCCceeeeee
Confidence 22211110000 00000000000 0000 134678899884344444444 66677778
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++|++.++....... .........++....+....++..+ .+...+.|.+||+.+++....
T Consensus 176 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 176 DGDGRLVASIRLDDD------ADPWVTNLYVLIEGNGELESLTPGE-------------GSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred CCCCceeEEeeeccc------cCCceEeeEEEecCCCceEEEcCCC-------------ceeeeeeeCCCCCeeEEeccC
Confidence 877888877764432 0111223444433344444444332 224567889999988775332
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
.+. .. .....+++++. +.+.... ++... . . ..
T Consensus 237 ~~~-~~----~~~~~~~~~~~---~~~~~d~------------------------------------~~~~~--~-~-~~ 268 (620)
T COG1506 237 SDR-GL----AEGDFILLLDG---ELGEVDG------------------------------------DLSSG--D-D-TR 268 (620)
T ss_pred Ccc-Cc----cccceEEEEec---cccccce------------------------------------eeccC--C-c-cc
Confidence 211 00 11112222220 0000000 00000 0 0 00
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
. ... ..+.-++..++|..... .....++..+...+. ..+...+..
T Consensus 269 -~-~~~---------~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~~~~~~------ 313 (620)
T COG1506 269 -G-AWA---------VEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGLSGDDG------ 313 (620)
T ss_pred -C-cHH---------hccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeeecCCCc------
Confidence 0 000 00112333344443210 001112222222222 222222211
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecC-CCCCCCCCCCcEEEEEEEeCCCeEEEEEEEe
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF-PHPYPQLASLQKELIKYQRKDGVQLSATLYL 658 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~ 658 (958)
.-..|+.+++.+++..+++..|+++|+++. ++..+++.. +..+......++|.+++++.||.++++++++
T Consensus 314 -------~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~ 384 (620)
T COG1506 314 -------GVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYK 384 (620)
T ss_pred -------eEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEec
Confidence 012455689999999999999999999987 444555544 3444567778899999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhh
Q 002164 659 PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRF 735 (958)
Q Consensus 659 P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~ 735 (958)
|+++++.++ +|+||++||||..... .......+.|+++||+|+.++++|+.|||+++.. .++
T Consensus 385 P~~~~~~k~--yP~i~~~hGGP~~~~~-------------~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~ 449 (620)
T COG1506 385 PPGFDPRKK--YPLIVYIHGGPSAQVG-------------YSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDW 449 (620)
T ss_pred CCCCCCCCC--CCEEEEeCCCCccccc-------------cccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhcc
Confidence 999987765 9999999999843221 1122457789999999999999999999998764 355
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc---------
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE--------- 806 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~--------- 806 (958)
+...++|++++++++.+++.+|++||+|+|+||||+|+++++++.| +|+|+++..+.+++..........
T Consensus 450 g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (620)
T COG1506 450 GGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENG 528 (620)
T ss_pred CCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhC
Confidence 6678999999999999999999999999999999999999999996 899998888877755433222111
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
....+ +.+.|.+.||+.+++++++|+|||||++|.+|| .+|+++|+++|+..|+++++++||+++|++..+++....
T Consensus 529 ~~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~ 605 (620)
T COG1506 529 GGPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKV 605 (620)
T ss_pred CCccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHH
Confidence 11222 677899999999999999999999999999999 999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHhhcc
Q 002164 887 LWETDRWLQKYCVS 900 (958)
Q Consensus 887 ~~~i~~fl~~~l~~ 900 (958)
++++++||.+|++.
T Consensus 606 ~~~~~~~~~~~~~~ 619 (620)
T COG1506 606 LKEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=393.55 Aligned_cols=524 Identities=15% Similarity=0.094 Sum_probs=346.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....|||||++|+|..+.. +++..+|+++++++|+ ...+. .. -..++|++||+.|+|+......
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~----G~E~~~l~v~d~~tg~~l~~~i~---~~-----~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFL----SRRQYGIRFRNLETGNWYPELLD---NV-----EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCC----CcEEEEEEEEECCCCCCCCcccc---Cc-----ceEEEEeeCCCEEEEEEecCCC
Confidence 466688999999999998644 7788999999999886 23331 11 1258999999999988331100
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--eeeecCCC--cccc-ccccCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP--AVYT-SLDPSP 341 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--~~~~l~~~--~~~~-~~~~Sp 341 (958)
. ...++|+.++ ++ +.+.|... .... ....+.
T Consensus 196 ~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~ 232 (686)
T PRK10115 196 L-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT 232 (686)
T ss_pred C-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC
Confidence 0 1246999999 77 44555543 2121 223344
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
||+++++.+... ..+++++++.+-.
T Consensus 233 d~~~l~i~~~~~----------~~~~~~l~~~~~~--------------------------------------------- 257 (686)
T PRK10115 233 SKHYVVIHLASA----------TTSEVLLLDAELA--------------------------------------------- 257 (686)
T ss_pred CCCEEEEEEECC----------ccccEEEEECcCC---------------------------------------------
Confidence 888777555332 1234555543200
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
.+..+.+........ ......+..+++.++.+..+.+|..+++... .+.+.+...
T Consensus 258 -----------------------~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~ 312 (686)
T PRK10115 258 -----------------------DAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPP 312 (686)
T ss_pred -----------------------CCCceEEEECCCCCE-EEEEeCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECC
Confidence 000000000000000 0001112445555554444566777776532 222333322
Q ss_pred CC-ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeE
Q 002164 502 SS-EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (958)
Q Consensus 502 ~~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~ 580 (958)
.. ..+.+ +.++ +++|++.... ....+|+++++++++.+.|.-.... ..
T Consensus 313 ~~~~~i~~------~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~-----~~ 361 (686)
T PRK10115 313 RENIMLEG------FTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA-----YV 361 (686)
T ss_pred CCCCEEEE------EEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc-----eE
Confidence 11 11111 3344 4456655532 2345688999877777666522211 01
Q ss_pred eecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecC
Q 002164 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPP 660 (958)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~ 660 (958)
..++ .+..+++..+++..++...|.++|.+++.+++.++|+..+.+...-..+.++.+++++.||.+|++++++|+
T Consensus 362 ~~~~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~ 437 (686)
T PRK10115 362 TWIA----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHR 437 (686)
T ss_pred eeec----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEEC
Confidence 1111 122356788999999999999999999999988889976543222235688999999999999999766654
Q ss_pred CCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHH
Q 002164 661 GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVE 737 (958)
Q Consensus 661 ~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~ 737 (958)
+... .++.|+||++|||+..+..+ .| ....+.|+++||+|+.++.||+.|+|+.+... ....
T Consensus 438 ~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~ 502 (686)
T PRK10115 438 KHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKK 502 (686)
T ss_pred CCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCC
Confidence 4322 23579999999997543221 12 23356899999999999999999999987643 1223
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC------CC--cccccch
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP------FG--FQNEDRT 809 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~------~~--~~~~~~~ 809 (958)
..++|++++++||++++++|++|++++|.|+||+|+.+++.++|++|+|+|+..|++|+.... .. ...+.+.
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~ 582 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGN 582 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCC
Confidence 579999999999999999999999999999999999999999999999999999999865321 11 1122344
Q ss_pred hhhc--HHHHHhcCcccccCCCCCC-EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe---CCCCccCC-Cccc
Q 002164 810 LWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL---PFESHGYA-ARES 882 (958)
Q Consensus 810 ~~~~--~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~---p~~~H~~~-~~~~ 882 (958)
+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.+++++|+..+++++++++ +++||+.. ....
T Consensus 583 p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~ 660 (686)
T PRK10115 583 PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFK 660 (686)
T ss_pred CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHH
Confidence 5432 3445679999999999999 6778999999999 99999999999999999898888 99999842 1222
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 002164 883 IMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 883 ~~~~~~~i~~fl~~~l~~ 900 (958)
..+.....+.|+...+..
T Consensus 661 ~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 661 SYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 233444568888887754
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-30 Score=302.03 Aligned_cols=325 Identities=26% Similarity=0.296 Sum_probs=243.2
Q ss_pred CCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCce-EEEEECCCCC-eeEeecCC
Q 002164 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQ-YYIQSWPDKK-SCQITDFP 628 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~-~~~~d~~~g~-~~~Lt~~~ 628 (958)
..+||..++.++....++..... ...+.+ ..+++...+.+++.+.++..|.. +-+......+ ...|. .+
T Consensus 413 ~~~ly~i~~~~~~~~~lt~~~~~---~~~~~~-----~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~n 483 (755)
T KOG2100|consen 413 ERHLYSISLGSGTVESLTCSLIT---GPCTYL-----SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLE-TN 483 (755)
T ss_pred ceEEEEEEccccccccccccCCC---CcceEE-----EEecCCcccEEEEEccCCCCCcceeeccccccceEEEEec-cC
Confidence 45799999988877776654431 011111 24566677888888888887743 2222211111 22233 22
Q ss_pred CCCC----CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH
Q 002164 629 HPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS 704 (958)
Q Consensus 629 ~~~~----~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (958)
..+. .......+..++.. +|....+.+.+|+++++.+ ++|+||.+||||.. ........ ..+ .
T Consensus 484 ~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-q~v~~~~~--------~~~-~ 550 (755)
T KOG2100|consen 484 EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-QSVTSKFS--------VDW-N 550 (755)
T ss_pred hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-ceeeeeEE--------ecH-H
Confidence 2221 22222333334444 8999999999999998877 49999999999852 11111111 111 1
Q ss_pred HHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002164 705 VLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (958)
Q Consensus 705 ~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (958)
...+..+|++|+.+|++|..|+|..+. ..+.+..++.|+..++.++.+++++|.+||+|+|+|+||+|+++++.++|
T Consensus 551 ~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~ 630 (755)
T KOG2100|consen 551 EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDP 630 (755)
T ss_pred HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCc
Confidence 224567999999999999999998854 45666788999999999999999999999999999999999999999997
Q ss_pred -CceeEEEEeccCCCCCCCCCCccccc-chhhhcHHHHHhcCcccccCCCCCCE-EEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 782 -HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSANKLKKPI-LLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 782 -~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~~~~P~-Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
+.|+|+++++|++|+.+..-.+.... +.++++...|.+.++...++.++.|. |++||+.|.+|+ ++++.+++++|
T Consensus 631 ~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh--~q~s~~~~~aL 708 (755)
T KOG2100|consen 631 GDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH--FQQSAILIKAL 708 (755)
T ss_pred CceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--HHHHHHHHHHH
Confidence 78999999999999885444333332 44566666699999999999998877 999999999999 99999999999
Q ss_pred HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+|+++++++||+++|++.......+++..+..||..++.
T Consensus 709 ~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 709 QNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred HHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 99999999999999999998888888999999999996553
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=284.11 Aligned_cols=350 Identities=20% Similarity=0.225 Sum_probs=269.8
Q ss_pred CCceEEEEeee--ccCCCcEEEEccCCCCCCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCC
Q 002164 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (958)
Q Consensus 520 dG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (958)
.|+|-+-..++ .|+...-+|+.+..++|-.. +||+...+ .|+..+|+...-. . ...++.+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE~--hLyvvsye~~g~~~rlt~~g~s------h-------~~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLEH--HLYVVSYENPGEIARLTEPGYS------H-------SCELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCcee--eEEEEEEecCCceeeccCCCcc------c-------chhhhhhhh
Confidence 45555555544 56677778888888777554 79998887 8999999976521 0 122454555
Q ss_pred EEEEEEecCCCCceEEEEECCCCCeeEeecCC--------CCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCC
Q 002164 597 KILTSKESKTENTQYYIQSWPDKKSCQITDFP--------HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (958)
Q Consensus 597 ~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~--------~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~ 668 (958)
.++..+++-..|+.+.++.+.+++...|-... ...+.....+.|.+.+.+..|..++|.+|+|.+++++++
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 57777788888888777777665433322110 011122223347888898889999999999999999886
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEA 745 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~ 745 (958)
+|+|+++||||.. |+.. |.|.+.-......||++||+|+.+|.+|+.-.|..+. ...++..+++|..+
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999843 3333 4666665555668999999999977777765665543 24455667999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccccc-chhhhcHHHHHhcCcc
Q 002164 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPF 823 (958)
Q Consensus 746 av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~ 823 (958)
++++|.++ +++|.+||+|.|+||||+|+++.++++|+.|+++|+.+|+.+|.+++-++.... +.+-.+...|..-|..
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 599999999999999999999999999999999999999999888776665432 3444566677777777
Q ss_pred cccCCCC---CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 824 ~~~~~~~---~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.++.++. ..+|++||--|.+|. +.+..++..+|-++|++.++++||++.|.+...+....+-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7777774 459999999999999 9999999999999999999999999999998888888888889988875
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=252.39 Aligned_cols=302 Identities=20% Similarity=0.211 Sum_probs=220.9
Q ss_pred CCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCC
Q 002164 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH 629 (958)
Q Consensus 550 ~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~ 629 (958)
..++|++++..+++...|.-.+.. |... + ..+-..+...+++..+|.++|.++|-+|+.+++.++|.+..-
T Consensus 338 glp~v~v~~~~~~~~~~i~f~~~a-y~~~----l----~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV 408 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIAFDDEA-YSAG----L----SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEV 408 (682)
T ss_pred CCceEEEEecCCCceeeEEecchh-hhcc----c----cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccC
Confidence 356899999988877765433321 1111 1 112234677999999999999999999999999999997653
Q ss_pred CC-CCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH
Q 002164 630 PY-PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (958)
Q Consensus 630 ~~-~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (958)
+- .+...+.+++++.+..||++|+..|+.-+++ ..+++.|++|+.||.+..+.++ .|+ .....|
T Consensus 409 ~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p---------~Fs----~~~lSL 473 (682)
T COG1770 409 PGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDP---------SFS----IARLSL 473 (682)
T ss_pred CCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCc---------Ccc----cceeee
Confidence 32 2344577899999999999999999987763 3456799999999976554432 222 223468
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccch-hhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 002164 709 LARGFAILGGPTTPIIGEGDEEAND-RFV--EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~-~~~--~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (958)
+.+||+......||..-.|+.+... ... .+-+.|+++|+++|.++++.++++|+++|.|+||.+..+++.+.|++|+
T Consensus 474 lDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~ 553 (682)
T COG1770 474 LDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFA 553 (682)
T ss_pred ecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhh
Confidence 8999877665555443344443221 111 2458999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCC----cccccchhhhcH------HHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHH
Q 002164 786 CGIARSGAYNRTLTPFG----FQNEDRTLWEAT------STYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
++|+..|+.|...++.. +...+..-|.+| +.+..+||..++..-. +|+|++.|.+|++|. +++..++
T Consensus 554 ~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKW 631 (682)
T COG1770 554 GIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKW 631 (682)
T ss_pred heeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHH
Confidence 99999999874433211 111222234332 4456789999988754 578899999999999 9999999
Q ss_pred HHHHHhCCC---cEEEEEeCCCCccC
Q 002164 855 FNALKGHGA---LCRLVILPFESHGY 877 (958)
Q Consensus 855 ~~~l~~~g~---~~~~~~~p~~~H~~ 877 (958)
.++|+..+. ++-|.+-.++||+-
T Consensus 632 vAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 632 VAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHhhcccCCCcEEEEecccccCCC
Confidence 999998653 45566656889963
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=242.75 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=165.8
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
..+.|+++||+|+.++++++.|+|..+.. ..+....++|+.+++++|++++.+|++||+|+|+|+||++|+.++.++
T Consensus 6 ~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~ 85 (213)
T PF00326_consen 6 NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQH 85 (213)
T ss_dssp HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhccc
Confidence 46688999999999999999999887543 455678899999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccCCCCCCCCCC---ccc----ccchhhhcHHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCChHHH
Q 002164 781 PHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
|++|+++|+.+|+++....... +.. ....++...+.|...+|+..+.+ +++|+||+||++|.+|| +.++
T Consensus 86 ~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s 163 (213)
T PF00326_consen 86 PDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQS 163 (213)
T ss_dssp CCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THHH
T ss_pred ceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHHH
Confidence 9999999999999886543211 111 12334456778888899999988 89999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
.+++++|+..|+++++++||+++|.+...++..++..++++||+++|++
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988888889999999999999964
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=239.36 Aligned_cols=285 Identities=14% Similarity=0.117 Sum_probs=196.0
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
+.+.+-..-...+.++ |++|||+... .+.+.+... ..||+.+. || +..++
T Consensus 130 ~~D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~~ 179 (428)
T PRK01029 130 AADTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLRP 179 (428)
T ss_pred HHHHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCceE
Confidence 3444433344556666 9999999864 222322222 48999887 55 67788
Q ss_pred eccCCCCCcccceeecCCCCe--EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~--iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
||. ....+..|+|||||++ ++|++. .++..+||++++++|+.++++..+.. ...++|||||+.|+
T Consensus 180 lt~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~La 246 (428)
T PRK01029 180 LTQ--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLLA 246 (428)
T ss_pred ccc--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEEE
Confidence 875 2346789999999998 455654 44678999999999999999886664 34799999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE--EEc-C---CeeeecCCC--
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP-- 331 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~--~~~-~---g~~~~l~~~-- 331 (958)
|+.... +..++|+ +++ + |+.++++..
T Consensus 247 f~s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 247 FISDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCCC
Confidence 983210 1123444 344 3 466777754
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
.....++|||||++|+|++...+ ..++|+++++ ++..+.++... .....+.||||
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-------------~~~~~p~wSPD 337 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-------------RNSSCPAWSPD 337 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC-------------CCccceeECCC
Confidence 34578999999999999985421 2378888876 34566666532 12346889999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
|+.|+|.... .....|+++++ ++++.++++.....+..+.|||||+.|+|.....+. ..||.++++
T Consensus 338 G~~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~-~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE-SELYLISLI 403 (428)
T ss_pred CCEEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECC
Confidence 9999996322 12357999995 778888887666567789999999999998765443 689999998
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCC
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG 521 (958)
++ +...++..... ... ++|||-.
T Consensus 404 ~g--~~~~Lt~~~g~-~~~------p~Ws~~~ 426 (428)
T PRK01029 404 TK--KTRKIVIGSGE-KRF------PSWGAFP 426 (428)
T ss_pred CC--CEEEeecCCCc-ccC------ceecCCC
Confidence 85 44555543222 111 6788754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=229.26 Aligned_cols=228 Identities=15% Similarity=0.155 Sum_probs=172.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...++++. ....+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999988 44 55677764 2346889999999999999864 33467999999999999998866553
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+|+... + +..+||++++
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 2346999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....+.|||||++|+|++++.. ..+||+++++++..++++... ..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~-------------~~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888899876 56789999999999999986531 237889999988877776422 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... .....|+++++ +++..+.|+.. .....+.|||||+.|+|.+..++.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~- 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMG- 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 2467899999999985321 12346899985 67777778743 345679999999999999876543
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..|+++++++.
T Consensus 398 ~~l~~~~~~G~ 408 (429)
T PRK03629 398 SVLNLVSTDGR 408 (429)
T ss_pred eEEEEEECCCC
Confidence 67999999874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=231.28 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=173.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTD--GSSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEec--CCCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 48999987 44 56677874 3346899999999999999874 33468999999999999988866543
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999887210 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++|+.. .....+.|||||++|+|.+++.+ ..+|+++|++++..++++... ..
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~-------------~~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGG-------------GR 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCC-------------Cc
Confidence 8888999876 55678999999999999985432 238999999988888887532 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc-
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR- 479 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~- 479 (958)
...+.|||||+.|+|.... .....|+++++ +++..+.++.. ..+..+.|||||+.|+|.....+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~----------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQG----------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEcC----------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 3457899999999986321 12346889985 66666666543 456789999999999998865443
Q ss_pred -ceEEEEEcCCCC
Q 002164 480 -RTRTWVISPGSK 491 (958)
Q Consensus 480 -~~~l~~~~~~~~ 491 (958)
..+||+++++++
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 157999999885
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=226.86 Aligned_cols=265 Identities=17% Similarity=0.154 Sum_probs=184.8
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE--EEEecCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPPK 271 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l--~~~~~~~~~~~~~ 271 (958)
+..+ +++|||+....+...+....+||++|.+|+.+++||..... ..+|+|||||+.+ +|++..
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~------- 207 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYK------- 207 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEcc-------
Confidence 4455 89999998654333333467999999999999999986553 4589999999874 444110
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
. +..+||++++ +|+.++|+.. +....+.|||||++|+|+
T Consensus 208 -------------------------------~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 208 -------------------------------L--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred -------------------------------C--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 0 3468999999 8888888876 556689999999999999
Q ss_pred eecCCccccccCCCCCceeEE--EeccC---ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 350 SIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l--~d~~~---~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++..+ ..++++ |++++ +..++++.... .....+.|||||+.|+|..+.
T Consensus 249 s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~----- 301 (428)
T PRK01029 249 SDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK----- 301 (428)
T ss_pred ECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC-----
Confidence 85422 114555 45553 45566664321 112467899999999996432
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
++..+||+++++ ..++..+.++.....+..+.|||||++|+|....++ ..+||+++++++ +.+.++....
T Consensus 302 -----~g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~- 371 (428)
T PRK01029 302 -----DGRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPE- 371 (428)
T ss_pred -----CCCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCC-
Confidence 223468988751 124456777766556678999999999999976554 368999999885 4455543321
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
.... +.|||||++|+|.... .....||++|+++++.++|+...+
T Consensus 372 ~~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 372 NKES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred Cccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCCC
Confidence 1111 7799999999998631 123469999999999999986554
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=210.46 Aligned_cols=288 Identities=19% Similarity=0.206 Sum_probs=224.8
Q ss_pred ccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCc
Q 002164 591 LYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPL 670 (958)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~ 670 (958)
-+.+|..+++...+...|+.+|+.+..+++.+.+...... .+-..+.++.+..++.||++|+..++. ++.+.. +.
T Consensus 347 ~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~ 421 (648)
T COG1505 347 ADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-FDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---EN 421 (648)
T ss_pred CCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-cCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CC
Confidence 3457889999999999999999999999888888865432 234456788888999999999999998 664332 48
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av 747 (958)
|++|+.|||...+. .| .|. .....|.++|.+.+..+.||..-+|..+..... -.+.++|..+++
T Consensus 422 pTll~aYGGF~vsl--------tP-~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 422 PTLLYAYGGFNISL--------TP-RFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred ceEEEecccccccc--------CC-ccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 99999999863322 22 222 223789999998888788877777877553222 346799999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-----CCcccccchh--hhcHHHHHhc
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FGFQNEDRTL--WEATSTYVEM 820 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~ 820 (958)
+.|+++++..|+++++.|.|-||.++..++.+.|+.|.|+|+..|+.|+.-+. +.+..+.+.+ -++...+.++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~Y 568 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAY 568 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998854321 1122222222 2334567789
Q ss_pred CcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHh
Q 002164 821 SPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKY 897 (958)
Q Consensus 821 sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~-~~~~~~i~~fl~~~ 897 (958)
||+.+++.-+ .|+||..+.+|.+|. |.|+++|+.+|+..+.++-+.+--++||+-..+... ......++.||.+.
T Consensus 569 SPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~ 646 (648)
T COG1505 569 SPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRT 646 (648)
T ss_pred CchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHh
Confidence 9999988743 699999999999999 999999999999999988887777889987544332 34556678888887
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
|
T Consensus 647 L 647 (648)
T COG1505 647 L 647 (648)
T ss_pred h
Confidence 6
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=222.22 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=172.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCe-EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~-iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
.+||+.|. || ...++++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++++..++.
T Consensus 169 ~~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~- 234 (419)
T PRK04043 169 SNIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM- 234 (419)
T ss_pred ceEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc-
Confidence 37899887 55 55666653 23 6778999999997 666553 22356999999999999999875542
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+.|||||+.|+++... + +..+||++++
T Consensus 235 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl 264 (419)
T PRK04043 235 ----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDT 264 (419)
T ss_pred ----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEEC
Confidence 3468899999999987211 0 3467999999
Q ss_pred -CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+|+.++|+.. .....+.|||||++|+|++++.+ ..+|+++++++++.++++...
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g-------------- 320 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG-------------- 320 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC--------------
Confidence 8888999876 44568899999999999996532 248999999998888877521
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.....|||||+.|+|.....+.. . ......||++++ +++..+.|+... ....+.|||||+.|+|....++
T Consensus 321 -~~~~~~SPDG~~Ia~~~~~~~~~-~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~- 390 (419)
T PRK04043 321 -KNNSSVSTYKNYIVYSSRETNNE-F---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGN- 390 (419)
T ss_pred -CcCceECCCCCEEEEEEcCCCcc-c---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCC-
Confidence 11347999999999975432110 0 012357999995 778888887753 4457999999999999987644
Q ss_pred ceEEEEEcCCCC
Q 002164 480 RTRTWVISPGSK 491 (958)
Q Consensus 480 ~~~l~~~~~~~~ 491 (958)
...|+.+++++.
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 478999999884
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=199.94 Aligned_cols=370 Identities=16% Similarity=0.151 Sum_probs=225.1
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
+||.+++++ ++.++||. +-+.+..|.+||||++|||++-- ........+||+++.++|+++++|..+.. .
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f- 129 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F- 129 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c-
Confidence 899999976 77788875 33578999999999999995521 12234467999999999999999988532 1
Q ss_pred ccccceEEecCCeEEEEEec--------------CCCCCCCCCCCCCCCCc-----------------------------
Q 002164 244 AIFDNFVWVNNSTLLVCTIP--------------LLRGDPPKKPLVPLGPK----------------------------- 280 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~--------------~~~~~~~~~~~~~~~~~----------------------------- 280 (958)
..-..|+|||+.|+++-. ..+....+....|....
T Consensus 130 --T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGk 207 (668)
T COG4946 130 --TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGK 207 (668)
T ss_pred --ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccce
Confidence 234569999999998711 11111222222222211
Q ss_pred -eeeecCCcccccchhhhhccCchhh--------hHHHHhhcceEEEEEcCC-eeeecCCCccccccccCCCCcEEEEEe
Q 002164 281 -MQSNEKRDIIQVRTFQDLLKDEYDE--------DLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISS 350 (958)
Q Consensus 281 -~~~~~~~~~~~~r~~~d~~~~~~~~--------~~~~~~~~~~l~~~~~~g-~~~~l~~~~~~~~~~~SpDGk~l~~~~ 350 (958)
|.+.++++.... +.|+-.+-..+ -+.++.+.++||.+|++| .+++-|+...+..-..+.|||+|+|+.
T Consensus 208 lWis~d~g~tFeK--~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~ 285 (668)
T COG4946 208 LWISSDGGKTFEK--FVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN 285 (668)
T ss_pred EEEEecCCcceee--eeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec
Confidence 112222211000 00000000000 011233678899999955 677777764444455688999999997
Q ss_pred ecCCccccccCCCCCceeEEEeccCceEEEeccC-Ccc--ccCcccccccccCcceeeeec-CCCCceEEEEe-------
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLA--EDIPIAFNSVRKGMRSINWRS-DKPSTLYWAET------- 419 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~-~~~--~~~p~~~~~~~~~~~~~~~sp-DG~~l~~~~~~------- 419 (958)
.++||++|.++...+.|... |.. ..++...+.. ..... |++ +|..|++.+..
T Consensus 286 --------------~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps-kyled--fa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 286 --------------AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS-KYLED--FAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred --------------CCcEEEeCCCcCcceeeecCCccccccccccccCHH-Hhhhh--hccCCCcEEEEEecCcEEEECC
Confidence 34999999998877776543 433 1222211111 00000 111 23333332110
Q ss_pred --------------------ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 420 --------------------QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 420 --------------------~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.++.....-....+.|-+++. +|++.+.+...-+.+..+..|+||++++.+. .
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----d 421 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----D 421 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----C
Confidence 011100011112235667774 7778788877778888999999999988763 3
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
+.+||++|++++ . ..+.+.+...+..+ +.|+|+++|++|.... ++ -..+|.++|+
T Consensus 422 r~el~vididng--n-v~~idkS~~~lItd-----f~~~~nsr~iAYafP~-----gy------------~tq~Iklydm 476 (668)
T COG4946 422 RFELWVIDIDNG--N-VRLIDKSEYGLITD-----FDWHPNSRWIAYAFPE-----GY------------YTQSIKLYDM 476 (668)
T ss_pred ceEEEEEEecCC--C-eeEecccccceeEE-----EEEcCCceeEEEecCc-----ce------------eeeeEEEEec
Confidence 478999999996 3 33444444443322 8899999999999731 11 1236999999
Q ss_pred CCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCC
Q 002164 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTEN 608 (958)
Q Consensus 560 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p 608 (958)
++++...+|...+.+ -.++|.|||++|+|.....-.|
T Consensus 477 ~~~Kiy~vTT~ta~D------------fsPaFD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 477 DGGKIYDVTTPTAYD------------FSPAFDPDGRYLYFLSARSLDP 513 (668)
T ss_pred CCCeEEEecCCcccc------------cCcccCCCCcEEEEEeccccCC
Confidence 999999998766431 2478999999998876655444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=222.02 Aligned_cols=228 Identities=18% Similarity=0.175 Sum_probs=169.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...++++. ....+..|+|||||++|+|++. .++..+||++++.+|+.++++..+..
T Consensus 176 ~~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~-- 241 (427)
T PRK02889 176 YQLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS-- 241 (427)
T ss_pred cEEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 44 45566654 3346889999999999999874 34567899999999999888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 242 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 272 (427)
T PRK02889 242 ---NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNAD 272 (427)
T ss_pred ---ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999986211 0 3357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..++++.. .....+.|||||++|+|++++.. ..+||+++++++..++++... ..
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~~ 329 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------SY 329 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------CC
Confidence 7788888876 55678999999999999875421 237888888877777776321 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... +....|+++++ ++++.+.++... ....+.|||||+.|+|..+.++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~- 394 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGR- 394 (427)
T ss_pred cCceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCCC-
Confidence 2357899999999986322 12336899995 666777776543 34689999999999999887654
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..|+.+++++.
T Consensus 395 ~~l~~~~~~g~ 405 (427)
T PRK02889 395 SVLAAVSSDGR 405 (427)
T ss_pred EEEEEEECCCC
Confidence 78999999763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=220.74 Aligned_cols=228 Identities=18% Similarity=0.148 Sum_probs=170.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|++++. || ...+.++. ....+..|.|||||++|+|+.. .++..+||++++++|+.++++..+..
T Consensus 198 ~~l~i~d~--dG--~~~~~l~~--~~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~-- 263 (448)
T PRK04792 198 YQLMIADY--DG--YNEQMLLR--SPEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI-- 263 (448)
T ss_pred eEEEEEeC--CC--CCceEeec--CCCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC--
Confidence 37888886 44 55667764 2346889999999999999874 34567999999999998888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 264 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~ 294 (448)
T PRK04792 264 ---NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIA 294 (448)
T ss_pred ---cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECC
Confidence 3478999999999987211 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....+.|||||++|+|++.... ..+++++++++++.++|+... ..
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g-------------~~ 351 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEG-------------EQ 351 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCC-------------CC
Confidence 8888888876 55678999999999999985432 238999999988888776321 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... .....||++++ ++++.+.++... ....+.|||||+.|+|....++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~- 416 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGK- 416 (448)
T ss_pred CcCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCc-
Confidence 2346899999999985322 22346888985 677777776543 34578999999999999876653
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..||.++.++.
T Consensus 417 ~~l~~~~~~G~ 427 (448)
T PRK04792 417 QVLAAVSIDGR 427 (448)
T ss_pred eEEEEEECCCC
Confidence 67999998764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=222.07 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=171.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||++|. +| ...++|+. .+..+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILR--SAEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeec--CCCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 47999987 33 55677764 2346889999999999999864 33467899999999999888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~--------------------~--------------------------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR--------------------D--------------------------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC--------------------C--------------------------CCceEEEEECC
Confidence 4478999999999887210 0 2357999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.++++.. .....++|||||++|+|++++.+ ..++|+++++++..++++... ..
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g-------------~~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQG-------------NY 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888888876 45568999999999999985432 237999999888777776422 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|+|.... +....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ .
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~----------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~g-~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGS----------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREGG-R 402 (433)
T ss_pred ccCEEECCCCCEEEEEECC----------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 2357899999999996321 12337899995 667777776543 3567899999999999987654 3
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..||.++++++
T Consensus 403 ~~L~~~~~~g~ 413 (433)
T PRK04922 403 GVLAAVSTDGR 413 (433)
T ss_pred eEEEEEECCCC
Confidence 78999999874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=219.47 Aligned_cols=255 Identities=15% Similarity=0.155 Sum_probs=185.7
Q ss_pred CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002164 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
+.+|||+.... .......+||++|.+|+..+++|..... +..++|||||+.|+|+....
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~~-------------- 223 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYAN-------------- 223 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEecC--------------
Confidence 46899987532 0011267999999999999999876543 67899999999999982110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 224 --------------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 268 (435)
T PRK05137 224 --------------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG--- 268 (435)
T ss_pred --------------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---
Confidence 2357999999 8888888765 56678999999999999875421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+||++|++++..++|+..+.. ...+.|||||+.|+|..+. ....+||+
T Consensus 269 -------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 269 -------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred -------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 24799999999888888765422 2457899999999996432 22457999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (958)
+++ ++++.++++.....+..+.|||||++|+|.....+ ..+|++++++++ ....++... .... ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~~~------p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LVEG------PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CCCC------CeE
Confidence 995 77888888876666777999999999999875443 368999998764 333443321 1111 679
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
||||++|+|..... +. . ....||++|+++++.++|..
T Consensus 385 spDG~~i~~~~~~~------------~~--~-~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 385 APNGRVIMFFRQTP------------GS--G-GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCCCEEEEEEccC------------CC--C-CcceEEEEECCCCceEEccC
Confidence 99999999987321 00 0 02479999999888877753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=216.45 Aligned_cols=252 Identities=17% Similarity=0.178 Sum_probs=184.8
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
++|||+.... ++....+||++|.+|+..++++..... +..++|||||+.|+|++...
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~--------------- 220 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 220 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC---------------
Confidence 7899987632 123467999999999998999876543 56899999999999872110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 221 -------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---- 265 (429)
T PRK03629 221 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---- 265 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----
Confidence 2357999999 8888888765 55678999999999999864321
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+|++||++++..++++.... ....+.|||||+.|+|..+. ....+||++
T Consensus 266 ------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 266 ------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred ------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 2379999999888888876431 23568899999999996432 223479999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ ++++.++++........+.|||||++|+|....++. .+||+++++++ +.+.++... .+ .. ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~-~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDLATG--GVQVLTDTF-LD-----ET--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-ceEEEEECCCC--CeEEeCCCC-CC-----CC--ceEC
Confidence 85 677778886655556679999999999998765543 67999999875 444554321 11 11 6799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||++|+|.... +....|++++++++..++|...+
T Consensus 383 pDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~~~ 417 (429)
T PRK03629 383 PNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATD 417 (429)
T ss_pred CCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECccCC
Confidence 999999998742 11236999999888778776533
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-20 Score=197.25 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=209.8
Q ss_pred cCCEEEEEEecCCCCceEEEEECCCCCe--eEeecCCCCCC--CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCC
Q 002164 594 NQLKILTSKESKTENTQYYIQSWPDKKS--CQITDFPHPYP--QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGP 669 (958)
Q Consensus 594 dg~~l~~~~~s~~~p~~~~~~d~~~g~~--~~Lt~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~ 669 (958)
+.+.+.|...|+..|+.||.+|+..|+. ..+.+....++ .-..+.++.+.+++.||++++..++.-+.. +..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcCC
Confidence 4678999999999999999999998843 23333333333 344568999999999999999999985443 23456
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhH---HHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFV---EQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~---~~~~~D~~~a 746 (958)
.|++|+.||++..+.++.+... ...|..+|++....+.||..++|..+...... .+.++|.+++
T Consensus 470 ~P~LLygYGay~isl~p~f~~s-------------rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~ 536 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPSFRAS-------------RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIAC 536 (712)
T ss_pred CceEEEEecccceeeccccccc-------------eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHH
Confidence 8999999998755444322211 22467799988888888888888876543222 3569999999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC----CcccccchhhhcH---HHHHh
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEAT---STYVE 819 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~ 819 (958)
++||++++++.+++.++.|.|.||.++..++.++|++|+|+|+..|+.|...+.. ..+.....-|.++ +.+..
T Consensus 537 AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~ 616 (712)
T KOG2237|consen 537 AEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIK 616 (712)
T ss_pred HHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhhe
Confidence 9999999999999999999999999999999999999999999999988543211 1111111223333 33455
Q ss_pred cCcccccCCCC-----CCEEEEeeCCCCCCCCChHHHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCccc-HHHH
Q 002164 820 MSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMHV 886 (958)
Q Consensus 820 ~sp~~~~~~~~-----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~p~~~H~~~~~~~-~~~~ 886 (958)
++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..|+-+.+..++||+.-.... ..+-
T Consensus 617 i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E 694 (712)
T KOG2237|consen 617 ISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEE 694 (712)
T ss_pred ecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHH
Confidence 56655555553 357899999999998 99999999999874 246788889999998732211 2233
Q ss_pred HHHHHHHHHHhh
Q 002164 887 LWETDRWLQKYC 898 (958)
Q Consensus 887 ~~~i~~fl~~~l 898 (958)
....++||.+-+
T Consensus 695 ~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 695 AAFRYAFLAKML 706 (712)
T ss_pred HHHHHHHHHHHh
Confidence 344577777665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-23 Score=207.38 Aligned_cols=327 Identities=17% Similarity=0.192 Sum_probs=229.7
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002164 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (958)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (958)
.|..+|.+|+.++||. .++|++||+||+.+|.--+...|.+|+...+ .++..|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3889999999999999 8899999999999999989999998886554 67788998887
Q ss_pred CCcCCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC
Q 002164 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (958)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 172 (958)
.+.+....++.+-+.. +++.++|||+|++||..+.+ .+..||.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD---------------------------------~Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD---------------------------------STAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC---------------------------------ceEEEEEEec
Confidence 6666665555555544 79999999999999998876 3556676766
Q ss_pred CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe
Q 002164 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 173 dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (958)
|+...-.+.+-++ ...+....||||.++|+.+.. ...+++||+++|+.+.+.....+. .+.+++|-
T Consensus 256 d~~~kl~~tlvgh--~~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~~---S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGH--SQPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLGF---SVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeecc--cCceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcCC---CcceeEEc
Confidence 6543334445443 247899999999999998753 335999999999998887655211 16699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP- 331 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~- 331 (958)
|||..++..++ ..+++..+++|....--.+
T Consensus 322 pDg~~~V~Gs~-------------------------------------------------dr~i~~wdlDgn~~~~W~gv 352 (519)
T KOG0293|consen 322 PDGFRFVTGSP-------------------------------------------------DRTIIMWDLDGNILGNWEGV 352 (519)
T ss_pred cCCceeEecCC-------------------------------------------------CCcEEEecCCcchhhccccc
Confidence 99999886621 2346677776633111111
Q ss_pred --ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 --~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+..++.++||++++.+..+ ..+.+++..+...+.+... ...+.++..|.|
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d-------------~~i~l~~~e~~~dr~lise-------------~~~its~~iS~d 406 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVD-------------KKIRLYNREARVDRGLISE-------------EQPITSFSISKD 406 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecc-------------cceeeechhhhhhhccccc-------------cCceeEEEEcCC
Confidence 346788999999999888743 3788888775544422211 134577888888
Q ss_pred CCCceEEEEec------------------------------cCCC--cccccccCCeEEEEeCCCCCCCCceEEEeeccc
Q 002164 410 KPSTLYWAETQ------------------------------DGGD--AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR 457 (958)
Q Consensus 410 G~~l~~~~~~~------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~ 457 (958)
|+.+++..... .|++ .....+++++||+|+. ..|+-...|+.+...
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKT 484 (519)
T ss_pred CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcce
Confidence 88766432211 1111 1223456778999996 455556677777888
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+.-++|+|.....+.++.+++. .+||-.+
T Consensus 485 vNcVswNP~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence 8889999987765554444432 6677543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=216.18 Aligned_cols=227 Identities=14% Similarity=0.161 Sum_probs=169.8
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.|++++. +| +..++++. .+..+..|.|||||++|+|++. .++..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888877 44 55666753 3346789999999999999864 33567999999999999998765542
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~ 322 (958)
...++|||||+.|+|+.... +..+||++++ +
T Consensus 245 --~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECCC
Confidence 44799999999999872110 2357999999 8
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCc
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
|+.++++.. .....+.|||||++|+|+++..+ ..+|+++++++++.++++... ...
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NYN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CCc
Confidence 888888876 55678999999999999985432 237999999888777776421 112
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
..+.|||||+.|+|.... .....|+++++ ++++.+.|+... ....+.|||||+.|+|+++.++. .
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g~-~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQGR-G 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCCc-e
Confidence 357899999999986321 12336899995 677778887543 34578999999999999876654 7
Q ss_pred EEEEEcCCCC
Q 002164 482 RTWVISPGSK 491 (958)
Q Consensus 482 ~l~~~~~~~~ 491 (958)
+||.+++++.
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999774
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=208.87 Aligned_cols=250 Identities=15% Similarity=0.113 Sum_probs=181.1
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE-EEEEecCCCCCCCCCCCCCCCC
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL-LVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~-l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
.+|+|.... .+....+||++|.+|...++++... . ...+.|||||+. ++|++...
T Consensus 155 ~r~~~v~~~----~~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~-------------- 210 (419)
T PRK04043 155 KRKVVFSKY----TGPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGE-------------- 210 (419)
T ss_pred eeEEEEEEc----cCCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccC--------------
Confidence 466666531 1224689999999999888887653 2 458999999985 77662110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.++|+.. +....+.|||||++|+|+....+
T Consensus 211 --------------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g--- 255 (419)
T PRK04043 211 --------------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG--- 255 (419)
T ss_pred --------------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC---
Confidence 1357999999 9999999866 55567899999999999985421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+||+++++++..++|+..+..+ ..+.|||||++|+|..+. .+..+||+
T Consensus 256 -------~~~Iy~~dl~~g~~~~LT~~~~~d-------------~~p~~SPDG~~I~F~Sdr----------~g~~~Iy~ 305 (419)
T PRK04043 256 -------QPDIYLYDTNTKTLTQITNYPGID-------------VNGNFVEDDKRIVFVSDR----------LGYPNIFM 305 (419)
T ss_pred -------CcEEEEEECCCCcEEEcccCCCcc-------------CccEECCCCCEEEEEECC----------CCCceEEE
Confidence 348999999999899998765322 346799999999997543 23457999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc-----cceEEEEEcCCCCCCCcEEEeccCCccccCCCCC
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-----RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (958)
+++ ++++.++++.... ..+.|||||+.|+|...... ...+||+++++++ ..+.++.... . .
T Consensus 306 ~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-~-----~- 371 (419)
T PRK04043 306 KKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-N-----Q- 371 (419)
T ss_pred EEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC-c-----C-
Confidence 996 7788877865322 23699999999999986432 2268999999885 4556654321 1 1
Q ss_pred CceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
.++|||||+.|+|.... +....|+.+++++.+..+|....+
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeecCCC
Confidence 17799999999998732 223469999998877777765443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=211.67 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=158.7
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+||+++. || ...+.++.. ...+..|.|||||++|+|++. +++..+||++++.+|+.++++.....
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNRS--SQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEeccC--CCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 48999987 44 445666642 246899999999999999864 33567899999999988877655442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 0 2346999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+++.++++.. ..+..+.|||||++|+|++++.+ ..+||.++..++..+.++. .+
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~---------------~~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG---------------RG 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC---------------CC
Confidence 7888888876 66788999999999999985422 2267777776665555421 11
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
..+.|||||+.|++. . .+.++++|+ .+++.+.++.. .....+.|||||+.|+|.+..++.
T Consensus 336 -~~~~~SpDG~~ia~~-------------~-~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~- 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------N-GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG- 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------c-CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 246799999999884 1 245777885 56666666533 345679999999999999875543
Q ss_pred eEEEEEcCCC
Q 002164 481 TRTWVISPGS 490 (958)
Q Consensus 481 ~~l~~~~~~~ 490 (958)
..++.++.++
T Consensus 396 ~~l~~~~~~G 405 (429)
T PRK01742 396 KVLQLVSADG 405 (429)
T ss_pred eEEEEEECCC
Confidence 4466667666
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-20 Score=207.68 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=181.0
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+|+|+.... ......+||++|.+|...+.++..... +..+.|||||+.|+|+....
T Consensus 183 ~riayv~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~~--------------- 239 (448)
T PRK04792 183 TRIAYVVVND---KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFEN--------------- 239 (448)
T ss_pred CEEEEEEeeC---CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEecC---------------
Confidence 5788876422 122356899999999888888876653 56899999999999882110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 240 -------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---- 284 (448)
T PRK04792 240 -------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---- 284 (448)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----
Confidence 2357999999 8888888765 44568999999999999874421
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+|+++|+++++.++++.... ....+.|||||+.|+|..+. ....+||++
T Consensus 285 ------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~I~f~s~~----------~g~~~Iy~~ 335 (448)
T PRK04792 285 ------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKSLIFTSER----------GGKPQIYRV 335 (448)
T ss_pred ------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCEEEEEECC----------CCCceEEEE
Confidence 2479999999888888876432 12467899999999996432 234579999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ ++++.+.++........+.|||||++|+|.....+ ..+||+++++++ +...++.... + .. ++|+
T Consensus 336 dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g-~~~I~~~dl~~g--~~~~lt~~~~-d-----~~--ps~s 401 (448)
T PRK04792 336 NL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG-KFNIARQDLETG--AMQVLTSTRL-D-----ES--PSVA 401 (448)
T ss_pred EC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC-ceEEEEEECCCC--CeEEccCCCC-C-----CC--ceEC
Confidence 95 67777778644333456899999999999876543 368999999885 3444443211 1 12 5799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||++|+|.... .....|++++++++..+++....
T Consensus 402 pdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 402 PNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 999999998732 12336999999877777776543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=208.37 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=178.0
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+|+|+.. ..+..+||++|.+|...++++..... +..++|||||+.|+|++...
T Consensus 164 ~~iayv~~------~~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIK------TGNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEc------cCCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEccC---------------
Confidence 57999863 23467899999988888888765543 66899999999999982110
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 218 -------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---- 262 (427)
T PRK02889 218 -------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG---- 262 (427)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----
Confidence 2356999999 8888888755 55678999999999999864421
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+||++|++++..++|+..... ...+.|||||+.|+|..+. ....+||.+
T Consensus 263 ------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~l~f~s~~----------~g~~~Iy~~ 313 (427)
T PRK02889 263 ------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRSIYFTSDR----------GGAPQIYRM 313 (427)
T ss_pred ------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCEEEEEecC----------CCCcEEEEE
Confidence 23788889888888887764321 2457899999999985332 224478988
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
++ +++..++++........+.|||||++|+|.+..++. .+|+++++.++ +.+.++.... .. .++|+
T Consensus 314 ~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~-~~I~v~d~~~g--~~~~lt~~~~--~~------~p~~s 379 (427)
T PRK02889 314 PA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGA-FKLYVQDLATG--QVTALTDTTR--DE------SPSFA 379 (427)
T ss_pred EC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccCCc-EEEEEEECCCC--CeEEccCCCC--cc------CceEC
Confidence 85 666777776444444578999999999998765543 57999998875 3344443211 11 16799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
|||+.|+|.... +....|++++++++..+++....
T Consensus 380 pdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~ 414 (427)
T PRK02889 380 PNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRLSVQG 414 (427)
T ss_pred CCCCEEEEEEec------------------CCCEEEEEEECCCCceEEeecCC
Confidence 999999998742 12346899999766666665443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-20 Score=209.14 Aligned_cols=254 Identities=16% Similarity=0.142 Sum_probs=182.9
Q ss_pred CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002164 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (958)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (958)
+.+|+|+.... ..+....+||++|.+++..++++..... +..++|||||+.|+|+....
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~~-------------- 225 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFER-------------- 225 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecCC--------------
Confidence 46799987532 1223456899999999888999876543 66899999999999882110
Q ss_pred ceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
+..+||++++ +|+.+.++.. +....+.|||||++|+|+....+
T Consensus 226 --------------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 226 --------------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 2357999999 8888888765 55568899999999999864421
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
..+|+++|++++..++++..... ...+.|||||+.|+|..+. ....+||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 24899999998888887754311 2467899999999996332 22347999
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (958)
+++ ++++.++++........+.|||||++|+|....++ ..+|++++++++ +.+.++.... . . . ++|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~~g--~~~~Lt~~~~-~-~----~--p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLSTG--SVRTLTPGSL-D-E----S--PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECCCC--CeEECCCCCC-C-C----C--ceE
Confidence 985 66777777654444557999999999999875433 368999998875 3445543321 1 1 1 679
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
||||++|+|.... .....||+++++++..+++....
T Consensus 387 spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 387 APNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEEcccCC
Confidence 9999999998742 12347999999888777776544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=206.60 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=182.4
Q ss_pred CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002164 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (958)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (958)
-.++|+|+.... ...++..+||++|.+|+..++++..... +..++|||||+.|+|+....
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~~------------- 220 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFEQ------------- 220 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcCC-------------
Confidence 346899986532 1123456899999999888888765543 56899999999999872110
Q ss_pred CceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002164 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (958)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 356 (958)
+..+||++++ +|+.++++.. +....+.|||||++|+|+....+
T Consensus 221 ---------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 221 ---------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred ---------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 2357999999 8888888765 55567999999999999875422
Q ss_pred ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEE
Q 002164 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (958)
Q Consensus 357 ~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (958)
..+|+++|++++..++|+.... ....+.|||||+.|+|..+. .+..+||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~-------------~~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPA-------------IDTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCC-------------CcCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 2489999999988888876432 12457899999999996332 2345799
Q ss_pred EEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceE
Q 002164 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (958)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (958)
++++ ++++.++++........+.|||||++|+|....++ ..+||+++++++ +.+.++... .+ .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~-~~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTS-LD-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCC-CC-----CC--ce
Confidence 9985 66777777644444456899999999999876544 367999999885 445554331 11 11 57
Q ss_pred eccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
|||||++|+|.... .....|++++++++..+++...
T Consensus 381 ~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 381 VAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCC
Confidence 99999999998742 1234699999987766666543
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=188.68 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=146.2
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~ 730 (958)
.+....|.|.+. .+++.|+||++||.+.. ... ....+..|+++||.|++++++ |+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTSS-----------KLV----YSYFAVALAQAGFRVIMPDAP---MHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCcc-----------cch----HHHHHHHHHhCCCEEEEecCC---cccccC
Confidence 455567778641 12358999999996321 011 124567888999999995554 554431
Q ss_pred cc------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc--CCCC---
Q 002164 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (958)
Q Consensus 731 ~~------~~---~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~~~--- 796 (958)
.. .. ......+|+.++++++.+++.+|+++|+++|||+||++++.++.+.|+. ++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV-KCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe-eEEEEeeCcHHHHHHHH
Confidence 11 11 1234567888999999998889999999999999999999999998764 44433322 1110
Q ss_pred -CCCCCCcccc--cchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEe
Q 002164 797 -TLTPFGFQNE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVIL 870 (958)
Q Consensus 797 -~~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~ 870 (958)
...+...... ..........+..+++...+.++ ++|+|++||++|.+|| +.++++++++++..|.+ +++++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 0000000000 00011111223344555556666 6899999999999999 99999999999998864 789999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 871 p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
++++|.+. ...+..+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999975 346789999999875
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=179.85 Aligned_cols=233 Identities=14% Similarity=0.149 Sum_probs=171.3
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCC-CcCcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~G~~vl~ 717 (958)
...-.+++.+|.++....|+|.+- ..+..+|+++||... .. ......+..|+..||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~---------------~~s~~~~~~a~~l~~~g~~v~a 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE---------------HSSWRYQSTAKRLAKSGFAVYA 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc---------------cchhhHHHHHHHHHhCCCeEEE
Confidence 344567888999999999999652 235789999999421 11 1223467789999999999
Q ss_pred cCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 718 GPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
+|..|+|.+.+...+ +...++|+...++.++.+..--....+++||||||.+++.++.++|+.+.++|.++|.+
T Consensus 88 ---~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc 164 (313)
T KOG1455|consen 88 ---IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMC 164 (313)
T ss_pred ---eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeeccc
Confidence 777788888764433 56789999999999888755444589999999999999999999999999999999865
Q ss_pred CCCC-------------------CCCCccccc-------chhhh------cH-------------HHHH-hcCcccccCC
Q 002164 795 NRTL-------------------TPFGFQNED-------RTLWE------AT-------------STYV-EMSPFMSANK 828 (958)
Q Consensus 795 ~~~~-------------------~~~~~~~~~-------~~~~~------~~-------------~~~~-~~sp~~~~~~ 828 (958)
-... ..|...... +.++. ++ +.+. ..+...++.+
T Consensus 165 ~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~ 244 (313)
T KOG1455|consen 165 KISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNE 244 (313)
T ss_pred ccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhccc
Confidence 3110 011100000 11110 10 0000 1123456778
Q ss_pred CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHh
Q 002164 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (958)
++.|+||+||++|.++. +..+++||+..... ++++.+|||+-|.+. ..++.+.++..|++||+++
T Consensus 245 vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 245 VTVPFLILHGTDDKVTD--PKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred ccccEEEEecCCCcccC--cHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 89999999999999988 89999999988765 578889999999976 4677889999999999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=193.45 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=167.3
Q ss_pred CCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC
Q 002164 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (958)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (958)
.+..++.+...++..||.++++..+.|.+. ..+.|+||++||.... ..+ .....+..|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 444456666778888999999999988641 1247899999995311 011 1123355688899
Q ss_pred cEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
|.|++ +|.+|+|.+.... .......+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 6677888775322 23567789999999999876444456899999999999999999999999999999
Q ss_pred eccCCCCCCC---CCCc-----------cc----ccchhh------hcHHHHHhcCc----------------------c
Q 002164 790 RSGAYNRTLT---PFGF-----------QN----EDRTLW------EATSTYVEMSP----------------------F 823 (958)
Q Consensus 790 ~~~~~~~~~~---~~~~-----------~~----~~~~~~------~~~~~~~~~sp----------------------~ 823 (958)
.++....... .+.. .. ...... .....+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 0000 00 000000 00000001111 2
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC--c-ccHHHHHHHHHHHHHHhhcc
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--R-ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~--~-~~~~~~~~~i~~fl~~~l~~ 900 (958)
..+.++++|+||+||++|..+| ++.+++++++++.. .++++++++++|.+.. + .....+...+.+||.+++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 3356788999999999999999 99999999887643 3688899999999743 2 22356788899999999754
Q ss_pred C
Q 002164 901 N 901 (958)
Q Consensus 901 ~ 901 (958)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 4
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=200.64 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=160.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|||++.+ .+ . ..||+|++.+ +..+.++... .
T Consensus 205 ~v~~p~wSPDG~~la~~s~~----------------------~~--~------~~i~i~dl~t----g~~~~l~~~~--g 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE----------------------NK--K------SQLVVHDLRS----GARKVVASFR--G 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec----------------------CC--C------cEEEEEeCCC----CceEEEecCC--C
Confidence 46789999999999998763 10 1 3799999854 5555665443 2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++|||||++|+|+.. .++..+||++++++++.++++..... ...+.|+|||+.|+|++...
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~~~---- 313 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSDRS---- 313 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEECCC----
Confidence 3567999999999999763 34567899999999999999865442 55899999999999872110
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
+..+||.++. ++..+.++... ..+.|||||++|++
T Consensus 314 ------------------------------------------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 314 ------------------------------------------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred ------------------------------------------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 2357999998 66666663323 46789999999999
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
.... .+++||+.++..+.++... . ...+.|+|||+.|++....
T Consensus 350 ~~~~--------------~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~~--------- 392 (429)
T PRK01742 350 INGD--------------NVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSSTQ--------- 392 (429)
T ss_pred EcCC--------------CEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEcC---------
Confidence 8632 6888999887766665321 1 1357899999999986321
Q ss_pred cccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
+....+++++. +|+..++|...++.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 22334666664 78788888777777888999984
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=182.98 Aligned_cols=208 Identities=12% Similarity=0.043 Sum_probs=145.3
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
...+...||..|.+|+..|++.. ..+.++||++||-... . .....++..|+++||+|+.
T Consensus 11 ~~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~~------------~---~~~~~~A~~La~~G~~vLr--- 69 (307)
T PRK13604 11 DHVICLENGQSIRVWETLPKENS---PKKNNTILIASGFARR------------M---DHFAGLAEYLSSNGFHVIR--- 69 (307)
T ss_pred hheEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCCC------------h---HHHHHHHHHHHHCCCEEEE---
Confidence 33567789999999999997522 2347899999994210 0 1134567889999999999
Q ss_pred CCCCCC-CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 721 TPIIGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 721 ~~~~G~-G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
+|++|. |.|.+.. ........|+.++++|++++. .++|+|+||||||.+++.+|... .++++|+.+|+.+..
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 555554 5553321 112345799999999998863 46899999999999987766644 399999999987722
Q ss_pred C-------C-----CCCcc-c----ccc-----hhhhcHHH---HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 798 L-------T-----PFGFQ-N----EDR-----TLWEATST---YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 798 ~-------~-----~~~~~-~----~~~-----~~~~~~~~---~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
. . ++... . ... .+...... ....+|+..+.+++.|+|++||++|..|| +++++
T Consensus 145 d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~ 222 (307)
T PRK13604 145 DTLERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVI 222 (307)
T ss_pred HHHHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHH
Confidence 0 0 00000 0 000 01111000 11245567788899999999999999999 99999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+++++++. .+++++++||++|.+.
T Consensus 223 ~l~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 223 DLLDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHHHhcc--CCcEEEEeCCCccccC
Confidence 99998764 3689999999999984
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-19 Score=186.76 Aligned_cols=232 Identities=19% Similarity=0.172 Sum_probs=154.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
.......++|++.+|..|.|++++|++. ++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 3456778999999999999999999842 3569999999995311 0111223468999999
Q ss_pred EEEcCCCCCCCCCCc------------------c-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 715 ILGGPTTPIIGEGDE------------------E-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 715 vl~~~~~~~~G~G~~------------------~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
|+.++.+|..|.... . ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 999666655431100 1 112345567899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCC-----CC--CCcccccchh-----------hhcHHHHHhcCcccccCCCCCCEEEEe
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTL-----TP--FGFQNEDRTL-----------WEATSTYVEMSPFMSANKLKKPILLVH 837 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~-----~~--~~~~~~~~~~-----------~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (958)
+|+.+ ++|+++++..|.+.... .. ..+ .+.... -+-.+.+..++..+.+++|++|+|+..
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y-~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~ 269 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPY-PEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSV 269 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTT-HHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccH-HHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEE
Confidence 99999 56999999888643110 00 000 000000 011234556778888999999999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|-.|..|| +.-....|+++.. ++++.+||..+|.... ....++.++||.+|
T Consensus 270 gl~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 270 GLQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp ETT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred ecCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 99999998 9988888888865 5899999999998742 22256678998775
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=191.95 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=154.5
Q ss_pred CCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 636 ~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
....+.++|+..+|..+++++++|+. .++.|+||+.||.. +.. .......+..|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988766631 000 001123456789999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
++ +|.+|+|.+.... ..........+++++|.+.+.+|.+||+++|+|+||++++.++...|++++++|+.+|+++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556777663321 1112222335789999999999999999999999999999999999889999999998865
Q ss_pred CCCCCCCcccc------------cchhhhcHHH----HHhcCcc--c-ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 796 RTLTPFGFQNE------------DRTLWEATST----YVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~~----~~~~sp~--~-~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
........... .+......+. +..++.. . ...++++|+|++||++|.++| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 0000001111 1111211 1 125688999999999999999 888887765
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
... ..+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 543 3588899986 433 356788999999999876
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=180.84 Aligned_cols=237 Identities=16% Similarity=0.200 Sum_probs=150.1
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH-HHCCcEEE
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAIL 716 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~vl 716 (958)
.+.+++.+. -+..+.+.+|+|+++... ++|+|+++||.+... ..+.. ......+ ++.||.|+
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~Vv 76 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLALV 76 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEEE
Confidence 445555543 567888999999875332 489999999964211 11110 0112344 45799999
Q ss_pred EcCCCCCCCCCCc-------------cc----chhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 717 GGPTTPIIGEGDE-------------EA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 717 ~~~~~~~~G~G~~-------------~~----~~~~--~~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
+++.. .+|.|.+ +. .... .......+.+.+.. +.++..+|+++++|+|+||||++|+.+
T Consensus 77 ~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~ 155 (275)
T TIGR02821 77 APDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVI 155 (275)
T ss_pred EeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHH
Confidence 97762 2232211 00 0000 00112222222333 333344788999999999999999999
Q ss_pred HHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCCh-HHHHH
Q 002164 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSDR 853 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~-~~~~~ 853 (958)
+.++|++|+++++.+|+++.....+........+..+.+.+...+|...+.+ ...|+|+.||+.|..++ . .+...
T Consensus 156 a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~ 233 (275)
T TIGR02821 156 ALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDA 233 (275)
T ss_pred HHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHH
Confidence 9999999999999999877543222110001111112222334455444332 45799999999999998 7 57889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+.++|+..|+++++..+||++|.+.. ....+...++|+.++
T Consensus 234 ~~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 234 FEQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhh
Confidence 99999999999999999999999842 345566777777664
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=177.99 Aligned_cols=201 Identities=22% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC--CCCc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G--~G~~ 729 (958)
+.+++..|++- ++.|.||++|+.. ++.......+..|+++||.|+++|.++..+ ....
T Consensus 1 ~~ay~~~P~~~-----~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEGG-----GPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETTS-----SSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCCC-----CCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 46899999762 4589999999842 111222345778999999999999876655 1111
Q ss_pred ccc-hh-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC
Q 002164 730 EAN-DR-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 730 ~~~-~~-------~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (958)
... .. .......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 100 11 1235578899999999999888899999999999999999998887 67999999877100
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR- 880 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~- 880 (958)
...+.....++++|+|+++|++|+.++ .+...++.++|+..+.++++.+|||++|+|...
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 001223345678999999999999998 888899999999999999999999999998643
Q ss_pred ------ccHHHHHHHHHHHHHHhh
Q 002164 881 ------ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 881 ------~~~~~~~~~i~~fl~~~l 898 (958)
....+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 234577888999999886
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=188.81 Aligned_cols=228 Identities=18% Similarity=0.201 Sum_probs=165.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..||+++. +| ...++|+.. +..+..|.|||||++|+|+.. .++..+||++++++|+.++++.....
T Consensus 170 ~~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~-- 235 (417)
T TIGR02800 170 YELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM-- 235 (417)
T ss_pred ceEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 33 556777642 235788999999999999864 23457899999999988777654432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|||+.|+++.... +..+||.+++
T Consensus 236 ---~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d~~ 266 (417)
T TIGR02800 236 ---NGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMDLD 266 (417)
T ss_pred ---ccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEECC
Confidence 44789999999998872100 2356999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..+.++.. .....+.|+|||++|+|.+.+.. ..+|++++++++..++++... ..
T Consensus 267 ~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~ 323 (417)
T TIGR02800 267 GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GY 323 (417)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 7888888766 44567899999999999985432 237999999887777766422 12
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|++.... .....|+++++ +++..+.++.. .....+.|+|||+.|+|....++.
T Consensus 324 ~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~- 388 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGR- 388 (417)
T ss_pred ccCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCc-
Confidence 3467899999999885321 12447899985 55566656543 345678999999999999886654
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..+++++.++.
T Consensus 389 ~~l~~~~~~g~ 399 (417)
T TIGR02800 389 GVLGLVSTDGR 399 (417)
T ss_pred EEEEEEECCCc
Confidence 67888887763
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-18 Score=186.34 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=159.3
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
++..+.+.+|.++.+..+.|.+ ..+.|+||++||..... . .+....+..|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~~------------~--~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDTC------------T--FFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCcc------------c--hHHHHHHHHHHhCCCEEEE--
Confidence 3445566799999999999864 12468999999953110 0 0012345578889999999
Q ss_pred CCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
.|.+|+|.+.... ..+...+.|+.+.++++..+...+..+++|+||||||.+++.++.++|++++++|+++|....
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 6667888775432 234677888999888887654455668999999999999999999999999999999886431
Q ss_pred CC---CCC----------------Ccc-c-c-cchhhhcH-----------------------HHHHh-cCcccccCCCC
Q 002164 797 TL---TPF----------------GFQ-N-E-DRTLWEAT-----------------------STYVE-MSPFMSANKLK 830 (958)
Q Consensus 797 ~~---~~~----------------~~~-~-~-~~~~~~~~-----------------------~~~~~-~sp~~~~~~~~ 830 (958)
.. .+. ... . . ....+.+. +.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 000 000 0 0 00000000 00000 01123456789
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc---HHHHHHHHHHHHHHhhc
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYCV 899 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~---~~~~~~~i~~fl~~~l~ 899 (958)
+|+||+||++|..+| +..++++++.+... .++++++|+++|.+...+. ...++..|.+||++++.
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999999998 89999998877543 3688899999999753221 34588899999998863
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=180.41 Aligned_cols=239 Identities=21% Similarity=0.229 Sum_probs=149.8
Q ss_pred cEEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
..+.+++.+ .-|..+...+|+|+.. ++ .++|+|+++||+.... ..+... ....+.++..||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-DS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-cC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEEE
Confidence 455566655 3567899999999842 22 3599999999964211 111110 112345567899999
Q ss_pred EcCCCCC--C----------CCCCccc----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 717 GGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 717 ~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.++.... . |+|.+.. . ..+.....+++...++... ..+|+++++|+|+||||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~ 159 (283)
T PLN02442 82 APDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALT 159 (283)
T ss_pred ecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHH
Confidence 9765311 0 1111100 0 0112223444444443322 2368899999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhc---CcccccCCCCCCEEEEeeCCCCCCCCChH-HH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM---SPFMSANKLKKPILLVHGEEDNNSGTLTM-QS 851 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~ 851 (958)
++.++|++|+++++.+|+++.....+........+....+.+.++ +++..+.+.++|+|++||++|..++ .. ++
T Consensus 160 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~s 237 (283)
T PLN02442 160 IYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLLP 237 (283)
T ss_pred HHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--ccccH
Confidence 999999999999999999875422221110011111112233334 4444555678999999999999987 53 57
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.++++++..|.++++.++|+++|.+. ....++.+.+.|..+++
T Consensus 238 ~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 238 ENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999863 23333444445555444
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=178.79 Aligned_cols=223 Identities=17% Similarity=0.127 Sum_probs=154.9
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+.+.||..+.+.+|.|.. .+.|+|+++||.... .......+..|+++||.|++ .|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 345699999999998842 236899999995321 11223456778889999999 667
Q ss_pred CCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
+|+|.+.... ..+...++|+..+++++.+.. ...+++++|||+||.+|+.++.+.|++++++|+.+|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888775421 234556788888888876652 23589999999999999999999999999999999865421100
Q ss_pred C-----------Ccccc----cchhh--hc---HHHH-------------------Hh-c-CcccccCCCCCCEEEEeeC
Q 002164 801 F-----------GFQNE----DRTLW--EA---TSTY-------------------VE-M-SPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 801 ~-----------~~~~~----~~~~~--~~---~~~~-------------------~~-~-sp~~~~~~~~~P~Lii~G~ 839 (958)
. .+... ....+ .. ...+ .. . .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 00 0000 00 0 1123456789999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHHHh
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQKY 897 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~--~~~~~~~~i~~fl~~~ 897 (958)
+|..+| +..+.++++.++. .+++.++++++|.+.... ...++++.+.+||+.+
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 8999998887644 479999999999986543 3678999999999886
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=183.87 Aligned_cols=322 Identities=19% Similarity=0.218 Sum_probs=198.2
Q ss_pred cCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceee
Q 002164 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (958)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w 196 (958)
||||++++|..+. ....|-++...+||+++++ +..++|+.. ......+.|
T Consensus 1 S~d~~~~l~~~~~------------------------~~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY------------------------TKQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE------------------------EEESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc------------------------EEeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999997762 1122334456899999976 666666532 247899999
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-cc------------cccceEEecCCeEEEEEec
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-NA------------IFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-~~------------~~~~~~wspDG~~l~~~~~ 263 (958)
||||++|||+. +.+||+.+..+++.++||..+...+ ++ .-..+-|||||+.|+|...
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 5699999999999999998663221 11 1236779999999999965
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC------C-cccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP------P-AVYT 335 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~------~-~~~~ 335 (958)
+.+....- ..+........+. + ......+.-+ +-.....|+++++ +|+...+.. . ..+.
T Consensus 121 d~~~v~~~-------~~~~~~~~~~~yp-~--~~~~~YPk~G---~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 121 DEREVPEY-------PLPDYSPPDSQYP-E--VESIRYPKAG---DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp E-TTS-EE-------EEEEESSSTESS--E--EEEEE--BTT---S---EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCcCCceE-------EeeccCCccccCC-c--ccccccCCCC---CcCCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 54443100 0000000000000 0 0000000000 0003456999999 776544332 1 4567
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee-cCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG~~l~ 414 (958)
.+.|++|++.|++....+.. ....+.++|..++..+.+... ..+.|.+ ....+.|. +||..++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q--------~~~~l~~~d~~tg~~~~~~~e----~~~~Wv~----~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQ--------NRLDLVLCDASTGETRVVLEE----TSDGWVD----VYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EEEEEETTEEEEEEEEETTS--------TEEEEEEEEECTTTCEEEEEE----ESSSSSS----SSSEEEE-TTTSSEEE
T ss_pred cceecCCCcEEEEEEcccCC--------CEEEEEEEECCCCceeEEEEe----cCCccee----eecccccccCCCCEEE
Confidence 89999999977776644321 123677778876655554421 1122221 12355665 8999988
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCc-eeeecCCceEEEEEeccc-cceEEEEEcCC-CC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRTRTWVISPG-SK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~~l~~~~~~-~~ 491 (958)
+..+ . ++..+||+++. +++..++|+.+++.+.. +.|+++++.|+|.+..++ ...+||+++++ +
T Consensus 252 ~~s~-~---------~G~~hly~~~~---~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~- 317 (353)
T PF00930_consen 252 WISE-R---------DGYRHLYLYDL---DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG- 317 (353)
T ss_dssp EEEE-T---------TSSEEEEEEET---TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-
T ss_pred EEEE-c---------CCCcEEEEEcc---cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-
Confidence 8766 3 34778999995 78888899999998854 789999999999987644 56899999999 5
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++.+.++...... +. ++|||||++++....
T Consensus 318 -~~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 318 -GEPKCLTCEDGDH-YS------ASFSPDGKYYVDTYS 347 (353)
T ss_dssp -TEEEESSTTSSTT-EE------EEE-TTSSEEEEEEE
T ss_pred -CCeEeccCCCCCc-eE------EEECCCCCEEEEEEc
Confidence 4566666544332 22 789999999988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=159.81 Aligned_cols=238 Identities=17% Similarity=0.187 Sum_probs=173.1
Q ss_pred CCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH
Q 002164 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (958)
-+.|....++-+++++.+.|.+++++++.+-+. ..|+++++||.... +. + .-......+
T Consensus 44 vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------mG-----h--r~~i~~~fy 102 (300)
T KOG4391|consen 44 VPTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------MG-----H--RLPIARVFY 102 (300)
T ss_pred CCCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------cc-----c--hhhHHHHHH
Confidence 345667778889999999999999999998322 37999999995311 11 1 011112245
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.+.+..|+. ..++|||.+.+... -.....|..++++||..++..|..+++++|.|.||..|+.+|++..+++.|+|
T Consensus 103 ~~l~mnv~i---vsYRGYG~S~Gsps-E~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLI---VSYRGYGKSEGSPS-EEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEE---EEeeccccCCCCcc-ccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 667999999 55568998876432 24567789999999999999999999999999999999999999989999999
Q ss_pred EeccCCCCCC--CCCCcccc--cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 789 ARSGAYNRTL--TPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 789 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
.-.-+.+... .+..+... .-+.|.-... ++-...+.+.+.|.|++.|.+|..|| +-+.+++|+..... .
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~--~ 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR--T 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHhh---hcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh--h
Confidence 9887665411 11111111 1112221112 23333455678999999999999999 99999999988765 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++..||++.|.-+... .-+++.|.+||.+..+.
T Consensus 252 Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred hhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 68899999999865433 34678899999887653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=182.69 Aligned_cols=253 Identities=16% Similarity=0.159 Sum_probs=179.0
Q ss_pred CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002164 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (958)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (958)
..+.+++|+.... .++..+||+++.+++..++++..... +..++|||||+.|+|.....
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~------------ 211 (417)
T TIGR02800 153 AFSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES------------ 211 (417)
T ss_pred CcCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC------------
Confidence 3477899987532 35577899999998888888875542 55889999999999882110
Q ss_pred CCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCc
Q 002164 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (958)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~ 355 (958)
+..+||++++ +|+.+.+... +....+.|||||+.|+|+.....
T Consensus 212 ----------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~- 256 (417)
T TIGR02800 212 ----------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG- 256 (417)
T ss_pred ----------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC-
Confidence 2256999999 8877766654 45567899999999999864321
Q ss_pred cccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeE
Q 002164 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (958)
Q Consensus 356 ~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l 435 (958)
..+|+++++.++..+.++..... ...+.|+|||++|+|..+. .....|
T Consensus 257 ---------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~i 304 (417)
T TIGR02800 257 ---------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQI 304 (417)
T ss_pred ---------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceE
Confidence 23799999998877777654311 2357899999999986332 223479
Q ss_pred EEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCce
Q 002164 436 YTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMM 515 (958)
Q Consensus 436 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (958)
|++++ ++++.++++........+.|||||+.|+|.....+ ..+|+.++++++ ..+.+..... . . .+
T Consensus 305 y~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~-~~~i~~~d~~~~--~~~~l~~~~~-~-----~--~p 370 (417)
T TIGR02800 305 YMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG-GFNIAVMDLDGG--GERVLTDTGL-D-----E--SP 370 (417)
T ss_pred EEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC-ceEEEEEeCCCC--CeEEccCCCC-C-----C--Cc
Confidence 99995 66777777665556678999999999999876553 368999999874 3344432211 1 1 15
Q ss_pred EeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 516 RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 516 ~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
+|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 371 ~~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 7999999999987421 123688888776666666543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=178.60 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=157.4
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+..++...+|.++++..+.|.. +.++||++||... ........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE-
Confidence 45567777899999998887632 2468999999421 111122345568899999999
Q ss_pred CCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
.|.+|+|.+... ...+...++|+.++++.+.+. .+..++.++||||||.+++.++.++|++++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666677876432 123567788888888877654 23468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------CC-cc--c----ccchhh-hcHHHHHhc--------------
Q 002164 791 SGAYNRTLT-P---------------------------FG-FQ--N----EDRTLW-EATSTYVEM-------------- 820 (958)
Q Consensus 791 ~~~~~~~~~-~---------------------------~~-~~--~----~~~~~~-~~~~~~~~~-------------- 820 (958)
+|....... + +. .. . ...... ...+.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 00 00 0 000000 000001000
Q ss_pred -------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCccc--HHHHHH
Q 002164 821 -------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVLW 888 (958)
Q Consensus 821 -------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~~--~~~~~~ 888 (958)
.....+.++++|+|++||++|..|+ +..+.++++.++..+ ..+++++||+++|.+..... ...+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456788999999999999999 899999999998765 34689999999999764443 677889
Q ss_pred HHHHHHHHh
Q 002164 889 ETDRWLQKY 897 (958)
Q Consensus 889 ~i~~fl~~~ 897 (958)
.|.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999875
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=166.18 Aligned_cols=212 Identities=20% Similarity=0.190 Sum_probs=164.0
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.++++..+ ..+.+++.+|++ .++.|+||++|+-.. ........++.||.+||.|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~G---------------l~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIFG---------------LNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEecccC---------------CchHHHHHHHHHHhCCcEEEech
Confidence 456777756 899999999986 334599999998421 11122356788999999999988
Q ss_pred CCCCCCCCCccc--c---h------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 720 TTPIIGEGDEEA--N---D------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 720 ~~~~~G~G~~~~--~---~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.+...|...... . . ........|+.++++||..++.+++++|+++|+||||.+++.++.+.| .++|++
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 876555332221 0 0 111567899999999999999899999999999999999999999986 699999
Q ss_pred EeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
+..|..-. +......++++|+|+.+|+.|..+| ...-..+.+++...++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 98774210 0111155789999999999999998 888889999999998899999
Q ss_pred EeCCCCccCCCcc----------cHHHHHHHHHHHHHHhhc
Q 002164 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 869 ~~p~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (958)
+|+++.|.|.... .....++++++||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999987442 235678889999998874
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=163.25 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=161.9
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
..+.+..+++.|..+.+..+.|+.. ..+++++.||.... +. ........+.. ..+.++
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~D-------lg--------q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAAD-------LG--------QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccc-------hH--------HHHHHHHHHhhcccceEE
Confidence 4567778888999999999998742 36999999994211 00 00011222322 489999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
. +|+.|+|.+.+...- ...++|+.++.+||++... .+++|+|+|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCccc-ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 788899988664332 3889999999999999865 6789999999999999999999996 9999999998774
Q ss_pred CCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
.-..+ .....+.|- ..+.-++.+..+++|+||+||++|.+|+ +.++.+++++++.+ ++..+..|+||.
T Consensus 166 ~rv~~--~~~~~~~~~-----d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYCF-----DAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEee-----ccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 32211 111111221 1222367778889999999999999999 99999999999875 788899999998
Q ss_pred CCCcccHHHHHHHHHHHHHHhh
Q 002164 877 YAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 63 334566777777776654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=173.57 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=192.4
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (958)
||||++++|..+....-..+...++|++|+++++.++++..... ...+.|||||+.|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977644333334567899999999999999876222 6689999999999998
Q ss_pred CCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCc-------------------cccc
Q 002164 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (958)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~-------------------~~~~ 336 (958)
...+||+.++ ++..++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 3456999988 78888887642 1245
Q ss_pred cccCCCCcEEEEEeecCCcccc--c------------------cC-C--CCCceeEEEeccCceEEEeccCCccccCccc
Q 002164 337 LDPSPDEKYILISSIHRPYSFI--V------------------PC-G--RFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~--~------------------~~-~--~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~ 393 (958)
+.|||||++|+|...+...... . |. + .-.-+++++++++++...+.....
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~------- 178 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS------- 178 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH-------
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc-------
Confidence 6799999999999865431100 0 00 0 011256667777655443322100
Q ss_pred ccccccCcceeeeecCCCCceEE-EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--ecccc---Cceeee-cC
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRY---GGISWC-DD 466 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~---~~~~~s-pD 466 (958)
..........+.|++|++.+++. .++. ...-.++++++ ..+..+.+.. .+..+ ..+.|. ++
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~---------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRD---------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETT---------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred cCCCccCcccceecCCCcEEEEEEcccC---------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 00111334679999999966654 3321 22334677775 4445544422 22222 245665 89
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+..+++.+..++ ..+||.++.+++ ..+.++........ .+.|+++++.|+|.....
T Consensus 247 ~~~~l~~s~~~G-~~hly~~~~~~~--~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a~~~--------------- 302 (353)
T PF00930_consen 247 GNEFLWISERDG-YRHLYLYDLDGG--KPRQLTSGDWEVTS------ILGWDEDNNRIYFTANGD--------------- 302 (353)
T ss_dssp SSEEEEEEETTS-SEEEEEEETTSS--EEEESS-SSS-EEE------EEEEECTSSEEEEEESSG---------------
T ss_pred CCEEEEEEEcCC-CcEEEEEccccc--ceeccccCceeecc------cceEcCCCCEEEEEecCC---------------
Confidence 999999888554 689999999985 44566655433211 166888988888887431
Q ss_pred CCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCc
Q 002164 547 PEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (958)
Q Consensus 547 ~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (958)
.....+||.++++ +++.++|+...+.. ...+|||||+.++..++++..|+
T Consensus 303 -~p~~r~lY~v~~~~~~~~~~LT~~~~~~------------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 303 -NPGERHLYRVSLDSGGEPKCLTCEDGDH------------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -GTTSBEEEEEETTETTEEEESSTTSSTT------------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred -CCCceEEEEEEeCCCCCeEeccCCCCCc------------eEEEECCCCCEEEEEEcCCCCCC
Confidence 1234689999999 99999999877641 13679999999999999998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=171.63 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=158.3
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
..+.++++..+| .+.+.+|.|.. . ..|+||++|||.+..+ +.+.+ ...+..|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFILG--------NLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccCC--------Cchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1 2699999999865432 22222 134556776 599999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEE
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (958)
.++|+.... ..++..+.|+.++++|+.++ ..+|++||+|+|+|+||.+|+.++.+. +.+++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988864332 22355788999999999874 347899999999999999999988752 3578999
Q ss_pred EEeccCCCCCCCCCCcccccch-hh--hcHHH----H-----HhcCccccc--CCC---CCCEEEEeeCCCCCCCCChHH
Q 002164 788 IARSGAYNRTLTPFGFQNEDRT-LW--EATST----Y-----VEMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (958)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~-----~~~sp~~~~--~~~---~~P~Lii~G~~D~~v~~~~~~ 850 (958)
++++|+++.............. .+ ...+. | ...+|.... ..+ -.|++|++|+.|.. .++
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 9999987743211000000000 00 00000 1 012232111 223 36999999999987 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhhc
Q 002164 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (958)
++.+.++|+++|+++++.+++|..|+|... +...+.++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997432 3345778889999988864
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-16 Score=184.81 Aligned_cols=193 Identities=20% Similarity=0.215 Sum_probs=145.6
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRR---------------GVAHPSKIAVGGH 766 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~---------------~~~d~~~i~l~G~ 766 (958)
....+|+++||+|+. .+.+|.|.|.+.. .+...+.+|..++|+||..+ ++. ..||+++|.
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 455789999999999 5556666665542 33478899999999999953 344 479999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC--C-------CCccccc---------------------chhhh----
Q 002164 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-------FGFQNED---------------------RTLWE---- 812 (958)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--~-------~~~~~~~---------------------~~~~~---- 812 (958)
||||++++.+|+..|+.++|+|+.+++.++... . .++..+. ...++
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988999999999988764210 0 0110000 00000
Q ss_pred ------------cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 813 ------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 813 ------------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|++|+..++++++++.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012234556777889999999999999999998 8999999999999999999987776 7876444
Q ss_pred ccHHHHHHHHHHHHHHhhccCC
Q 002164 881 ESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
....++.+.+.+||++||++..
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCC
Confidence 4556788899999999998654
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=172.35 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=158.5
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.....+...++..+++.+|.|.. ..+.|+||++||.... .......+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 34566777788899999998853 1236899999995311 11112456678889999999
Q ss_pred CCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEecc
Q 002164 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSG 792 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~ 792 (958)
+|.+|+|.+.... .......+|+.++++++.... +..+++|+||||||.+++.++. +| ++++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6667788765432 234567889999999997652 2247999999999999997764 44 37999999988
Q ss_pred CCCCCCC---------------C-CCcccc--c-chhhhcHHH----H------------------Hhc-C-cccccCCC
Q 002164 793 AYNRTLT---------------P-FGFQNE--D-RTLWEATST----Y------------------VEM-S-PFMSANKL 829 (958)
Q Consensus 793 ~~~~~~~---------------~-~~~~~~--~-~~~~~~~~~----~------------------~~~-s-p~~~~~~~ 829 (958)
....... + +.+... . .....++.. + .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 6532210 0 000000 0 000000000 0 000 0 12345678
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++|+|++||++|..+| +..++++++.+... .+++.+||+++|.+......+++++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999886543 467888999999986666788999999999999874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=157.12 Aligned_cols=325 Identities=16% Similarity=0.202 Sum_probs=196.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
+-.++|||||++||..+.+ +++.+||+.+. .+....+++. ..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~KgH~--~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKGHK--NW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecCCc--cE
Confidence 4457788888888876654 68899999551 2334444433 58
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEe-----cCCeEEEEEec
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~ws-----pDG~~l~~~~~ 263 (958)
+..++|||||++||... -.+.|.+||+++|+.. .|..+... +..++|- |+.++|+..+
T Consensus 160 VlcvawsPDgk~iASG~---------~dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep~hl~p~~r~las~s- 224 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS---------KDGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEPLHLVPPCRRLASSS- 224 (480)
T ss_pred EEEEEECCCcchhhccc---------cCCeEEEecCCCCCcccccccCcccc-----eeEEeecccccCCCccceeccc-
Confidence 99999999999999844 4778999999987653 34333332 6778886 5666666441
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccC
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~S 340 (958)
+.+.+.++|+ .| ....++.+ ..++.+.|-
T Consensus 225 ------------------------------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 225 ------------------------------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred ------------------------------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 2234556666 44 44455555 678888886
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCcc-ccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|.-+.|+... +.+|.+|+.. |.-.+.|..+... +.+.. +.....+.=+|.|-|++.--..+
T Consensus 257 --G~gliySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lal---sTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 --GEGLIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLAL---STDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred --CCceEEecCC------------CceEEEEEccchhHHHhhcccchheeeeec---cchhhhhccccccccccCCChHH
Confidence 4446676633 4589999876 3333444332210 00000 00000111223333332110000
Q ss_pred ------------eccCCCcccccccCCeEEEEeCCCCCCC-CceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
..+.+...+..+....+++|+. .... ...+.+.+..-+..+.|||||++|+.++.++. .+||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p--~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--VkLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP--FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS--VKLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecc--cccccchhhhhchhhheeeEEECCCccEEEEeecccc--eeeee
Confidence 0111122233355667999983 4443 33456778888999999999999999987776 66775
Q ss_pred EcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
.+ + ++....+..+...+|. ++||.|.+.|+..+++ ..|.+|++.+++..
T Consensus 396 g~--t--Gk~lasfRGHv~~VYq------vawsaDsRLlVS~SkD---------------------sTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--T--GKFLASFRGHVAAVYQ------VAWSADSRLLVSGSKD---------------------STLKVWDVRTKKLK 444 (480)
T ss_pred CC--C--cchhhhhhhccceeEE------EEeccCccEEEEcCCC---------------------ceEEEEEeeeeeec
Confidence 44 3 3445556667777776 8999999988877643 25999999877654
Q ss_pred EEecCCcccccceeEeecCCCccccccccCCEEE
Q 002164 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (958)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (958)
.=..+... .+.. ++|||||.++.
T Consensus 445 ~DLpGh~D----EVf~-------vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVFA-------VDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEEE-------EEecCCCceee
Confidence 32221111 1222 57899998654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=170.39 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=164.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.++++.|- || ...+.++. ....+..|.|||||+.|+|..-.. .+..++|++++++|+..++......
T Consensus 173 ~~l~~~D~--dg--~~~~~l~~--~~~~~~~p~ws~~~~~~~y~~f~~-----~~~~~i~~~~l~~g~~~~i~~~~g~-- 239 (425)
T COG0823 173 YELALGDY--DG--YNQQKLTD--SGSLILTPAWSPDGKKLAYVSFEL-----GGCPRIYYLDLNTGKRPVILNFNGN-- 239 (425)
T ss_pred ceEEEEcc--CC--cceeEecc--cCcceeccccCcCCCceEEEEEec-----CCCceEEEEeccCCccceeeccCCc--
Confidence 46777654 34 44555543 334688899999999999986422 1227899999999888777665543
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
-..++|||||+.|+|..... +..+||++|+
T Consensus 240 ---~~~P~fspDG~~l~f~~~rd----------------------------------------------g~~~iy~~dl~ 270 (425)
T COG0823 240 ---NGAPAFSPDGSKLAFSSSRD----------------------------------------------GSPDIYLMDLD 270 (425)
T ss_pred ---cCCccCCCCCCEEEEEECCC----------------------------------------------CCccEEEEcCC
Confidence 34899999999999983211 3457999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..++|+.. +....+.|||||++|+|++++.+ .-+|++++.+++..++++......
T Consensus 271 ~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~------------ 328 (425)
T COG0823 271 GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGN------------ 328 (425)
T ss_pred CCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCC------------
Confidence 7777788887 66679999999999999996643 228999999999998888754332
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
..+.|||||++|+|.... + +.-.+...++ .++.. .++.........+.|+++|+.|.|.+...++
T Consensus 329 -~~p~~SpdG~~i~~~~~~--~--------g~~~i~~~~~--~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~- 393 (425)
T COG0823 329 -SNPVWSPDGDKIVFESSS--G--------GQWDIDKNDL--ASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQGGG- 393 (425)
T ss_pred -cCccCCCCCCEEEEEecc--C--------CceeeEEecc--CCCCc-EEEccccccCCCCCcCCCCceEEEeccCCCC-
Confidence 356799999999996311 1 1123555553 23333 3444444556789999999999999876643
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..++.++.++.
T Consensus 394 ~~l~~~s~~g~ 404 (425)
T COG0823 394 SVLSLVSLDGR 404 (425)
T ss_pred ceEEEeeccce
Confidence 67888887763
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=154.48 Aligned_cols=231 Identities=17% Similarity=0.152 Sum_probs=160.2
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
.++-.++|++.+|.+|.+|+++|.. .++++|+||..||-....+ .+ .-...|+..||+|+
T Consensus 54 ve~ydvTf~g~~g~rI~gwlvlP~~----~~~~~P~vV~fhGY~g~~g--------~~--------~~~l~wa~~Gyavf 113 (321)
T COG3458 54 VEVYDVTFTGYGGARIKGWLVLPRH----EKGKLPAVVQFHGYGGRGG--------EW--------HDMLHWAVAGYAVF 113 (321)
T ss_pred eEEEEEEEeccCCceEEEEEEeecc----cCCccceEEEEeeccCCCC--------Cc--------cccccccccceeEE
Confidence 4567889999999999999999975 2366999999999432111 11 11336789999999
Q ss_pred EcCCCCCCCCCCc----ccc----------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 717 GGPTTPIIGEGDE----EAN----------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 717 ~~~~~~~~G~G~~----~~~----------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.++.||..+.... ... .-++...+.|+..+++-+...+.+|.+||++.|.|.||.+++.+
T Consensus 114 ~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaa 193 (321)
T COG3458 114 VMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAA 193 (321)
T ss_pred EEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhh
Confidence 9666555443110 000 01123458899999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEEeccCCCCCCCCCCccc-----ccchhh--------hcHHHHHhcCcccccCCCCCCEEEEeeCCCCC
Q 002164 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQN-----EDRTLW--------EATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (958)
++.. ++++++++..|.......-+.... +..++. +-.+.+...+..+.+.++|.|+|+..|..|+.
T Consensus 194 aal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~v 272 (321)
T COG3458 194 AALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPV 272 (321)
T ss_pred hhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCC
Confidence 9999 579999999987542111111100 000110 11133344455667788999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|| |.-....|++|... +++.+||.-+|.-... ...+++..|+..-
T Consensus 273 cp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p~----~~~~~~~~~l~~l 317 (321)
T COG3458 273 CP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGPG----FQSRQQVHFLKIL 317 (321)
T ss_pred CC--ChhhHHHhhcccCC---ceEEEeeccccccCcc----hhHHHHHHHHHhh
Confidence 98 88888888888654 6888899878875321 2234466776553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=149.84 Aligned_cols=169 Identities=11% Similarity=0.073 Sum_probs=118.0
Q ss_pred hcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 312 ATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
..++.++++. .|-.-++...+.+.-..++-|++.++....+. ..+-++|.+|++.+++...-
T Consensus 339 SRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~l----- 401 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKDL----- 401 (668)
T ss_pred ecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCCc-----
Confidence 4567777777 77677776665566666777888777666442 27889999999988765421
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCce
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLA 469 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~ 469 (958)
..+..+..||||+.+++. ..+.+||++|+ ++++++.+.... +-+..+.|+|++++
T Consensus 402 --------g~I~av~vs~dGK~~vva-------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 402 --------GNIEAVKVSPDGKKVVVA-------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred --------cceEEEEEcCCCcEEEEE-------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcCCcee
Confidence 445688999999998884 55678999996 778888885543 45678999999999
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeee
Q 002164 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
|+|+-..+--...|.+.|.+++ +...++.....+ .+ ++|.|||++|+|.+..
T Consensus 458 iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~D-----fs--PaFD~d~ryLYfLs~R 509 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYD-----FS--PAFDPDGRYLYFLSAR 509 (668)
T ss_pred EEEecCcceeeeeEEEEecCCC--eEEEecCCcccc-----cC--cccCCCCcEEEEEecc
Confidence 9998653322244666666663 323333333222 23 5689999999998765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-15 Score=163.61 Aligned_cols=229 Identities=17% Similarity=0.127 Sum_probs=165.4
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+++|+... ..+....+||+.|-++-..+.++..... +..++|+||++.|+|..-..+
T Consensus 158 ~~i~~v~~~---~~~~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~~~-------------- 215 (425)
T COG0823 158 TRIAYVAES---DGGPLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFELG-------------- 215 (425)
T ss_pred ceEEEEeec---ccCCCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEecC--------------
Confidence 355554321 2344577899999886666777654443 568999999999998821111
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
+..++|++++ +|+...+... +....+.|||||++|+|...+..
T Consensus 216 -------------------------------~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg---- 260 (425)
T COG0823 216 -------------------------------GCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG---- 260 (425)
T ss_pred -------------------------------CCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----
Confidence 1156999999 7766666654 67788999999999999996642
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
..+||++|++++..++|+.....+ ..+.|||||++|+|.++. +++.+||++
T Consensus 261 ------~~~iy~~dl~~~~~~~Lt~~~gi~-------------~~Ps~spdG~~ivf~Sdr----------~G~p~I~~~ 311 (425)
T COG0823 261 ------SPDIYLMDLDGKNLPRLTNGFGIN-------------TSPSWSPDGSKIVFTSDR----------GGRPQIYLY 311 (425)
T ss_pred ------CccEEEEcCCCCcceecccCCccc-------------cCccCCCCCCEEEEEeCC----------CCCcceEEE
Confidence 348999999998888888766544 356799999999997443 445689999
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
+. +|+..++++........+.|||||++|+|....++. ..+...++.++. ..+.++ ..... . .++|+
T Consensus 312 ~~---~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~~~~-~~~~lt-~~~~~-----e--~ps~~ 378 (425)
T COG0823 312 DL---EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLASGG-KIRILT-STYLN-----E--SPSWA 378 (425)
T ss_pred CC---CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccCCCC-cEEEcc-ccccC-----C--CCCcC
Confidence 95 888888898777766689999999999999843332 667777777652 222222 22111 1 16699
Q ss_pred cCCceEEEEe
Q 002164 519 STGTYVIAKI 528 (958)
Q Consensus 519 pdG~~l~~~~ 528 (958)
++|+.+.|..
T Consensus 379 ~ng~~i~~~s 388 (425)
T COG0823 379 PNGRMIMFSS 388 (425)
T ss_pred CCCceEEEec
Confidence 9999999886
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-15 Score=157.10 Aligned_cols=231 Identities=19% Similarity=0.155 Sum_probs=160.8
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
.+..+.+.||..+....+.++.. +..+||++||.. ++...+...+..|+++||.|++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999987641 237899999952 3444445567789999999999
Q ss_pred CCCCCCCCCcc-cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|.+|+|.+. +. -..+...+.|+.+.++.+.+.. -..+++++||||||.+++.++.+.+..+.++|+.+|.+.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 7888998885 32 2225666777777777776641 235899999999999999999999999999999999866
Q ss_pred CCC---C----------------CCCccc----ccchhh--hcH---HHHHh--------------------cC--cccc
Q 002164 796 RTL---T----------------PFGFQN----EDRTLW--EAT---STYVE--------------------MS--PFMS 825 (958)
Q Consensus 796 ~~~---~----------------~~~~~~----~~~~~~--~~~---~~~~~--------------------~s--p~~~ 825 (958)
... . .+.+.. ....-| .++ +.|.+ .. ....
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~ 223 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRD 223 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhc
Confidence 441 0 011111 000000 011 11110 01 1122
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhhc
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (958)
..++++|+|+++|++|.+|+. .+...++++++... .+++++|||+.|.+....+. ..+++.+.+||..++.
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred cccccCCEEEEecCCCccccC-cHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 455689999999999999861 25556666665443 26999999999998877777 8899999999998763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=148.23 Aligned_cols=326 Identities=13% Similarity=0.142 Sum_probs=167.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.-....|.+||++|+|.++ .++..+||++|+++++.+|||..+... .-...++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5567899999999999775 568999999999999999999977532 22567889999988761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~SpDGk 344 (958)
...+|+.+++ +++.+.|..- ..+.......|+.
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1236999999 8877766543 2223333456888
Q ss_pred EEEEEeecCCcccccc---------CCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 345 YILISSIHRPYSFIVP---------CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~---------~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.++.....+......+ ..+-...|..+|+.+++.+.+.... ....-+.|||.-..++.
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-------------~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-------------DWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-------------S-EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-------------ccccCcccCCCCCCEEE
Confidence 8877664432111111 2233457888999998888776532 23356789987666665
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCceEEEEEecc-ccceEEEEEcCCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSKD 492 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~~~~~~~ 492 (958)
.....+.. .-..+||+++. +|+..+.+.... ..+.--.|+|||+.|+|..... +...-|..++++++
T Consensus 205 fCHEGpw~------~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 205 FCHEGPWD------LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp EEE-S-TT------TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred EeccCCcc------eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 55443221 11237999995 777777773322 2234468999999999976533 32345777888875
Q ss_pred CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
+...+...+... ++.-|+||+.++=-.. |.+.. ....+...-.+.+.||+++++.+..+.|.....
T Consensus 275 -~~~~~~~~p~~~--------H~~ss~Dg~L~vGDG~--d~p~~---v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 275 -ERRRLMEMPWCS--------HFMSSPDGKLFVGDGG--DAPVD---VADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp --EEEEEEE-SEE--------EEEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE---
T ss_pred -CceEEEeCCcee--------eeEEcCCCCEEEecCC--CCCcc---ccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 333333332211 2556899986553321 11110 000000111245789999999988887776542
Q ss_pred ccccceeEeecC-----CCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 573 EKYYETTVALMS-----DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
. ..++. ....++|||||++++|+..- ..++.||.++++.
T Consensus 341 s------w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 341 S------WKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIPD 384 (386)
T ss_dssp ----------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--C
T ss_pred c------ceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCcc
Confidence 1 11111 23458999999999998775 4567899988754
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=151.83 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHH
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (958)
.....+.+.++++.++..+++++|+++|+|+||.+++.++.+.|+.++++++.++.+.. . +
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~----------~--- 142 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------L----------P--- 142 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------c----------c---
Confidence 33455667777777777788899999999999999999999998888888877763210 0 0
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.....++|+|++||++|.+|| ++.+.+++++|+..|.++++..||+++|.+. .+..+.+.+||.++
T Consensus 143 -------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~ 208 (232)
T PRK11460 143 -------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYT 208 (232)
T ss_pred -------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHH
Confidence 001236899999999999999 9999999999999999999999999999985 34567788888887
Q ss_pred hcc
Q 002164 898 CVS 900 (958)
Q Consensus 898 l~~ 900 (958)
+..
T Consensus 209 l~~ 211 (232)
T PRK11460 209 VPK 211 (232)
T ss_pred cch
Confidence 743
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=142.95 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=141.4
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc--cchhhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~--~~~~~~~~~~~D~~~av~ 748 (958)
-.||++||.. |++... ....+.|.++||.|.+|.+ +|+|... .-..-.....+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 6788899942 222222 2456678889999999666 4666432 122334577899999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccc-----------ccchhhhcHHHH
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (958)
+|.+.++ +.|++.|.||||.+|+.+|.+.| .+++|..++..+......-+.. +........+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998876 58999999999999999999996 7888887776542211100000 000000001111
Q ss_pred Hhc----------------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 818 VEM----------------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 818 ~~~----------------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
..+ .....+++|..|+||+.|.+|+.|| .+.+.-+|+.+.. .+.++.+|++.||.++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVES--DDKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccC--CcceeEEEccCCceeecch
Confidence 111 2235677889999999999999999 8888888888765 4789999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 002164 882 SIMHVLWETDRWLQ 895 (958)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (958)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999999986
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=174.24 Aligned_cols=233 Identities=20% Similarity=0.255 Sum_probs=151.7
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.||.+|.+.+|+|++ .++.|+||++||....... ...........|+++||+|+. .+.
T Consensus 1 i~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~ 61 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDT 61 (550)
T ss_pred CcCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eec
Confidence 357899999999999975 2358999999985311000 000111234578999999999 555
Q ss_pred CCCCCcccchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---
Q 002164 724 IGEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--- 799 (958)
Q Consensus 724 ~G~G~~~~~~~~~-~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--- 799 (958)
+|+|.+.+..... ....+|+.++++|+.++++.+ .+|+++|+||||.+++.+|...|+.++|+|+.++..+....
T Consensus 62 RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~ 140 (550)
T TIGR00976 62 RGRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAF 140 (550)
T ss_pred cccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhcc
Confidence 6777665533223 578999999999999998876 69999999999999999999998999999998887653211
Q ss_pred CCCccc-------------ccc--------------hhhh---cH-------------------------------HHHH
Q 002164 800 PFGFQN-------------EDR--------------TLWE---AT-------------------------------STYV 818 (958)
Q Consensus 800 ~~~~~~-------------~~~--------------~~~~---~~-------------------------------~~~~ 818 (958)
.-.+.. ... .... .. +.+.
T Consensus 141 ~g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 220 (550)
T TIGR00976 141 PGALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWV 220 (550)
T ss_pred CCeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhc
Confidence 000000 000 0000 00 0001
Q ss_pred hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--------ccHHHHHH--
Q 002164 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--------ESIMHVLW-- 888 (958)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--------~~~~~~~~-- 888 (958)
..+....++++++|+|++.|-.|.. ...+.+.|++++..+ +.++++=|. .|..... ........
T Consensus 221 ~~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~ 294 (550)
T TIGR00976 221 SISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEA 294 (550)
T ss_pred cCchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhh
Confidence 1122335567899999999999943 456777888887654 567765554 6752100 00011112
Q ss_pred HHHHHHHHhhccCC
Q 002164 889 ETDRWLQKYCVSNT 902 (958)
Q Consensus 889 ~i~~fl~~~l~~~~ 902 (958)
.+++||++||++..
T Consensus 295 ~~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 295 EQLAFFDRHLKGGT 308 (550)
T ss_pred hhHHHHHHHhCCCC
Confidence 46899999998654
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=160.58 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=117.8
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCccc---CCCCCCCCcCcHHHHHHHH
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR---GSPNEFPRIGSTSVLLWLA 710 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~ 710 (958)
...+..|.+.|...++..+++++++|++. ++|.|+||++||.........+... .....+..........||+
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 44567889999999999999999999874 4679999999995322111111100 0011122222345778999
Q ss_pred CCcEEEEcCCCCCCCCCCccc----------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 002164 711 RGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY 768 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~ 768 (958)
+||+|+++|.. |+|+... ...+......|.+.++|||..++.||++||+++|+||
T Consensus 159 ~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 99999995544 4443311 0111233467788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEEeccCCCCC-----CCC------CCccc----ccchhh---hcHHHHHhcCcccccCCCC
Q 002164 769 GAFMTANLLAHAPHLFCCGIARSGAYNRT-----LTP------FGFQN----EDRTLW---EATSTYVEMSPFMSANKLK 830 (958)
Q Consensus 769 GG~~a~~~a~~~p~~~~a~v~~~~~~~~~-----~~~------~~~~~----~~~~~~---~~~~~~~~~sp~~~~~~~~ 830 (958)
||+.++++++.+ ++++++|..+-++... ++. .++.+ ....+| +.++...-. ..
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasli--------AP 306 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLI--------AP 306 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTT--------TT
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHh--------CC
Confidence 999999999999 7898888776543210 000 00000 001111 112211111 24
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.|+|++.|..|..+| . .++-|+.. .++.+.++..||+
T Consensus 307 RPll~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 307 RPLLFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp S-EEESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred CcchhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 799999999998865 3 33444433 3345688888885
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=151.71 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=160.2
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~ 717 (958)
...+++. ....+..++|+|....+.. ..|+|||+|||.|..+.... ..+..+...++ +.+.+|+.
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~vvvS 128 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCVVVS 128 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeEEEe
Confidence 3444444 4566888999998755422 38999999999876543222 22334555664 47999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEE
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (958)
++| +.++++.++..++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.
T Consensus 129 VdY--------RLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ 200 (336)
T KOG1515|consen 129 VDY--------RLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQ 200 (336)
T ss_pred cCc--------ccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEE
Confidence 888 4467778899999999999999986 468999999999999999999988753 3578999
Q ss_pred EEeccCCCCCCCC-------CCcccc-----cchhhhc--HHHH-H----hcCcccc-----c-CCCCCCEEEEeeCCCC
Q 002164 788 IARSGAYNRTLTP-------FGFQNE-----DRTLWEA--TSTY-V----EMSPFMS-----A-NKLKKPILLVHGEEDN 842 (958)
Q Consensus 788 v~~~~~~~~~~~~-------~~~~~~-----~~~~~~~--~~~~-~----~~sp~~~-----~-~~~~~P~Lii~G~~D~ 842 (958)
|++.|++...... ...... ....|.. ++.. . ..+|..+ . ...-.|+||+.++.|.
T Consensus 201 ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~ 280 (336)
T KOG1515|consen 201 ILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDV 280 (336)
T ss_pred EEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchh
Confidence 9999986532210 000000 0111210 0000 0 1123321 1 1122579999999997
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHh
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKY 897 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~ 897 (958)
. .+++..+.++|++.|++++++.++++.|.+.. .+........+.+|+.+.
T Consensus 281 L----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 281 L----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred h----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 6 68899999999999999999999999998632 134566777788888754
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-15 Score=155.17 Aligned_cols=213 Identities=24% Similarity=0.310 Sum_probs=137.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
||++|.+.+|+| +.. ..+++|+||..|+....... ..... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~--~~~~~P~il~~tpY~~~~~~-~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD--GGGPFPVILTRTPYGKGDQT-ASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---T--TSSSEEEEEEEESSTCTC-H-HHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCC--CCCcccEEEEccCcCCCCCc-ccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 322 24569999999884210000 00000 0000000011239999999999 5556777
Q ss_pred Ccccchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---CCc
Q 002164 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGF 803 (958)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~ 803 (958)
.|.+.... ...+.+|..++|+|+.++++.| .||+++|.||+|+.++.+|+..|+.++|++...+..|..... -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77765544 7889999999999999998876 699999999999999999998888999999998877754310 000
Q ss_pred ccc-cchhh---------------------h-------------------------------cHHHHHhcCcccccCCCC
Q 002164 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (958)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~~~ 830 (958)
... ....| . ....+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00001 0 001222334444568899
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~ 876 (958)
+|+|++.|..|..+ ...+.+.|++|+..+ .+.+|++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478999999999998 7889988886 775
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-15 Score=150.78 Aligned_cols=189 Identities=16% Similarity=0.109 Sum_probs=117.8
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc--c
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~--~ 731 (958)
+++|+|+++. +++|+||++||++..... +.. ...+...+.+.||+|+++++++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~~~-----------~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTASA-----------YVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCHHH-----------Hhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 3689998742 348999999997532211 100 001233444589999997776543221111 0
Q ss_pred -c--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-Cccccc
Q 002164 732 -N--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-GFQNED 807 (958)
Q Consensus 732 -~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~~~~~~ 807 (958)
. .........|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++......... ......
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011224577888999999998889999999999999999999999999999999998887532111000 000000
Q ss_pred chhhhcHHHHHhc-Cc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 808 RTLWEATSTYVEM-SP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 808 ~~~~~~~~~~~~~-sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
..-.....+.+. .. .....+...|++|+||++|.+|| +..+++++++|+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 -CTAATAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred -CCCCCHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 000001111110 00 11122234567899999999999 99999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-13 Score=142.40 Aligned_cols=313 Identities=16% Similarity=0.137 Sum_probs=159.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
......|.+||++|+|.+.. ++ . .++|+.++.+ ++.+|||..+ +.
T Consensus 37 YF~~~~ft~dG~kllF~s~~----------------------dg--~------~nly~lDL~t----~~i~QLTdg~-g~ 81 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDF----------------------DG--N------RNLYLLDLAT----GEITQLTDGP-GD 81 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-T----------------------TS--S-------EEEEEETTT-----EEEE---SS--B
T ss_pred eecCCCcCCCCCEEEEEecc----------------------CC--C------cceEEEEccc----CEEEECccCC-CC
Confidence 34567899999999998863 11 1 3899999977 8889998643 22
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe--cCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDG~~l~~~~~~~~~ 267 (958)
......+||+++.|+|.++ ..+|+.+|+++++.+.+...+... .....|+ .|++.++........
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d 148 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISRED 148 (386)
T ss_dssp -TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG
T ss_pred CccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehh
Confidence 4556889999999999763 458999999999999998888753 3356676 567776654111000
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCC-CCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DGk 344 (958)
+..+-....-...+.......|+.+++ +|+.+.+... .....+.+|| |..
T Consensus 149 ---------------------------~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 149 ---------------------------WKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp --------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred ---------------------------ccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 000000011111222224577999999 9988888765 6667888999 677
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.|.|--.. | ....+..||+++.+|+..+.+...... ....---|+|||+.|.|......
T Consensus 202 li~fCHEG-p------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-----------e~~gHEfw~~DG~~i~y~~~~~~--- 260 (386)
T PF14583_consen 202 LIMFCHEG-P------WDLVDQRIWTINTDGSNVKKVHRRMEG-----------ESVGHEFWVPDGSTIWYDSYTPG--- 260 (386)
T ss_dssp EEEEEE-S--------TTTSS-SEEEEETTS---EESS---TT-----------EEEEEEEE-TTSS-EEEEEEETT---
T ss_pred EEEEeccC-C------cceeceEEEEEEcCCCcceeeecCCCC-----------cccccccccCCCCEEEEEeecCC---
Confidence 78886532 2 122345899999999888887654311 12234569999999999643221
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc------------cceEEEEEcCCCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKD 492 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~~~l~~~~~~~~~ 492 (958)
+...-|+.++. .+++.+.+...++ ..-+--|+||+.++=-..... +..-||++++..+
T Consensus 261 -----~~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~- 330 (386)
T PF14583_consen 261 -----GQDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG- 330 (386)
T ss_dssp -----T--EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-
T ss_pred -----CCceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-
Confidence 11223555664 4455555544433 334555788876543221110 1135777877764
Q ss_pred CCcEEEeccCCccc--cC--CCCCCceEeccCCceEEEEee
Q 002164 493 VAPRILFDRSSEDV--YS--DPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 493 ~~~~~~~~~~~~~~--~~--~~~~~~~~~spdG~~l~~~~~ 529 (958)
....+........ .. ....|.++|||||++|+|.+.
T Consensus 331 -~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 -RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred -ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 2233322211111 11 113577999999999999984
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=154.26 Aligned_cols=225 Identities=19% Similarity=0.216 Sum_probs=151.4
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
....+..+.+.+|.|.. ....+.|+|||+|||.|..+. ...+ .......++..|+.|+.++|+-
T Consensus 57 ~~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g~--------~~~~---~~~~~~~~~~~g~~vv~vdYrl-- 120 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLGS--------LRTH---DALVARLAAAAGAVVVSVDYRL-- 120 (312)
T ss_pred cCCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeecC--------hhhh---HHHHHHHHHHcCCEEEecCCCC--
Confidence 33455567789999921 123358999999998754332 1111 1233445667999999988853
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEeccCCCCC
Q 002164 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRT 797 (958)
Q Consensus 725 G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~ 797 (958)
.++..++..+.|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.+.++|..+..
T Consensus 121 ------aPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~ 194 (312)
T COG0657 121 ------APEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 (312)
T ss_pred ------CCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCc
Confidence 334456788999999999999873 4899999999999999999998886532 478888999987765
Q ss_pred CCCCCccc-ccchhhh-------cHHHH---------HhcCccccc--CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 798 LTPFGFQN-EDRTLWE-------ATSTY---------VEMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 798 ~~~~~~~~-~~~~~~~-------~~~~~---------~~~sp~~~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
...-.+.. ....... -...| ...+|+... .. -.|++|++|+.|.. ..++..+.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L 269 (312)
T COG0657 195 SSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERL 269 (312)
T ss_pred ccccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHH
Confidence 41000000 0000000 00000 123444322 22 47899999999987 45899999999
Q ss_pred HhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002164 859 KGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (958)
+..|+++++..+++..|.|. ........+..+.+|+..
T Consensus 270 ~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 270 RAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999883 222334445667777663
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=154.05 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=137.1
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH-HHHHHHCC
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS-VLLWLARG 712 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~G 712 (958)
+.....+++.|+-. |..|.+++.+|++ .+|+|+||++-|-. .+..-.... ...|+.+|
T Consensus 160 l~~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGlD---------------s~qeD~~~l~~~~l~~rG 218 (411)
T PF06500_consen 160 LSDYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGLD---------------SLQEDLYRLFRDYLAPRG 218 (411)
T ss_dssp HSSSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--TT---------------S-GGGGHHHHHCCCHHCT
T ss_pred hCCCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCcc---------------hhHHHHHHHHHHHHHhCC
Confidence 34456788889874 5899999999984 34699999876631 121111112 23478899
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
+++++ .+.+|.|.+.... .-++.-.-..++++||...+++|.+||+++|.|+||+.|..+|...+++++|+|+.++
T Consensus 219 iA~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga 294 (411)
T PF06500_consen 219 IAMLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGA 294 (411)
T ss_dssp -EEEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES-
T ss_pred CEEEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCc
Confidence 99999 6666777653211 1111112245889999999999999999999999999999999887789999999998
Q ss_pred CCCCCCCCCCccccc------------chh---hhc-HHHHHhcCccc--cc--CCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 793 AYNRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 793 ~~~~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
+++..++........ +.. ++. ......+|... .+ .+.++|+|.+.|++|.++| .+...
T Consensus 295 ~vh~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~ 372 (411)
T PF06500_consen 295 PVHHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSR 372 (411)
T ss_dssp --SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHH
T ss_pred hHhhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHH
Confidence 755333211100000 000 000 12234455543 23 6678899999999999988 76654
Q ss_pred HHHHHHHhCCCcEEEEEeCCCC-ccCCCcccHHHHHHHHHHHHHHhh
Q 002164 853 RFFNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
-++. .+.+-+...+|... |. .....+..+.+||+..|
T Consensus 373 lia~----~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 373 LIAE----SSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp HHHH----TBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHh----cCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 4432 34445666666433 32 34567888999998875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-14 Score=147.76 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=144.2
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.+.++. +|..+.++++.|.+- + .+.||++|||+... .++ +. .....+..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~~-------~g~---~~-~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS---H---TTGVLIVVGGPQYR-------VGS---HR-QFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC---C---CCeEEEEeCCcccc-------CCc---hh-HHHHHHHHHHHCCCEEEE--
Confidence 4566765 678899999999641 1 34566667653110 000 00 012346778899999999
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC
Q 002164 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
+|.+|+|.+............|+.++++++.++.. .-++|+++|||+||.+++.++... ++++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 66678887754433446678999999999987621 225799999999999999887664 679999999986432110
Q ss_pred CCC--c----c--cccchhhhc-----------HHHHHh----cCc--------------ccccCCCCCCEEEEeeCCCC
Q 002164 800 PFG--F----Q--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (958)
Q Consensus 800 ~~~--~----~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (958)
... . . ......|.. ...+.. ..+ ...+.++++|+|+++|..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 0 0 000011110 011111 101 11234668999999999997
Q ss_pred CCCCChHH-----HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..+ ... +.++.+.+.. ..++++.+|+++|.++....+..+.+.|.+||++
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 643 111 0222222322 3578999999999887777778899999999863
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-14 Score=153.28 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=148.7
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccC-------------CCCCCCCcCcHHHHHHHH
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (958)
+.+.||..|....|.|+. +..+|+++||-..-+.. .+++. .+++|..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 567799999999998852 35799999993211110 00000 011221122356788999
Q ss_pred CCcEEEEcCCCCCCCCCCcccc---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 002164 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~av~~l~~~------------------~~~d~~~i~l~G~ 766 (958)
+||.|++ .|.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 667788876532 1 23567788888888887652 1111347999999
Q ss_pred ChHHHHHHHHHHhCCC--------ceeEEEEeccCCCCCCC-----------------------C-CCcccccchhh---
Q 002164 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--- 811 (958)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~-----------------------~-~~~~~~~~~~~--- 811 (958)
||||.+++.++.+.+. .++++|+.+|.+..... + +.........+
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999988865432 58889888876421100 0 00000000000
Q ss_pred ------hcH------------HHHHhc--CcccccCCC--CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 812 ------EAT------------STYVEM--SPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 812 ------~~~------------~~~~~~--sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
.++ ..+... .....+.++ ++|+|++||++|..++ +..+.++++++... .+++++
T Consensus 230 ~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~~ 305 (332)
T TIGR01607 230 VNDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELHT 305 (332)
T ss_pred hhhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEEE
Confidence 000 000000 001123444 6899999999999998 88888888776543 468889
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 870 LPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 870 ~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
||+++|.+.......++++.+.+||+
T Consensus 306 ~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 306 LEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 99999999766667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=141.62 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=125.2
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTP 722 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~ 722 (958)
....|.+|...+|.|+++.+.+++ +|+||++||+.....+....+..+. -+..|+. -++-|++|.+-.
T Consensus 167 d~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~---------gaiawa~pedqcfVlAPQy~~ 236 (387)
T COG4099 167 DESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGI---------GAIAWAGPEDQCFVLAPQYNP 236 (387)
T ss_pred ccccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCc---------cceeeecccCceEEEcccccc
Confidence 344688999999999999988762 4999999997654333222222110 0112222 345566644321
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC
Q 002164 723 IIGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (958)
..-- ++. +. ........+.++ -|.+++.||.+||.++|.|+||++++.++.+.|+.|+|++.++|--+.
T Consensus 237 if~d--~e~--~t-~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 237 IFAD--SEE--KT-LLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred cccc--ccc--cc-chhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 1100 100 11 112222233343 667788999999999999999999999999999999999999985331
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p 871 (958)
...++.+ +.|+.++|+.+|..+| .++++-+++.|+..+.++.+..|.
T Consensus 307 ---------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ---------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ---------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhh
Confidence 0111222 5799999999999999 899999999999998888877665
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=144.13 Aligned_cols=274 Identities=14% Similarity=0.092 Sum_probs=188.1
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCch---------hcccccceeeceeecCCC--CCccceeeEeceeEEEccC
Q 002164 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKC--NTRSRMSFYTGIGIHQLFP 172 (958)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~ 172 (958)
++-+..++...+||+||+.||..+..+...++ .+.++..+++.+++-|.. ......+.++.+.+|+++.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 44566778899999999999998876444433 555677888889998884 2455666678899999854
Q ss_pred CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe
Q 002164 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 173 dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (958)
+ .....|+++. ..+..++|.|+|++|+..+- ...-.+||+.++....+-.+.... +.+++|.
T Consensus 251 e---~~l~~l~gH~--~RVs~VafHPsG~~L~Tasf---------D~tWRlWD~~tk~ElL~QEGHs~~----v~~iaf~ 312 (459)
T KOG0272|consen 251 E---TPLQDLEGHL--ARVSRVAFHPSGKFLGTASF---------DSTWRLWDLETKSELLLQEGHSKG----VFSIAFQ 312 (459)
T ss_pred C---cchhhhhcch--hhheeeeecCCCceeeeccc---------ccchhhcccccchhhHhhcccccc----cceeEec
Confidence 2 1233455433 58999999999999998652 334446677787766554444433 7799999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP- 330 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~- 330 (958)
|||..++...-+ ....|| |+ +|....+..
T Consensus 313 ~DGSL~~tGGlD-----------------------------------------------~~~RvW--DlRtgr~im~L~g 343 (459)
T KOG0272|consen 313 PDGSLAATGGLD-----------------------------------------------SLGRVW--DLRTGRCIMFLAG 343 (459)
T ss_pred CCCceeeccCcc-----------------------------------------------chhhee--ecccCcEEEEecc
Confidence 999988754111 223344 55 665444333
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
. ..+.+++|||+|-.|+..+.+ +.+.|||+..... +...|... .-+..+.|+|+
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH~----------nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAHS----------NLVSQVKYSPQ 398 (459)
T ss_pred cccceeeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceeccccc----------chhhheEeccc
Confidence 3 778899999999999988744 4889999985433 33333221 33467889996
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+...+++ .+.++.+-+|.. .+....+.|..++..+.++..|+||+.|+..+.+.+ .+||.
T Consensus 399 ~g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT--IKLWR 458 (459)
T ss_pred CCeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCce--eeecc
Confidence 5544443 134555666663 355566778888999999999999999998877665 66773
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=147.45 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=122.5
Q ss_pred EEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
||++|||.|..+... .....+..+++ +|++|+.++|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~------------~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE------------SHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTT------------THHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChH------------HHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 789999976543321 11345666775 999999988853 233456799999999999999
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEeccCCCC-CCCCCCcc----ccc---------chh
Q 002164 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGAYNR-TLTPFGFQ----NED---------RTL 810 (958)
Q Consensus 752 ~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~~~~-~~~~~~~~----~~~---------~~~ 810 (958)
++ ..+|+++|+|+|+|.||.+++.++.+.. ..++++++++|.++. ......+. ... ...
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 97 3478999999999999999999998532 248999999998776 21111000 000 000
Q ss_pred hhcH-----HHHHhcCcccccCCC--CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 811 WEAT-----STYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 811 ~~~~-----~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
+... ......+|+.. ..+ -.|++|++|+.|.. ..++.+++++|++.|+++++++++++.|.+
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1100 00112355544 123 25999999999975 578899999999999999999999999986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-14 Score=132.77 Aligned_cols=145 Identities=22% Similarity=0.225 Sum_probs=106.0
Q ss_pred EEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
+||++||+... .. .....++.|+++||.|+.+ +.++.+.+. ...++.++++++.
T Consensus 1 ~vv~~HG~~~~-----------~~----~~~~~~~~l~~~G~~v~~~---~~~~~~~~~--------~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS-----------RR----DYQPLAEALAEQGYAVVAF---DYPGHGDSD--------GADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT-----------TH----HHHHHHHHHHHTTEEEEEE---SCTTSTTSH--------HSHHHHHHHHHHH
T ss_pred CEEEECCCCCC-----------HH----HHHHHHHHHHHCCCEEEEE---ecCCCCccc--------hhHHHHHHHHHHH
Confidence 58899996321 11 1235677899999999994 445655541 1124555555554
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCC
Q 002164 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK 831 (958)
Q Consensus 752 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 831 (958)
+... |+++|+++|||+||.+++.++.+. +.++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 4322 889999999999999999999998 78999999988200 112335578
Q ss_pred CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
|+|+++|++|..++ +++.++++++++ .+.++.++++++|+
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999999887 46899999999995
|
... |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=129.34 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=139.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
+..+.++..-|. +.+ .|.|.. ....|+.|++|..|...+.. ........+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G~-le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm----------~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAGR-LEG-RYEPAK-----TPAAPIALICHPHPLFGGTM----------NNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCccc-cee-ccCCCC-----CCCCceEEecCCCccccCcc----------CCHHHHHHHHHHHhCCceEEe-
Confidence 345556554442 443 344443 22479999999987443322 222234556678899999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
++++|-|++.+.-+.+-.+.+|+.++++|++++.. +..-..+.|+|+|+++++.+|.+.|+ ....|+..|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 66677787877666667889999999999999743 22235789999999999999999965 6666777666541
Q ss_pred CCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+. + ..+.-...|.|+++|+.|.+|+ .....++.+ +.+.+++..++++|.|.
T Consensus 140 ~d----------------f------s~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 YD----------------F------SFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred hh----------------h------hhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 00 1 1122346899999999999987 555555443 35678899999999984
Q ss_pred CcccHHHHHHHHHHHHH
Q 002164 879 ARESIMHVLWETDRWLQ 895 (958)
Q Consensus 879 ~~~~~~~~~~~i~~fl~ 895 (958)
.....+.+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 344667778888884
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=136.98 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.+|+-+.++. .-+.|+++. .
T Consensus 159 WVlcvawsPDgk~iASG~~d---------------------------------g~I~lwdpktg~~--~g~~l~gH~--K 201 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKD---------------------------------GSIRLWDPKTGQQ--IGRALRGHK--K 201 (480)
T ss_pred EEEEEEECCCcchhhccccC---------------------------------CeEEEecCCCCCc--ccccccCcc--c
Confidence 34568999999999988775 5899999876442 234565543 4
Q ss_pred cccceeec-----CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wS-----PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+...+|- |.++++|-.+ ..+.+.+||+..|............ +.-+.|--+| +|+..+.+
T Consensus 202 ~It~Lawep~hl~p~~r~las~s---------kDg~vrIWd~~~~~~~~~lsgHT~~----VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSS---------KDGSVRIWDTKLGTCVRTLSGHTAS----VTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ceeEEeecccccCCCccceeccc---------CCCCEEEEEccCceEEEEeccCccc----eEEEEEcCCc-eEEecCCC
Confidence 78888885 5777777643 3668889999888877665544432 6778897665 45544222
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-------CCe-------eeecCC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-------DGT-------VKEIGP 330 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-------~g~-------~~~l~~ 330 (958)
... +++....+...... +.. ..-|-.+++ +|. ....++
T Consensus 268 rtI------------kvw~a~dG~~~r~l------kGH----------ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 268 RTI------------KVWRALDGKLCREL------KGH----------AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred ceE------------EEEEccchhHHHhh------ccc----------chheeeeeccchhhhhccccccccccCCChHH
Confidence 111 12222111110000 000 000111111 110 000000
Q ss_pred C-----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCccccCcccccccccCcce
Q 002164 331 P-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 331 ~-----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
. ..+ ....-..|++++-.++ +.++++|+.... ...+++.+ ..-+..
T Consensus 320 ~~~~Al~rY-~~~~~~~~erlVSgsD-------------d~tlflW~p~~~kkpi~rmtgH-------------q~lVn~ 372 (480)
T KOG0271|consen 320 EQKKALERY-EAVLKDSGERLVSGSD-------------DFTLFLWNPFKSKKPITRMTGH-------------QALVNH 372 (480)
T ss_pred HHHHHHHHH-HHhhccCcceeEEecC-------------CceEEEecccccccchhhhhch-------------hhheee
Confidence 0 000 1111122345655543 348999986521 22233322 233567
Q ss_pred eeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 404 ~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
+.|||||++|+-. +.+..|.+|+. .+|+....+-.+-..+..++||.|.+-|+..+.+.+ .++
T Consensus 373 V~fSPd~r~IASa-------------SFDkSVkLW~g--~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKv 435 (480)
T KOG0271|consen 373 VSFSPDGRYIASA-------------SFDKSVKLWDG--RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKV 435 (480)
T ss_pred EEECCCccEEEEe-------------ecccceeeeeC--CCcchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEE
Confidence 8999999988863 44556788885 345444444445556778999999998877765554 566
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.+.... ...-.......+|. +.|||||+.++.+.
T Consensus 436 w~V~tkK----l~~DLpGh~DEVf~------vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 436 WDVRTKK----LKQDLPGHADEVFA------VDWSPDGQRVASGG 470 (480)
T ss_pred EEeeeee----ecccCCCCCceEEE------EEecCCCceeecCC
Confidence 6665332 12222233455665 78999999987664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=134.20 Aligned_cols=269 Identities=13% Similarity=0.061 Sum_probs=158.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|++|++.+ + .....+. .........|+|||+.++.+.. ....|+++++.+++..+.......
T Consensus 11 ~~v~~~d~~t-~--~~~~~~~---~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT-L--EVTRTFP---VGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC-C--ceEEEEE---CCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 4788999854 2 1222332 2234567899999998766532 245799999998876553322221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|||+.++++.. ....|+++++
T Consensus 75 ---~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEECC
Confidence 346889999998876510 1235788888
Q ss_pred CCee-eecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~-~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+++. ..+........+.|+|||+.+++..... ..+..||.++.......... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5533 2332223456789999999998876431 24566787755432211100 23
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------ccccCceeeecCCceEEEE
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------~~~~~~~~~spDg~~l~~~ 473 (958)
...+.|+|||+.+++.. ...+.+++|++ ..+...+.+... ......+.|+|||+.++..
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV--ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc--CcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 35688999999887631 12456888986 223223333211 1112357899999987665
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
...+ .++.++|..++ +...... ....+.. ++|+|||++|+.... ....
T Consensus 225 ~~~~---~~i~v~d~~~~--~~~~~~~-~~~~~~~------~~~~~~g~~l~~~~~--------------------~~~~ 272 (300)
T TIGR03866 225 LGPA---NRVAVVDAKTY--EVLDYLL-VGQRVWQ------LAFTPDEKYLLTTNG--------------------VSND 272 (300)
T ss_pred cCCC---CeEEEEECCCC--cEEEEEE-eCCCcce------EEECCCCCEEEEEcC--------------------CCCe
Confidence 4322 24777777664 2222111 1112222 789999998876531 1225
Q ss_pred EEEEECCCCceEEEec
Q 002164 554 LDLFDINTGSKERIWE 569 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~ 569 (958)
|.+||+++++...-..
T Consensus 273 i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 273 VSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEECCCCcEEEEEE
Confidence 9999999988644433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=152.32 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=146.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.++..++..||..+....+.+..... ....|+||++||....+ . ..+....+..+.++||.|++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~g~s-----------~--~~y~~~~~~~~~~~g~~vv~- 134 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLTGGS-----------D--DSYVRHMLLRARSKGWRVVV- 134 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCCCCC-----------C--CHHHHHHHHHHHHCCCEEEE-
Confidence 34556777899888765554322111 11268999999953211 1 11111234456789999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEeccCC
Q 002164 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (958)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (958)
.+.+|+|.+... ..+.....+|+.++++++..+. ...++.++|+|+||.+++.++.++|+. +.+++++++.+
T Consensus 135 --~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 135 --FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred --EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 555677766432 2233456789999999998863 235899999999999999999999876 77888777654
Q ss_pred CCCC------CCC--C----cc---------------------c-----ccchh--h-----------hc-HHHHHhcCc
Q 002164 795 NRTL------TPF--G----FQ---------------------N-----EDRTL--W-----------EA-TSTYVEMSP 822 (958)
Q Consensus 795 ~~~~------~~~--~----~~---------------------~-----~~~~~--~-----------~~-~~~~~~~sp 822 (958)
+... ..+ . +. . ..... + .. .+.|...++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 00000 0 00 112344566
Q ss_pred ccccCCCCCCEEEEeeCCCCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH------HHHHHHHHHHH
Q 002164 823 FMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQ 895 (958)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~------~~~~~i~~fl~ 895 (958)
...+.++++|+|+++|++|+.+| .... ..+. .....+++++++++||.... +... -..+.+.+||.
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~~~~----~~~p~~~l~~~~~gGH~~~~-E~p~~~~~~~w~~~~i~~Fl~ 363 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPREDI----KANPNCLLIVTPSGGHLGWV-AGPEAPFGAPWTDPVVMEFLE 363 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcHhHH----hcCCCEEEEECCCcceeccc-cCCCCCCCCccHHHHHHHHHH
Confidence 67788999999999999999987 5433 2222 22345799999999997432 2211 13567889998
Q ss_pred HhhccC
Q 002164 896 KYCVSN 901 (958)
Q Consensus 896 ~~l~~~ 901 (958)
......
T Consensus 364 ~~~~~~ 369 (388)
T PLN02511 364 ALEEGK 369 (388)
T ss_pred HHHHhc
Confidence 887543
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-13 Score=135.10 Aligned_cols=130 Identities=26% Similarity=0.289 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHH
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV 818 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (958)
..+-+.+.++...+.+ ++++||+++|+|.||.||+.++.+.|..++++|+.+|..-....
T Consensus 86 s~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~------------------- 145 (216)
T PF02230_consen 86 SAERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-------------------
T ss_pred HHHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-------------------
Confidence 3444455555555544 89999999999999999999999999999999999986321100
Q ss_pred hcCcccccCC-CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 819 EMSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 819 ~~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
....... -++|++++||..|.++| ...+++.++.|+..+.++++..|++.||.+. .+.+..+.+||.++
T Consensus 146 ---~~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 146 ---LEDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKH 215 (216)
T ss_dssp ---CHCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred ---ccccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhh
Confidence 0000111 16899999999999999 9999999999999999999999999999985 45578889999886
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
+
T Consensus 216 ~ 216 (216)
T PF02230_consen 216 I 216 (216)
T ss_dssp -
T ss_pred C
Confidence 3
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=149.01 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=124.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||.+... ..|..+ ......+++.||.|++ .|.+|+|.+.... .......+|+.++
T Consensus 30 ~~~ivllHG~~~~~-----------~~~~~~-~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 30 GEAVIMLHGGGPGA-----------GGWSNY-YRNIGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred CCeEEEECCCCCch-----------hhHHHH-HHHHHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 36689999954211 111100 0123456778999999 5666788875431 1111234455444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC--CCCCC----------------------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFG---------------------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~~~~---------------------- 802 (958)
++.+ +.+++.++||||||.+++.++.++|++++++|++++..... .....
T Consensus 95 l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 95 MDAL------DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHHc------CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHH
Confidence 4432 45699999999999999999999999999999988642100 00000
Q ss_pred ----ccccc-------chhhh----cHH---HHHh---------cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 803 ----FQNED-------RTLWE----ATS---TYVE---------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 803 ----~~~~~-------~~~~~----~~~---~~~~---------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
..... ...|. .+. .+.. .+....+.++++|+|+++|++|..++ ++.+.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~ 246 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLL 246 (282)
T ss_pred HhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHH
Confidence 00000 00010 010 0100 01112356789999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.++ .++++++|++||... .+....+.+.+.+||.
T Consensus 247 ~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 247 WNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred HhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 7765 368899999999974 6667788888889885
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=142.80 Aligned_cols=194 Identities=14% Similarity=0.167 Sum_probs=124.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|+||++||..... ..| .... ...++||.|++ .+.+|+|.+.... .......+|+.+.
T Consensus 13 ~~~iv~lhG~~~~~-----------~~~----~~~~-~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGSG-----------SYW----APQL-DVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcch-----------hHH----HHHH-HHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 68899999964211 111 1122 33456899999 5566777764321 1234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-------------CC-----------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-------------FG----------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-------------~~----------- 802 (958)
++.+ +.+++.++||||||.+++.++.+.|++++++|.+++........ ..
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5443 34689999999999999999999999999999888753321000 00
Q ss_pred -c----ccccch-----------h-------hhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 803 -F----QNEDRT-----------L-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 803 -~----~~~~~~-----------~-------~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
+ ...... . ......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 0 000000 0 00001111123334567789999999999999998 888888887664
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
. .+++.++++||.+. .++...+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999974 4567778888888875
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-11 Score=125.61 Aligned_cols=211 Identities=18% Similarity=0.239 Sum_probs=122.5
Q ss_pred CCCCCceecCCCCEEEEEecC-----------CCCCchhcccccceeeceeecCCCCCcc-ceeeEeceeEEEccCCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRR-----------ALPPLEELARPEEKLAGLRIDGKCNTRS-RMSFYTGIGIHQLFPDGKL 176 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~dg~~ 176 (958)
.++..++|++||++|+-+... +...+-++.++...+.+..+.+...-+. +.+.++.+-++.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe------- 176 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE------- 176 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee-------
Confidence 367889999999999887654 4555667777777777777766543222 122222333322
Q ss_pred Cceeeecc-CC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC
Q 002164 177 GQEIEIQG-FP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 177 ~~~~~lt~-~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
|++..... +. +..-+...++||||++.+.+.. ...++++|-.+|+..-...... ...+.+-.+.||||
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPD 246 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecC---------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCC
Confidence 33333321 11 2237888999999999988653 6789999988888765544222 23444778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeee-------
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE------- 327 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~------- 327 (958)
++.|+..+.++.. +||+-....++......+.+. |..+-......+|..++++|...-
T Consensus 247 s~~~~T~SaDkt~------------KIWdVs~~slv~t~~~~~~v~---dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 247 STQFLTVSADKTI------------KIWDVSTNSLVSTWPMGSTVE---DQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred CceEEEecCCceE------------EEEEeeccceEEEeecCCchh---ceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 9999988554332 244333222211111000000 000000012334555555553322
Q ss_pred ----cCCC-ccccccccCCCCcEEEEEee
Q 002164 328 ----IGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 328 ----l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
+..+ ..++....||||++|+-.+-
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeecc
Confidence 2223 66788999999999887663
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=135.39 Aligned_cols=190 Identities=21% Similarity=0.174 Sum_probs=113.8
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCC--CCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPII--GEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~--G~G~ 728 (958)
|...||.|++... ++.|+||++||...... .|... .. ...+|+ +||+|+.+...... ....
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a~-----------~~~~~-s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSAE-----------DFAAG-SG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCHH-----------HHHhh-cC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 35899999999643221 11100 01 224554 79999986542110 0000
Q ss_pred cccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CC-cc
Q 002164 729 EEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG-FQ 804 (958)
Q Consensus 729 ~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~-~~ 804 (958)
.+.. ..........+...++++.++..+|++||++.|+|.||+|+..++..+|++|+++..++|+....... .. +.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 1100 11122345567788999999999999999999999999999999999999999999998863211110 00 00
Q ss_pred cccchhhhcHHHH-HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 805 NEDRTLWEATSTY-VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 805 ~~~~~~~~~~~~~-~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
......-..+... ....... ..-..|++|+||+.|..|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG--AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc--CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 0000000011100 0000000 0113599999999999998 88888888877653
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-13 Score=143.90 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=133.1
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+.+...+|..+... |...+ ++ + .|.||++||.+... ..| ......|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~--~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--D--GPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--C--CCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE
Confidence 345566665556544322 22222 11 1 46789999964211 011 1334456678999999
Q ss_pred cCCCCCCCCCCcccch---h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 718 GPTTPIIGEGDEEAND---R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.|.+|+|.+.... . ......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6667888774421 1 2344455555444432 3358999999999999999999999999999988753
Q ss_pred CCCCCC-------CCC-cccc------------cchhh---hcHHHH----------------Hhc---Cc---------
Q 002164 794 YNRTLT-------PFG-FQNE------------DRTLW---EATSTY----------------VEM---SP--------- 822 (958)
Q Consensus 794 ~~~~~~-------~~~-~~~~------------~~~~~---~~~~~~----------------~~~---sp--------- 822 (958)
...... .+. +... ....+ +....| ... .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 210000 000 0000 00000 000000 000 00
Q ss_pred --ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
...+.++++|+|+++|++|..+| ... +++.+.+... ..+++.+++++||... .+..+.+.+.+.+||.++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666665532 1134778999999974 566788888999998764
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=131.82 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=132.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh----HHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF----VEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~----~~~~~~D~~~ 745 (958)
-|+|+++||-|... ..+.. ....|+++||.|++ .|.+|+|.+..+... ......|+.+
T Consensus 44 gP~illlHGfPe~w--------------yswr~-q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPESW--------------YSWRH-QIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCccc--------------hhhhh-hhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 69999999976432 22221 23478999999999 778899999876542 3455667766
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC-CC--------------CCCCCccc-----
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RT--------------LTPFGFQN----- 805 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-~~--------------~~~~~~~~----- 805 (958)
.++.|- -+|+.++||+||+.+|..++..+|+++++.|+.+..+. .. +....++.
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 666653 36999999999999999999999999999999876433 00 00000000
Q ss_pred ------------------------------ccchhh---hcH-------------------HHHHhcCc--ccccCCCCC
Q 002164 806 ------------------------------EDRTLW---EAT-------------------STYVEMSP--FMSANKLKK 831 (958)
Q Consensus 806 ------------------------------~~~~~~---~~~-------------------~~~~~~sp--~~~~~~~~~ 831 (958)
.....| ++. +.+....+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000111 111 11111111 234556789
Q ss_pred CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|++++.|++|...+ +..-.+.+++.-.. ..+.++++|+||+.. .++.+++.+.++.||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44223333332221 246789999999874 677889999999999875
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=145.96 Aligned_cols=229 Identities=17% Similarity=0.095 Sum_probs=136.9
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
-.++..||..+.......+. .....|+||++||.+.. ....+....+..|+++||.|+.+++
T Consensus 34 ~~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~- 95 (324)
T PRK10985 34 QRLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF- 95 (324)
T ss_pred eEEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC-
Confidence 34566788776544322111 12236999999995311 0111222355678899999999555
Q ss_pred CCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEeccCCCCC
Q 002164 722 PIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRT 797 (958)
Q Consensus 722 ~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~ 797 (958)
+|+|.+.. ...+......|+..+++++.++.. ..+++++||||||.+++.++++.++ .++++|++++.++..
T Consensus 96 --rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~ 171 (324)
T PRK10985 96 --RGCSGEPNRLHRIYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLE 171 (324)
T ss_pred --CCCCCCccCCcceECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHH
Confidence 55554421 112222357899999999988632 3589999999999988888877644 378888888765421
Q ss_pred CC------CCC--c-------------------ccc---c-------chh-------------h-hcHHHHHhcCccccc
Q 002164 798 LT------PFG--F-------------------QNE---D-------RTL-------------W-EATSTYVEMSPFMSA 826 (958)
Q Consensus 798 ~~------~~~--~-------------------~~~---~-------~~~-------------~-~~~~~~~~~sp~~~~ 826 (958)
.. .+. + ... . ... + ...+.|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l 251 (324)
T PRK10985 172 ACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLL 251 (324)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHH
Confidence 00 000 0 000 0 000 0 011233344555667
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----cHHHHHHHHHHHHHHhh
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (958)
.++++|+|+++|++|..++ +.....+.+ ....+++++++++||...... ...-.-+.+.+||..++
T Consensus 252 ~~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 252 NQIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred hCCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 8899999999999999987 655444422 223578889999999743211 11223345788887765
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=137.08 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=133.6
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~ 729 (958)
..+++.+|+|.. .+.+|+||++||+... .......+..|+++||+|++++.++..+.+
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~-- 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-- 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC--
Confidence 468889999964 2359999999996321 111234566789999999997765432211
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEeccCCCC
Q 002164 730 EANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNR 796 (958)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~ 796 (958)
....+.|..++++|+.+. ..+|.++++++|||+||.+++.++.+.++ +|+++|.+.|+...
T Consensus 95 ------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 ------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred ------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 123345667777887752 23677899999999999999999998764 58888988886442
Q ss_pred CCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCC---------CCCCChH-HHHHHHHHHHhCCCcEE
Q 002164 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTM-QSDRFFNALKGHGALCR 866 (958)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~-~~~~~~~~l~~~g~~~~ 866 (958)
.... .. .+..+ .+.+ ..-++..|+|++++..|. ..| .. +-.++|++++. ++.
T Consensus 169 ~~~~------~~----~p~il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap--~~~~~~~f~~~~~~---~~~ 230 (313)
T PLN00021 169 SKGK------QT----PPPVL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAP--DGVNHAEFFNECKA---PAV 230 (313)
T ss_pred cccc------CC----CCccc-ccCc--ccccCCCCeEEEecCCCcccccccccccCC--CCCCHHHHHHhcCC---Cee
Confidence 2110 00 00000 1111 122367999999999763 222 33 34778887655 578
Q ss_pred EEEeCCCCccCCCc----------------------ccHHHHHHHHHHHHHHhhccCC
Q 002164 867 LVILPFESHGYAAR----------------------ESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 867 ~~~~p~~~H~~~~~----------------------~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
+.+.++++|.-.-. ..+..+...+..||..+|.+..
T Consensus 231 ~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 231 HFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 88899999963211 1123344568999999997644
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=118.67 Aligned_cols=272 Identities=14% Similarity=0.147 Sum_probs=179.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|.+|.+.+ | .-.+.+. +++ ..++....+||++.||... ..+|.++|+.++.+.++......
T Consensus 20 hTIRfWqa~t-G--~C~rTiq-h~d-sqVNrLeiTpdk~~LAaa~----------~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT-G--ICSRTIQ-HPD-SQVNRLEITPDKKDLAAAG----------NQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc-C--eEEEEEe-cCc-cceeeEEEcCCcchhhhcc----------CCeeEEEEccCCCCCceeEEecc--
Confidence 6899999865 2 2234443 332 3688899999999998853 77899999999887665443331
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
+..+..+.|--||++++..+ .+ +.-.||.+. .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs---------------------eD--------------------------gt~kIWdlR-~ 114 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS---------------------ED--------------------------GTVKIWDLR-S 114 (311)
T ss_pred CCceEEEEEeecCeEEEecC---------------------CC--------------------------ceEEEEecc-C
Confidence 12267888999999999661 11 222344332 4
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccC
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
-..+++... ..+..+...|+-..|+.... .+.|++||+..... .+|...+ ...
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~------------~~~ 169 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPED------------DTS 169 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCC------------Ccc
Confidence 444455444 67888899998777765542 34899999986532 3332211 134
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE------EeeccccCceeeecCCceEEEEE
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL------HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
++++...|||+.++-. ..++..|+|++ +.......+ ...++.+....+|||+++|+..+
T Consensus 170 i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 5789999999988774 55778899996 333322222 23344556689999999999887
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeE
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (958)
.+++ ..||..+-- .+.....+....+++. -.||.||++|+....+ ...
T Consensus 235 sdkt--v~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd---------------------~~~ 282 (311)
T KOG0315|consen 235 SDKT--VKIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD---------------------HTA 282 (311)
T ss_pred CCce--EEEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------Cce
Confidence 7665 456655432 1333444555556665 6799999999877632 257
Q ss_pred EEEECCCCceEEEecCC
Q 002164 555 DLFDINTGSKERIWESD 571 (958)
Q Consensus 555 ~~~dl~~g~~~~l~~~~ 571 (958)
.+|++..++..+.+.+.
T Consensus 283 rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eecccccCceeeecCCc
Confidence 78999999888877654
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-12 Score=137.09 Aligned_cols=209 Identities=18% Similarity=0.124 Sum_probs=126.7
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|..+.....-+. ..|+||++||.+... ..| ......| +++|.|+. .+.+|+
T Consensus 13 ~~~~~~~~~~~g~~--------~~~~vv~~hG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~ 65 (278)
T TIGR03056 13 VGPFHWHVQDMGPT--------AGPLLLLLHGTGAST-----------HSW----RDLMPPL-ARSFRVVA---PDLPGH 65 (278)
T ss_pred ECCEEEEEEecCCC--------CCCeEEEEcCCCCCH-----------HHH----HHHHHHH-hhCcEEEe---ecCCCC
Confidence 36777654333211 147899999953211 111 1223333 45799999 566678
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC----
Q 002164 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (958)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (958)
|.+.... .......+|+.++++.+ +.++++|+||||||.+++.++.+.|++++++|++++.+.....
T Consensus 66 G~S~~~~~~~~~~~~~~~~l~~~i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 139 (278)
T TIGR03056 66 GFTRAPFRFRFTLPSMAEDLSALCAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGT 139 (278)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccccccccccc
Confidence 8765432 22345555555544332 2357899999999999999999999999989888764331100
Q ss_pred --C----------CC-------ccccc--c-------hhhhc--HHHHH-----------------hcC---cccccCCC
Q 002164 800 --P----------FG-------FQNED--R-------TLWEA--TSTYV-----------------EMS---PFMSANKL 829 (958)
Q Consensus 800 --~----------~~-------~~~~~--~-------~~~~~--~~~~~-----------------~~s---p~~~~~~~ 829 (958)
+ +. ..... . ..+.. ...+. .+. ....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 219 (278)
T TIGR03056 140 LFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRI 219 (278)
T ss_pred ccchhhHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccC
Confidence 0 00 00000 0 00000 00000 000 11235678
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|+|+++|++|..+| ....+++.+.+.. .+++.+|++||.+. .+....+.+.+.+||+
T Consensus 220 ~~P~lii~g~~D~~vp--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVP--PDESKRAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred CCCEEEEEeCCCcccC--HHHHHHHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 8999999999999998 7877777665543 58889999999875 4556778888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=141.69 Aligned_cols=248 Identities=15% Similarity=0.096 Sum_probs=153.6
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.|+..+++.||..|....+.+.. ......+.|+||++||....+..+. ...+ ....+..|+++||
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~~w~---~~~~------~~sla~~La~~Gy 108 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGDAWF---LNSP------EQSLGFILADHGF 108 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccccee---ecCc------ccchHHHHHhCCC
Confidence 3457789999999999999877664322 1111123578999999653322211 0000 1123446889999
Q ss_pred EEEEcCCCCCCC-CCCcc---c-----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--
Q 002164 714 AILGGPTTPIIG-EGDEE---A-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-- 782 (958)
Q Consensus 714 ~vl~~~~~~~~G-~G~~~---~-----~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-- 782 (958)
.|+.+|.||... +|... . ...+.+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 109 dV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~ 184 (395)
T PLN02872 109 DVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVV 184 (395)
T ss_pred CcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHH
Confidence 999966665321 12111 1 11222334579999999998752 36899999999999998555 4555
Q ss_pred -ceeEEEEeccCCCCCC-----------------------CCC-----------------------------Ccccc---
Q 002164 783 -LFCCGIARSGAYNRTL-----------------------TPF-----------------------------GFQNE--- 806 (958)
Q Consensus 783 -~~~a~v~~~~~~~~~~-----------------------~~~-----------------------------~~~~~--- 806 (958)
+++++++.+|+..... ..+ ++...
T Consensus 185 ~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~ 264 (395)
T PLN02872 185 EMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNA 264 (395)
T ss_pred HHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccch
Confidence 4666666665421000 000 00000
Q ss_pred -----------cc--------------------h---hhhcHHHHHhc-CcccccCCC--CCCEEEEeeCCCCCCCCChH
Q 002164 807 -----------DR--------------------T---LWEATSTYVEM-SPFMSANKL--KKPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 807 -----------~~--------------------~---~~~~~~~~~~~-sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~ 849 (958)
.+ . ...+...|... -|...+.++ ++|+++++|++|..++ +.
T Consensus 265 ~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~~ 342 (395)
T PLN02872 265 SRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--VT 342 (395)
T ss_pred hhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--HH
Confidence 00 0 00011122222 345677888 5799999999999998 88
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHhhcc
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
..+++.+.+... .++..+++.+|. +...+..+.+++.|++||+++...
T Consensus 343 dv~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 343 DVEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred HHHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 888888877542 578889999997 445677788999999999987643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=130.12 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=167.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+.|+|||+.|++...+ +.+.+|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 57789999999999988754 4789999854 1 12333432 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+|+++.|++... ...|++++..+++........... +..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~------- 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTSY----VSSVAFSPDGRILSSSS------- 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCCc----EEEEEEcCCCCEEEEec-------
Confidence 5668999999988888542 568889998875433322222211 66899999988777651
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++.. .+... ..+..+.|+|+++.|
T Consensus 113 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 113 ------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 1345778887 56433 33323 567889999998887
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+.... .+.+.+||+..+.. ..+... ...+..+.|+|||+.+++.
T Consensus 151 ~~~~~-------------~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~--------- 195 (289)
T cd00200 151 ASSSQ-------------DGTIKLWDLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSS--------- 195 (289)
T ss_pred EEEcC-------------CCcEEEEEccccccceeEecC-------------ccccceEEECCCcCEEEEe---------
Confidence 76652 23899999984433 222211 1245789999999888774
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+..+.+.+|+. ..+.....+......+..+.|+|++..++... .+ ..++.++...+ ............
T Consensus 196 ----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---~~i~i~~~~~~--~~~~~~~~~~~~ 263 (289)
T cd00200 196 ----SSDGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-ED---GTIRVWDLRTG--ECVQTLSGHTNS 263 (289)
T ss_pred ----cCCCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc-CC---CcEEEEEcCCc--eeEEEccccCCc
Confidence 33567888985 22333333334455677899999966655543 22 23555565543 222222222222
Q ss_pred ccCCCCCCceEeccCCceEEEEe
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.. +.|+|+|+.|+...
T Consensus 264 i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 264 VTS------LAWSPDGKRLASGS 280 (289)
T ss_pred EEE------EEECCCCCEEEEec
Confidence 222 78999998877665
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=142.11 Aligned_cols=221 Identities=13% Similarity=0.143 Sum_probs=133.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH---HCCcEEEEcC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILGGP 719 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~vl~~~ 719 (958)
.+.+..|.+++.....|++. .+.|.||++||.+.... .| .......|+ +++|.|++
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s~~-----------~W---~~~~~~~L~~~~~~~yrVia-- 237 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISSSA-----------FW---TETLFPNFSDAAKSTYRLFA-- 237 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCccHH-----------HH---HHHHHHHHHHHhhCCCEEEE--
Confidence 44455678898888888641 12467899999642110 11 111112333 47999999
Q ss_pred CCCCCCCCCcccchh--h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGEGDEEANDR--F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~--~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
.|.+|+|.+..... + .....+|+. ..+.+. .+.+++.++||||||.+++.++.++|++++++|++++....
T Consensus 238 -~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~ 311 (481)
T PLN03087 238 -VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYP 311 (481)
T ss_pred -ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccc
Confidence 56667887754321 1 223333332 123332 23358999999999999999999999999999998864321
Q ss_pred CCC---------------C-C---Ccccc--------cc----------hhhhcH----------HHHH----hc--Ccc
Q 002164 797 TLT---------------P-F---GFQNE--------DR----------TLWEAT----------STYV----EM--SPF 823 (958)
Q Consensus 797 ~~~---------------~-~---~~~~~--------~~----------~~~~~~----------~~~~----~~--sp~ 823 (958)
... . + .+... .. ..|+.. ..+. .. .+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 391 (481)
T PLN03087 312 VPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAA 391 (481)
T ss_pred cccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhh
Confidence 100 0 0 00000 00 001100 0000 00 000
Q ss_pred --------------------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002164 824 --------------------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (958)
Q Consensus 824 --------------------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 883 (958)
....++++|+|++||++|..+| ++.++.+.+.+.. .+++++|++||.....+..
T Consensus 392 ~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p 465 (481)
T PLN03087 392 WHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQ 465 (481)
T ss_pred HHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCH
Confidence 0112588999999999999998 8888888777654 5899999999986434566
Q ss_pred HHHHHHHHHHHHH
Q 002164 884 MHVLWETDRWLQK 896 (958)
Q Consensus 884 ~~~~~~i~~fl~~ 896 (958)
..+.+.+.+|...
T Consensus 466 ~~fa~~L~~F~~~ 478 (481)
T PLN03087 466 KEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHhhc
Confidence 7777788877643
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=134.27 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=123.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (958)
.|.||++||.+... ..| ...+..| +.+|.|+. .|.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58899999964211 111 1223333 46799999 5666788765432 234566778888777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CCCCC-------------CCCccccc--chh--
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT-------------PFGFQNED--RTL-- 810 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~-------------~~~~~~~~--~~~-- 810 (958)
++ ..+++.++||||||.+++.++.+.|++++++|.+++.. ..... ........ ...
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 64 33579999999999999999999999999999875321 11000 00000000 000
Q ss_pred --------------------hh--cH---HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 002164 811 --------------------WE--AT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (958)
Q Consensus 811 --------------------~~--~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (958)
|. .+ ..+........+.++++|+|+++|++|..++ ....+.+.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 00 0111111122345678999999999999987 666666655543 36
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 866 ~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++.+++++||... .+....+.+.+.+||..
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999864 56677788889998865
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-13 Score=139.38 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=119.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (958)
.|+||++||.+... ..| ...+.. .++||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 13 ~~~li~~hg~~~~~-----------~~~----~~~~~~-l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTDL-----------RMW----DPVLPA-LTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccch-----------hhH----HHHHHH-hhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999953110 111 122333 457999999 5666777764332 12344555555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CC----------C--------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF----------G-------------- 802 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~----------~-------------- 802 (958)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+ .
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 433 3468999999999999999999999999999887754321110 00 0
Q ss_pred --cccccch---hhh------cH-------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 803 --FQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 803 --~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+...++.+.++ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000000 000 00 0011112233456788999999999999998 777777766654 3
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+++++|+++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 58889999999874 455666677777775
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=143.18 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=156.4
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+....++++++||++|.+.+|+|++ .++.|+++..+-.|....+.. .+ ... ........|+++||+|+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~~---~~--~~~--~~~p~~~~~aa~GYavV 84 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNGT---FG--PQL--SALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccccccc---Cc--chh--hcccccceeecCceEEE
Confidence 5567789999999999999999986 356999999884443322100 00 000 00000126899999999
Q ss_pred EcCCCCCCCCCCcccchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
. -|.+|.|.|++.-.... .+.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..|
T Consensus 85 ~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 85 N---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred E---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 9 55667777777543333 48999999999999999987 6999999999999999999999999999999888765
Q ss_pred CCCCC--------------CC-----c------cc-----------------------ccchhhh------c--H-HHHH
Q 002164 796 RTLTP--------------FG-----F------QN-----------------------EDRTLWE------A--T-STYV 818 (958)
Q Consensus 796 ~~~~~--------------~~-----~------~~-----------------------~~~~~~~------~--~-~~~~ 818 (958)
..... |. . .. .+..+|. . . ..|.
T Consensus 161 ~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~ 240 (563)
T COG2936 161 RYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWR 240 (563)
T ss_pred ccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhh
Confidence 32110 00 0 00 0000010 0 0 1233
Q ss_pred hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-----HHHHHHHHHHH
Q 002164 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDRW 893 (958)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~-----~~~~~~~i~~f 893 (958)
+.+-.....++++|+|++.|-.|.. ...+.++|+.++.. +..+++=|- .|....... .....+.-.+|
T Consensus 241 ~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~ 313 (563)
T COG2936 241 RGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDF 313 (563)
T ss_pred ccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhh
Confidence 3344556778999999999999975 35567788877764 456666563 554321111 23334445556
Q ss_pred HHHhhc
Q 002164 894 LQKYCV 899 (958)
Q Consensus 894 l~~~l~ 899 (958)
|..++.
T Consensus 314 l~~~~~ 319 (563)
T COG2936 314 LDAYLD 319 (563)
T ss_pred hhHhhh
Confidence 655554
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=138.24 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=122.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (958)
|.||++||.+..+ ..|. .....|+.+ |.|++ .|.+|+|.+.... ..+....+
T Consensus 30 ~~vlllHG~~~~~-----------~~w~----~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHWR----KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHHH----HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6789999964321 1111 234456655 68998 6667888875432 12344455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---CCC-CCc------cc---c--
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~-~~~------~~---~-- 806 (958)
|+.+.++.+ + .+++.++||||||.+++.++.++|++++++|++++..... ... +.. .. .
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 555555433 2 2589999999999999999999999999999988643110 000 000 00 0
Q ss_pred ---------c-----chh----hhc-----H----------------HHHHh---cC----cccccCCCCCCEEEEeeCC
Q 002164 807 ---------D-----RTL----WEA-----T----------------STYVE---MS----PFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 807 ---------~-----~~~----~~~-----~----------------~~~~~---~s----p~~~~~~~~~P~Lii~G~~ 840 (958)
. ... +.. . ..+.. .. ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 00000 00 1123567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|..+| ...++.+.+.. ...++++++++||... .+....+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77666643322 2358899999999874 677788899999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-11 Score=128.22 Aligned_cols=245 Identities=13% Similarity=0.050 Sum_probs=146.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~~ 189 (958)
...+.|||||+.++.+... + ..|++|++.+ +.. +.+. .+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~----------------------~----------~~v~~~d~~~----~~~~~~~~---~~~ 73 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD----------------------S----------DTIQVIDLAT----GEVIGTLP---SGP 73 (300)
T ss_pred CCceEECCCCCEEEEEECC----------------------C----------CeEEEEECCC----CcEEEecc---CCC
Confidence 4578999999987655432 1 3688998754 332 2232 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......|+|||+.++.+.. ....|+++|+.+++.......... ...++|+|||+.+++...
T Consensus 74 ~~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------ 134 (300)
T TIGR03866 74 DPELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------ 134 (300)
T ss_pred CccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec------
Confidence 3567899999997766431 234799999987654332221111 457899999999887611
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~ 347 (958)
....++.++. +++... +........+.|+|||++|+
T Consensus 135 ------------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 135 ------------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW 172 (300)
T ss_pred ------------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence 0112444566 553322 22223345678999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.+++..
T Consensus 173 ~~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~--------- 225 (300)
T TIGR03866 173 VSSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL--------- 225 (300)
T ss_pred EEcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc---------
Confidence 77532 34899999986543 3333210 00000 001234688999999865521
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.+.+|+. .+++..........+..+.|+|||++|+.+...+ ..|.++|+.++
T Consensus 226 ---~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 226 ---GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred ---CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 22446888885 4444433323334567899999999987664333 35778887775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-12 Score=134.21 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=133.4
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.+..... . ..|.||++||.+... ..| ......| +.+|.|++ .|.+|+
T Consensus 9 ~~~~~~~~~~~~~~------~-~~~plvllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPGK------E-GLTPLLIFNGIGANL-----------ELV----FPFIEAL-DPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecCC------C-CCCcEEEEeCCCcch-----------HHH----HHHHHHh-ccCceEEE---ECCCCC
Confidence 37777776554211 1 135688899953211 111 1223333 45799999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC------
Q 002164 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (958)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------ 798 (958)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 12455666776666664 235799999999999999999999999999999986542110
Q ss_pred -----CC-CCcccc------cchhh-----hcHH----------------HHH------hcCcccccCCCCCCEEEEeeC
Q 002164 799 -----TP-FGFQNE------DRTLW-----EATS----------------TYV------EMSPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 799 -----~~-~~~~~~------~~~~~-----~~~~----------------~~~------~~sp~~~~~~~~~P~Lii~G~ 839 (958)
.. ..+... ..... .+++ .+. .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 00000 0000 000 011123357889999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+|..+| +..+.++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.-
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhh
Confidence 999998 8888888776643 47778886 99864 5667888899999998764
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=138.77 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=127.0
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.+...+|.+++...+-++ + .+.||++||++.... .......+..++|.|++ .|
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 455557887765443211 1 245788999753210 01122234457899999 56
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC-----
Q 002164 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (958)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~----- 797 (958)
.+|+|.+............|+.+.+..+.+. .+.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 6678877543221111223333334444443 233589999999999999999999999999988876532100
Q ss_pred --------CCC-----C--Ccccccc------------------------hh---hhc----------------HH---H
Q 002164 798 --------LTP-----F--GFQNEDR------------------------TL---WEA----------------TS---T 816 (958)
Q Consensus 798 --------~~~-----~--~~~~~~~------------------------~~---~~~----------------~~---~ 816 (958)
..+ + ....... .. |.. +. .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0 0000000 00 000 00 0
Q ss_pred HHh-----------cC----cccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 817 ~~~-----------~s----p~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
+.. .+ -...+.++ ++|+|++||++|..+| +..+.++++.+.. .++++++++||....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~gH~~~~~ 292 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFPE----AELKVTNNAGHSAFDP 292 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCCC----CEEEEECCCCCCCCCh
Confidence 000 00 01233456 5899999999999998 8888888877643 5888999999997533
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 002164 881 ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (958)
...+.+.+|+..+|
T Consensus 293 ----~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 293 ----NNLAALVHALETYL 306 (306)
T ss_pred ----HHHHHHHHHHHHhC
Confidence 34577777777664
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=134.29 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=115.2
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
....|++.||.|++ .|.+|+|.+.... .......+|+.+.++.+ + + .+++.++||||||.+++.++.++
T Consensus 22 ~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~ 93 (255)
T PLN02965 22 LATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL---P-P-DHKVILVGHSIGGGSVTEALCKF 93 (255)
T ss_pred HHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc---C-C-CCCEEEEecCcchHHHHHHHHhC
Confidence 34567788999999 6667888775332 12455566666666543 1 1 14899999999999999999999
Q ss_pred CCceeEEEEeccCC---CCC-CC-----------CCCc--ccc---c-------chhh-----h--cHH--HH--Hhc--
Q 002164 781 PHLFCCGIARSGAY---NRT-LT-----------PFGF--QNE---D-------RTLW-----E--ATS--TY--VEM-- 820 (958)
Q Consensus 781 p~~~~a~v~~~~~~---~~~-~~-----------~~~~--~~~---~-------~~~~-----~--~~~--~~--~~~-- 820 (958)
|++++++|.+++.. ... .. .+.+ ... . .... . ..+ .+ ...
T Consensus 94 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (255)
T PLN02965 94 TDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRP 173 (255)
T ss_pred chheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 99999999887641 100 00 0000 000 0 0000 0 000 00 000
Q ss_pred Ccc----------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 821 SPF----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 821 sp~----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
.+. ..+.++++|+|+++|++|..+| +..++.+.+.+.. .++++++++||+.. .+..+.+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~~~----a~~~~i~~~GH~~~-~e~p~~v~~~l 246 (255)
T PLN02965 174 APVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENWPP----AQTYVLEDSDHSAF-FSVPTTLFQYL 246 (255)
T ss_pred CCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhCCc----ceEEEecCCCCchh-hcCHHHHHHHH
Confidence 000 1223588999999999999998 8877777766554 48889999999975 56777888888
Q ss_pred HHHHHH
Q 002164 891 DRWLQK 896 (958)
Q Consensus 891 ~~fl~~ 896 (958)
.+|++.
T Consensus 247 ~~~~~~ 252 (255)
T PLN02965 247 LQAVSS 252 (255)
T ss_pred HHHHHH
Confidence 888765
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=131.37 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---------CCCccccc--chh
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED--RTL 810 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---------~~~~~~~~--~~~ 810 (958)
-++.|++||++++.+++++|+|+|.|.||-+|+.+|++.| .++++|+++|..-.... ++.+.... ...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4678999999999999999999999999999999999996 79999999874221110 00000000 000
Q ss_pred hhcH------HHHH------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCcc
Q 002164 811 WEAT------STYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (958)
Q Consensus 811 ~~~~------~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~p~~~H~ 876 (958)
+... ..+. .....-.++++++|+|+++|++|...|. ...+..+.++|+..|.+ ++++.||++||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS-~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPS-SEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-H-HHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccch-HHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 0000 0000 0011224667899999999999999872 33456788889988865 889999999998
Q ss_pred CCCc---------------------------ccHHHHHHHHHHHHHHhhc
Q 002164 877 YAAR---------------------------ESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 877 ~~~~---------------------------~~~~~~~~~i~~fl~~~l~ 899 (958)
+..+ ....+...++++||+++|.
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6321 0235677889999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-12 Score=137.73 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=122.4
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..+..|+++||.|+++| .+|.|.+............|+.++++++.++. ..+++.++|||+||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D---~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLID---WGYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEe---CCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 46778999999999954 45555543333333333456889999998874 33589999999999999999999999
Q ss_pred ceeEEEEeccCCCCCCCC-----C-------------Cccc------------ccchhh----------hcHH---HHH-
Q 002164 783 LFCCGIARSGAYNRTLTP-----F-------------GFQN------------EDRTLW----------EATS---TYV- 818 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~-----~-------------~~~~------------~~~~~~----------~~~~---~~~- 818 (958)
+++++|+.+++.+..... + +... .....| .+++ .|.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999998876632110 0 0000 000000 0100 000
Q ss_pred --h--cC--c-----------------------------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCC
Q 002164 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (958)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (958)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01245678999999999999998 8888888887654 4
Q ss_pred cEEEEEeCCCCccC-C-CcccHHHHHHHHHHHHHH
Q 002164 864 LCRLVILPFESHGY-A-ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 864 ~~~~~~~p~~~H~~-~-~~~~~~~~~~~i~~fl~~ 896 (958)
.++++++++ ||.. . ......+++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 7764 2 233457888999999875
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=122.43 Aligned_cols=129 Identities=23% Similarity=0.213 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHH
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (958)
.....+.++++.+.++..+|.+|++++|+|.|+.+++.+..+.|+.++++|+.+|.+-....
T Consensus 78 ~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~------------------ 139 (207)
T COG0400 78 LETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE------------------ 139 (207)
T ss_pred HHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc------------------
Confidence 44556667777777777799999999999999999999999999999999999986432110
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..-..-.+|+|++||+.|++|| ...+.++.+.|+..|..++...++ .||.+. .+.++.+.+|+...
T Consensus 140 ------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~ 205 (207)
T COG0400 140 ------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANT 205 (207)
T ss_pred ------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhc
Confidence 0011225899999999999999 999999999999999999999999 699985 34467777888765
Q ss_pred h
Q 002164 898 C 898 (958)
Q Consensus 898 l 898 (958)
+
T Consensus 206 ~ 206 (207)
T COG0400 206 L 206 (207)
T ss_pred c
Confidence 3
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=138.33 Aligned_cols=204 Identities=17% Similarity=0.118 Sum_probs=122.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHH-H
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAE-A 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~-~ 745 (958)
.|+||++||.+... ..| ......|+ ++|.|++ .|.+|+|.+..... ........+. +
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58899999964211 001 12233444 4699999 66667777644321 1111111222 2
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-C-----------C-----------C
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~-----------~-----------~ 802 (958)
+.+|+.+. +.+++.++||||||++++.++.++|++++++|+.++..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 23344333 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred ccc--------c------cchh-------h-------hcHHHH---H-----------------------hcCcc-cccC
Q 002164 803 FQN--------E------DRTL-------W-------EATSTY---V-----------------------EMSPF-MSAN 827 (958)
Q Consensus 803 ~~~--------~------~~~~-------~-------~~~~~~---~-----------------------~~sp~-~~~~ 827 (958)
+.. . .... . +....+ . ...+. ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 000 0 0000 0 000000 0 01111 2356
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++++|+|+++|++|..++ ....++.+.+ +.+++++++|++||... .++...+.+.+.+|++.++....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 788999999999998653 5555554433 34578999999999864 66778889999999999987543
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-12 Score=134.91 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=129.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++...+ + . .|.||++||.+.... .| ...+..|++++ .|++ .|.+|+|
T Consensus 15 ~g~~i~y~~~---G-----~--g~~vvllHG~~~~~~-----------~w----~~~~~~L~~~~-~via---~D~~G~G 65 (295)
T PRK03592 15 LGSRMAYIET---G-----E--GDPIVFLHGNPTSSY-----------LW----RNIIPHLAGLG-RCLA---PDLIGMG 65 (295)
T ss_pred CCEEEEEEEe---C-----C--CCEEEEECCCCCCHH-----------HH----HHHHHHHhhCC-EEEE---EcCCCCC
Confidence 7777765443 1 1 367888999642211 11 13345666675 8998 5666888
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-CCCC--
Q 002164 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TPFG-- 802 (958)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~~~-- 802 (958)
.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+++++..... ..+.
T Consensus 66 ~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~ 139 (295)
T PRK03592 66 ASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPA 139 (295)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchh
Confidence 775432 12345556665555543 235899999999999999999999999999999886422100 0000
Q ss_pred -------cc--c--c------c---chhhh-------cH---HHHH-----------------hcCc-------------
Q 002164 803 -------FQ--N--E------D---RTLWE-------AT---STYV-----------------EMSP------------- 822 (958)
Q Consensus 803 -------~~--~--~------~---~~~~~-------~~---~~~~-----------------~~sp------------- 822 (958)
+. . . . ...+. .+ ..+. ...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (295)
T PRK03592 140 VRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEE 219 (295)
T ss_pred HHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhH
Confidence 00 0 0 0 00000 00 0000 0000
Q ss_pred -ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 823 -FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 823 -~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
...+.++++|+|+++|++|..++ +....++...+.. ..++.+++++||... .+....+.+.+.+|+.+..
T Consensus 220 ~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 220 YAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred hHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 01235678999999999999985 5555555544332 368889999999985 5677888999999998753
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=133.35 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=115.0
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH-HHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a-v~~ 749 (958)
|+||++||.+... ..| ......|+ +||.|+. .+.+|+|.+..........++++... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6789999953211 111 13344555 8999999 55667777754322112223333332 444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-----CC--------cccc----------
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG--------FQNE---------- 806 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~--------~~~~---------- 806 (958)
+.+. .+.+++.++|||+||.+++.++.++|+.++++++.++........ +. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4443 245689999999999999999999999999999987653311100 00 0000
Q ss_pred ----cch---hhhc-----------------HHHHH------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 807 ----DRT---LWEA-----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 807 ----~~~---~~~~-----------------~~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
... .... ...+. ..+....+.++++|+|+++|++|..++ ....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 000 0000 00000 011223456789999999999997643 33333
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+......++++++|++||.+. .++...+...+.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334578999999999874 455567777788776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=122.24 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=106.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
|.||++||... ++..+. .......+.+ .+|.|++++. +|++ . +..+.++
T Consensus 2 p~illlHGf~s-----------s~~~~~--~~~~~~~l~~~~~~~~v~~~dl---~g~~---------~----~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFNS-----------SPRSAK--ATLLKNWLAQHHPDIEMIVPQL---PPYP---------A----DAAELLE 52 (190)
T ss_pred CeEEEECCCCC-----------CcchHH--HHHHHHHHHHhCCCCeEEeCCC---CCCH---------H----HHHHHHH
Confidence 67999999531 111111 0112234444 3799999544 4542 1 2333444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC------C-CCcccccchhh--hcHHHHHh
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------P-FGFQNEDRTLW--EATSTYVE 819 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~------~-~~~~~~~~~~~--~~~~~~~~ 819 (958)
.+.++. +.+++.++|+|+||++++.++.+.|. + +|+++|..+.... . ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 444432 23589999999999999999999973 3 4667776552100 0 00000001111 11122222
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
..+.. +. ...|++++||++|..|| +.++.+++++ +++++++|++|.+... +.+.+.+.+|+.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 33222 33 66789999999999999 9999999984 3556789999999544 667888888874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-11 Score=112.78 Aligned_cols=270 Identities=9% Similarity=0.058 Sum_probs=170.6
Q ss_pred CCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhh
Q 002164 217 SKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ 296 (958)
Q Consensus 217 ~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (958)
....|..|.+.+|...+-...++.. +..+..+||++.|+.+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsq----VNrLeiTpdk~~LAaa----------------------------------- 58 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQ----VNRLEITPDKKDLAAA----------------------------------- 58 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccc----eeeEEEcCCcchhhhc-----------------------------------
Confidence 4667888899999988877777654 7788999999999976
Q ss_pred hhccCchhhhHHHHhhcceEEEEEc-CCeeeecC---CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 297 DLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG---PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~---~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
+..+|-++|+ ++...++. .. .++..+.|.-||+|++..+.+ +.+.||
T Consensus 59 ---------------~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~kIW 110 (311)
T KOG0315|consen 59 ---------------GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVKIW 110 (311)
T ss_pred ---------------cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEEEE
Confidence 4556778888 66543332 22 778899999999999887743 589999
Q ss_pred eccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE
Q 002164 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL 451 (958)
Q Consensus 372 d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l 451 (958)
|+..-...++...+ ..+..+...|+...|+.- +..+.|++||+ .+..-..++
T Consensus 111 dlR~~~~qR~~~~~-------------spVn~vvlhpnQteLis~-------------dqsg~irvWDl--~~~~c~~~l 162 (311)
T KOG0315|consen 111 DLRSLSCQRNYQHN-------------SPVNTVVLHPNQTELISG-------------DQSGNIRVWDL--GENSCTHEL 162 (311)
T ss_pred eccCcccchhccCC-------------CCcceEEecCCcceEEee-------------cCCCcEEEEEc--cCCcccccc
Confidence 99864444443332 223566777877666652 55678999996 222233444
Q ss_pred -EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeee
Q 002164 452 -HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 452 -~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
...+..+.++...|||+.|+...+.++ .-+|.+--+........+........+. ....+|||+++|+..+.+
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~--cyvW~l~~~~~~s~l~P~~k~~ah~~~i----l~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGN--CYVWRLLNHQTASELEPVHKFQAHNGHI----LRCLLSPDVKYLATCSSD 236 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCcc--EEEEEccCCCccccceEhhheecccceE----EEEEECCCCcEEEeecCC
Confidence 445566788999999999987755543 3344443322111222222222222121 115689999999887632
Q ss_pred ccCCCcEEEEccCCCCCCCCCCeEEEEECCCC-ceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCc
Q 002164 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (958)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (958)
..+++|+.++- +......+..+ |. . +.+||.||.+|+ +.++. .
T Consensus 237 ---------------------ktv~iwn~~~~~kle~~l~gh~r-Wv---W-------dc~FS~dg~Ylv-Tassd---~ 280 (311)
T KOG0315|consen 237 ---------------------KTVKIWNTDDFFKLELVLTGHQR-WV---W-------DCAFSADGEYLV-TASSD---H 280 (311)
T ss_pred ---------------------ceEEEEecCCceeeEEEeecCCc-eE---E-------eeeeccCccEEE-ecCCC---C
Confidence 25888988776 44443333322 22 1 367899987554 44443 2
Q ss_pred eEEEEECCCCCeeE
Q 002164 610 QYYIQSWPDKKSCQ 623 (958)
Q Consensus 610 ~~~~~d~~~g~~~~ 623 (958)
...+++++.++..+
T Consensus 281 ~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 281 TARLWDLSAGKEVR 294 (311)
T ss_pred ceeecccccCceee
Confidence 34566777776443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-11 Score=114.81 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=171.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCC-CCC-ceeeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDG-KLG-QEIEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg-~~~-~~~~lt~~~~ 187 (958)
++.++++.+.+..+++...+ + ..+.+|++..|. ..| ..++++++.
T Consensus 17 ~Vt~la~~~~~~~~l~sasr----------------------D----------k~ii~W~L~~dd~~~G~~~r~~~GHs- 63 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR----------------------D----------KTIIVWKLTSDDIKYGVPVRRLTGHS- 63 (315)
T ss_pred eEEEEEeecCCCceEEEccc----------------------c----------eEEEEEEeccCccccCceeeeeeccc-
Confidence 45567777777777766553 1 367888886553 222 356777643
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
-.+.....|+||++.+-.+ -...|.+||+++|+.++...++... +-++++++|.+.|+..+
T Consensus 64 -H~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSGS----- 124 (315)
T KOG0279|consen 64 -HFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSGS----- 124 (315)
T ss_pred -eEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecCC-----
Confidence 4789999999998765533 3568899999999887776655543 67899999999999652
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---ccccccccCCCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (958)
....|-+++. ++....+... ..+..+.|||..
T Consensus 125 --------------------------------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 125 --------------------------------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred --------------------------------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 1233556666 4433344333 567889999986
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.-..+.+.. .++.+.+||+++-+.+. .+. +.......+++||||...+.-
T Consensus 161 ~~p~Ivs~s-----------~DktvKvWnl~~~~l~~--~~~----------gh~~~v~t~~vSpDGslcasG------- 210 (315)
T KOG0279|consen 161 SNPIIVSAS-----------WDKTVKVWNLRNCQLRT--TFI----------GHSGYVNTVTVSPDGSLCASG------- 210 (315)
T ss_pred CCcEEEEcc-----------CCceEEEEccCCcchhh--ccc----------cccccEEEEEECCCCCEEecC-------
Confidence 433333311 34589999999755433 222 222455779999999987761
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+..+.+++||+ .+++.... ......+.+++|||.--+|....... .+|| +++++ ..+.+...
T Consensus 211 ------gkdg~~~LwdL--~~~k~lys-l~a~~~v~sl~fspnrywL~~at~~s---IkIw--dl~~~----~~v~~l~~ 272 (315)
T KOG0279|consen 211 ------GKDGEAMLWDL--NEGKNLYS-LEAFDIVNSLCFSPNRYWLCAATATS---IKIW--DLESK----AVVEELKL 272 (315)
T ss_pred ------CCCceEEEEEc--cCCceeEe-ccCCCeEeeEEecCCceeEeeccCCc---eEEE--eccch----hhhhhccc
Confidence 45668899996 33333222 23445678899999976666553211 4455 44442 11111111
Q ss_pred ccc-----cCCCCCCceEeccCCceEEEEe
Q 002164 504 EDV-----YSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 504 ~~~-----~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.. -+.+....++||+||.+|+...
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 100 0111122378999999988775
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-10 Score=115.76 Aligned_cols=292 Identities=14% Similarity=0.113 Sum_probs=169.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
.+|++|++.+. .+....+.....-.+....+|+|++++|+.+.. .+..+...-|.+|.+.|+...+-.......
T Consensus 16 ~gI~v~~ld~~--~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~----~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDTK--TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNE----PGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeCc--ccccchhhhccccCCCceEEECCCCCEEEEEEe----cCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 47899998522 133222221222246888999999998877663 224566677888877787766533222110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
....++.++||++++.+... .+.|-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~AnY~------------------------------------------------~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVANYH------------------------------------------------SGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEEcc------------------------------------------------CceEEEEEcc
Confidence 02367788999999877211 112222222
Q ss_pred -CCeeeecCC-------------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCc
Q 002164 322 -DGTVKEIGP-------------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (958)
Q Consensus 322 -~g~~~~l~~-------------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~ 386 (958)
+|.+..+.. . .......+.|||++|+...... .+|++|+++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCcccccccccc
Confidence 232211110 0 1244567999999999887442 389999998554443332211
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe---------eccc
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---------LDLR 457 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---------~~~~ 457 (958)
.| ..|+|.+.|.|+|+..++..+- .+.|-++..++ .+++.+.|.. ++..
T Consensus 188 ---~~------G~GPRHi~FHpn~k~aY~v~EL------------~stV~v~~y~~-~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---KP------GAGPRHIVFHPNGKYAYLVNEL------------NSTVDVLEYNP-AVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---CC------CCCcceEEEcCCCcEEEEEecc------------CCEEEEEEEcC-CCceEEEeeeeccCccccCCCCc
Confidence 11 1678999999999977765321 33444444312 2455555521 1223
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
...+..|+||++|+.+ ++.-+...+|.++..++ ....+...+.+.....+ |.++++|++|+...+++
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~----F~i~~~g~~Liaa~q~s------ 312 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRD----FNINPSGRFLIAANQKS------ 312 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCcc----ceeCCCCCEEEEEccCC------
Confidence 3458889999987654 55545577888888875 23333222222221111 77899999988876432
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
+.-.+|..|-++|+...+..
T Consensus 313 ------------d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 ------------DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ------------CcEEEEEEcCCCceEEeccc
Confidence 23357777888887766643
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=137.76 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=121.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~a 746 (958)
.|.||++||.+... ..| . .....| +.+|.|++ .|.+|+|.+..... ......+|+.+.
T Consensus 88 gp~lvllHG~~~~~-----------~~w---~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGASI-----------PHW---R-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCCCH-----------HHH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 36789999964211 111 1 123334 45899999 66678887754321 123445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEeccCCCCCC----CCCC------------c------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------ 803 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~----~~~~------------~------ 803 (958)
++.+ ..+++.|+|||+||.+++.++. ++|++++++|++++...... ..+. +
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5432 2358999999999999998887 46899999998886421100 0000 0
Q ss_pred ------cc--ccchh-------hhc---------------------HHHHHh-------cCcccccCCCCCCEEEEeeCC
Q 002164 804 ------QN--EDRTL-------WEA---------------------TSTYVE-------MSPFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 804 ------~~--~~~~~-------~~~---------------------~~~~~~-------~sp~~~~~~~~~P~Lii~G~~ 840 (958)
.. ..... +.+ ...+.. .+....+.++++|+||++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 00 00000 000 000000 011134567889999999999
Q ss_pred CCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 841 DNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 841 D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
|..+| +... .++++.+.+.-...+++++|++||... .+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99988 6542 234555554434579999999999864 67788889999999975
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=134.27 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=115.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-----hHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-----FVEQLVACAE 744 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~-----~~~~~~~D~~ 744 (958)
.|.||++||++..+. . +.......+.+.||.|+. .+.+|+|.+..... ......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~-----------~---~~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-----------E---YLENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH-----------H---HHHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642210 0 011222334445999999 55557776644311 1233444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----CC--Ccccc---------cc
Q 002164 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----PF--GFQNE---------DR 808 (958)
Q Consensus 745 ~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~~--~~~~~---------~~ 808 (958)
+.+ +. .+.+++.++||||||.+++.++.+.|++++++|+.+++...... .+ .+... ..
T Consensus 88 ~~~----~~--~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVR----EK--LGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHH----HH--cCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 333 32 23357999999999999999999999999999988765321100 00 00000 00
Q ss_pred hhhhcH---------------------------------HHH---------------HhcCcccccCCCCCCEEEEeeCC
Q 002164 809 TLWEAT---------------------------------STY---------------VEMSPFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 809 ~~~~~~---------------------------------~~~---------------~~~sp~~~~~~~~~P~Lii~G~~ 840 (958)
..+.++ ..+ ...+....+.++++|+|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 000000 000 00011123457889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
|. ++ +.....+.+.+. .+++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 566666665553 357889999999875 4567788888888873
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-11 Score=115.45 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=187.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCC---------chhcccccceeeceeecCCCCCccceeeEeceeEEEccCC---CCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPP---------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d---g~~~ 177 (958)
-+....||+|.++|+..+.++... ...++-|..++-.-.++|.++-...++-++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 355677888888888877663322 3344445566666778888877766666667778888643 3233
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~ 256 (958)
..+.|.+++ +..+.-.|-+|+ +|+. +.|....-+||+++|+..+......+. +-.+..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT---------~SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILT---------GSGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEe---------cCCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 456676644 688888998765 6776 335677788899999887776655543 66888889 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCC-cc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AV 333 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~ 333 (958)
.++.... ...-+++|+ .|..++ +..+ ..
T Consensus 201 tFvSg~c-------------------------------------------------D~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC-------------------------------------------------DKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc-------------------------------------------------ccceeeeeccCcceeEeecccccc
Confidence 8875511 112334555 554444 4444 88
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..+.|-|+|..++..+++ +...+||+.....-.+...+... .++.++.||--|+.|
T Consensus 232 INsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~~~----------~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDSII----------CGITSVAFSKSGRLL 288 (343)
T ss_pred cceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCccc----------CCceeEEEcccccEE
Confidence 9999999999988877744 47889999865444444332221 567899999999876
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+.- .......+||. +.+...-.|..++.++.-+..+|||-.++..+|+.. .+||
T Consensus 289 fag-------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 289 FAG-------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST--LRIW 342 (343)
T ss_pred Eee-------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHh--eeec
Confidence 551 22345788995 788888888999999999999999999999888775 5666
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=130.34 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=115.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.||++||.+... ..| ......| ..+|.|++ .+.+|+|.+...... ++.+.++.
T Consensus 4 ~~~iv~~HG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~d~~G~G~s~~~~~~------~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGMNA-----------EVF----RCLDEEL-SAHFTLHL---VDLPGHGRSRGFGPL------SLADAAEA 58 (245)
T ss_pred CceEEEEcCCCCch-----------hhH----HHHHHhh-ccCeEEEE---ecCCcCccCCCCCCc------CHHHHHHH
Confidence 36789999953211 111 1223333 46799999 556677776432211 22333333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CC--Ccc------------cccc---hhh
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF--GFQ------------NEDR---TLW 811 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~--~~~------------~~~~---~~~ 811 (958)
+.+. . .+++.++|||+||.+++.++.++|++++++|++++....... .+ ... .... ..+
T Consensus 59 ~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T TIGR01738 59 IAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERF 135 (245)
T ss_pred HHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 4333 2 258999999999999999999999999999987654321100 00 000 0000 000
Q ss_pred -------------------hc--------H----H---HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 812 -------------------EA--------T----S---TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 812 -------------------~~--------~----~---~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
.. . . .+...+....+.++++|+|+++|++|..+| +...+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~ 213 (245)
T TIGR01738 136 LALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKL 213 (245)
T ss_pred HHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHh
Confidence 00 0 0 000111123456889999999999999998 7777777665
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
++ .++++++|++||... .++...+.+.+.+|+
T Consensus 214 ~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 214 AP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred CC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 54 468899999999875 466778888888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-11 Score=122.43 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=179.6
Q ss_pred HHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 103 REIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 103 ~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
.+....+.+..++|+.||..||+...+ +.+.||+. +| .....+
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl 272 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTL 272 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhh
Confidence 344555678899999999999998865 47889987 44 344444
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
.. +.+.+....|+-+|.+|+-.. -...+.+||..+|+..+........ .-.+.|-.+.+.....
T Consensus 273 ~~--HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~- 336 (524)
T KOG0273|consen 273 GQ--HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS- 336 (524)
T ss_pred hc--cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC-
Confidence 33 335899999999999999843 3667888999899887776555432 2367898666533322
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-cccccccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~ 339 (958)
....|+++-+ ++....+..+ +.+..+.|
T Consensus 337 -------------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 337 -------------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred -------------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 1223555555 4444444445 78889999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
.|-|+.|+..+.+ +++.||... ++....|..+ ...+..+.|||+|...--
T Consensus 368 n~tg~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~n--- 418 (524)
T KOG0273|consen 368 NPTGSLLASCSDD-------------GTLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTSN--- 418 (524)
T ss_pred CCCCceEEEecCC-------------CeeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccCC---
Confidence 9999999988754 488899854 3333333222 134567889999873211
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
. ..+...........|.+||+ ..|.....+.++...+.+++|||+|++|++.+..+. ..+| +...+ +...-
T Consensus 419 ~-~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~--V~iw--s~~~~--~l~~s 489 (524)
T KOG0273|consen 419 P-NMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC--VHIW--STKTG--KLVKS 489 (524)
T ss_pred C-cCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe--eEec--cccch--heeEe
Confidence 0 01111122345667888987 455566667788889999999999999999865443 3444 44442 11111
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
. .....++. ++|+.+|..|....
T Consensus 490 ~-~~~~~Ife------l~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 490 Y-QGTGGIFE------LCWNAAGDKLGACA 512 (524)
T ss_pred e-cCCCeEEE------EEEcCCCCEEEEEe
Confidence 1 11122222 88999998876655
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=125.20 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=165.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC--CeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~~ 266 (958)
..+....||+||+.|+..+ -+|...|| +.......+...+.... +..+.|.|. +..|+..+.+
T Consensus 176 rPis~~~fS~ds~~laT~s-------wsG~~kvW--~~~~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGS-------WSGLVKVW--SVPQCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred CcceeeEeecCCCeEEEee-------cCCceeEe--ecCCcceeEEEeccccc----eeeEEEccCCCccceeeeccC--
Confidence 3677889999999999876 23455555 44455555544444433 778999997 4566654211
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcE
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
+.-.||.++-.-....|... ..+..++|.|+|++
T Consensus 241 ---------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 241 ---------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred ---------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 22335544433345556555 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+..+ ++..-.+||+.++..-.+- .++..++.+++|.|||..++- |
T Consensus 276 L~Tas-------------fD~tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL~~t------G--- 321 (459)
T KOG0272|consen 276 LGTAS-------------FDSTWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSLAAT------G--- 321 (459)
T ss_pred eeecc-------------cccchhhcccccchhhHhh------------cccccccceeEecCCCceeec------c---
Confidence 99887 3457789999866432211 133467789999999986554 1
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+.+..-.+||+ ..|...-.|..+-..+..+.|||+|-.|+..+.+++ .+||.+..... .-+...+...
T Consensus 322 ----GlD~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt--~kVWDLR~r~~----ly~ipAH~nl 389 (459)
T KOG0272|consen 322 ----GLDSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT--CKVWDLRMRSE----LYTIPAHSNL 389 (459)
T ss_pred ----Cccchhheeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCc--EEEeeeccccc----ceecccccch
Confidence 22223356775 456666666666677889999999999988876665 67887764431 1122222222
Q ss_pred ccCCCCCCceEecc-CCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecC
Q 002164 506 VYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (958)
Q Consensus 506 ~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (958)
+.. +.|+| -|.+|+....+ ..+.+|...+....+...+...+ +.
T Consensus 390 VS~------Vk~~p~~g~fL~TasyD---------------------~t~kiWs~~~~~~~ksLaGHe~k----V~---- 434 (459)
T KOG0272|consen 390 VSQ------VKYSPQEGYFLVTASYD---------------------NTVKIWSTRTWSPLKSLAGHEGK----VI---- 434 (459)
T ss_pred hhh------eEecccCCeEEEEcccC---------------------cceeeecCCCcccchhhcCCccc----eE----
Confidence 222 78898 55556554421 23667776665544333333221 11
Q ss_pred CCccccccccCCEEEEE
Q 002164 585 DQTEGDLYLNQLKILTS 601 (958)
Q Consensus 585 ~~~~~~~s~dg~~l~~~ 601 (958)
.+++|+|+..++..
T Consensus 435 ---s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 435 ---SLDISPDSQAIATS 448 (459)
T ss_pred ---EEEeccCCceEEEe
Confidence 24678888766543
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-11 Score=127.09 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
..++|.|++ .|.+|+|.+..+... .....++.+.+..++++ .+.+++.++||||||.+++.++.++|++++++|
T Consensus 57 l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGEFVDH--LGLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHH--hCCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 356799999 566688877543221 12244555555555554 234689999999999999999999999999999
Q ss_pred EeccCCCCCCC----CCC--ccc---cc---------ch--------hhh--cHHHHH-----------------hc---
Q 002164 789 ARSGAYNRTLT----PFG--FQN---ED---------RT--------LWE--ATSTYV-----------------EM--- 820 (958)
Q Consensus 789 ~~~~~~~~~~~----~~~--~~~---~~---------~~--------~~~--~~~~~~-----------------~~--- 820 (958)
+.++..-.... .+. +.. .. .. ... ....+. ..
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T PRK03204 131 LGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAA 210 (286)
T ss_pred EECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchh
Confidence 87654210000 000 000 00 00 000 000000 00
Q ss_pred Cc-ccc----cCC--CCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002164 821 SP-FMS----ANK--LKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (958)
Q Consensus 821 sp-~~~----~~~--~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 892 (958)
.+ +.. +.+ +++|+|+++|++|..++ +.. .+++.+.+.. .+++++|++||... .+..+.+.+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~ 283 (286)
T PRK03204 211 RPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPRLRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIE 283 (286)
T ss_pred hHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHHHHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHH
Confidence 00 000 111 27999999999999875 443 4555555543 58889999999974 5677788888888
Q ss_pred HH
Q 002164 893 WL 894 (958)
Q Consensus 893 fl 894 (958)
||
T Consensus 284 ~~ 285 (286)
T PRK03204 284 RF 285 (286)
T ss_pred hc
Confidence 86
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=129.42 Aligned_cols=205 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc----
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---- 713 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---- 713 (958)
.+.+++.+. -|.+...++|+|++++ .+ ++|+|+++||..+... .........+.++|.
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~~~--------------~~~~~~ld~li~~g~i~P~ 242 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWAES--------------MPVWPALDSLTHRGQLPPA 242 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhhhc--------------CCHHHHHHHHHHcCCCCce
Confidence 455666553 4677888999999886 22 5999999999642110 001223445666773
Q ss_pred EEEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 714 AILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
+++.++..+......... ...+...+.+ +.+-++.++.. .|+++.+|+|.||||+.|++++.++|++|.+++++
T Consensus 243 ivV~id~~~~~~R~~el~~~~~f~~~l~~---eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~ 319 (411)
T PRK10439 243 VYLLIDAIDTTHRSQELPCNADFWLAVQQ---ELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQ 319 (411)
T ss_pred EEEEECCCCcccccccCCchHHHHHHHHH---HHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEe
Confidence 345544422211111111 1222223333 33444555532 57889999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 002164 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (958)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (958)
+|.+-+... .....-| -.+.+... ....-+..++|.+|..|..+ ....+++++.|+++|.++++.++
T Consensus 320 Sgs~ww~~~-----~~~~~~~-l~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~~ 386 (411)
T PRK10439 320 SGSFWWPHR-----GGQQEGV-LLEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQV 386 (411)
T ss_pred ccceecCCc-----cCCchhH-HHHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEEC
Confidence 986421100 0000000 01111110 01112345888899998654 57789999999999999999999
Q ss_pred CCCCccC
Q 002164 871 PFESHGY 877 (958)
Q Consensus 871 p~~~H~~ 877 (958)
+| ||..
T Consensus 387 ~G-GHd~ 392 (411)
T PRK10439 387 DG-GHDA 392 (411)
T ss_pred CC-CcCH
Confidence 98 7975
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=119.99 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=139.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCC-
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIG- 725 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G- 725 (958)
+|...++++|.|++.+. ..|+||++||+... .+++...+ +| - .+| ..||.|+.++..+..-
T Consensus 43 ~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~s--g~-------d-~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 43 NGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHGT--GW-------D-ALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred CCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhccc--ch-------h-hhhcccCcEEECcCccccccC
Confidence 67889999999998642 25999999997432 22222211 12 2 344 4799999975544322
Q ss_pred ---CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CCCCC
Q 002164 726 ---EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT 799 (958)
Q Consensus 726 ---~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~ 799 (958)
.+..+.+. .....++..+.+.++.|..+.-||+.||+|.|.|.||.|+..++..+|++|.++..+++.. +..-.
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~ 185 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVAC 185 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCccc
Confidence 22221221 3344678888899999999999999999999999999999999999999999999998864 11000
Q ss_pred CCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC------------------
Q 002164 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH------------------ 861 (958)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~------------------ 861 (958)
....+..-...-...+|......=..| |-+|..|..|+ .....+..+++..-
T Consensus 186 ------~~~rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 186 ------TPPRPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred ------CCCCchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 000000000000111222111111233 77777777765 55555555555321
Q ss_pred -----CCcEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHhh
Q 002164 862 -----GALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (958)
Q Consensus 862 -----g~~~~~~~~p~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (958)
+.++++..+.+.||.+..... .....++|.+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 236888899999998753111 1235678999998874
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=123.92 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=139.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.++..||..+...+..++. ....|+||.+||-. |+- .+.+.......+.++||.|+. +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s--~s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSS--NSPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCC--cCHHHHHHHHHHHhcCCeEEE---Ee
Confidence 5566677666555555422 11269999999942 221 112233455667789999999 66
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH-HHHHHHHhCC-CceeEEEEeccCCCCCC
Q 002164 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF-MTANLLAHAP-HLFCCGIARSGAYNRTL 798 (958)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~-~a~~~a~~~p-~~~~a~v~~~~~~~~~~ 798 (958)
.+|.+.+.. +.-+.....+|+..++++++++.. +.++..+|.|+||. ++.+++-..- -.+.|++.++-.+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 667665532 233344567999999999999643 46899999999995 5555544321 13455555554333110
Q ss_pred ------CCCC----------------------c----ccc-------cchhhh--------------cHHHHHhcCcccc
Q 002164 799 ------TPFG----------------------F----QNE-------DRTLWE--------------ATSTYVEMSPFMS 825 (958)
Q Consensus 799 ------~~~~----------------------~----~~~-------~~~~~~--------------~~~~~~~~sp~~~ 825 (958)
..+. + ... .++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 0 000 011221 2366788899999
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc-C-CCcc-cHH-HHHHHHHHHHHHhhc
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG-Y-AARE-SIM-HVLWETDRWLQKYCV 899 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~-~-~~~~-~~~-~~~~~i~~fl~~~l~ 899 (958)
+.+|.+|+||||..+|+.++ +...-+. ..+ ....+.+.+-+.+||. + .+.. +.. -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~iP~~-~~~--~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVIPKL-QEM--LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhCCcc-hhc--CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 4322121 111 3446888888989996 2 2122 222 234568999998864
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=119.20 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=130.1
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
.+.+++..|. +.++++.|.+ ..+.|+||++||.... .+.+.......+..|+++||.|+.
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~-----~~~~~~VlllHG~g~~-----------~~~~~~~~~~la~~La~~Gy~Vl~--- 61 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVA-----VGPRGVVIYLPPFAEE-----------MNKSRRMVALQARAFAAGGFGVLQ--- 61 (266)
T ss_pred CEEecCCCCc-EEEEEecCCC-----CCCceEEEEECCCccc-----------ccchhHHHHHHHHHHHHCCCEEEE---
Confidence 3556665554 6677777764 2247999999994210 011111111345678889999999
Q ss_pred CCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 721 TPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 721 ~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+|.+|+|.+... ........+|+.++++++.+++ .++|+|+|+||||.+++.++.++|+.++++|+.+|+.+...
T Consensus 62 ~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~ 138 (266)
T TIGR03101 62 IDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQ 138 (266)
T ss_pred ECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHH
Confidence 556677776432 2234567899999999998874 35899999999999999999999999999999998765221
Q ss_pred CC-----CC-----cccccc----hhh------------------hcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 799 TP-----FG-----FQNEDR----TLW------------------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 799 ~~-----~~-----~~~~~~----~~~------------------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
.- .. ...... ..- +....+...+....... ..++|++.-..+.--+
T Consensus 139 ~l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~- 216 (266)
T TIGR03101 139 QLQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGAT- 216 (266)
T ss_pred HHHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCC-
Confidence 00 00 000000 000 00011222222111111 4577887764332211
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
......++.+.+++.|+.++...|++.
T Consensus 217 ~~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 217 LSPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CCHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 145678899999999999999999986
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=133.94 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=112.6
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchh----hH------HHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHH
Q 002164 707 LWLARGFAILGGPTTPIIGEGDEEANDR----FV------EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (958)
Q Consensus 707 ~la~~G~~vl~~~~~~~~G~G~~~~~~~----~~------~~~~~D~~~av~~l~~~~~~d~~~-i~l~G~S~GG~~a~~ 775 (958)
.|...+|.|++ .|.+|+|.+..+.. +. ....+|+.+.+..+.+.-.+ ++ +.|+||||||++|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi--~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFGI--ERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhCC--CceEEEEEeCHHHHHHHH
Confidence 34567899999 56668887753321 10 11234554434445443123 57 478999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCC----------------CCC---Ccc--------------------cc--cc------
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQ--------------------NE--DR------ 808 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~----------------~~~---~~~--------------------~~--~~------ 808 (958)
++.++|++++++|++++...... ..+ .+. .. ..
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 000 00 00
Q ss_pred ------h----hhh------cHHH-------HHhc----------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 809 ------T----LWE------ATST-------YVEM----------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 809 ------~----~~~------~~~~-------~~~~----------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
. .+. .+.. +... +....+.++++|+|+++|++|..+| +..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 000 0000 0000 1112345688999999999999998 88887777
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+.. .+++++++ +||... .+....+...+.+||.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 66643 58889998 899763 55667788889999998863
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=120.70 Aligned_cols=294 Identities=11% Similarity=0.112 Sum_probs=176.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|+--|.||||.... . +.|-||+... +.-.++...+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 56678888899999998763 0 2566666532 112222111223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...++||||+.||.. .+...|.+||...|-...-...+... +..+.|+.+|+.|+.++-+
T Consensus 352 ~i~~l~YSpDgq~iaTG---------~eDgKVKvWn~~SgfC~vTFteHts~----Vt~v~f~~~g~~llssSLD----- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATG---------AEDGKVKVWNTQSGFCFVTFTEHTSG----VTAVQFTARGNVLLSSSLD----- 413 (893)
T ss_pred ceeeEEECCCCcEEEec---------cCCCcEEEEeccCceEEEEeccCCCc----eEEEEEEecCCEEEEeecC-----
Confidence 68889999999999984 44678888998887765333323322 7789999999999977211
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDGk~ 345 (958)
+.+-.+|+ .+ .-+.++.+ .....++..|-|..
T Consensus 414 --------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 414 --------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred --------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 22334444 33 34445444 44556677777886
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+...+.+ .-+|++|+++++....+ ..++ +.+..+.|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 6555432 23899999997765433 3222 445678999999976652
Q ss_pred cccccccCCeEEEEeCCCCCC-CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc-------------CCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-------------PGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~-------------~~~ 490 (958)
+-+..|.+|++ .+. ++...+ ....++..++|+|||+.|+.+.-.+. ..+|.+. +.+
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq--Itf~d~~~~~q~~~IdgrkD~~~ 566 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ--ITFFDIKEAVQVGSIDGRKDLSG 566 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce--EEEEEhhhceeeccccchhhccc
Confidence 23446788886 333 233333 33455778999999999998864432 3333322 122
Q ss_pred CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
+....-.++....... ..-..+.+|+||+.|+.+.. ...+++|++.++-..+.+.
T Consensus 567 gR~~~D~~ta~~sa~~---K~Ftti~ySaDG~~IlAgG~---------------------sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 567 GRKETDRITAENSAKG---KTFTTICYSADGKCILAGGE---------------------SNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred cccccceeehhhcccC---CceEEEEEcCCCCEEEecCC---------------------cccEEEEECchhheeeeEE
Confidence 1111111111111100 00112678999998876642 2368999988876554443
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=135.04 Aligned_cols=192 Identities=16% Similarity=0.112 Sum_probs=114.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (958)
.|.||++||.+.. ...| ...... ..++|.|++ ++.+|+|.+... .........++.+
T Consensus 131 ~~~vl~~HG~~~~-----------~~~~----~~~~~~-l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~-- 189 (371)
T PRK14875 131 GTPVVLIHGFGGD-----------LNNW----LFNHAA-LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLA-- 189 (371)
T ss_pred CCeEEEECCCCCc-----------cchH----HHHHHH-HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHH--
Confidence 5779999995311 1111 112223 345699999 566677766322 2223333433333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCc----ccc-----------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF----QNE----------------- 806 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~----~~~----------------- 806 (958)
+.+. .+.+++.++|||+||.+++.++.++|++++++|+.++..........+ ...
T Consensus 190 --~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
T PRK14875 190 --FLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADP 265 (371)
T ss_pred --HHHh--cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcCh
Confidence 3332 455689999999999999999999998999999988753211000000 000
Q ss_pred c--c-hh----hh-----c-HHH---HH---------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 807 D--R-TL----WE-----A-TST---YV---------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 807 ~--~-~~----~~-----~-~~~---~~---------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
. . .. +. . ... +. ..+....+.++++|+|++||++|..+| +.++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~~----- 338 (371)
T PRK14875 266 ALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLPD----- 338 (371)
T ss_pred hhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccC--HHHHhhccC-----
Confidence 0 0 00 00 0 000 00 011122456789999999999999998 776654432
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 862 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+++.++|++||... .++...+.+.|.+||.+
T Consensus 339 --~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 339 --GVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred --CCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 368889999999874 45566677777777754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-10 Score=118.46 Aligned_cols=245 Identities=16% Similarity=0.136 Sum_probs=153.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+..+.|+|||+.|++... ...|++++..+++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46889999999999998542 557888888776543332222221 55889999998888761
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....|+++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1245777777 54 34444433 56788999999877
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++.... .+.+.+|++..+. ...+..+ ...+..+.|+|+++.++..
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLRGH-------------TDWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEeccC-------------CCcEEEEEEcCcCCEEEEE--------
Confidence 666551 2489999998443 3333211 1345788999997766552
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
...+.+++|++ ..+.....+......+..+.|+|+++.|++.... ..+.+++...+ +..........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD----GTIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCC----CcEEEEECCCC--ceecchhhcCC
Confidence 22557888985 2233344445455567889999999988887652 23556666543 22222212222
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+.. +.|+|++..++.... ...|++||+.+++......
T Consensus 221 ~i~~------~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ceEE------EEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEcc
Confidence 2222 778999776655431 1258999998766554443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-09 Score=120.05 Aligned_cols=227 Identities=17% Similarity=0.170 Sum_probs=147.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc-CCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF-QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.+...+|+--|+||||... ...+|-+|+-.+.. .-+- ...... +..++.||||++|+...
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEs-YVlKQQgH~~~----i~~l~YSpDgq~iaTG~------ 369 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSES-YVLKQQGHSDR----ITSLAYSPDGQLIATGA------ 369 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccc-eeeeccccccc----eeeEEECCCCcEEEecc------
Confidence 6788899999999999542 24455555544422 1111 111111 66899999999999661
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
..+.+-++|. .| -...++++ ..++.+.|+.+|+.
T Consensus 370 -------------------------------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 370 -------------------------------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred -------------------------------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 1133556666 55 45566666 78899999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+-.+. ++++..||+. ....|.++.... + ...-++-.|-|..+..- .
T Consensus 407 llssSL-------------DGtVRAwDlkRYrNfRTft~P~p-----~-------QfscvavD~sGelV~AG--~----- 454 (893)
T KOG0291|consen 407 LLSSSL-------------DGTVRAWDLKRYRNFRTFTSPEP-----I-------QFSCVAVDPSGELVCAG--A----- 454 (893)
T ss_pred EEEeec-------------CCeEEeeeecccceeeeecCCCc-----e-------eeeEEEEcCCCCEEEee--c-----
Confidence 988874 4589999998 445555554211 1 11234445556533320 0
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
-..-.|++|++ ..|.....|..+++.+..+.|+|+|..|+..+|+++ .++|.+=-..++.++..+. .
T Consensus 455 -----~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~----s 521 (893)
T KOG0291|consen 455 -----QDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR----S 521 (893)
T ss_pred -----cceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----c
Confidence 11225899996 345455566888999999999999999999999988 7888765554333332222 1
Q ss_pred cccCCCCCCceEeccCCceEEEEee
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++.. ++|+|||+.|+....
T Consensus 522 dvl~------vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 522 DVLA------VSFRPDGKELAVATL 540 (893)
T ss_pred ceeE------EEEcCCCCeEEEEEe
Confidence 2222 889999999998874
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-12 Score=131.80 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=104.0
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.+..| ++||.|++ .+.+|+|.+.... .......+|+.++++.+ ..+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45556 58999999 5666788775532 22344555555554443 22689999999999999999999
Q ss_pred CCCceeEEEEeccCCCCCCCC--C----Cccc-------ccc----h---hhhcH-----------HH--------HHhc
Q 002164 780 APHLFCCGIARSGAYNRTLTP--F----GFQN-------EDR----T---LWEAT-----------ST--------YVEM 820 (958)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~--~----~~~~-------~~~----~---~~~~~-----------~~--------~~~~ 820 (958)
+|++++++|+.++........ . .+.. ... . .+... .. +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 000 0 00000 00 0122
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+....+.++++|+++++|++|..++ ....+++.+.+. .++++++|++||.+.
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 3334567789999999999999987 666666665543 479999999999863
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-10 Score=121.08 Aligned_cols=291 Identities=14% Similarity=0.180 Sum_probs=154.9
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.|+++.+..+. +....+.............++||++.|+.+... ....+.-..|.++.++|+...+.......
T Consensus 14 gI~~~~~d~~~--g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-- 86 (345)
T PF10282_consen 14 GIYVFRFDEET--GTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG-- 86 (345)
T ss_dssp EEEEEEEETTT--TEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS--
T ss_pred cEEEEEEcCCC--CCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC--
Confidence 68888883322 443333322233467888999999877766421 01334445566666656766554332110
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
.....++.+|||+.|+.+- |..+.+.++++
T Consensus 87 ~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~~ 118 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLDD 118 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEECT
T ss_pred CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEccC
Confidence 0023567789999999871 12344555555
Q ss_pred CCeeeec---C-----------CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccC
Q 002164 322 DGTVKEI---G-----------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDL 384 (958)
Q Consensus 322 ~g~~~~l---~-----------~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~ 384 (958)
+|..... . +. .....+.++|||+++++.... ...|++++++... .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEeecc
Confidence 3533222 1 11 334568899999999877643 2378999887443 3321111
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-----cc---
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DL--- 456 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~--- 456 (958)
... ...+++.+.|+|||+.+++.. ...+.|.+++..+ ..+..+.+... ..
T Consensus 187 ~~~---------~G~GPRh~~f~pdg~~~Yv~~------------e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 187 KVP---------PGSGPRHLAFSPDGKYAYVVN------------ELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp ECS---------TTSSEEEEEE-TTSSEEEEEE------------TTTTEEEEEEEET-TTTEEEEEEEEESCETTSCSS
T ss_pred ccc---------cCCCCcEEEEcCCcCEEEEec------------CCCCcEEEEeecc-cCCceeEEEEeeecccccccc
Confidence 100 115778999999999887742 2244566666411 23343333211 11
Q ss_pred -ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 457 -RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 457 -~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
....+.+||||++|+.+ ++..+...+|.++..++ ....+.......... -.+.++|||++|+......
T Consensus 245 ~~~~~i~ispdg~~lyvs-nr~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~P----r~~~~s~~g~~l~Va~~~s---- 313 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVS-NRGSNSISVFDLDPATG--TLTLVQTVPTGGKFP----RHFAFSPDGRYLYVANQDS---- 313 (345)
T ss_dssp SSEEEEEE-TTSSEEEEE-ECTTTEEEEEEECTTTT--TEEEEEEEEESSSSE----EEEEE-TTSSEEEEEETTT----
T ss_pred CCceeEEEecCCCEEEEE-eccCCEEEEEEEecCCC--ceEEEEEEeCCCCCc----cEEEEeCCCCEEEEEecCC----
Confidence 23458899999987765 54444456666655543 333322111111000 0177899999988776321
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+.-.++.+|.++|+...+.
T Consensus 314 --------------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 --------------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp --------------TEEEEEEEETTTTEEEEEE
T ss_pred --------------CeEEEEEEeCCCCcEEEec
Confidence 2224556677788766554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-11 Score=131.28 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=107.0
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhh-----HHHHHHHHHH-HHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCC
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRF-----VEQLVACAEA-AVEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~-----~~~~~~D~~~-av~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~~p~ 782 (958)
+++|.|++ .|.+|+|.+..+... ....++++.+ .+..+.++-.+ +++. |+||||||.+|+.++.++|+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~ 177 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGV--KHLRLILGTSMGGMHAWMWGEKYPD 177 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCC--CceeEEEEECHHHHHHHHHHHhCch
Confidence 57899999 566688877543210 0112223322 22333333222 4664 89999999999999999999
Q ss_pred ceeEEEEeccCCCCC------C-----------CCC---Cccccc---c--------------------hhh-hc-----
Q 002164 783 LFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA----- 813 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~------~-----------~~~---~~~~~~---~--------------------~~~-~~----- 813 (958)
+++++|++++..... . ..+ .+.... . ... ..
T Consensus 178 ~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T PRK06489 178 FMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLV 257 (360)
T ss_pred hhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHH
Confidence 999999887532100 0 000 000000 0 000 00
Q ss_pred -----------HHHHH-------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHH--HHHHHHHHhCCCcEEEEEeCCC
Q 002164 814 -----------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 814 -----------~~~~~-------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
...+. ..+....+.++++|+|+++|++|..+| +..+ +++.+.+.. .+++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i~~a 331 (360)
T PRK06489 258 DERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLIPAS 331 (360)
T ss_pred HHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEECCC
Confidence 00010 112223456789999999999999988 7765 566666544 589999996
Q ss_pred ----CccCCCcccHHHHHHHHHHHHHHh
Q 002164 874 ----SHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 874 ----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
||... +....+.+.+.+||...
T Consensus 332 ~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 332 PETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 99874 57888889999999765
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=126.08 Aligned_cols=190 Identities=11% Similarity=0.017 Sum_probs=114.9
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l 750 (958)
|.||++||.+.... .| ......| +..|.|++ .|.+|+|.+.....+ ..+ +.++.+
T Consensus 14 ~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNAE-----------VW----RCIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAV 68 (256)
T ss_pred CeEEEECCCCCChh-----------HH----HHHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHH---HHHHHH
Confidence 46899999542211 11 1223344 45699999 666788877543221 112 222333
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---CCCc-----------ccccchh---h--
Q 002164 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF-----------QNEDRTL---W-- 811 (958)
Q Consensus 751 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~-----------~~~~~~~---~-- 811 (958)
.+. ..+++.++||||||++++.+|.++|++++++|++++....... .... ....... +
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 333 2368999999999999999999999999999988763211000 0000 0000000 0
Q ss_pred ----------hcH----------------------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 812 ----------EAT----------------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 812 ----------~~~----------------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
... ..+...+....+.++++|+|+++|++|..+| .+.+..+.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~ 223 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP 223 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCC
Confidence 000 0011112223456788999999999999988 776665555544
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
..+++++|++||... .++...+.+.+.+|-.
T Consensus 224 ----~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 224 ----HSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ----CCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 358999999999874 5677777777777743
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-09 Score=107.04 Aligned_cols=253 Identities=15% Similarity=0.168 Sum_probs=163.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....||+||..++.+.. ...|.++|...|+..+.......+ +....|......+.+++.
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sSt----- 76 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSST----- 76 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEccC-----
Confidence 46888999999999998653 447888899888887776666543 667788855555554411
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~ 345 (958)
. ....|-.+++ +.+..+...+ ..+.+++.||-+..
T Consensus 77 ---------------------------------k---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 77 ---------------------------------K---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------------------------C---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 0 1134667788 6665555555 77889999998877
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++-.+.+ .+|.+||+...+.+-+.... +..-++|+|.|=.+|..
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~GLifA~~--------- 158 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEGLIFALA--------- 158 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCCcEEEEe---------
Confidence 7766643 48999999855444333321 22346788988544442
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEe---eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
.+.+.|.++|+-..+.+.-+...- .......+.||||||.|+.+.+. +.++++|.=.|+ ....+...
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~--~~~tfs~~ 228 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGT--VKSTFSGY 228 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCc--EeeeEeec
Confidence 233467777752333333333321 23344678999999999998644 458888876652 23322222
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
...... .....|+|||++|+....+ .+|.+|++++|+....+.+.
T Consensus 229 ~~~~~~---~~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGNL---PLSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCCc---ceeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 211100 0125799999998877621 26999999999988887764
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=116.11 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=122.6
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCc---ccchhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.+..+|..||.|+.||++..--+..+ .....| -+....|+..+++||+.++ +..+|+++|.+|||..+..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 45567889999999888533111111 111222 2345889999999999775 4579999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
+.+..| .|.++++.-|.+- + ..-+.++++|+|++.|+.|..+| +..-.++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 988886 7888888776421 1 22345678999999999999998 88888888
Q ss_pred HHHHhCC-CcEEEEEeCCCCccCCC-------c---ccHHHHHHHHHHHHHHhh
Q 002164 856 NALKGHG-ALCRLVILPFESHGYAA-------R---ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 856 ~~l~~~g-~~~~~~~~p~~~H~~~~-------~---~~~~~~~~~i~~fl~~~l 898 (958)
++++... ...++.+|+|.+|++.. + ...++.++.++.||.+|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 8888753 23579999999999863 1 234678889999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=133.28 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----------Cc--------e-eeccCCCCccccccccce
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----------GK--------A-RPLFQSPDIYLNAIFDNF 249 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----------g~--------~-~~lt~~~~~~~~~~~~~~ 249 (958)
+.+..++|||||+++|+.++ ...|.+|..+. |. . ..+..++. .+..+
T Consensus 70 ~sv~CVR~S~dG~~lAsGSD---------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv 135 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSD---------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDV 135 (942)
T ss_pred CceeEEEECCCCCeEeeccC---------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----cccee
Confidence 47888999999999999542 34444444331 11 1 11212222 26789
Q ss_pred EEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-e
Q 002164 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-E 327 (958)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~ 327 (958)
+|+||+.+|+... -...+.+++. +.+.. .
T Consensus 136 ~Wsp~~~~lvS~s-------------------------------------------------~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 136 NWSPDDSLLVSVS-------------------------------------------------LDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCCCccEEEEec-------------------------------------------------ccceEEEEccccceeeee
Confidence 9999999999762 1133666666 55433 3
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceee
Q 002164 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
+-.. +.+-.+.|.|=||+++..+.+ ..+-+|+... +-.+.++. |..+. ......+.++
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdD-------------rtikvwrt~dw~i~k~It~-pf~~~------~~~T~f~RlS 226 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDD-------------RTLKVWRTSDWGIEKSITK-PFEES------PLTTFFLRLS 226 (942)
T ss_pred eecccccccceEECCccCeeeeecCC-------------ceEEEEEcccceeeEeecc-chhhC------CCcceeeecc
Confidence 3333 677888999999999999855 3888998654 33344443 22211 1113457799
Q ss_pred eecCCCCceEE
Q 002164 406 WRSDKPSTLYW 416 (958)
Q Consensus 406 ~spDG~~l~~~ 416 (958)
|||||+.|+..
T Consensus 227 WSPDG~~las~ 237 (942)
T KOG0973|consen 227 WSPDGHHLASP 237 (942)
T ss_pred cCCCcCeecch
Confidence 99999998863
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=128.33 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=106.5
Q ss_pred HCCcEEEEcCCCCCCCCCCcccch-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEAND-RF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~-~~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
+++|.|++ .|.+|+|.+.... .+ .....+|+.+.++.+. .+++.++|||+||++++.+|.++|++++++
T Consensus 110 ~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 110 AKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred hcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 46799999 5556777765432 11 2233445555554432 358999999999999999999999999999
Q ss_pred EEeccCCCCCCCC------------CC---ccccc----------------c----------hhhhc-------------
Q 002164 788 IARSGAYNRTLTP------------FG---FQNED----------------R----------TLWEA------------- 813 (958)
Q Consensus 788 v~~~~~~~~~~~~------------~~---~~~~~----------------~----------~~~~~------------- 813 (958)
|++++........ +. +.... . ..+.+
T Consensus 181 vLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (354)
T PLN02578 181 ALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESIT 260 (354)
T ss_pred EEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHHH
Confidence 9887532110000 00 00000 0 00000
Q ss_pred --------HHHHH-----------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 814 --------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 814 --------~~~~~-----------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.+.+. ..+....+.++++|+|+++|++|..+| ...+.++.+.+.. .+++++ ++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~G 333 (354)
T PLN02578 261 EPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QAG 333 (354)
T ss_pred hcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CCC
Confidence 00000 001122356789999999999999998 8887777666543 477777 479
Q ss_pred ccCCCcccHHHHHHHHHHHHH
Q 002164 875 HGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~ 895 (958)
|... .+...++.+.|.+|+.
T Consensus 334 H~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 334 HCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCcc-ccCHHHHHHHHHHHHh
Confidence 9874 6677888899999985
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=112.51 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=141.1
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC----
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG---- 725 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G---- 725 (958)
-.+.--+|+|+.+..++ +.|++.++-|-. ..+..|.... .+.+.-..+|++|+.+|.- -+|
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~Ks-g~qq~As~hgl~vV~PDTS-PRG~~v~ 90 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEKS-GFQQQASKHGLAVVAPDTS-PRGVEVA 90 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhhh-hHHHhHhhcCeEEECCCCC-CCccccC
Confidence 45677789998876555 499999999843 2222232111 1222334589999996652 222
Q ss_pred -CCCc--------cc----ch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 726 -EGDE--------EA----ND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 726 -~G~~--------~~----~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
..++ +. .+ .++...++++...++- ..-.+|+.+++|+||||||.-|+.++.+.|.+++.
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~--~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykS 168 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNS--ANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKS 168 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhcc--ccccccchhcceeccccCCCceEEEEEcCcccccc
Confidence 1111 10 01 1122333333333221 23358999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC---CCCCEEEEeeCCCCCCCCChHH--HHHHHHHHHhC
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---LKKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGH 861 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---~~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~~ 861 (958)
+.+++|++|....+|+-....+.+.++...|..+++...+++ ...-+||-.|..|...+ ++ .+.+.++.+..
T Consensus 169 vSAFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~~ 245 (283)
T KOG3101|consen 169 VSAFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKAT 245 (283)
T ss_pred eeccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhcc
Confidence 999999999999999876666677777888888877555444 44568999999998753 33 35566666643
Q ss_pred -CCcEEEEEeCCCCccCC
Q 002164 862 -GALCRLVILPFESHGYA 878 (958)
Q Consensus 862 -g~~~~~~~~p~~~H~~~ 878 (958)
..++.+...+|-+|.+.
T Consensus 246 ~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 246 WQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred ccccEEEEeecCCCccee
Confidence 36788888999999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=118.77 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=158.3
Q ss_pred eceeEEEccCCCCCCceeeeccCC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
..+.|+.+ ||...+ .|+.+- ....+....|+|+|+..+|++. ...-+|.||+.+++..++....+..
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 47788888 554332 333221 2236788899999996666542 2557899999998887775433221
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+..+..|+|+++|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 12367889999999988761 2356778776
Q ss_pred -CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccc
Q 002164 322 -DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 322 -~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~ 398 (958)
+++.- .+...+.+..+.||.||+.|+.... +++||+||+..... ++..+ .+.
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-------------~GeV~v~nl~~~~~~~rf~D-~G~----------- 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGG-------------TGEVYVWNLRQNSCLHRFVD-DGS----------- 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcC-------------CceEEEEecCCcceEEEEee-cCc-----------
Confidence 66421 2222277889999999999988762 35999999985533 22222 110
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCC-CCCCCCceEEE---eeccccCceeeecCCceEEEEE
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE-PVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (958)
....++..|++|.+++.- +..+.|-+|+.. -..+..++.+. ..-..+.++.|++|++.|+..+
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 123568889999977662 445566666631 12345555553 2334577899999999999888
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+..+|..+. +. .+....+..... -.....+.|||.|.+++++.
T Consensus 455 ~~~knalrLVHvP--S~----TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVP--SC----TVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecc--ce----eeeccCCCCCCc-ccceEEEEecCCCceEEeec
Confidence 7655434444443 31 111111110000 00011278999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-10 Score=108.95 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=149.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.+|+||++.+..+.+ ..+.+||+.+ | ...+++.+++ .
T Consensus 65 ~v~dv~~s~dg~~alS~swD---------------------------------~~lrlWDl~~-g--~~t~~f~GH~--~ 106 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWD---------------------------------GTLRLWDLAT-G--ESTRRFVGHT--K 106 (315)
T ss_pred EecceEEccCCceEEecccc---------------------------------ceEEEEEecC-C--cEEEEEEecC--C
Confidence 57788999999988777765 5789999965 2 3456666644 5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC--eEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~~~~~~~ 267 (958)
.+...++|||.++|...+ ....|-+|++.|+-...+....+..+ +.-+.|+|.- -+|+...
T Consensus 107 dVlsva~s~dn~qivSGS---------rDkTiklwnt~g~ck~t~~~~~~~~W---VscvrfsP~~~~p~Ivs~s----- 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGS---------RDKTIKLWNTLGVCKYTIHEDSHREW---VSCVRFSPNESNPIIVSAS----- 169 (315)
T ss_pred ceEEEEecCCCceeecCC---------CcceeeeeeecccEEEEEecCCCcCc---EEEEEEcCCCCCcEEEEcc-----
Confidence 789999999999998844 36688888988876666655542222 7789999985 3333220
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk 344 (958)
....+-+.|+ +-+.+.-..+ +.++.+.+||||.
T Consensus 170 --------------------------------------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 170 --------------------------------------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred --------------------------------------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 1123555666 3344333322 7788899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
..+... .++++.+||++.++. +...+.. .-+.++.|+|+--.|...+
T Consensus 206 lcasGg-------------kdg~~~LwdL~~~k~--lysl~a~-----------~~v~sl~fspnrywL~~at------- 252 (315)
T KOG0279|consen 206 LCASGG-------------KDGEAMLWDLNEGKN--LYSLEAF-----------DIVNSLCFSPNRYWLCAAT------- 252 (315)
T ss_pred EEecCC-------------CCceEEEEEccCCce--eEeccCC-----------CeEeeEEecCCceeEeecc-------
Confidence 888743 245999999985432 3332221 2347899999876555421
Q ss_pred cccccccCCeEEEEeCCCCCCC-CceEEE---------eeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGE-GPEILH---------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~-~~~~l~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
...|-+|++ +++ ....|. ..+..+-+++||+||+.|+..-..+. .++|.+.
T Consensus 253 -------~~sIkIwdl---~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 253 -------ATSIKIWDL---ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred -------CCceEEEec---cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 223667775 332 222221 01223456899999999876543333 6777653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-09 Score=115.49 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=140.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-CCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-~g~~~~lt~~~~~~ 241 (958)
..|.+|++.++|++.....+ +.+......++||||++|+.... ....|..++++ +|....+...+...
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~--------~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV---DVPGQVQPMVISPDKRHLYVGVR--------PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEE---ecCCCCccEEECCCCCEEEEEEC--------CCCcEEEEEECCCCceEEeeeecCCC
Confidence 37889998543432222223 23345677899999998866432 13456555554 44433222111110
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
....++++|||+.|+.+.. ....|.++++
T Consensus 81 ---~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~ 109 (330)
T PRK11028 81 ---SPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPL 109 (330)
T ss_pred ---CceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEE
Confidence 1347889999999987611 1233555555
Q ss_pred --CCee---eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccc
Q 002164 322 --DGTV---KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 322 --~g~~---~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~ 394 (958)
+|.. ...... .......++|||+++++.... .+.|.+||++. +.......... ..+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~--- 172 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV--- 172 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC---
Confidence 3321 111111 334566799999999877643 34899999975 32211100000 000
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec---c------ccCceeeec
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---L------RYGGISWCD 465 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---~------~~~~~~~sp 465 (958)
...+++.+.|+|||+.++... ...+.|.++++++ .+++.+.+.... . ....+.++|
T Consensus 173 --~g~~p~~~~~~pdg~~lyv~~------------~~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 173 --EGAGPRHMVFHPNQQYAYCVN------------ELNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred --CCCCCceEEECCCCCEEEEEe------------cCCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 013567899999999887741 1245677777521 123333321111 0 112377999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
||++|+.. +...+...+|.++.+++ ....+-...... . ...+.++|||++|+...
T Consensus 238 dg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~-~----p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 238 DGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET-Q----PRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc-c----CCceEECCCCCEEEEEE
Confidence 99988775 44333355666655542 111111111110 0 01178999999988765
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-10 Score=122.65 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=120.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (958)
.|.||++||.+.... .| ...+..| +.+|.|++ .|.+|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQAY-----------SY----RKVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999642211 11 1223344 46899999 6667888775432 1234556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC--CCCC------------cc-----
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQ----- 804 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~~~~------------~~----- 804 (958)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +.
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6665554 235799999999999999999999999999999987642110 0000 00
Q ss_pred -------c--------cc----chhhhc----H----HHHHhcC-cc-------c---ccCCCCCCEEEEeeCCCCCCCC
Q 002164 805 -------N--------ED----RTLWEA----T----STYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 805 -------~--------~~----~~~~~~----~----~~~~~~s-p~-------~---~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
. .. ..++.. . ..+..+. .+ . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 0 00 000000 0 0000000 00 0 013578999999999999988
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
....+++.+.. ..+++++|+++|.+. .+..+++.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 458899999999875 5677888888888875
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-09 Score=109.51 Aligned_cols=220 Identities=19% Similarity=0.171 Sum_probs=126.8
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+++.++.. . ......+.+. ..+.-..+||.|-+||- ++...+|.+|+....+-..-.+.+ .+-
T Consensus 40 sv~ir~i~~-~--~~~~iYtEH~--~~vtVAkySPsG~yiAS---------GD~sG~vRIWdtt~~~hiLKnef~--v~a 103 (603)
T KOG0318|consen 40 SVIIRNIDN-P--ASVDIYTEHA--HQVTVAKYSPSGFYIAS---------GDVSGKVRIWDTTQKEHILKNEFQ--VLA 103 (603)
T ss_pred EEEEEECCC-c--cceeeecccc--ceeEEEEeCCCceEEee---------cCCcCcEEEEeccCcceeeeeeee--ecc
Confidence 678888843 1 2233344332 35677899999998877 566778888886553221111111 112
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG 323 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g 323 (958)
+.+..++|+.||++|+... +++. ...+.+..|.+.
T Consensus 104 G~I~Di~Wd~ds~RI~avG----------------------EGre-----------------------rfg~~F~~DSG~ 138 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVG----------------------EGRE-----------------------RFGHVFLWDSGN 138 (603)
T ss_pred cccccceeCCCCcEEEEEe----------------------cCcc-----------------------ceeEEEEecCCC
Confidence 2377999999999999761 1110 234455655421
Q ss_pred eeeecCCC-ccccccccCCCCc-EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccc----cc
Q 002164 324 TVKEIGPP-AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFN----SV 397 (958)
Q Consensus 324 ~~~~l~~~-~~~~~~~~SpDGk-~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~----~~ 397 (958)
..-.++.. ..+.+.+|-|--- +|+..+++ +.+-++ +..|+.|. .+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdD-------------n~v~ff----------------eGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDD-------------NTVAFF----------------EGPPFKFKSSFREH 189 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCC-------------CeEEEe----------------eCCCeeeeeccccc
Confidence 22233332 3344444444322 22222211 112111 11222111 11
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEE
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (958)
...+..+.|||||+..+-. +.++.++++|- .+|.+.-.|. .+.+.+..++||||+++++..+
T Consensus 190 skFV~~VRysPDG~~Fat~-------------gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATA-------------GSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ccceeeEEECCCCCeEEEe-------------cCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence 2345778999999987663 56778999984 4555566665 4566788899999999999887
Q ss_pred eccccceEEEEEcCCC
Q 002164 475 WYKTRRTRTWVISPGS 490 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~ 490 (958)
.+.+ .+||.+...+
T Consensus 255 aDkt--~KIWdVs~~s 268 (603)
T KOG0318|consen 255 ADKT--IKIWDVSTNS 268 (603)
T ss_pred CCce--EEEEEeeccc
Confidence 7766 7888887654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-10 Score=128.94 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=188.0
Q ss_pred CCCCceecCCCCEEEEEecCCC---------C--CchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc
Q 002164 110 PLPALSFSPQRDKILFLKRRAL---------P--PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~ 178 (958)
.+....|||||+.++....+.. . .+.++.++...+..+.+++++......+.+..|+||+++.++ ..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~ 238 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RN 238 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eE
Confidence 4556789999999988765521 1 344556667777888899998877777778899999995543 34
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+.+++ ..+....|+|+|+.|+... ....|.+|++.+|+..+........ +..+++++||..|
T Consensus 239 ~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~l 303 (456)
T KOG0266|consen 239 LKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNLL 303 (456)
T ss_pred EEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCEE
Confidence 56666644 5789999999997777644 4678889999988877666555543 7789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCC--c
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP--A 332 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~--~ 332 (958)
+... ....|.++|+ +|.. +.+... .
T Consensus 304 ~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 304 VSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred EEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCCC
Confidence 9661 2245778888 7762 333333 2
Q ss_pred -cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 -VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 -~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.+....|||||++|+....+ +.+.+|++... ..+....+.... .....+..+++|
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d-------------~~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLD-------------RTLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTGG 391 (456)
T ss_pred CceeEEEECCCCcEEEEecCC-------------CeEEEEEccCCcceeeecccCCcc----------eeEecccccCCC
Confidence 46889999999999988743 38999999844 334433332110 112234457778
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+.++.. .....|++|+. ..+.....+..+ ...+..+.|+|....++..+.......++|..
T Consensus 392 ~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 777663 44567899996 234455555555 56677889999999998887544433555543
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-11 Score=129.66 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=109.9
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
|.+.+|.|+++|. +|+|.+...........+|+.+.++.+ + + ++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~Dl---~G~g~s~~~~~~~~~~a~dl~~ll~~l---~-l--~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDF---IGADGSLDVPIDTADQADAIALLLDAL---G-I--ARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeC---CCCCCCCCCCCCHHHHHHHHHHHHHHc---C-C--CcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 4356799999555 466655332222344566666555443 2 2 34 57999999999999999999999999
Q ss_pred EEEeccCCCCCCCC--CC------------------------------cccc--cchhhh------------cHH-----
Q 002164 787 GIARSGAYNRTLTP--FG------------------------------FQNE--DRTLWE------------ATS----- 815 (958)
Q Consensus 787 ~v~~~~~~~~~~~~--~~------------------------------~~~~--~~~~~~------------~~~----- 815 (958)
+|++++........ +. +... ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998653211000 00 0000 000000 000
Q ss_pred ----HHHhcCc-------------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCccC
Q 002164 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (958)
Q Consensus 816 ----~~~~~sp-------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~ 877 (958)
.....++ ...+.++++|+|+++|++|..+| +..++++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 11246788999999999999998 8888888776632 258889985 89987
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002164 878 AARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (958)
. .+....+...+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567788888899998763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-09 Score=103.22 Aligned_cols=259 Identities=12% Similarity=0.141 Sum_probs=165.9
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
..+.|+++. +.+....|++|+++|+-.+. ...|.+||.-+.......+.+... +-.++++|.|+.
T Consensus 47 ~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~ 111 (343)
T KOG0286|consen 47 TRRTLKGHL--NKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNF 111 (343)
T ss_pred eEEEecccc--cceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCe
Confidence 356677643 67999999999999998664 668999998876555555555544 678999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CC---eeeecCCC
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP 331 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g---~~~~l~~~ 331 (958)
++...-+ ..=.||.+.. +| ..+.|...
T Consensus 112 VAcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 112 VACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred EEecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCc
Confidence 9987100 1112333332 22 23345444
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec-C
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-D 409 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-D 409 (958)
+.+....|-+|+. |+..+. +.+.-+||++++....... ++...+-++.++| |
T Consensus 145 tgylScC~f~dD~~-ilT~SG-------------D~TCalWDie~g~~~~~f~------------GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNH-ILTGSG-------------DMTCALWDIETGQQTQVFH------------GHTGDVMSLSLSPSD 198 (343)
T ss_pred cceeEEEEEcCCCc-eEecCC-------------CceEEEEEcccceEEEEec------------CCcccEEEEecCCCC
Confidence 5566667777665 444442 3488899999665433222 2224456788999 7
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+++.+-- +-....++||+ .++...+....++.++..+.|-|+|..++..+++.+ .++|.+..+
T Consensus 199 ~ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD 261 (343)
T KOG0286|consen 199 GNTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRAD 261 (343)
T ss_pred CCeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCC
Confidence 8765541 23445678886 566666667788899999999999998887776655 678777654
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
- ...++..... .. +-..+.||..|+.|+....+ ....+||.=.++..-+..
T Consensus 262 ~----~~a~ys~~~~-~~---gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 262 Q----ELAVYSHDSI-IC---GITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred c----EEeeeccCcc-cC---CceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEee
Confidence 3 2444443221 11 11127799999877665521 148899976666554443
Q ss_pred C
Q 002164 570 S 570 (958)
Q Consensus 570 ~ 570 (958)
+
T Consensus 313 G 313 (343)
T KOG0286|consen 313 G 313 (343)
T ss_pred c
Confidence 3
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=107.75 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=136.7
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
....+.++++.+..+-+.+..- + ..-++|++||.- ...+ ..+....+..+++.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-----g---s~e~vvlcHGfr-----------S~Kn--~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-----G---STEIVVLCHGFR-----------SHKN--AIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-----C---CceEEEEeeccc-----------cccc--hHHHHHHHHHHHhcCceEEE
Confidence 3456677777777766644321 1 256899999941 1111 11123456677889999999
Q ss_pred cCCCCCCCCCCcccchh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 718 GPTTPIIGEGDEEANDR--FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~--~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|+.|.|++.+.-. .+..+.+|+..+++++..... ---+|+|||-||.+++..+.+.++ +.-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 88889998865422 234566999999999876322 124789999999999999999966 788888888776
Q ss_pred CCCC------C--------CCccc------ccchhhhcHHHHHhc--CcccccCC--CCCCEEEEeeCCCCCCCCChHHH
Q 002164 796 RTLT------P--------FGFQN------EDRTLWEATSTYVEM--SPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 796 ~~~~------~--------~~~~~------~~~~~~~~~~~~~~~--sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
.... + -++.. .....|...-..... +-.....+ .+||+|-+||..|.+|| .+.+
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 3221 0 01110 001112111111111 11111122 36899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
.++++.+.. .+|.++||++|.++..+
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh
Confidence 999888876 58999999999997554
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=124.85 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=53.0
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe-CCCCccCCCcccHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL-PFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~-p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+.+|++|+|+++|++|..+| +..++++.+.++.....++++.+ +++||... .++...+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456788999999999999998 89999999999876444455444 68999864 456677788888886
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=121.39 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=110.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (958)
.|.||++||.+.... .| ......| .+|.|++ .|.+|+|.+.... .......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~~-----------~w----~~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-----------DW----QPVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCChH-----------HH----HHHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 367999999642211 11 1223334 4799999 5666777764432 123344555554444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCC-----------CCC--ccccc-------
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~-----------~~~--~~~~~------- 807 (958)
. . +.+++.++||||||.+++.++.++|+ +++++++.++....... .+. +....
T Consensus 62 ~---~---~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 S---Y---NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred H---c---CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 3 2 33689999999999999999999865 49999887654321100 000 00000
Q ss_pred ---chhh-----hcHHH----------------HHhc------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 808 ---RTLW-----EATST----------------YVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 808 ---~~~~-----~~~~~----------------~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
.... ..... +... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 0000 00000 0000 1112456789999999999997532 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
. ..++++++++||.+. .++.+.+.+.+.+||.+
T Consensus 209 ~-----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 L-----ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred h-----cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 468999999999874 56678888888888864
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-10 Score=111.06 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=116.2
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~ 733 (958)
..++.|.. .+.||+||+.||.. + ...++....+.+|++||+|+.++.....+.+
T Consensus 6 l~v~~P~~-----~g~yPVv~f~~G~~---------~------~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~------ 59 (259)
T PF12740_consen 6 LLVYYPSS-----AGTYPVVLFLHGFL---------L------INSWYSQLLEHVASHGYIVVAPDLYSIGGPD------ 59 (259)
T ss_pred eEEEecCC-----CCCcCEEEEeCCcC---------C------CHHHHHHHHHHHHhCceEEEEecccccCCCC------
Confidence 46778865 45699999999942 1 1112345677899999999997754433321
Q ss_pred hhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEeccCCCCCCCC
Q 002164 734 RFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~--~------~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~~ 800 (958)
....++++.+.++|+.+. . .+|-+|++|+|||.||-+|..++..+ +.+|++++.+.|+-......
T Consensus 60 --~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~ 137 (259)
T PF12740_consen 60 --DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGS 137 (259)
T ss_pred --cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccccccccc
Confidence 235677788889998772 1 25888999999999999999988876 45899999999975321110
Q ss_pred CCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCC------CCChH--HHHHHHHHHHhCCCcEEEEEeCC
Q 002164 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNS------GTLTM--QSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v------~~~~~--~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
. . .+..+ .+.| ..-+...|+||+...-.... +|.+. +-.+||++++. +.-.++.++
T Consensus 138 ~-----~-----~P~v~-~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~ 201 (259)
T PF12740_consen 138 Q-----T-----EPPVL-TYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKD 201 (259)
T ss_pred C-----C-----CCccc-cCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCC
Confidence 0 0 00000 0011 11123589999986666411 12233 34788888754 567777899
Q ss_pred CCcc
Q 002164 873 ESHG 876 (958)
Q Consensus 873 ~~H~ 876 (958)
.||.
T Consensus 202 ~GH~ 205 (259)
T PF12740_consen 202 YGHM 205 (259)
T ss_pred CCch
Confidence 9996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-10 Score=113.47 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=128.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
..+.+..||++|++||..+ .+...-||.+..++.- ...+..... .+..+.||||.++|+...
T Consensus 225 dEVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg---- 288 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACG---- 288 (519)
T ss_pred CcEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecC----
Confidence 4688999999999999865 3345567777665531 122222222 267899999999888651
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---ccccccccCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPD 342 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpD 342 (958)
....+++.|+ +|+.+..... ..+.+.+|-||
T Consensus 289 ---------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 289 ---------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred ---------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 1122778888 8877766654 45678899999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|.+++..+.+ ..+..||++|+....-... . ...+..++.++||++++..
T Consensus 324 g~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gv---r---------~~~v~dlait~Dgk~vl~v------ 372 (519)
T KOG0293|consen 324 GFRFVTGSPD-------------RTIIMWDLDGNILGNWEGV---R---------DPKVHDLAITYDGKYVLLV------ 372 (519)
T ss_pred CceeEecCCC-------------CcEEEecCCcchhhccccc---c---------cceeEEEEEcCCCcEEEEE------
Confidence 9998877743 4799999998753221110 0 0234678999999998875
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
.....+.+++. +...-+.+......+.++..|.||+.++..-...+ .++|.+.
T Consensus 373 -------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe--i~LWDl~ 425 (519)
T KOG0293|consen 373 -------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQE--IHLWDLE 425 (519)
T ss_pred -------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccCe--eEEeecc
Confidence 23445677764 33333435555667788999999998776554333 5566554
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=119.50 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=106.8
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
|++ ...|.+ +|..|+|++..+.-. .........+.++ |-++++. +++.|+|||+||+++..+|.++|++|
T Consensus 113 La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L---~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 113 LAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGL---EKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCC---cceeEeeccchHHHHHHHHHhChHhh
Confidence 444 788988 777888888654211 1111222333343 4444443 59999999999999999999999999
Q ss_pred eEEEEeccCC--CCC-CCC-------CCc-----c-cccchh-----------------------------hhcH-----
Q 002164 785 CCGIARSGAY--NRT-LTP-------FGF-----Q-NEDRTL-----------------------------WEAT----- 814 (958)
Q Consensus 785 ~a~v~~~~~~--~~~-~~~-------~~~-----~-~~~~~~-----------------------------~~~~----- 814 (958)
+.+|+++|.- ... ..+ ..+ . ....++ .++.
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999998741 100 000 000 0 000000 0000
Q ss_pred --------------------HHHHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 815 --------------------STYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 815 --------------------~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
-.+.+...++.+..++ +|+++|+|++|++- ...+.++...+ ....++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~--~~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSL--MKEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHh--hcccceEEEecC
Confidence 0001111123344455 89999999999874 35566666665 234689999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 002164 873 ESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+||.+. ..+.+.+.+.+..+++.
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999975 45566677777777654
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=123.55 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=58.9
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+.+|++|+|+|+|++|..+| +..++++.+.+...+..+++++++ ++||... .+....+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999998 899999999998877777888785 8999864 566677888899998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-10 Score=125.08 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=141.4
Q ss_pred CceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe
Q 002164 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
+..+.+.++ .+.+...+||||.+.|+-++ +...+.+|.+++-.......++.. .+..++|+|-|-
T Consensus 442 ~~~~~L~GH--~GPVyg~sFsPd~rfLlScS---------ED~svRLWsl~t~s~~V~y~GH~~----PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 442 GTSRTLYGH--SGPVYGCSFSPDRRFLLSCS---------EDSSVRLWSLDTWSCLVIYKGHLA----PVWDVQFAPRGY 506 (707)
T ss_pred ceeEEeecC--CCceeeeeecccccceeecc---------CCcceeeeecccceeEEEecCCCc----ceeeEEecCCce
Confidence 445667664 46899999999999998865 244555555556544444443332 367888999997
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-cccc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYT 335 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~ 335 (958)
+++..+.+ ++..||..+-+...|.+..+ ..+.
T Consensus 507 YFatas~D-----------------------------------------------~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 507 YFATASHD-----------------------------------------------QTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred EEEecCCC-----------------------------------------------ceeeeeecccCCchhhhcccccccc
Confidence 77755111 34457766654444444444 7777
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.+.|.|++.+++..+.+ ..+.+||+.++...++.. ++...+..++|||+|++|+-
T Consensus 540 cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~------------GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFT------------GHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEec------------CCCCceEEEEEcCCCceEee
Confidence 89999999999877643 489999998655444432 22245678999999999887
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
- +..+.|.+||+ ..|....++..+.+.+.++.||.||..|+....+.. .+||.+.
T Consensus 595 g-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--V~lWD~~ 649 (707)
T KOG0263|consen 595 G-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS--VRLWDLT 649 (707)
T ss_pred c-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe--EEEEEch
Confidence 2 55667889996 344455566666778889999999999987765443 6677443
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-11 Score=127.39 Aligned_cols=214 Identities=26% Similarity=0.350 Sum_probs=122.2
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCC-c-CcHHHHHHHHCC----cEEEEcCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-I-GSTSVLLWLARG----FAILGGPTTP 722 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~la~~G----~~vl~~~~~~ 722 (958)
|.....++|+|++|++. .++|+|+++||.. .+.. . .......+++.| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~--~~~PvlylldG~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPS--KPYPVLYLLDGQS---------------GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTT--TTEEEEEEESHTT---------------HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCC--CCCEEEEEccCCc---------------cccccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 66788999999998444 3699999999930 0100 0 011222334443 4444433322
Q ss_pred CC-CCCC--------ccc-----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 723 II-GEGD--------EEA-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 723 ~~-G~G~--------~~~-----~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
.. .++. ... ...+..... .+.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLT---EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHH---THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehh---ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 21 1100 000 111222222 356667777777777779999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccc-----cCCCCCCEEEEeeCCCCCCCC--------ChHHHHHHH
Q 002164 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMS-----ANKLKKPILLVHGEEDNNSGT--------LTMQSDRFF 855 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~~~~P~Lii~G~~D~~v~~--------~~~~~~~~~ 855 (958)
+++|.++.....|+. ..... |...++... ...-..++++..|+.|..... ......++.
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~ 216 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEA------WKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELA 216 (251)
T ss_dssp EESEESETTHCHHHH--STCGH------HGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHH
T ss_pred ccCccccccccccCc--CCcHH------hhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhH
Confidence 999986643211211 01111 112222111 122346889999999983210 012334455
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+.|+..|.+..+..++| +|... .....+...+.||
T Consensus 217 ~~l~~~g~~~~~~~~~G-~H~~~---~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 217 QLLKAKGIPHTYHVFPG-GHDWA---YWRRRLPDALPWM 251 (251)
T ss_dssp HHCCCEECTTESEEEHS-ESSHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEecC-ccchh---hHHHHHHHHHhhC
Confidence 55666678888889995 77642 2344445555554
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-10 Score=119.09 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=113.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||..... ..| ......|.++||.|++ .+.+|+|.+.... .......+++.+.
T Consensus 18 ~p~vvliHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGGS-----------WCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCCc-----------CcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 58899999953211 111 1334567778999999 5666777653221 2233444444443
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC-CCC-------C--------------CCcc
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~-------~--------------~~~~ 804 (958)
+ .+.. ..+++.++||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i---~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 L---SSLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred H---HhcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 3 3332 1368999999999999999999999999999998653210 000 0 0000
Q ss_pred c----ccchh---------hh-cHH---H-HHh------cCccc------ccCCC-CCCEEEEeeCCCCCCCCChHHHHH
Q 002164 805 N----EDRTL---------WE-ATS---T-YVE------MSPFM------SANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (958)
Q Consensus 805 ~----~~~~~---------~~-~~~---~-~~~------~sp~~------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~ 853 (958)
. ..... +. .+. . +.. ...+. ...++ ++|+++|.|++|..+| ++..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 000 0 000 01111 12344 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.+.+.. .+++.++ +||... .+....+...|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 8776543 2677777 799863 4555555555555443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=114.10 Aligned_cols=251 Identities=12% Similarity=0.057 Sum_probs=144.7
Q ss_pred ceEEEEEc-CCeeeecC-CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE--EEeccCCcccc
Q 002164 314 TQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~-~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~ 389 (958)
.+|+++|+ +|+...-. .......+.|++||+.++|+......... ....+.+++++.+.+... +.|...+...
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~- 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP- 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC-
Confidence 56999999 88443211 11222348999999999999865431100 112356899998875432 2333322110
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC-----CCceEEEeecccc-Cceee
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISW 463 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-----~~~~~l~~~~~~~-~~~~~ 463 (958)
...-.+..|+||+.|++..... .....+|++++ .. ...+.+....... ..+..
T Consensus 227 ---------~~~~~~~~s~d~~~l~i~~~~~---------~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 227 ---------FWFVSVSRSKDGRYLFISSSSG---------TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp ---------TSEEEEEE-TTSSEEEEEEESS---------SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred ---------cEEEEEEecCcccEEEEEEEcc---------ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEc
Confidence 1124678999999888753331 11367999996 33 2455664432222 22333
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCC-cE-EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEc
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVA-PR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (958)
. |..+++.++.+..+.+|+.++++..... .. .+......... -.++..+.+|+.....
T Consensus 286 ~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~Lvl~~~~----------- 345 (414)
T PF02897_consen 286 H--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSLFKDYLVLSYRE----------- 345 (414)
T ss_dssp E--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEEETTEEEEEEEE-----------
T ss_pred c--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEEECCEEEEEEEE-----------
Confidence 3 7778888887777789999999886321 12 23222211100 2345556666666532
Q ss_pred cCCCCCCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 542 GNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 542 ~~~~~~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
...++|.++++. +.....+...... .+. ..+..++++.+++..++...|+.+|.+|+.+++
T Consensus 346 -------~~~~~l~v~~~~~~~~~~~~~~p~~g----~v~-------~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 346 -------NGSSRLRVYDLDDGKESREIPLPEAG----SVS-------GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -------TTEEEEEEEETT-TEEEEEEESSSSS----EEE-------EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -------CCccEEEEEECCCCcEEeeecCCcce----EEe-------ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 234589999998 5555555443321 111 123456788999999999999999999999999
Q ss_pred eeEeec
Q 002164 621 SCQITD 626 (958)
Q Consensus 621 ~~~Lt~ 626 (958)
.+++++
T Consensus 408 ~~~~k~ 413 (414)
T PF02897_consen 408 LTLLKQ 413 (414)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-09 Score=101.06 Aligned_cols=269 Identities=9% Similarity=0.077 Sum_probs=162.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..+.|.-||.++|..+.+ ..+.+|++..+ ...+.+..-.++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh~ 64 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGHT 64 (313)
T ss_pred hcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCCC
Confidence 357789999999999988775 35678877442 111122111123
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+-+..|+|-..-++++.. +...|.+||...++....+....+. ....|+|||+++++..
T Consensus 65 ~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~en-----i~i~wsp~g~~~~~~~------ 125 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGEN-----INITWSPDGEYIAVGN------ 125 (313)
T ss_pred cchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCcc-----eEEEEcCCCCEEEEec------
Confidence 46788899986665655542 4668888998888887666554442 3688999999999871
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|-.++. +-+...-.+. ..+....|+-++. +
T Consensus 126 -------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~ 161 (313)
T KOG1407|consen 126 -------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-L 161 (313)
T ss_pred -------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-E
Confidence 1123555555 3332222222 4456778885554 4
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+|..+.. +.+.|..-.. +.+..|..++ .+---+.|+|||++++.-
T Consensus 162 Fflt~Gl------------G~v~ILsypsLkpv~si~AH~-------------snCicI~f~p~GryfA~G--------- 207 (313)
T KOG1407|consen 162 FFLTNGL------------GCVEILSYPSLKPVQSIKAHP-------------SNCICIEFDPDGRYFATG--------- 207 (313)
T ss_pred EEEecCC------------ceEEEEeccccccccccccCC-------------cceEEEEECCCCceEeec---------
Confidence 5554332 2455543321 1122222222 233468999999998872
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC-c
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS-E 504 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 504 (958)
+....+-+||++ +=--.+.++..++.++.++||-||+.|+.++++.- |=+....+|+ .+++..- .
T Consensus 208 ----sADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~----IDIA~vetGd----~~~eI~~~~ 273 (313)
T KOG1407|consen 208 ----SADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDHF----IDIAEVETGD----RVWEIPCEG 273 (313)
T ss_pred ----cccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccce----EEeEecccCC----eEEEeeccC
Confidence 333456678752 22345777889999999999999999998864321 2233334431 1111111 1
Q ss_pred cccCCCCCCceEeccCCceEEEEeee
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
..+. ++|.|.--.|+|...+
T Consensus 274 ~t~t------VAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFT------VAWHPKRPLLAYACDD 293 (313)
T ss_pred Ccee------EEecCCCceeeEEecC
Confidence 1222 7899999999998854
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-09 Score=119.99 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=154.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....+||||+.++.... ...+.++...+++ ..+..... ...+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l~~h----~~~v~~~~fs~d~~~l~s~s----- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLRELSGH----TRGVSDVAFSPDGSYLLSGS----- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhcccccc----ccceeeeEECCCCcEEEEec-----
Confidence 5666899999999888542 4456666665555 22221112 22378999999999887651
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CC-eeeecCCC-ccccccccCCCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g-~~~~l~~~-~~~~~~~~SpDG 343 (958)
...+|.++++ .+ ..+.+..+ ..++..+|+|+|
T Consensus 223 --------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 223 --------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred --------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC
Confidence 1234666666 33 34555544 778999999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+.|+..+. ++.+.+||+.+++. +.|..+. .++..+.|++||+.|+..
T Consensus 259 ~~i~Sgs~-------------D~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~------ 306 (456)
T KOG0266|consen 259 NLLVSGSD-------------DGTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA------ 306 (456)
T ss_pred CEEEEecC-------------CCcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc------
Confidence 77666653 34899999997544 4444332 456789999999988773
Q ss_pred CCcccccccCCeEEEEeCCCCCCCC---ceEEEeecc--ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
+.++.+.+||+ .++. ...+..... .+..+.|+|+|++|+....+.. .++|.+.... ...
T Consensus 307 -------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~----~~~ 370 (456)
T KOG0266|consen 307 -------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK----SVG 370 (456)
T ss_pred -------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc----cee
Confidence 44667899996 4444 234433333 3678999999999988765433 5566555322 122
Q ss_pred EeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+......++.. .. +..+++|++++....+ ..+++||+.++...+...
T Consensus 371 ~~~~~~~~~~~~-~~--~~~~~~~~~i~sg~~d---------------------~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 371 TYTGHSNLVRCI-FS--PTLSTGGKLIYSGSED---------------------GSVYVWDSSSGGILQRLE 418 (456)
T ss_pred eecccCCcceeE-ec--ccccCCCCeEEEEeCC---------------------ceEEEEeCCccchhhhhc
Confidence 222222211110 00 2347888888877632 259999998766554443
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=113.99 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=147.5
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
.-++.-++..||..+..-++.+..-.. .+.+..|+||++||-...+ ...+-...+....++||.++
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S-------------~~~YVr~lv~~a~~~G~r~V 158 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGS-------------HESYVRHLVHEAQRKGYRVV 158 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCC-------------hhHHHHHHHHHHHhCCcEEE
Confidence 334555677899999888887654321 1224579999999943211 11222234445567999999
Q ss_pred EcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEecc
Q 002164 717 GGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSG 792 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~ 792 (958)
..+. +|.|.+.- +.-+-....+|+.+++++++++..- .++.++|.||||.+...++++..+ .+.|+++++-
T Consensus 159 VfN~---RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~--a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~ 233 (409)
T KOG1838|consen 159 VFNH---RGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQ--APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCN 233 (409)
T ss_pred EECC---CCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCC--CceEEEEecchHHHHHHHhhhccCCCCceeEEEEec
Confidence 9444 45554432 2333345688999999999998432 489999999999999999987532 2445555444
Q ss_pred CCCCCC---------CCC----------------------------Ccccccc---hh-----------hhcHHHHHhcC
Q 002164 793 AYNRTL---------TPF----------------------------GFQNEDR---TL-----------WEATSTYVEMS 821 (958)
Q Consensus 793 ~~~~~~---------~~~----------------------------~~~~~~~---~~-----------~~~~~~~~~~s 821 (958)
.+|... ... ....... .+ -.-.+.|.+.|
T Consensus 234 Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aS 313 (409)
T KOG1838|consen 234 PWDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKAS 313 (409)
T ss_pred cchhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcc
Confidence 444210 000 0000000 00 01126678889
Q ss_pred cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC-C-C-cccHHHHHHH-HHHHHHHh
Q 002164 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-A-A-RESIMHVLWE-TDRWLQKY 897 (958)
Q Consensus 822 p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~-~-~-~~~~~~~~~~-i~~fl~~~ 897 (958)
+...+++|++|+|+++..+|+++| . .+.-.-+ .++ ...+-+++-..+||.- . + ..+..-++++ +.+|+...
T Consensus 314 s~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~~~-~~~-np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 314 SSNYVDKIKVPLLCINAADDPVVP--E-EAIPIDD-IKS-NPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred hhhhcccccccEEEEecCCCCCCC--c-ccCCHHH-Hhc-CCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 999999999999999999999997 3 3332222 222 3367777777789952 1 1 1144556666 77887766
Q ss_pred hc
Q 002164 898 CV 899 (958)
Q Consensus 898 l~ 899 (958)
..
T Consensus 389 ~~ 390 (409)
T KOG1838|consen 389 IF 390 (409)
T ss_pred Hh
Confidence 53
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.5e-09 Score=108.76 Aligned_cols=266 Identities=15% Similarity=0.136 Sum_probs=171.7
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
...+....|+-||..||+.. ..+.+.+|+.+|+....+..+.+. +-++.|..+|.+|+...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~----- 295 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG----- 295 (524)
T ss_pred cCCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc-----
Confidence 34788899999999999944 577888889888777666554443 77999999999999661
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk 344 (958)
....+.++|. +|+..+.... ....++.|--+.+
T Consensus 296 --------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 296 --------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred --------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 1234567777 8876665544 2224567765544
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.. ..+ .++.|+++.++.+.+ +.+.. +...+..+.|.|-|+.|+--
T Consensus 332 F~-ts~-------------td~~i~V~kv~~~~P~~t~~G-------------H~g~V~alk~n~tg~LLaS~------- 377 (524)
T KOG0273|consen 332 FA-TSS-------------TDGCIHVCKVGEDRPVKTFIG-------------HHGEVNALKWNPTGSLLASC------- 377 (524)
T ss_pred Ee-ecC-------------CCceEEEEEecCCCcceeeec-------------ccCceEEEEECCCCceEEEe-------
Confidence 32 222 134688888875543 22222 22456789999999877653
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCc---------eEEEEEeccccceEEEEEcCCCCCCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---------~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
+.+..+-+|.. .++.....+..+...+..+.|||+|. .|+..+.+. .+..+|...+ .
T Consensus 378 ------SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds----tV~lwdv~~g--v 443 (524)
T KOG0273|consen 378 ------SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS----TVKLWDVESG--V 443 (524)
T ss_pred ------cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC----eEEEEEccCC--c
Confidence 44556777764 23444455555555566778888754 344443332 2444455553 4
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccc
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~ 574 (958)
+...+....+.+|+ ++|||+|++++++..+ ..|.+|+..+++..+-..+.+.+
T Consensus 444 ~i~~f~kH~~pVys------vafS~~g~ylAsGs~d---------------------g~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYS------VAFSPNGRYLASGSLD---------------------GCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred eeEeeccCCCceEE------EEecCCCcEEEecCCC---------------------CeeEeccccchheeEeecCCCeE
Confidence 55566667777887 8999999999988732 15889999998877666555420
Q ss_pred ccceeEeecCCCccccccccCCEEEEEEe
Q 002164 575 YYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
+ ++.|+.+|+++.....
T Consensus 497 -f-----------el~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 497 -F-----------ELCWNAAGDKLGACAS 513 (524)
T ss_pred -E-----------EEEEcCCCCEEEEEec
Confidence 1 2467777866654443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-08 Score=104.13 Aligned_cols=306 Identities=13% Similarity=0.168 Sum_probs=174.8
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
.|..+++--.+ .-..+.|||-|.+|+..-.+ +|-+|- | .
T Consensus 201 ~p~~ie~RenW-Tetyv~wSP~GTYL~t~Hk~----------------------------------GI~lWG----G--~ 239 (698)
T KOG2314|consen 201 EPSLIEERENW-TETYVRWSPKGTYLVTFHKQ----------------------------------GIALWG----G--E 239 (698)
T ss_pred chhhhhhhhcc-eeeeEEecCCceEEEEEecc----------------------------------ceeeec----C--c
Confidence 34445544444 34568999999999877653 566763 2 1
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeecc--ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
.-.++..+.+ ..+....|||.-++|+.-+.... ..++++..+|.+||+.+|...+-........ .....+.||-|+
T Consensus 240 ~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~Dd 317 (698)
T KOG2314|consen 240 SFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDD 317 (698)
T ss_pred cHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCC
Confidence 2222322322 25788999999999987654331 2334567899999999998776544322110 012378899999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCCcccc
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYT 335 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~ 335 (958)
++++....+. ..|+ ....+.++ +++.-.+ .++.
T Consensus 318 Ky~Arm~~~s-------------isIy-----------------------------Etpsf~ll--d~Kslki---~gIr 350 (698)
T KOG2314|consen 318 KYFARMTGNS-------------ISIY-----------------------------ETPSFMLL--DKKSLKI---SGIR 350 (698)
T ss_pred ceeEEeccce-------------EEEE-----------------------------ecCceeee--cccccCC---cccc
Confidence 9999772100 0000 11112233 3333333 5788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+.|||-+..|||-..... ..+..+.+..+-.+. .+...-+.. ....+.|..+|.+|.
T Consensus 351 ~FswsP~~~llAYwtpe~~--------~~parvtL~evPs~~~iRt~nlfnV-------------sDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPETN--------NIPARVTLMEVPSKREIRTKNLFNV-------------SDCKLHWQKSGDYLC 409 (698)
T ss_pred CcccCCCcceEEEEccccc--------CCcceEEEEecCccceeeeccceee-------------eccEEEeccCCcEEE
Confidence 9999999999999874321 123456666655332 222111111 123578999999999
Q ss_pred EEEEeccCCCcccccccCC--eEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc-ccceEEEEEcCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~~~~~~ 491 (958)
+-+++...+.. .+... .|+.++ +-..+.........+-.++|-|.|.+.+..+... ..+.+.|-+....+
T Consensus 410 vkvdR~tK~~~---~g~f~n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 410 VKVDRHTKSKV---KGQFSNLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred EEEEeeccccc---cceEeeEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 98776543220 01111 355554 2222222233344566789999999887765433 23466777775443
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
++..+......... .+.|||.|++++....
T Consensus 483 --~~~lVk~~dk~~~N------~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 483 --KPSLVKELDKKFAN------TVFWSPKGRFVVVAAL 512 (698)
T ss_pred --chhhhhhhcccccc------eEEEcCCCcEEEEEEe
Confidence 33333211111111 1779999999988763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-08 Score=107.76 Aligned_cols=226 Identities=8% Similarity=0.019 Sum_probs=114.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eE-EEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
+....+.++|||++|+..... .+.+.+|+++.. .. +.+...+. ..++..+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCC
Confidence 345678899999999887632 347888988632 11 11111110 023456789999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-----EE-eeccccCceeeecCCceEEEEEeccccceEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-----LH-KLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-----l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
|+.+++. + ...+.|++++++ ..+.... +. ........+.|+|||++++...... +...+
T Consensus 137 g~~l~v~-~-----------~~~~~v~v~d~~--~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-~~v~v 201 (330)
T PRK11028 137 NRTLWVP-C-----------LKEDRIRLFTLS--DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-SSVDV 201 (330)
T ss_pred CCEEEEe-e-----------CCCCEEEEEEEC--CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-CEEEE
Confidence 9988763 1 234678888862 2222211 11 1122245689999999887764433 22445
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
|.++..++..+....................+.++|||++++.... ....|.+|+++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------------------~~~~I~v~~i~~~~ 261 (330)
T PRK11028 202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--------------------TASLISVFSVSEDG 261 (330)
T ss_pred EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--------------------CCCeEEEEEEeCCC
Confidence 5555333211111111111111000000112668999998776531 11246677664321
Q ss_pred -eEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEee
Q 002164 564 -KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (958)
Q Consensus 564 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt 625 (958)
...+...... ...-....+++||+.+++..... ..-.+|.++..+|..+.+.
T Consensus 262 ~~~~~~~~~~~---------~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 262 SVLSFEGHQPT---------ETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETGLLTELG 314 (330)
T ss_pred CeEEEeEEEec---------cccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCCcEEEcc
Confidence 1122111100 00111357899999888876532 2234555555566655544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-08 Score=98.02 Aligned_cols=252 Identities=9% Similarity=0.069 Sum_probs=146.2
Q ss_pred EEEEEc-CCeeeecCCC----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCC-ccc
Q 002164 316 LVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLP-LAE 388 (958)
Q Consensus 316 l~~~~~-~g~~~~l~~~----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~-~~~ 388 (958)
-|.+|- +|....+... .....+++++||++|+...-. .+.|.++.++. +.+..+.... ...
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------------~g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------------SGSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred EEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------------CceEEEEEcccCCccccceeeeecCC
Confidence 445554 5766655432 333678999999988877633 24677777752 3332221110 001
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE----eeccccCceeee
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWC 464 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~~~s 464 (958)
..|. ......-.....++|||+.++.. + -+.++|+++++ +-++..... .....-+.+.|.
T Consensus 136 ~~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 136 SGPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred CCCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceEEEc
Confidence 1111 00111224567899999988763 1 23567888886 333333322 222234568999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCC
Q 002164 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (958)
|+|+..+...+-++ ...+|.++...++.+..+..+.-.++..+......+..||||++|+......
T Consensus 200 pn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~------------- 265 (346)
T COG2706 200 PNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH------------- 265 (346)
T ss_pred CCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-------------
Confidence 99987776655443 3678888876554444444444444444444455588899999887654221
Q ss_pred CCCCCCCCeEEEEECCCCceEEEec--CCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 545 ATPEGNIPFLDLFDINTGSKERIWE--SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 545 ~~~~~~~~~L~~~dl~~g~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
+.-.++.+|.++|+...+.. ..+. .. ..+.|+++|+.|++..+.... -.+|.+|..+|+.+
T Consensus 266 -----dsI~~f~V~~~~g~L~~~~~~~teg~----~P-------R~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~ 328 (346)
T COG2706 266 -----DSIAVFSVDPDGGKLELVGITPTEGQ----FP-------RDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLT 328 (346)
T ss_pred -----CeEEEEEEcCCCCEEEEEEEeccCCc----CC-------ccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEE
Confidence 12246666777776554422 1211 01 135788889888887775544 67899999999887
Q ss_pred Eeec
Q 002164 623 QITD 626 (958)
Q Consensus 623 ~Lt~ 626 (958)
.+..
T Consensus 329 ~~~~ 332 (346)
T COG2706 329 LLGR 332 (346)
T ss_pred eccc
Confidence 7664
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=106.42 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=107.2
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.|+|+|++|++.... +++..+.. ..+..+|+.++... .+...+. +...+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~------------------~~~~~~ks---~~~~~~l~~~~~~~----~~~~~i~-l~~~~~I 62 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQT------------------RVDKSGKS---YYGEFELFYLNEKN----IPVESIE-LKKEGPI 62 (194)
T ss_pred EEEEecccCCEEEEEEEE------------------eeccCcce---EEeeEEEEEEecCC----Cccceee-ccCCCce
Confidence 357799999999997752 02211111 11224566655432 3333333 2222359
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
...+|||+|+++|.+.. .....|.++++++.....+ +... ...+.|||+|++|+++....
T Consensus 63 ~~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~n------ 122 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFGN------ 122 (194)
T ss_pred EEEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEccC------
Confidence 99999999999988752 2234777788764333332 2222 45789999999999872100
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEe
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISS 350 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~ 350 (958)
..+.|.++|. +.+.-..........++|||||++|+...
T Consensus 123 ----------------------------------------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 123 ----------------------------------------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ----------------------------------------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 1244677777 44333222335567899999999999876
Q ss_pred ecCCccccccCCCCCceeEEEeccCceEEE
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~ 380 (958)
.. |..+.++.+.||+..|+....
T Consensus 163 t~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 163 TS-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ec-------cceeccccEEEEEecCeEeEe
Confidence 43 123345678899988875543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-09 Score=112.61 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=157.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC-CCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~-~~~~ 241 (958)
..+|+|+..+ +....|..+. ...+..+.|+++|++|+... ....|.+||....+..+-... ...+
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4799999765 5666665442 34789999999999999944 467888888775443333222 2222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+..++|. +..+.... +...|...|+
T Consensus 263 ----vg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEec-------------------------------------------------CCCcEEEEEE
Confidence 7789998 33344331 1122444444
Q ss_pred -CC-e-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccc
Q 002164 322 -DG-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 322 -~g-~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~ 396 (958)
.+ . ...+... ..+-...|++||++++-..++ +.+.|||..... ...++.+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H------------ 342 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEH------------ 342 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecc------------
Confidence 22 1 1112223 566788999999999877654 489999985332 2233332
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEec
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
...+..++|+|=-+.|+.. ||+ ..+..|..|+. .+++..........+.++.||+..+.|+.+...
T Consensus 343 -~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 343 -TAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred -ceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 2556789999977777663 111 33557888985 344433334455568889999999999998876
Q ss_pred cccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
..+...||.+..-. +......+...+.. +++||||+.|+.+..
T Consensus 409 s~n~i~lw~~ps~~----~~~~l~gH~~RVl~------la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 409 SENQITLWKYPSMK----LVAELLGHTSRVLY------LALSPDGETIVTGAA 451 (484)
T ss_pred CCCcEEEEeccccc----eeeeecCCcceeEE------EEECCCCCEEEEecc
Confidence 66567888886422 12222222222222 789999999988764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-09 Score=107.17 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=89.7
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
..+|||+|++||..++- .+.|.|..+ -+..+|-..- ..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~cl--dki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLCL--DKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHHH--HHhh
Confidence 67899999999998863 567776643 2333331111 2578
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..-|+.|..+|+-... . ...|.++++..-+-. ++-.++. ++....|||||+.|..++.
T Consensus 53 yieW~ads~~ilC~~y------k--~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tse-------- 111 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY------K--DPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSE-------- 111 (447)
T ss_pred heeeeccceeeeeeee------c--cceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeec--------
Confidence 8999999999987543 1 335666665543332 2222222 2778999999988886510
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
...+|-+..+ +.+...+..+ ..+..++|.|||++.+..
T Consensus 112 ----------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 112 ----------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred ----------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeee
Confidence 2234556666 5555555444 556788999999999988
Q ss_pred eec
Q 002164 350 SIH 352 (958)
Q Consensus 350 ~~~ 352 (958)
+.+
T Consensus 152 sRr 154 (447)
T KOG4497|consen 152 SRR 154 (447)
T ss_pred ecc
Confidence 744
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=124.49 Aligned_cols=235 Identities=13% Similarity=0.049 Sum_probs=139.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC---CCCCC--ceeeeccC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLG--QEIEIQGF 185 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~---dg~~~--~~~~lt~~ 185 (958)
+..++|||||+++|....+ +.|.||++.. ++... ....+.
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~~~~~~~~~~~-- 530 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGRDIHYPVVELA-- 530 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCcccccccccccceEEec--
Confidence 5567899999988887765 5788998742 11000 111121
Q ss_pred CCCCcccceeecCC-CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCeEEEEEec
Q 002164 186 PDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIP 263 (958)
Q Consensus 186 ~~~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~ 263 (958)
....+....|+|. +++|+... ....|.+||+.+++........... +..++|+| |+..|+...
T Consensus 531 -~~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~Sgs- 595 (793)
T PLN00181 531 -SRSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLASGS- 595 (793)
T ss_pred -ccCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEEEc-
Confidence 2235677899875 56666543 3568889998887654433333222 77899996 788877651
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCCcccccccc-C
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-S 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~-S 340 (958)
....|.++++ ++.. ..+.....+..+.| +
T Consensus 596 ------------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 596 ------------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred ------------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 1234666676 5532 23322245566777 5
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
++|+.|++.+. ++.|.+||+.... ...+..+ ...+..+.|+ |+..++..
T Consensus 628 ~~g~~latgs~-------------dg~I~iwD~~~~~~~~~~~~~h-------------~~~V~~v~f~-~~~~lvs~-- 678 (793)
T PLN00181 628 ESGRSLAFGSA-------------DHKVYYYDLRNPKLPLCTMIGH-------------SKTVSYVRFV-DSSTLVSS-- 678 (793)
T ss_pred CCCCEEEEEeC-------------CCeEEEEECCCCCccceEecCC-------------CCCEEEEEEe-CCCEEEEE--
Confidence 67998888763 3489999997532 1222211 1345677886 66655442
Q ss_pred eccCCCcccccccCCeEEEEeCCCC----CCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+..+.|.+|++... .......+..+...+..+.|+|+|++|+..+..+. ..+|.
T Consensus 679 -----------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~--v~iw~ 736 (793)
T PLN00181 679 -----------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE--VFVYH 736 (793)
T ss_pred -----------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE--EEEEE
Confidence 34557888886211 11223344444555667899999998887765443 44444
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=116.19 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=119.3
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCC-cccchhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGD-EEANDRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~-~~~~~~~~~~~~~D~~~a 746 (958)
..|.||++||.....+. |.. ....+.. .|+.|++ .|..|+|. +..+... .....+....
T Consensus 57 ~~~pvlllHGF~~~~~~-----------w~~----~~~~L~~~~~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~ 117 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFS-----------WRR----VVPLLSKAKGLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVEL 117 (326)
T ss_pred CCCcEEEeccccCCccc-----------Hhh----hccccccccceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHH
Confidence 36889999995322211 111 1112232 3799999 55666663 2222211 1223333344
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE---EeccCCCCCCC--------------------CC--
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI---ARSGAYNRTLT--------------------PF-- 801 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~~~~~~~~~--------------------~~-- 801 (958)
+..+...... +++.++|||+||++++.+|+.+|+.++.++ ...+.+...-. +.
T Consensus 118 i~~~~~~~~~--~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 195 (326)
T KOG1454|consen 118 IRRFVKEVFV--EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSL 195 (326)
T ss_pred HHHHHHhhcC--cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCcccc
Confidence 4333333222 469999999999999999999999999999 44443221000 00
Q ss_pred ----C-ccc-----------ccchhhhcH--------------HHH-------H--hcCcccccCCCC-CCEEEEeeCCC
Q 002164 802 ----G-FQN-----------EDRTLWEAT--------------STY-------V--EMSPFMSANKLK-KPILLVHGEED 841 (958)
Q Consensus 802 ----~-~~~-----------~~~~~~~~~--------------~~~-------~--~~sp~~~~~~~~-~P~Lii~G~~D 841 (958)
. +.. .....++.. +.+ . .......+.++. +|+||++|+.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D 275 (326)
T KOG1454|consen 196 TEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKD 275 (326)
T ss_pred ccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcC
Confidence 0 000 000000000 000 0 012233456666 99999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+| .+.+.++.+.+ -.+++.+++++||... .+..+.+...|..|+.++
T Consensus 276 ~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 276 QIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEEVAALLRSFIARL 324 (326)
T ss_pred CccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHHHHHHHHHHHHHh
Confidence 9999 77666665555 3579999999999875 477888999999999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=107.18 Aligned_cols=134 Identities=9% Similarity=0.032 Sum_probs=76.8
Q ss_pred ccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+.+++ ||++++++.. +++++.|+.+.....+................+.+...++++|||++++
T Consensus 198 rP~~~~~dg~~~~vs~e--------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTYT--------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred CCceEcCCCcEEEEecC--------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 445677 8877776652 4899999876544333221110000000001123445599999999998
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+...... .+ ......+.|+++|. .+++...-........++++||||+.++|..+... ..|.++|..++
T Consensus 264 V~~~~~~--~~-thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsViD~~t~ 332 (352)
T TIGR02658 264 LLADQRA--KW-THKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYIFDAETG 332 (352)
T ss_pred EEecCCc--cc-cccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEEEECcCC
Confidence 8432111 00 11134568999995 44333322233456778999999996667666543 45888998775
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-10 Score=104.04 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=132.8
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+.|-. .| .-...+|.|.+ ..|++|++|||+|..++..-. -..+.....+||+|+.
T Consensus 44 r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~c------------lsiv~~a~~~gY~vas 102 (270)
T KOG4627|consen 44 RVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMC------------LSIVGPAVRRGYRVAS 102 (270)
T ss_pred chhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhcc------------cchhhhhhhcCeEEEE
Confidence 455555543 22 33345676643 268999999998776542221 1234456789999998
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNR 796 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~ 796 (958)
+.| +.. ...+...+.+.++...++|+.+... +.+++.+.|||.|+.+++.+.++. .+++.+++..+|+|+.
T Consensus 103 vgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 103 VGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred ecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 444 222 1223467888999999999998632 456799999999999999988864 3589999999999873
Q ss_pred CC-CCCCcccccchhhhcHHHHHhcCc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 797 TL-TPFGFQNEDRTLWEATSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 797 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.. ....+ ...+.-..+.....|+ +.....++.|+||+.+++|.-- ++++.+.+...++++ .+..|++-+
T Consensus 175 ~EL~~te~---g~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espk--lieQnrdf~~q~~~a----~~~~f~n~~ 245 (270)
T KOG4627|consen 175 RELSNTES---GNDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPK--LIEQNRDFADQLRKA----SFTLFKNYD 245 (270)
T ss_pred HHHhCCcc---ccccCcccchhhhcCccHHHhcCceeeeeEeeecccCcH--HHHhhhhHHHHhhhc----ceeecCCcc
Confidence 21 10000 0000011111222233 1234567899999999999764 488999999988874 788899988
Q ss_pred ccC
Q 002164 875 HGY 877 (958)
Q Consensus 875 H~~ 877 (958)
|.-
T Consensus 246 hy~ 248 (270)
T KOG4627|consen 246 HYD 248 (270)
T ss_pred hhh
Confidence 963
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-09 Score=103.72 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=69.0
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-----CceEEEeccCCccccCcccccccccCcceeee
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-----~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
..+..++|||+.++++.++.+ +.+.+||.+ +..++.|...+.. . ......+-.++.
T Consensus 279 saV~~~aFsn~S~r~vtvSkD-------------G~wriwdtdVrY~~~qDpk~Lk~g~~p----l--~aag~~p~RL~l 339 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKD-------------GKWRIWDTDVRYEAGQDPKILKEGSAP----L--HAAGSEPVRLEL 339 (420)
T ss_pred hheeeeeeCCCcceeEEEecC-------------CcEEEeeccceEecCCCchHhhcCCcc----h--hhcCCCceEEEe
Confidence 667899999999999988844 478888876 3344444333211 0 011123457899
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeeecCCceEEEEE
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~ 474 (958)
||.|+.++.. ....|.++.. -+|+....+. -....+..++|++||++|+...
T Consensus 340 sP~g~~lA~s--------------~gs~l~~~~s--e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 340 SPSGDSLAVS--------------FGSDLKVFAS--EDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCCcEEEee--------------cCCceEEEEc--ccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 9999998873 3334555553 2343333332 2355678899999999998764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=123.92 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=80.7
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 356789999999999999864 33222222 48999886 2 3345664 23
Q ss_pred CcccceeecCCCCeEEEEEeecc---ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.....|+|||||++|+|+.+... ....++..+||++++++|+.++ ..+.. +..++|||||+.|++.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35899999999999999864311 1223356799999999988875 22322 7899999999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=110.57 Aligned_cols=239 Identities=12% Similarity=0.141 Sum_probs=151.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeec---cCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ---GFP 186 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt---~~~ 186 (958)
++....|+|+|+..+|++.+ . .-+|.||+.+ .+...+. +..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~r-------------------------r-------ky~ysyDle~----ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGR-------------------------R-------KYLYSYDLET----AKVTKLKPPYGVE 302 (514)
T ss_pred ccceeeecCCCceEEEeccc-------------------------c-------eEEEEeeccc----cccccccCCCCcc
Confidence 56778899999977666653 0 2478999865 3333333 222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.........||||+.||+... .+.|+++...+++.. +... +++.+..+.|+.||+.|+...
T Consensus 303 -~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli--~s~K---ieG~v~~~~fsSdsk~l~~~~---- 363 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELI--TSFK---IEGVVSDFTFSSDSKELLASG---- 363 (514)
T ss_pred -cchhheeEecCCCCeEEEccc---------CceEEeehhhhhhhh--heee---eccEEeeEEEecCCcEEEEEc----
Confidence 125666788999999999543 679999998888753 2222 223378999999998888661
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPD 342 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpD 342 (958)
+++++|++|+ .. -.++.... -.-++++.|++
T Consensus 364 ---------------------------------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 364 ---------------------------------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred ---------------------------------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 4568999999 44 33333333 33368899999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEecc----CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTD----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~----~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|+++|..++. +=+-|||.+ ++.++++.. ++.....+.++.|+||++.++...+
T Consensus 399 g~ylA~GS~~-------------GiVNIYd~~s~~~s~~PkPik~----------~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 399 GSYLATGSDS-------------GIVNIYDGNSCFASTNPKPIKT----------VDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred CceEEeccCc-------------ceEEEeccchhhccCCCCchhh----------hhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999988743 256677654 334444433 2233356789999999998887432
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
. ..+.+.++.+ |.-+ .-.-.. ..-+.+..++|||.|.++++....+ +..||.+
T Consensus 456 ~-----------~knalrLVHv-PS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g--rv~l~kL 511 (514)
T KOG2055|consen 456 V-----------KKNALRLVHV-PSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG--RVHLFKL 511 (514)
T ss_pred c-----------cccceEEEec-ccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCC--ceeeEee
Confidence 2 2345555554 1100 000011 1123355689999999999874333 2667765
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-08 Score=97.78 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=173.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++....|+|||..+|....+ ..|++|++-+| ......++++ .+
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~gd--ceN~~~lkgH--sg 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVYGD--CENFWVLKGH--SG 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEecccc--ccceeeeccc--cc
Confidence 46668899999998887765 58999998443 3556667664 35
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.+||.+|+-+.. ...|+.||+++|+..+-....... +..+.-+.-|-.++.+.
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sg------- 151 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSG------- 151 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEec-------
Confidence 7999999999999988653 679999999999876654444332 44444344455555541
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
. ...++-++|. ..+..++.+. ...+.+.|.-++..+.
T Consensus 152 --------------------------------s---------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 152 --------------------------------S---------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred --------------------------------C---------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 0 1245666676 5544444433 6778899998888876
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
... .+++|.+||+..+...-+... ...-+..+..||+|..+.-.
T Consensus 191 sgg-------------Idn~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGG-------------IDNDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred ecc-------------ccCceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 554 245899999975554433321 11345678899999987652
Q ss_pred ccccCCeEEEEeCCCCCCCCc-eEEEe-ecc----ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGP-EILHK-LDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~~-~~~----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
+....+.+||..|...++. ..+.. ... ..-..+|||+++.+-+.+.+. .+|++|..+. ...-....
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 4566788888756555444 33322 111 223479999999998776433 4788886662 22222233
Q ss_pred CCccccCCCCCCceEeccCCceEEEEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3333222 66888887776654
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-09 Score=115.07 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC-----Ccc----c-------
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE----A------- 731 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G-----~~~----~------- 731 (958)
+++|+||+.||-. + +...+...+..||++||+|++++.+|..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg-----------g----~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG-----------G----SRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC-----------c----chhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3499999999942 1 2223446678999999999998887754311 000 0
Q ss_pred ------------c------hhhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 002164 732 ------------N------DRFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 732 ------------~------~~~~~~~~~D~~~av~~l~~~--------------------~~~d~~~i~l~G~S~GG~~a 773 (958)
. .........|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 0 011223367888888888641 23567899999999999999
Q ss_pred HHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHH
Q 002164 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (958)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (958)
+.++.+. .+|+++|+..|-. +.- .+ .....++.|+|+|+.+. ..- ..+..+
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~--------~Pl------~~----------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM--------FPL------GD----------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-----------TTS-------G----------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc--------cCC------Cc----------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999988 6899999887621 100 00 00134678999998885 432 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCC------Cc------------cc----HHHHHHHHHHHHHHhhccC
Q 002164 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ES----IMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~------~~------------~~----~~~~~~~i~~fl~~~l~~~ 901 (958)
+.+ +...+....++.+.|..|.-. .+ .+ .....+.+++||++||...
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~~ 362 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGLH 362 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333 223445678889999999521 00 01 1334456899999998744
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=108.21 Aligned_cols=191 Identities=24% Similarity=0.270 Sum_probs=118.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (958)
.....|+++||+|+++|| .|.|..+.........+-|...|+..+... +.-...+++++|+|.||..+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 445678899999999665 455553333222334444555555444332 32234689999999999999888754
Q ss_pred --CCCc---eeEEEEeccCCCCCCC-------CC---------C----ccccc-----------chh-------------
Q 002164 780 --APHL---FCCGIARSGAYNRTLT-------PF---------G----FQNED-----------RTL------------- 810 (958)
Q Consensus 780 --~p~~---~~a~v~~~~~~~~~~~-------~~---------~----~~~~~-----------~~~------------- 810 (958)
.|++ +.++++.+++.|.... .+ + +.... ...
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 3554 6788887776552100 00 0 00000 000
Q ss_pred ----------------------hhcH---HHHHhcCc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-C
Q 002164 811 ----------------------WEAT---STYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (958)
Q Consensus 811 ----------------------~~~~---~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (958)
..++ ..+.+.+. ...-...+.|++|.||..|..|| +....++++.+...| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 0000 00111111 00011235799999999999999 999999999999999 7
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 864 ~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++++..+++.+|.... .......++||...+.+.+
T Consensus 252 ~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAA----FASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhh----hcCcHHHHHHHHHHHCCCC
Confidence 9999999999997532 1224567899999987654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-08 Score=95.65 Aligned_cols=251 Identities=10% Similarity=0.071 Sum_probs=154.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+.++.||+||..++..+.+ ..|.|++... | .+.+.+.. ...
T Consensus 16 ~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~~-g--~~~~ti~s--kky 57 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSLS-G--KQVKTINS--KKY 57 (311)
T ss_pred ceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcCC-C--ceeeEeec--ccc
Confidence 57789999999999986654 3688998743 3 33444432 112
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.-....+.+.++ .++..|..+++.+.+-.+...+.... +.++.-+|-++.+..++
T Consensus 58 G~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred cccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEecc-------
Confidence 5677778777777887653 34678999999998888887766654 77888999887777551
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....|.++|+ ..+-+-+-....-.-.+++|.|=.+|.
T Consensus 120 ------------------------------------------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 120 ------------------------------------------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred ------------------------------------------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 1123444454 332222211122234689999966666
Q ss_pred EeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
.... ..|.+||+.. +.+........ ........+.|||||+.|++.
T Consensus 158 ~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls---------- 205 (311)
T KOG1446|consen 158 ANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS---------- 205 (311)
T ss_pred ecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE----------
Confidence 5522 2788999872 22222111110 011234678999999999996
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccc---cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
...+.++++|+ .+|......+..... -....|+|||+.|+..++++. ..+|.+ +++ .....+..
T Consensus 206 ---T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~--i~vw~~--~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ---TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT--IHVWNL--ETG--KKVAVLRG 272 (311)
T ss_pred ---eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc--EEEEEc--CCC--cEeeEecC
Confidence 34556899996 666544444322221 245789999999887765443 455554 553 34444444
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=129.00 Aligned_cols=213 Identities=14% Similarity=0.103 Sum_probs=121.3
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|..++...+-++ ..|.||++||.+.... .| ......| +.||.|++ +|.+
T Consensus 8 ~~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~~-----------~w----~~~~~~L-~~~~~Vi~---~D~~ 60 (582)
T PRK05855 8 VSSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNHE-----------VW----DGVAPLL-ADRFRVVA---YDVR 60 (582)
T ss_pred EeeCCEEEEEEEcCCC--------CCCeEEEEcCCCchHH-----------HH----HHHHHHh-hcceEEEE---ecCC
Confidence 3458888887665321 1578999999642211 11 1233344 68999999 6666
Q ss_pred CCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCC-CC-
Q 002164 725 GEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR- 796 (958)
Q Consensus 725 G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-~~- 796 (958)
|+|.+.... .......+|+.++++.+. . ..++.|+||||||.+++.++.+. +.++..++..++.. +.
T Consensus 61 G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~ 135 (582)
T PRK05855 61 GAGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHV 135 (582)
T ss_pred CCCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHH
Confidence 888775422 124566777777777642 1 23599999999999988777652 23344333332211 00
Q ss_pred ------CC---CCCCc--------c----------c---------ccchhhh------------------------cHHH
Q 002164 797 ------TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATST 816 (958)
Q Consensus 797 ------~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~ 816 (958)
.. .+..+ . . .....+. ....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (582)
T PRK05855 136 GFWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKL 215 (582)
T ss_pred HHHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHH
Confidence 00 00000 0 0 0000000 0000
Q ss_pred HHh----cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002164 817 YVE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (958)
Q Consensus 817 ~~~----~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 892 (958)
+.. ........++++|+|+++|++|..+| +.....+.+.+. ..++++++ +||... .+....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~ 287 (582)
T PRK05855 216 YRANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAE 287 (582)
T ss_pred HHhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHH
Confidence 000 00001233478999999999999998 777776654433 24666666 589874 5666778888999
Q ss_pred HHHHh
Q 002164 893 WLQKY 897 (958)
Q Consensus 893 fl~~~ 897 (958)
|+.+.
T Consensus 288 fl~~~ 292 (582)
T PRK05855 288 FVDAV 292 (582)
T ss_pred HHHhc
Confidence 99874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=97.76 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=124.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|.+|++.. ++...-+. .........|||||+++++... ...|-.+|..+-+...-.....
T Consensus 87 k~ir~wd~r~----~k~~~~i~--~~~eni~i~wsp~g~~~~~~~k---------dD~it~id~r~~~~~~~~~~~~--- 148 (313)
T KOG1407|consen 87 KTIRIWDIRS----GKCTARIE--TKGENINITWSPDGEYIAVGNK---------DDRITFIDARTYKIVNEEQFKF--- 148 (313)
T ss_pred ceEEEEEecc----CcEEEEee--ccCcceEEEEcCCCCEEEEecC---------cccEEEEEecccceeehhcccc---
Confidence 3788999865 33332222 2235678899999999999653 4567777765543322211111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
.+..+.|.-++..++.+ ... +.-+|..+..=
T Consensus 149 --e~ne~~w~~~nd~Fflt-~Gl----------------------------------------------G~v~ILsypsL 179 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLT-NGL----------------------------------------------GCVEILSYPSL 179 (313)
T ss_pred --eeeeeeecCCCCEEEEe-cCC----------------------------------------------ceEEEEecccc
Confidence 15578899666655544 110 11122222211
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccC
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
..+..|..+ .+-..+.|+||||++|..+.+. -+.+||++.= -.|.++.+. ..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~GsADA-------------lvSLWD~~ELiC~R~isRld-------------wp 233 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------------LVSLWDVDELICERCISRLD-------------WP 233 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEeeccccc-------------eeeccChhHhhhheeecccc-------------Cc
Confidence 112223333 4556788999999999988553 6889998732 233344332 56
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++.++||.||+.|+-. ++...|=+..+ .+|.+..++ ..++....++|.|..-.|+|+..+..
T Consensus 234 VRTlSFS~dg~~lASa-------------SEDh~IDIA~v--etGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASA-------------SEDHFIDIAEV--ETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eEEEEeccCcceeecc-------------CccceEEeEec--ccCCeEEEe-eccCCceeEEecCCCceeeEEecCCC
Confidence 7899999999998872 33333334443 244444444 34555677999999999999986543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-07 Score=103.50 Aligned_cols=253 Identities=9% Similarity=0.080 Sum_probs=129.1
Q ss_pred eEEEEEc--C-CeeeecCC----CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEe---cc
Q 002164 315 QLVLVSL--D-GTVKEIGP----PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVREL---CD 383 (958)
Q Consensus 315 ~l~~~~~--~-g~~~~l~~----~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l---~~ 383 (958)
.|..+.+ + |..+.+.. +.....++++|||++|++..-. .+.+.+++++. +..... ..
T Consensus 63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~------------~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG------------GGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSEEEEEEEEEE
T ss_pred CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc------------CCeEEEEEccCCcccceeeeecc
Confidence 3444444 3 65554432 2344578899999999887632 35888888874 333332 11
Q ss_pred CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----cccC
Q 002164 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----LRYG 459 (958)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----~~~~ 459 (958)
+.... |............+.|+|||+.+++. + -+.+.|++++.+. .+++........ ..-+
T Consensus 131 ~~g~g--~~~~rq~~~h~H~v~~~pdg~~v~v~-d-----------lG~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 131 HEGSG--PNPDRQEGPHPHQVVFSPDGRFVYVP-D-----------LGADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp SEEEE--SSTTTTSSTCEEEEEE-TTSSEEEEE-E-----------TTTTEEEEEEE-T-TS-TEEEEEEEECSTTSSEE
T ss_pred cCCCC--CcccccccccceeEEECCCCCEEEEE-e-----------cCCCEEEEEEEeC-CCceEEEeeccccccCCCCc
Confidence 11110 00000111334678999999988763 1 2345787777521 222333321111 1234
Q ss_pred ceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEE
Q 002164 460 GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (958)
Q Consensus 460 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 539 (958)
.+.|+|||++++...+..+ ...++.++...+..+....................+.+||||++|+.....
T Consensus 196 h~~f~pdg~~~Yv~~e~s~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------- 265 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSN-TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------- 265 (345)
T ss_dssp EEEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------
T ss_pred EEEEcCCcCEEEEecCCCC-cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------
Confidence 5899999998777654432 244444443343111111111111111111111227789999988776532
Q ss_pred EccCCCCCCCCCCeEEEEEC--CCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002164 540 LNGNGATPEGNIPFLDLFDI--NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (958)
Q Consensus 540 ~~~~~~~~~~~~~~L~~~dl--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~ 617 (958)
...|.++++ ++|+.+.+..-... -.... ..++++||+.+++..+.... -.+|.+|..
T Consensus 266 -----------~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr-------~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~ 324 (345)
T PF10282_consen 266 -----------SNSISVFDLDPATGTLTLVQTVPTG--GKFPR-------HFAFSPDGRYLYVANQDSNT-VSVFDIDPD 324 (345)
T ss_dssp -----------TTEEEEEEECTTTTTEEEEEEEEES--SSSEE-------EEEE-TTSSEEEEEETTTTE-EEEEEEETT
T ss_pred -----------CCEEEEEEEecCCCceEEEEEEeCC--CCCcc-------EEEEeCCCCEEEEEecCCCe-EEEEEEeCC
Confidence 224666666 55666654321110 00011 25789999988887665443 457778888
Q ss_pred CCCeeEee
Q 002164 618 DKKSCQIT 625 (958)
Q Consensus 618 ~g~~~~Lt 625 (958)
+|..+.+.
T Consensus 325 tG~l~~~~ 332 (345)
T PF10282_consen 325 TGKLTPVG 332 (345)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEec
Confidence 88877665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=117.42 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=73.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....||||+.+++-++- ...|.+|+..+.+..+++...... +..+.|-|=|++|+..+
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASqs------ 190 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQS------ 190 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeeec------
Confidence 57899999999999988653 668889998888766666555543 77899999999999662
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-------ccccccccCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-------~~~~~~~~Sp 341 (958)
.+ +.-.+|...--|-.+.++.+ ..+..+.|||
T Consensus 191 ---------------dD--------------------------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 191 ---------------DD--------------------------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred ---------------CC--------------------------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 11 12224443224555555543 3467899999
Q ss_pred CCcEEEEEee
Q 002164 342 DEKYILISSI 351 (958)
Q Consensus 342 DGk~l~~~~~ 351 (958)
||++|+....
T Consensus 230 DG~~las~nA 239 (942)
T KOG0973|consen 230 DGHHLASPNA 239 (942)
T ss_pred CcCeecchhh
Confidence 9999987653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-08 Score=105.49 Aligned_cols=307 Identities=15% Similarity=0.072 Sum_probs=147.9
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.+.|||||+++.....+ +.|.++|+.+ + ...+++ ..+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~-~--~~v~~i---~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT-G--KVVATI---KVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS-S--SEEEEE---E-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc-c--cEEEEE---ecCCCcc
Confidence 35789999997776543 3678888854 1 223333 3455678
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc---ccccccceEEecCCeEEEEEecCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~---~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
..++||||++|+.... ...++.++|.++.+..+........ ....+..+.-+|+...+++...
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk------ 147 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK------ 147 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc------
Confidence 8999999999876543 2568999999887765543221100 0001234445666664444310
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCCccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDGk~ 345 (958)
...++|++|. +.+ .+.+..+.......|+|||++
T Consensus 148 ------------------------------------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 148 ------------------------------------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ------------------------------------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ------------------------------------------cCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 2467999997 442 223322234457789999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++...+.. +.+-++|.+++....+.... ....|....+...-..++.|.-.+........-
T Consensus 186 ~~va~~~s------------n~i~viD~~~~k~v~~i~~g-~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i------ 246 (369)
T PF02239_consen 186 FLVAANGS------------NKIAVIDTKTGKLVALIDTG-KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI------ 246 (369)
T ss_dssp EEEEEGGG------------TEEEEEETTTTEEEEEEE-S-SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE------
T ss_pred eeeccccc------------ceeEEEeeccceEEEEeecc-ccccccccccccCCCcceEEeeccccceecccc------
Confidence 98876542 37888998876655443221 100010000000111234454433322221110
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
..+.+.+++. .+-+..+++...... ..+.-+||+++|+.....+.....|.++|..+. +...........
T Consensus 247 -----g~~~v~v~d~--~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~~ 316 (369)
T PF02239_consen 247 -----GTDPVSVHDD--YAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPGK 316 (369)
T ss_dssp -----E--TTT-STT--TBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT-
T ss_pred -----cCCccccchh--hcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCCC
Confidence 0111112221 112223334322222 456779999999887322222357999998774 211111111110
Q ss_pred ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
..-++.|++||+++++...+. ...|.++|.++.+...-
T Consensus 317 -----~~~h~ef~~dG~~v~vS~~~~-------------------~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 317 -----RVVHMEFNPDGKEVWVSVWDG-------------------NGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE---------------------TTEEEEEETTTTEEEEE
T ss_pred -----cEeccEECCCCCEEEEEEecC-------------------CCEEEEEECCCcEEEEE
Confidence 011278999999988876321 11699999988765443
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-07 Score=95.08 Aligned_cols=287 Identities=14% Similarity=0.111 Sum_probs=144.1
Q ss_pred ceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec-CCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP-LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 219 ~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
+.|+++|.++++.......... ... ..||||+.|+.+.. -.++.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~----------------------------- 71 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIA----------------------------- 71 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEeccccccc-----------------------------
Confidence 7899999998876544433332 123 48999999998721 00110
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCce
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ 367 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~ 367 (958)
..+ ....|-++|. +++. ..|.-+ .....+++|||||+|++.... + ...
T Consensus 72 --~G~---------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p----------~~~ 129 (352)
T TIGR02658 72 --RGK---------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-P----------SPA 129 (352)
T ss_pred --cCC---------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-C----------CCE
Confidence 000 2245778887 6643 334322 122478999999999877522 1 247
Q ss_pred eEEEeccCceEEE-eccCCcc-ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 368 VGVWTTDGIFVRE-LCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 368 i~l~d~~~~~~~~-l~~~~~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
+.++|+.+++... +.. +.. ...+. ..........||+.+.+..+. .+....-
T Consensus 130 V~VvD~~~~kvv~ei~v-p~~~~vy~t------~e~~~~~~~~Dg~~~~v~~d~------------~g~~~~~------- 183 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDV-PDCYHIFPT------ANDTFFMHCRDGSLAKVGYGT------------KGNPKIK------- 183 (352)
T ss_pred EEEEECCCCcEEEEEeC-CCCcEEEEe------cCCccEEEeecCceEEEEecC------------CCceEEe-------
Confidence 8899998665433 322 110 00000 011122333444443332110 1111100
Q ss_pred CCceEEEee--ccccCceeeec-CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc----CCccccCCCC-CCceEe
Q 002164 446 EGPEILHKL--DLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR----SSEDVYSDPG-SPMMRR 517 (958)
Q Consensus 446 ~~~~~l~~~--~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~ 517 (958)
...+... +.-...+.|++ ||++++.+ .. ..|+.+|+.+........+.. .....+...+ .+ +++
T Consensus 184 --~~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~ 255 (352)
T TIGR02658 184 --PTEVFHPEDEYLINHPAYSNKSGRLVWPT-YT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAY 255 (352)
T ss_pred --eeeeecCCccccccCCceEcCCCcEEEEe-cC----CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEE
Confidence 0011111 11123456677 77655544 33 359999976642222111111 0000111111 22 678
Q ss_pred ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCE
Q 002164 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLK 597 (958)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 597 (958)
+|||++++...... ...+......+|+++|+++++...-.....+ .. ..++|+||+.
T Consensus 256 ~~dg~~lyV~~~~~-----------~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-----~~-------~iavS~Dgkp 312 (352)
T TIGR02658 256 HRARDRIYLLADQR-----------AKWTHKTASRFLFVVDAKTGKRLRKIELGHE-----ID-------SINVSQDAKP 312 (352)
T ss_pred cCCCCEEEEEecCC-----------ccccccCCCCEEEEEECCCCeEEEEEeCCCc-----ee-------eEEECCCCCe
Confidence 88888877644211 0000111224799999999887765543322 12 2468999994
Q ss_pred EEEEEecCCCCceEEEEECCCCCe
Q 002164 598 ILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 598 l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
+++..... ...+.++|..+++.
T Consensus 313 ~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 313 LLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred EEEEeCCC--CCcEEEEECcCCeE
Confidence 44444432 24588999888753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=95.01 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=170.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..++++|+-+++|....+ .-.++|++.+ | ...-+++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD---------------------------------D~AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD---------------------------------DLAFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC---------------------------------ceEEEEEccC-C--cceeEecCCC--C
Confidence 56678888877776655443 3458999854 3 2456677643 5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....||-||.+||. ++=...|.++...+|..+.....+... +..+.|.|-+.+|++..
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG~------- 167 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAGS------- 167 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEeec-------
Confidence 7999999999999998 334567777777777665444323222 67889999998888761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....+|.+.+ ++.. +.+..+ ...+.-.|.||||+|
T Consensus 168 ------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 168 ------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ------------------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 2355888888 6444 444433 667778899999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCc--------eEEE
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST--------LYWA 417 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l--------~~~~ 417 (958)
+....+ +.|.+|++.++.+ ..++.....+..+..++. .+...+.=+.+|... +...
T Consensus 206 ~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~--~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 206 LTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNL--AGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred EEEecC-------------ceEEEEecCCCceeEEecccccCcCCcccccc--ccceeEeccCCccEEEEccccceEEEe
Confidence 988743 4899999986543 334422211111111110 000111111122111 1110
Q ss_pred Ee---------ccCCCccc-------------ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 418 ET---------QDGGDAKV-------------EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 418 ~~---------~~~~~~~~-------------~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.. .+.....+ -.+-.+.|.+||. ...+.|.+-.+...+..+.|-+ ..+|+...-
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeecc
Confidence 00 00000000 1123457888885 5556666656666678889988 556655442
Q ss_pred ccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+ ..|+.+|..+| ..+.....+...++. ++.+||++.++..+
T Consensus 347 -~---g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 347 -N---GKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred -C---ceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 2 35777887775 444455555555554 78899998877665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-09 Score=103.85 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=82.9
Q ss_pred hcceEEEEEc-CCeeeecCC--CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccc
Q 002164 312 ATTQLVLVSL-DGTVKEIGP--PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~--~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~ 388 (958)
+...||.++. +.....+.- .+.+.+++|||+|+.+++.... .+..+.+||+++.....+..
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~----- 100 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGT----- 100 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecC-----
Confidence 5677999988 555555533 2568999999999999887632 23489999998655544432
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCC
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDS 467 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg 467 (958)
.....+.|||+|+.+++..-. ...+.|.+||. . +.+.+.. .......+.|||||
T Consensus 101 ----------~~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 101 ----------QPRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred ----------CCceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcCCC
Confidence 123468999999999884110 22456889996 3 3344422 22345678999999
Q ss_pred ceEEEEE
Q 002164 468 LALVYES 474 (958)
Q Consensus 468 ~~l~~~~ 474 (958)
++|+.+.
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999875
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=108.54 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=76.8
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHH
Q 002164 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 702 ~~~~~~la~~G~~vl~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
...+..+...||.++.+.... +.|+|.+ .....++|+.++|+||+... .-..++|+|+|||-|..-++.++.
T Consensus 53 ~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~ 127 (303)
T PF08538_consen 53 PDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLS 127 (303)
T ss_dssp HHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHh
Confidence 345555656899999865544 4566654 45788999999999999973 235679999999999999999998
Q ss_pred hCC-----CceeEEEEeccCCCCCCCCCCccc-c-c-------------------------chhh-hcH-----------
Q 002164 779 HAP-----HLFCCGIARSGAYNRTLTPFGFQN-E-D-------------------------RTLW-EAT----------- 814 (958)
Q Consensus 779 ~~p-----~~~~a~v~~~~~~~~~~~~~~~~~-~-~-------------------------~~~~-~~~----------- 814 (958)
+.. ..+.++|+.+|+.|.+........ . . ...+ +.|
T Consensus 128 ~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s 207 (303)
T PF08538_consen 128 SPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLAS 207 (303)
T ss_dssp H-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-
T ss_pred ccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccC
Confidence 652 579999999999997654432211 0 0 0000 111
Q ss_pred ----HHHHhc-----CcccccCCCCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCc----EEEEEeCCCCccCCCc
Q 002164 815 ----STYVEM-----SPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGAL----CRLVILPFESHGYAAR 880 (958)
Q Consensus 815 ----~~~~~~-----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~----~~~~~~p~~~H~~~~~ 880 (958)
+.|... .......++++|+|++.+++|..|| ... -.++.++++..-.+ ..-.++||++|.+...
T Consensus 208 ~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~ 285 (303)
T PF08538_consen 208 PGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGP 285 (303)
T ss_dssp SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------------------------------
T ss_pred CCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--cccccccccccccccccccccccccccccccccccccc
Confidence 000000 0012456778899999999999998 443 34566666654322 2245899999999754
Q ss_pred cc---HHHHHHHHHHHH
Q 002164 881 ES---IMHVLWETDRWL 894 (958)
Q Consensus 881 ~~---~~~~~~~i~~fl 894 (958)
.. .+.+.+++..||
T Consensus 286 ~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 286 SQAEAREWLVERVVKFL 302 (303)
T ss_dssp -----------------
T ss_pred ccccccccccccccccC
Confidence 43 235566666665
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-08 Score=108.71 Aligned_cols=269 Identities=16% Similarity=0.066 Sum_probs=153.1
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
....+||||++|||..+.. +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc-
Confidence 3578999999999988654 677889999999998653211 01110 2249999999999998433211100
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee--eecCCC---cc-ccccccCCCCc
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDEK 344 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~l~~~---~~-~~~~~~SpDGk 344 (958)
.. ....+||+..+ ++.. +.|... .. ...+..|+||+
T Consensus 197 ------------------------------~~-------~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 ------------------------------DS-------GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ------------------------------CC-------GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred ------------------------------cC-------CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 00 02356888888 6533 355543 22 45778999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCc-----eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
+|++.+..... ..++++.+++.+ ..+.|..... +.. ......|..+++.++.
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~-~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVE-YYVDHHGDRLYILTND 296 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-E-EEEEEETTEEEEEE-T
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceE-EEEEccCCEEEEeeCC
Confidence 99988765421 248999998864 4455443110 111 1122226666665552
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCC---ce-EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC-CCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVA 494 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-~~~~~ 494 (958)
. ..+..|+.+++ +... .. .+........--.++..+.+|++....+. ..+|+++++. +. .
T Consensus 297 ~---------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 297 D---------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLDDGK--E 361 (414)
T ss_dssp T----------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT-TE--E
T ss_pred C---------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEECCCCc--E
Confidence 1 34567888886 3222 22 34444333333345566778887766665 3789999998 42 2
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
...+.......+.+ ++..+++..+.|..... -..+.+|.+|+++++.+.+.
T Consensus 362 ~~~~~~p~~g~v~~------~~~~~~~~~~~~~~ss~-----------------~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 362 SREIPLPEAGSVSG------VSGDFDSDELRFSYSSF-----------------TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEESSSSSEEEE------EES-TT-SEEEEEEEET-----------------TEEEEEEEEETTTTCEEEEE
T ss_pred EeeecCCcceEEec------cCCCCCCCEEEEEEeCC-----------------CCCCEEEEEECCCCCEEEEE
Confidence 22222222221111 33456666666665321 12357999999999988765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-09 Score=113.52 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+.++++|+|+++|+.|..+| +..++++.+.++..+..++++++++ .||... .+....+.+.+.+||.+
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999999 8999999998887666789999985 899863 45667778888888764
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=101.66 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=110.4
Q ss_pred CcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 712 GFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
-+.|++ -|-+|||.+..++.- .+-..+|...|++.+... +-+++-|+|+|-||..|+.+|+++++.+...|.
T Consensus 71 ~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 71 QVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred ceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 488888 555688888655332 334578889999988876 446999999999999999999999988777666
Q ss_pred eccCCCCCC-CCCC---------cccccc-------------hhhhcH----HHHHhcCc----ccccCCCCCCEEEEee
Q 002164 790 RSGAYNRTL-TPFG---------FQNEDR-------------TLWEAT----STYVEMSP----FMSANKLKKPILLVHG 838 (958)
Q Consensus 790 ~~~~~~~~~-~~~~---------~~~~~~-------------~~~~~~----~~~~~~sp----~~~~~~~~~P~Lii~G 838 (958)
.++...... ..+. +....+ ..|..- ..+...-- -..+.++++|+||+||
T Consensus 145 wga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG 224 (277)
T KOG2984|consen 145 WGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHG 224 (277)
T ss_pred ecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeC
Confidence 554321100 0000 001111 112110 11111000 1235688999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+.|+.++ -.+.- +...++. -.++.++|.++|.+. .....++...+.+||++
T Consensus 225 ~kDp~~~--~~hv~-fi~~~~~---~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 225 GKDPFCG--DPHVC-FIPVLKS---LAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CcCCCCC--CCCcc-chhhhcc---cceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 9999997 44443 3333333 258889999999985 44556777788888865
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=131.94 Aligned_cols=199 Identities=15% Similarity=0.207 Sum_probs=119.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----------hhHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (958)
.|.||++||..... ..| ......| ..+|.|+. .+.+|+|.+.... ......
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 57899999964221 111 1223333 45699999 5566777764321 112233
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC------------------CC
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------------------PF 801 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~------------------~~ 801 (958)
.+++.+.++ + .+.+++.|+||||||.+++.++.++|++++++|++++....... ..
T Consensus 1432 a~~l~~ll~----~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIE----H--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHH----H--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 333333333 2 23468999999999999999999999999999988753211100 00
Q ss_pred Cccc-----ccchhhh-------------------cHH----HHHhc------CcccccCCCCCCEEEEeeCCCCCCCCC
Q 002164 802 GFQN-----EDRTLWE-------------------ATS----TYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (958)
Q Consensus 802 ~~~~-----~~~~~~~-------------------~~~----~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (958)
+... .....|. +.. .+... +....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 0000 0000000 000 00000 0112366788999999999998753
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+.++.+.+.... ..++++++|++||... .++...+.+.+.+||.+.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 56677777665420 1268999999999874 567778888999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=113.19 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=98.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..+.|+|-|-++|..+. ++.-.+|..+...+.++...... .++-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~-------------D~tArLWs~d~~~PlRifaghls------------DV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASH-------------DQTARLWSTDHNKPLRIFAGHLS------------DVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCC-------------CceeeeeecccCCchhhhccccc------------ccceEEECCccc
Confidence 56778889999976665542 34677888876555444433322 234588999998
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+++- .+.+..+.+||+ ..|..++..+.+...+..++|||+|++|+.....+. ..|| |+.++
T Consensus 549 Y~aT-------------GSsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~--I~iW--Dl~~~ 609 (707)
T KOG0263|consen 549 YVAT-------------GSSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL--IKIW--DLANG 609 (707)
T ss_pred cccc-------------CCCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc--EEEE--EcCCC
Confidence 7764 134556888997 566666666788888999999999999998765443 4455 55553
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.....-.....+++ ++||.||..|+...
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGG 638 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecC
Confidence 233333333555666 89999999888775
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-07 Score=94.20 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=164.0
Q ss_pred ChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc
Q 002164 99 PPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (958)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~ 178 (958)
|.++.--++.+......||+-|.+||....+ +.+.|||+.+ .+.
T Consensus 14 PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T---~~i 57 (405)
T KOG1273|consen 14 PEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDT---FRI 57 (405)
T ss_pred hHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEccc---cch
Confidence 4555566677777789999999999998875 5789999855 234
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.++.+. ..+....||+||+.|+..++ ...+-+||+-.|.+.+-...+.. +....|.|-.+..
T Consensus 58 ar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~sp-----v~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 58 ARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDSP-----VWGAQWHPRKRNK 121 (405)
T ss_pred hhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccCc-----cceeeeccccCCe
Confidence 55665533 46899999999999998664 56788889887765433222322 5677788755333
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--cc-c
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AV-Y 334 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~-~ 334 (958)
+++..- ...-+++++ ++..+.|... +. .
T Consensus 122 ~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 122 CVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred EEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCccccc
Confidence 333110 011234455 4544444432 11 1
Q ss_pred cc---cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 335 TS---LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 335 ~~---~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.. ..|.+-|++|+..... +.+.+++..+-+...-..... ...+..+.++-.|+
T Consensus 154 ~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKGR 209 (405)
T ss_pred cccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccCc
Confidence 12 2488889999876533 378888877644321111000 03456788999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCC----CCCCceEEEeec-----cccCceeeecCCceEEEEEeccccceE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLD-----LRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+++. .....|..++...+ .++.+....+.. ..-....||-||.+|+.++. ....
T Consensus 210 ~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~---~aHa 273 (405)
T KOG1273|consen 210 FLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA---RAHA 273 (405)
T ss_pred EEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc---ccee
Confidence 88873 22334555554211 112222111111 11134789999999887762 3367
Q ss_pred EEEEcCCCCCCCcEEEeccCC-ccccCCCCCCceEeccCCceEEEE
Q 002164 483 TWVISPGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
||++....| ....+..+.. +.... +.|.|---.|+..
T Consensus 274 LYIWE~~~G--sLVKILhG~kgE~l~D------V~whp~rp~i~si 311 (405)
T KOG1273|consen 274 LYIWEKSIG--SLVKILHGTKGEELLD------VNWHPVRPIIASI 311 (405)
T ss_pred EEEEecCCc--ceeeeecCCchhheee------cccccceeeeeec
Confidence 998887765 3444443333 22222 4566655444443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-09 Score=105.36 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
...|||+|++||... ..+|.+.|.++-+..+|...-.. +..+.|+.|.-.|.+...
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~y--------- 68 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAY--------- 68 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeee---------
Confidence 568999999999976 45889999888776666433221 567889999998887721
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEEEEE
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
....+.++++ .-+ .-.|..+ .+.....||||||+|+.+
T Consensus 69 ---------------------------------------k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 69 ---------------------------------------KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred ---------------------------------------ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 1223455555 322 2345555 778899999999999988
Q ss_pred eecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 429 (958)
+ ++.-+|.+|.+.++....+.... .+...++|.|||+..++...+ |-.+..
T Consensus 110 s------------eF~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~sRr-DCkdyv--- 160 (447)
T KOG4497|consen 110 S------------EFDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILSRR-DCKDYV--- 160 (447)
T ss_pred e------------cceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeeecc-cHHHHH---
Confidence 7 34568999999877655443211 345689999999987775332 221110
Q ss_pred ccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCC
Q 002164 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (958)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (958)
+|..-. +=.-.+.......+..++.|||||..|+.-.+--. ..+|.+.-..| ..+
T Consensus 161 ----~i~~c~----~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 161 ----QISSCK----AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ----HHHhhH----HHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccc-----eeE----------
Confidence 011000 00000000111223467899999999987543222 33444332221 011
Q ss_pred CCCCceEeccCCceEEEEee
Q 002164 510 PGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~~ 529 (958)
+.|||.++.|+.+..
T Consensus 216 -----v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSY 230 (447)
T ss_pred -----EEeccccceEEeecc
Confidence 567887777777664
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-08 Score=112.33 Aligned_cols=178 Identities=15% Similarity=0.225 Sum_probs=113.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..|+.||||+++||+....+ ...+...+||+++. +++.++++.... ...+.|+|||+.|+|......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~--- 419 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNT--- 419 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcc---
Confidence 6789999999999999986553 22346779999997 556688876543 568999999999998832100
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
...+ ... ....+||++++ .|+.++ ...+.+.++.|||||++|+|
T Consensus 420 -------------------~~~v-------~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 420 -------------------VVRV-------IRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred -------------------eEEE-------ecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 0000 000 03468999998 666655 22267899999999999999
Q ss_pred EeecCCccccccCCCCCceeEE---EeccCceEEEeccCC-ccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l---~d~~~~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
... +++++ ...++++ +.|+... ... .......++.|..|++ |+...+
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~~~------ 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVGRS------ 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEEec------
Confidence 982 26776 4444554 4443210 000 0001135688999998 444311
Q ss_pred cccccccCCeEEEEeCCCCCCCCceE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
+....+|.+.+ +|...+.
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12335788875 6655544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=104.88 Aligned_cols=221 Identities=9% Similarity=0.027 Sum_probs=137.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|+||++-.++ .-.|...++ ...+....||++|..++-++- ...|-+||+++|+...-......
T Consensus 237 ~~vklW~vy~~~--~~lrtf~gH--~k~Vrd~~~s~~g~~fLS~sf---------D~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 237 GLVKLWNVYDDR--RCLRTFKGH--RKPVRDASFNNCGTSFLSASF---------DRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred ceEEEEEEecCc--ceehhhhcc--hhhhhhhhccccCCeeeeeec---------ceeeeeeccccceEEEEEecCCC--
Confidence 578999996655 334444443 347899999999999888653 66888999999987544332221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
..-+.+.||+..++++.. ....|..+|.
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 446778899966665500 2345777887
Q ss_pred CCeeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 ~g~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+|+..+-.. . +.+..+.|-++|++++.++++ +.+.+|+........+...+.. .
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd-------------ks~riWe~~~~v~ik~i~~~~~-----------h 386 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDD-------------KSVRIWENRIPVPIKNIADPEM-----------H 386 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccC-------------ccEEEEEcCCCccchhhcchhh-----------c
Confidence 776544333 3 678889999999999988854 3788888774332222111111 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-E--EeeccccCceeeecCCceEEEEEec
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L--HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l--~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
....+..+|+|+.++.- +..+.++++.+.+.---..+. . ....+..-.+.|||||++|++....
T Consensus 387 smP~~~~~P~~~~~~aQ-------------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQ-------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhh-------------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 23457788998876652 445566666541111001111 1 1123333458999999999887433
Q ss_pred cccceEEEEEcCCC
Q 002164 477 KTRRTRTWVISPGS 490 (958)
Q Consensus 477 ~~~~~~l~~~~~~~ 490 (958)
..+|.+|..+
T Consensus 454 ----G~v~~wdwkt 463 (503)
T KOG0282|consen 454 ----GKVNFWDWKT 463 (503)
T ss_pred ----ccEEEeechh
Confidence 3577777665
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-07 Score=89.26 Aligned_cols=249 Identities=12% Similarity=0.099 Sum_probs=157.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
+.+....|+|||..+|. +.....|++|++.+...- .+....+ .+..+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEec----
Confidence 57899999999998887 344778999997764332 2222222 277899999999999772
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG 343 (958)
....++.+|. +|+.. +.... .-+.....+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 2245778888 77543 33333 444555555566
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
-.++-+..+ ++++.+||+..++..++.... ....++.|..++..+..-
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 666666533 459999999866543322111 123567788777766541
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+-++.|-+||+ ..+.-...+..+...+..+.-||+|..|...+-+.. .++|.+.+--.......++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--vrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT--VRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccce--EEEEEecccCCCCceEEEeecch
Confidence 34556777874 444444555666667788999999999887665554 66777665544222244554433
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
...-- .-...+|||+++.+.+...+ ..+|+||..+....
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~d---------------------r~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSAD---------------------RFVYVWDTTSRRIL 301 (338)
T ss_pred hhhhh--hcceeeccCCCCcccccccc---------------------ceEEEeecccccEE
Confidence 22110 11226899999998887632 26999998664443
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=106.59 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=102.5
Q ss_pred HcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---------CCCCCcccccchhhhcH--HHHH
Q 002164 752 RRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEAT--STYV 818 (958)
Q Consensus 752 ~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~ 818 (958)
+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+.+|+.+.. ...|+-..... +|... ..+.
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~w~ 221 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPAWQ 221 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCcccccc
Confidence 3334454 389999999999999999999999999999999998755 22222211111 22111 2345
Q ss_pred hcCcccccCC--------------CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH
Q 002164 819 EMSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884 (958)
Q Consensus 819 ~~sp~~~~~~--------------~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 884 (958)
+++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+...++..|.+. ...
T Consensus 222 ~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~---~w~ 298 (316)
T COG0627 222 ENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWY---FWA 298 (316)
T ss_pred ccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHH---HHH
Confidence 5566555543 44678888999998752013347889999999999999999988899863 345
Q ss_pred HHHHHHHHHHHHhhcc
Q 002164 885 HVLWETDRWLQKYCVS 900 (958)
Q Consensus 885 ~~~~~i~~fl~~~l~~ 900 (958)
..+..++.|+...|..
T Consensus 299 ~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 299 SQLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6678888888887753
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=100.26 Aligned_cols=256 Identities=13% Similarity=0.125 Sum_probs=142.3
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~ws 252 (958)
.+.++...+ ..+...++-|.|-+++. +.-...|..||..|-.. ++|-..... .+.+++||
T Consensus 159 hEi~l~hgt--k~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys 223 (641)
T KOG0772|consen 159 HEIQLKHGT--KIVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYS 223 (641)
T ss_pred ceEeccCCc--eEEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeec
Confidence 344554322 37888899999999887 44577888999887543 334332322 27799999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecC
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIG 329 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~ 329 (958)
+.|..|++++..... ++.+.+|..+.. ...+.-|+.|+ .|-.
T Consensus 224 ~Tg~~iLvvsg~aqa------------kl~DRdG~~~~e-------------------~~KGDQYI~Dm~nTKGHi---- 268 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQA------------KLLDRDGFEIVE-------------------FSKGDQYIRDMYNTKGHI---- 268 (641)
T ss_pred CCCCeEEEEecCcce------------eEEccCCceeee-------------------eeccchhhhhhhccCCce----
Confidence 999888776221111 111111111100 01222344444 1222
Q ss_pred CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceE-EEeccCCccccCcccccccccCcceeeee
Q 002164 330 PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 330 ~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
..++..+|.|+.|..+.+... ++.+.+|+++. +.. +.+...+.. +....+..-+|+
T Consensus 269 --a~lt~g~whP~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~--------g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 269 --AELTCGCWHPDNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG--------GKRVPVTSCAWN 326 (641)
T ss_pred --eeeeccccccCcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC--------CcccCceeeecC
Confidence 345677999999988887743 45899999983 322 222221111 112334678999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE----EeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
|||+.|+-- -..+.|-+|+. ..-+..+.-. ......+..+.||+||++|+.-..++. .++
T Consensus 327 rdg~~iAag-------------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKv 390 (641)
T KOG0772|consen 327 RDGKLIAAG-------------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKV 390 (641)
T ss_pred CCcchhhhc-------------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eee
Confidence 999997752 23445666763 0011111111 122336788999999999988766665 566
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.+.--. ++..+...-....... -..||||.+.|+.+.
T Consensus 391 WDLrq~k---kpL~~~tgL~t~~~~t----dc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 391 WDLRQFK---KPLNVRTGLPTPFPGT----DCCFSPDDKLILTGT 428 (641)
T ss_pred eeccccc---cchhhhcCCCccCCCC----ccccCCCceEEEecc
Confidence 6554222 2232222111111111 167999998777664
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=96.32 Aligned_cols=272 Identities=12% Similarity=0.141 Sum_probs=156.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+....||.||.+||..-.. +.|.||.+.+ | .....+- ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46788999999999876543 4788998865 2 2333442 1334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.|-+..|++ +.....||.|.+..+...++..+++.. ...-.+.||||+|+....+.....
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 7888999998877777 345779999999885555666555433 456678999999997743221110
Q ss_pred -CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----------cccccc
Q 002164 270 -PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYTSL 337 (958)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----------~~~~~~ 337 (958)
..+...|.- ++.+.++...-- +-.+......+.-....+.+.++. +|++.....+ ....++
T Consensus 217 Wn~ktg~p~~-~~~~~e~~~~~~------~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 217 WNPKTGQPLH-KITQAEGLELPC------ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EecCCCceeE-EecccccCcCCc------cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 000000000 000000000000 000000000111113345556665 6665544431 112233
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
.+.|-...|-..+ ++...++|-|||+....+|.+..++ .++..+.|-+ ..+|+-.
T Consensus 290 e~~~~ss~lpL~A----------~G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~l~t~- 344 (399)
T KOG0296|consen 290 ESIPSSSKLPLAA----------CGSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDYLLTA- 344 (399)
T ss_pred hhcccccccchhh----------cccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cchheee-
Confidence 3333222111111 3345679999999998888887765 4566788887 4444331
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
...+.|+.||+ ..|......+.+...+..++.+||++.++..+.++.
T Consensus 345 ------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 345 ------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 44678999996 566555666777888888999999998888765554
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-08 Score=108.88 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=62.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH----HHHH
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA----NLLA 778 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~----~~a~ 778 (958)
.+...|+++||.|++++ .+|.|.+.....+......++.++++++++. .+.+++.++|||+||.++. .+++
T Consensus 211 Slv~~L~~qGf~V~~iD---wrgpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVIS---WRNPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEE---CCCCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 46778999999999944 4555655333333344556688888888875 3456899999999999852 2344
Q ss_pred hC-CCceeEEEEeccCCC
Q 002164 779 HA-PHLFCCGIARSGAYN 795 (958)
Q Consensus 779 ~~-p~~~~a~v~~~~~~~ 795 (958)
.. +++++.++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 44 678999998887655
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=92.10 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=154.3
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccC--CCCccccccccceEEecCCeEEEEEe
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQ--SPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~--~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
++..+....||.||++||.... ...|.+|+++.=+ +.+-.. .+.+ ....++|+||-+.+++..
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~---------Dr~Ir~w~~~DF~~~eHr~~R~nve~d----hpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISG---------DRSIRLWDVRDFENKEHRCIRQNVEYD----HPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeC---------CceEEEEecchhhhhhhhHhhccccCC----CceEEEECCCcceEEEEE
Confidence 3457899999999999999773 5567777766522 111110 0111 134788999999888773
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc----CCee----eecCC----
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV----KEIGP---- 330 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~----~g~~----~~l~~---- 330 (958)
.. .+.|++|-+ +|.. ..+..
T Consensus 152 ~~------------------------------------------------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~ 183 (420)
T KOG2096|consen 152 KR------------------------------------------------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFE 183 (420)
T ss_pred cc------------------------------------------------CCEEEEEEeeecccCCCCcccccccccccc
Confidence 21 122333332 1210 00000
Q ss_pred --C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee
Q 002164 331 --P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 331 --~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
. ..+.++-..-.+++|+..+.+ .+|-+|++.|.....+...... ....+.|
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavS 237 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVS 237 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeC
Confidence 0 122334445566777666533 4899999998776666543322 2467899
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeC-CCCCCC--C---ceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA-EPVQGE--G---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~g~--~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
|||+.|+... ....+.+|.+ ...+|. + .-+|..+...+...+||+++++++..+.++. .
T Consensus 238 P~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~--w 302 (420)
T KOG2096|consen 238 PDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK--W 302 (420)
T ss_pred CCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc--E
Confidence 9999988741 1112233321 001221 1 2233455666778999999999988776554 7
Q ss_pred EEEEEcCCCCCC-CcEEEecc--CCccccCCCCCC-ceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEE
Q 002164 482 RTWVISPGSKDV-APRILFDR--SSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (958)
Q Consensus 482 ~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (958)
+||..|..-..+ .+..+-.. +....- ++| .+..||.|+.|+.... ..|.++
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag---~~p~RL~lsP~g~~lA~s~g----------------------s~l~~~ 357 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAG---SEPVRLELSPSGDSLAVSFG----------------------SDLKVF 357 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcC---CCceEEEeCCCCcEEEeecC----------------------CceEEE
Confidence 898877644211 12222111 111111 222 2678999998877652 137778
Q ss_pred ECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEe
Q 002164 558 DINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 558 dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
..++|+...-...- .+++. ...+|++||++++...+
T Consensus 358 ~se~g~~~~~~e~~----h~~~I------s~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 358 ASEDGKDYPELEDI----HSTTI------SSISYSSDGKYIATCGD 393 (420)
T ss_pred EcccCccchhHHHh----hcCce------eeEEecCCCcEEeeecc
Confidence 77776654322111 11111 13578999987765444
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=118.37 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=125.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCc-CcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av 747 (958)
.|.||++||..... ..|... .......|+++||.|++++. +..+. .... .......+.++.+++
T Consensus 67 ~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~~~~~~~~l~~~i~~l~~~l 132 (994)
T PRK07868 67 GPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--VEGGMERNLADHVVALSEAI 132 (994)
T ss_pred CCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--hHcCccCCHHHHHHHHHHHH
Confidence 47788899964221 112111 11235678899999999663 22111 0010 112233345667777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCCC-CCC-----------c-----------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-PFG-----------F----------- 803 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~-~~~-----------~----------- 803 (958)
+.+.+.. .+++.++||||||.+++.+++.+ +++++.+|.++...|.... +.. +
T Consensus 133 ~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (994)
T PRK07868 133 DTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDI 209 (994)
T ss_pred HHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCC
Confidence 7766553 24799999999999998888754 4589998876655432100 000 0
Q ss_pred cc--------------------------cc-c--------------hhh-hc-----H---HHHHhcCcc----------
Q 002164 804 QN--------------------------ED-R--------------TLW-EA-----T---STYVEMSPF---------- 823 (958)
Q Consensus 804 ~~--------------------------~~-~--------------~~~-~~-----~---~~~~~~sp~---------- 823 (958)
.. .. . .-| .. . ..+...+.+
T Consensus 210 p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~ 289 (994)
T PRK07868 210 PGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQ 289 (994)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCE
Confidence 00 00 0 001 00 0 001110111
Q ss_pred -cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEE-EEeCCCCccC--CCcccHHHHHHHHHHHHHHhhc
Q 002164 824 -MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--AARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 824 -~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~p~~~H~~--~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
..+.++++|+|+++|++|..+| +..+..+.+.+.. .++ .+++++||.. .......+++..+.+||.++-.
T Consensus 290 ~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~ 363 (994)
T PRK07868 290 MVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEG 363 (994)
T ss_pred EcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhcc
Confidence 1357888999999999999998 8888888776543 344 5678899983 3455667888999999999876
Q ss_pred cCCCC
Q 002164 900 SNTAD 904 (958)
Q Consensus 900 ~~~~~ 904 (958)
....+
T Consensus 364 ~~~~~ 368 (994)
T PRK07868 364 DGDKP 368 (994)
T ss_pred CCCCC
Confidence 55443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=92.49 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=186.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++...++||.|+++++.-.. +|.+|.-.. .. .|..+. ..
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~~----~~--~l~~~~-~~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGPS----KA--KLVRFR-HP 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEccccc----hh--heeeee-cC
Confidence 56788999999999876543 455553211 22 222122 23
Q ss_pred cccceeecCCCCeEEEEEeecc------ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~------~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
.+....+||.|++|..-.+..- ...-....++++||.++|....-........ -....+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6788899999999987655331 1111223479999999987654332222110 001257788888777754
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC----Ccccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~----~~~~~~~~~ 339 (958)
-...|+++++++...+..- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 1234777776442222111 156789999
Q ss_pred CCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEE
Q 002164 340 SPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (958)
Q Consensus 340 SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~ 416 (958)
||-|. -|+|-.-.. ...+..+.+|.+-.+ ..+..+-.. ...-.+.|.+.|+.|++.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence 99654 466655322 123456777776632 222212111 112468899999999998
Q ss_pred EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 496 (958)
+.+........ -+...||++++ .+...+........+-.++|+|+++..+..+.... ..+-..++.+.
T Consensus 241 ~~t~~ksnKsy--fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N----- 308 (561)
T COG5354 241 VMTHTKSNKSY--FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN----- 308 (561)
T ss_pred EEEeeecccce--eccceEEEEee---cccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc-----
Confidence 66543111100 12357899885 43333222244566788999999999888775554 34555565552
Q ss_pred EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccc
Q 002164 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (958)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~ 576 (958)
+.+-.+...- .. +.|||.++++++..-+ .....+-+||..+ +...+....+.
T Consensus 309 l~~~~Pe~~r----NT--~~fsp~~r~il~agF~------------------nl~gni~i~~~~~-rf~~~~~~~~~--- 360 (561)
T COG5354 309 LRFYFPEQKR----NT--IFFSPHERYILFAGFD------------------NLQGNIEIFDPAG-RFKVAGAFNGL--- 360 (561)
T ss_pred eEEecCCccc----cc--ccccCcccEEEEecCC------------------ccccceEEeccCC-ceEEEEEeecC---
Confidence 1211111110 01 4589999999886521 0122366677653 33333222211
Q ss_pred ceeEeecCCCccccccccCCEEEEEEecCC
Q 002164 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (958)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~ 606 (958)
+..-+.|||||..+.....+..
T Consensus 361 --------n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --------NTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --------CceEeeccCCceEEEecCCCcc
Confidence 1112579999987777666544
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=99.24 Aligned_cols=220 Identities=20% Similarity=0.203 Sum_probs=124.3
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC----cEE
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FAI 715 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~v 715 (958)
+.+.+.+.-..+....+|+|+++.+.. ++|++++.||-.+.. +... ......+.+.| -++
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~~-------------~g~i-~~~~dsli~~g~i~pai~ 133 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWFR-------------SGRI-PRILDSLIAAGEIPPAIL 133 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHHh-------------cCCh-HHHHHHHHHcCCCCCceE
Confidence 344444443356777899999987644 599999999942211 1111 12233455544 455
Q ss_pred EEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 716 LGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
|.+++.+-.-...... +..+...... +.+=++.+.. .-+.++-+|+|.|+||..+++++.++|++|..+++.+|
T Consensus 134 vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 134 VGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred EecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 5544432111111111 1111112222 2333444442 24567889999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.+.+....- ..-++.. ...+....+.....-++...++.+.. ....+++++.|+..|.++.+..|+|
T Consensus 211 s~~~~~~~~------~~~~~~~---~~l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~G 277 (299)
T COG2382 211 SFWWTPLDT------QPQGEVA---ESLKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYPG 277 (299)
T ss_pred ccccCcccc------ccccchh---hhhhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecCC
Confidence 766432210 0001111 11111112222233233334444444 3557889999999999999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 873 ESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
||... .+...+.++|...+
T Consensus 278 -gHdw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 278 -GHDWA------WWRPALAEGLQLLL 296 (299)
T ss_pred -CCchh------HhHHHHHHHHHHhh
Confidence 99863 33444566665544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-07 Score=104.70 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=124.7
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC----Cceeeecc
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL----GQEIEIQG 184 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~----~~~~~lt~ 184 (958)
.+..++||| |++.||..+.+ +.|.+|++...+.. .....+.+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~D---------------------------------gtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASED---------------------------------GTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CEEEEEecCCCccccccCcceEEecC
Confidence 577899999 89988887765 57899998653211 11233433
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
+...+....|+|++..++.+.. ....|.+||+.+++........... +..++|+|||+.|+...
T Consensus 124 --H~~~V~~l~f~P~~~~iLaSgs--------~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~spdG~lLatgs-- 187 (493)
T PTZ00421 124 --HTKKVGIVSFHPSAMNVLASAG--------ADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNLDGSLLCTTS-- 187 (493)
T ss_pred --CCCcEEEEEeCcCCCCEEEEEe--------CCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEECCCCEEEEec--
Confidence 2346888999999765444432 2567899999888765443322222 77899999999888761
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--ccccccccC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--AVYTSLDPS 340 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--~~~~~~~~S 340 (958)
....|.++|+ +++. ..+... .......|+
T Consensus 188 -----------------------------------------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 188 -----------------------------------------------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 2245777787 6643 233322 223457899
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
|++..|+.+.... ..++.|.+||+.... ......... ......+.|++|++.++...
T Consensus 221 ~~~~~ivt~G~s~---------s~Dr~VklWDlr~~~~p~~~~~~d~-----------~~~~~~~~~d~d~~~L~lgg-- 278 (493)
T PTZ00421 221 KRKDLIITLGCSK---------SQQRQIMLWDTRKMASPYSTVDLDQ-----------SSALFIPFFDEDTNLLYIGS-- 278 (493)
T ss_pred CCCCeEEEEecCC---------CCCCeEEEEeCCCCCCceeEeccCC-----------CCceEEEEEcCCCCEEEEEE--
Confidence 9988887654221 124589999987422 111111100 01223467999998776630
Q ss_pred ccCCCcccccccCCeEEEEeC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~ 440 (958)
...+.|.+|++
T Consensus 279 ----------kgDg~Iriwdl 289 (493)
T PTZ00421 279 ----------KGEGNIRCFEL 289 (493)
T ss_pred ----------eCCCeEEEEEe
Confidence 12557888886
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=100.03 Aligned_cols=170 Identities=9% Similarity=0.027 Sum_probs=97.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|++..++++.. .++.|.+||+.++... .+..+ ...+..+.|+|||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs------------~DgtVrIWDl~tg~~~~~l~~h-------------~~~V~sla~spdG 180 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAG------------ADMVVNVWDVERGKAVEVIKCH-------------SDQITSLEWNLDG 180 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEe------------CCCEEEEEECCCCeEEEEEcCC-------------CCceEEEEEECCC
Confidence 56788999999754444432 2348999999865432 33221 1346789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+.|+.. +..+.|.+||+ .++.....+..+.. ......|++++..|+...........|.++|+.
T Consensus 181 ~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 181 SLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 977663 44567899996 34433334433332 234578999988877654321111234445554
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
.. ..+....+..... ....+.|++|+..|+..... ...|++||+.+++....
T Consensus 246 ~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 246 KM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLTFC 297 (493)
T ss_pred CC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceEEE
Confidence 42 1222222211111 11124589999877765421 12588999987765444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=98.16 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=143.2
Q ss_pred eecCCCCCccceeeEeceeEEEccC-CCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc
Q 002164 148 RIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV 226 (958)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~ 226 (958)
.+++.+.....++.+..+..||+.. |.+....++|. ..++..+...+|||.|..|+.+.. ..+..++|.
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvsg---------~aqakl~DR 243 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVSG---------SAQAKLLDR 243 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEec---------CcceeEEcc
Confidence 3566666666666667899999843 11122234442 113337889999999999999763 556677777
Q ss_pred CCCceeeccCCCC--------ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhh
Q 002164 227 DTGKARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (958)
Q Consensus 227 ~~g~~~~lt~~~~--------~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~ 298 (958)
+|-+......+.. .+..+.+....|.|+.+-.|.+... +
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~--------------------D------------- 290 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY--------------------D------------- 290 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------------C-------------
Confidence 6655433322111 0112234567799999877766211 0
Q ss_pred ccCchhhhHHHHhhcceEEEEEcCC-eeeec---CC-C--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 299 LKDEYDEDLFDYYATTQLVLVSLDG-TVKEI---GP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~l---~~-~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
+.-+||.++-.. +.+.+ .. + -.++..+|+|||++||..-. ++.|.+|
T Consensus 291 -------------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~-------------DGSIQ~W 344 (641)
T KOG0772|consen 291 -------------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL-------------DGSIQIW 344 (641)
T ss_pred -------------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhccc-------------CCceeee
Confidence 223344443322 11111 11 1 34578899999999876653 4589999
Q ss_pred eccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE
Q 002164 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL 451 (958)
Q Consensus 372 d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l 451 (958)
+..+...+.......+ -.+ ...+..++||+||+.|+-. +..+.+-+||+ .+-+++-..
T Consensus 345 ~~~~~~v~p~~~vk~A-H~~------g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDL--rq~kkpL~~ 402 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDA-HLP------GQDITSISFSYDGNYLLSR-------------GFDDTLKVWDL--RQFKKPLNV 402 (641)
T ss_pred ecCCcccccceEeeec-cCC------CCceeEEEeccccchhhhc-------------cCCCceeeeec--cccccchhh
Confidence 9754333222111000 000 0256789999999998763 56677888886 222222111
Q ss_pred -Ee--eccccCceeeecCCceEEEEEecc--ccceEEEEEcCCC
Q 002164 452 -HK--LDLRYGGISWCDDSLALVYESWYK--TRRTRTWVISPGS 490 (958)
Q Consensus 452 -~~--~~~~~~~~~~spDg~~l~~~~~~~--~~~~~l~~~~~~~ 490 (958)
+. ....-....||||.+.|+...... .....|+.++..+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 21 122335689999998887654321 1224588877665
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-06 Score=105.39 Aligned_cols=228 Identities=12% Similarity=0.133 Sum_probs=132.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce--e----eccCCCCccccccccceEEecC-CeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R----PLFQSPDIYLNAIFDNFVWVNN-STLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--~----~lt~~~~~~~~~~~~~~~wspD-G~~l~~~ 261 (958)
..+....|+|||++||... ....|.+|+..+... . .+..... ...+..++|+|. +..|+..
T Consensus 484 ~~V~~i~fs~dg~~latgg---------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG---------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CcEEEEEECCCCCEEEEEe---------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 4688899999999988854 255677777643110 0 0000000 011567889864 6666655
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~ 338 (958)
. ....|.++|+ +++. ..+... ..+..++
T Consensus 552 ~-------------------------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 N-------------------------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred e-------------------------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 1 1245677777 6643 344444 6788999
Q ss_pred cCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeee-cCCCCceE
Q 002164 339 PSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLY 415 (958)
Q Consensus 339 ~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG~~l~~ 415 (958)
|+| ||..|+..+. ++.+.+||+..+.. ..+... ..+..+.|+ ++|..++.
T Consensus 583 ~~p~~~~~L~Sgs~-------------Dg~v~iWd~~~~~~~~~~~~~--------------~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 583 YSSADPTLLASGSD-------------DGSVKLWSINQGVSIGTIKTK--------------ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EcCCCCCEEEEEcC-------------CCEEEEEECCCCcEEEEEecC--------------CCeEEEEEeCCCCCEEEE
Confidence 997 7887777763 34899999985432 222211 123467784 56777666
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC--C
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK--D 492 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~--~ 492 (958)
- +..+.|++||+ ..+.. ...+..+...+..+.|+ ++..|+..+.++. .+||.+..... .
T Consensus 636 g-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~--ikiWd~~~~~~~~~ 697 (793)
T PLN00181 636 G-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT--LKLWDLSMSISGIN 697 (793)
T ss_pred E-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE--EEEEeCCCCccccC
Confidence 2 44668999996 22222 23444455567778897 6777776654443 56666543211 0
Q ss_pred CCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
......+......+.. +.|+|+|++|+...
T Consensus 698 ~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs 727 (793)
T PLN00181 698 ETPLHSFMGHTNVKNF------VGLSVSDGYIATGS 727 (793)
T ss_pred CcceEEEcCCCCCeeE------EEEcCCCCEEEEEe
Confidence 1122222222222221 67999999888776
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-07 Score=101.26 Aligned_cols=310 Identities=11% Similarity=0.012 Sum_probs=147.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.+.+.|..+ .....++. .+. ......+||||++++...+ ...|-++|+.+++..+-......
T Consensus 16 ~~v~viD~~t---~~~~~~i~---~~~~~h~~~~~s~Dgr~~yv~~r---------dg~vsviD~~~~~~v~~i~~G~~- 79 (369)
T PF02239_consen 16 GSVAVIDGAT---NKVVARIP---TGGAPHAGLKFSPDGRYLYVANR---------DGTVSVIDLATGKVVATIKVGGN- 79 (369)
T ss_dssp TEEEEEETTT----SEEEEEE----STTEEEEEE-TT-SSEEEEEET---------TSEEEEEETTSSSEEEEEE-SSE-
T ss_pred CEEEEEECCC---CeEEEEEc---CCCCceeEEEecCCCCEEEEEcC---------CCeEEEEECCcccEEEEEecCCC-
Confidence 3678877633 11233332 222 2344678999998777542 34799999998876543333332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+++|+||++++.+.. ...++.++|.
T Consensus 80 ----~~~i~~s~DG~~~~v~n~------------------------------------------------~~~~v~v~D~ 107 (369)
T PF02239_consen 80 ----PRGIAVSPDGKYVYVANY------------------------------------------------EPGTVSVIDA 107 (369)
T ss_dssp ----EEEEEE--TTTEEEEEEE------------------------------------------------ETTEEEEEET
T ss_pred ----cceEEEcCCCCEEEEEec------------------------------------------------CCCceeEecc
Confidence 458999999999987610 2245667776
Q ss_pred -CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 322 -DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 322 -~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
+.+. +.+... ..+..+.-||++..+++...+ .++++++|........++.....
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~~g---- 171 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIKVG---- 171 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE------
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeeccc----
Confidence 5432 233221 233455567887766666533 34888888664322111111111
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-e----c-------cccC
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-L----D-------LRYG 459 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~----~-------~~~~ 459 (958)
.......|+|||++++... ...+.+-++|. ..++...+.. . . ....
T Consensus 172 -------~~~~D~~~dpdgry~~va~------------~~sn~i~viD~---~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 172 -------RFPHDGGFDPDGRYFLVAA------------NGSNKIAVIDT---KTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp -------TTEEEEEE-TTSSEEEEEE------------GGGTEEEEEET---TTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred -------ccccccccCcccceeeecc------------cccceeEEEee---ccceEEEEeeccccccccccccccCCCc
Confidence 2335678999999876631 22446666764 3332222211 1 1 1112
Q ss_pred ceeeecCCc--eEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 460 GISWCDDSL--ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 460 ~~~~spDg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
++.|.-.+. ..+-....+. +.+++...- +.....+.....++ +.-+||+++++....-.
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~----v~v~d~~~w--kvv~~I~~~G~glF-------i~thP~s~~vwvd~~~~------ 290 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDP----VSVHDDYAW--KVVKTIPTQGGGLF-------IKTHPDSRYVWVDTFLN------ 290 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--T----TT-STTTBT--SEEEEEE-SSSS---------EE--TT-SEEEEE-TT-------
T ss_pred ceEEeeccccceecccccCCc----cccchhhcC--eEEEEEECCCCcce-------eecCCCCccEEeeccCC------
Confidence 234433322 1111111111 001122211 11111111111111 56799999988763110
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceE-EEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKE-RIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
.+...|.++|.++-+.. .+....+. ... .+.|++||++++++...... .|.++|.
T Consensus 291 -----------~~~~~v~viD~~tl~~~~~i~~~~~~----~~~-------h~ef~~dG~~v~vS~~~~~~--~i~v~D~ 346 (369)
T PF02239_consen 291 -----------PDADTVQVIDKKTLKVVKTITPGPGK----RVV-------HMEFNPDGKEVWVSVWDGNG--AIVVYDA 346 (369)
T ss_dssp -----------SSHT-EEEEECCGTEEEE-HHHHHT------EE-------EEEE-TTSSEEEEEEE--TT--EEEEEET
T ss_pred -----------CCCceEEEEECcCcceeEEEeccCCC----cEe-------ccEECCCCCEEEEEEecCCC--EEEEEEC
Confidence 11347999999887543 33322221 011 25799999999998876554 7999998
Q ss_pred CCCCe
Q 002164 617 PDKKS 621 (958)
Q Consensus 617 ~~g~~ 621 (958)
.+.+.
T Consensus 347 ~Tl~~ 351 (369)
T PF02239_consen 347 KTLKE 351 (369)
T ss_dssp TTTEE
T ss_pred CCcEE
Confidence 77654
|
... |
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=119.31 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=91.1
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-C-cEEEEcCCC-CCCCCC
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~vl~~~~~-~~~G~G 727 (958)
-+...+|.|....+. .++|+||++|||++..+.. ..+ ....|+++ + ++|+.++|| +..|+.
T Consensus 78 cl~l~i~~p~~~~~~--~~~pv~v~ihGG~~~~g~~--------~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPG--NSLPVMVWIHGGGFMFGSG--------SLY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCC--CCCCEEEEEcCCccccCCC--------CCC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 466788999764322 2489999999997654321 111 12245544 3 899998887 566665
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCC
Q 002164 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (958)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (958)
............+.|+..|++|+.++ --.|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222223345688999999999986 23799999999999999999988876 3457999999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=92.14 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=127.2
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~ 731 (958)
.+..++.|.. .+.+|+|+++||.. -+..++....+.++++||+|++++.....+
T Consensus 33 kpLlI~tP~~-----~G~yPVilF~HG~~---------------l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~------ 86 (307)
T PF07224_consen 33 KPLLIVTPSE-----AGTYPVILFLHGFN---------------LYNSFYSQLLAHIASHGFIVVAPQLYTLFP------ 86 (307)
T ss_pred CCeEEecCCc-----CCCccEEEEeechh---------------hhhHHHHHHHHHHhhcCeEEEechhhcccC------
Confidence 4556777754 45699999999942 122334456677899999999977743322
Q ss_pred chhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhCC-C-ceeEEEEeccCCCCCCCCC
Q 002164 732 NDRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHAP-H-LFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 732 ~~~~~~~~~~D~~~av~~l~~~--~------~~d~~~i~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~~~~~~~~~~~ 801 (958)
.....++++..++++||.+. . ..+.++++++|||.||-.|.++|..+. + .|.++|.+.|+....-.
T Consensus 87 --p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~-- 162 (307)
T PF07224_consen 87 --PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKG-- 162 (307)
T ss_pred --CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCC--
Confidence 12357788999999999873 1 256789999999999999999998652 2 48888888887432110
Q ss_pred CcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCC-----CCCCCChH--HHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.++ .|.. ..+.|.. =++..|++||...-- -..||-+. +-++||+..|. ++-..+..+-|
T Consensus 163 -----~~t---~P~i-Lty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYG 228 (307)
T PF07224_consen 163 -----KQT---PPPI-LTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYG 228 (307)
T ss_pred -----CCC---CCCe-eecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccc
Confidence 000 0000 0011100 124589999874333 12233344 35789998875 35555556667
Q ss_pred ccCCC------------------ccc-----HHHHHHHHHHHHHHhhccC
Q 002164 875 HGYAA------------------RES-----IMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 875 H~~~~------------------~~~-----~~~~~~~i~~fl~~~l~~~ 901 (958)
|.-.- .+. +.-+-..+++||+.+|.+.
T Consensus 229 HmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 229 HMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred cccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 75210 011 1222335799999998654
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=96.75 Aligned_cols=218 Identities=15% Similarity=0.061 Sum_probs=124.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE--cCCCCCCC----
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIG---- 725 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~--~~~~~~~G---- 725 (958)
.+..++.|...+... .|++|++.|.. -+.|-......+..|++.|++.+. .+|++.+-
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTG-------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTG-------------DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCC-------------ccchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 444567787753322 79999999842 122322233346678888998776 34432221
Q ss_pred CCCccc-chhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC-----
Q 002164 726 EGDEEA-NDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR----- 796 (958)
Q Consensus 726 ~G~~~~-~~~~---~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~----- 796 (958)
.+.... -.+. +...+.+....+.|+.++++. +++|.|.||||.||..+++..|..+..+-+.++.+..
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~ 217 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTE 217 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhh
Confidence 000000 0111 345688999999999999764 9999999999999999999998876666655542210
Q ss_pred -CC---CCCCcc-cc---------c----c-----------hhhhcHHHH----HhcCcccccCCCC-----CCEEEEee
Q 002164 797 -TL---TPFGFQ-NE---------D----R-----------TLWEATSTY----VEMSPFMSANKLK-----KPILLVHG 838 (958)
Q Consensus 797 -~~---~~~~~~-~~---------~----~-----------~~~~~~~~~----~~~sp~~~~~~~~-----~P~Lii~G 838 (958)
.+ ..|..- .+ . . .-+...+.. ..+.-..++.+.. ..+.++.+
T Consensus 218 Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A 297 (348)
T PF09752_consen 218 GVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAA 297 (348)
T ss_pred hhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEe
Confidence 00 011000 00 0 0 000001111 1112223344433 34788999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|.+|| ..+...|-+.... +|+.++++ ||.-.-......+.+.|.+=|+
T Consensus 298 ~~DaYVP--r~~v~~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 298 KNDAYVP--RHGVLSLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cCceEec--hhhcchHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 9999998 6666666555543 47777888 9975333344455556665544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-06 Score=92.07 Aligned_cols=305 Identities=13% Similarity=0.138 Sum_probs=162.1
Q ss_pred HHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 103 REIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 103 ~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
.+-|..|.+....|||..++|+.-+.. ....+++.+.. ..|.|||+.+ |... +..
T Consensus 244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~----------------p~~~~~~d~e~------~~l~IWDI~t-G~lk--rsF 298 (698)
T KOG2314|consen 244 IQRFYHPGVQFIDFSPNEKYLVTYSPE----------------PIIVEEDDNEG------QQLIIWDIAT-GLLK--RSF 298 (698)
T ss_pred HHhccCCCceeeecCCccceEEEecCC----------------ccccCcccCCC------ceEEEEEccc-cchh--cce
Confidence 344566788899999999999876643 01112222222 3799999966 3221 222
Q ss_pred ccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 183 QGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 183 t~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
....+.. .-....||-|+|++|-.. ...|-+++..+-.....-...-. ++..+.|||-+..|+|.
T Consensus 299 ~~~~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~lld~Kslki~----gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 299 PVIKSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFMLLDKKSLKIS----GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred eccCCCccccceEEeccCCceeEEec----------cceEEEEecCceeeecccccCCc----cccCcccCCCcceEEEE
Confidence 1111111 334468999999988754 34555665433111100000101 16789999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCCcccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAVYTSL 337 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~~~~~ 337 (958)
++..... | ..+-++.+ ++.. ++|.+ -..-..
T Consensus 365 tpe~~~~-------p-------------------------------------arvtL~evPs~~~iRt~nlfn-VsDckL 399 (698)
T KOG2314|consen 365 TPETNNI-------P-------------------------------------ARVTLMEVPSKREIRTKNLFN-VSDCKL 399 (698)
T ss_pred cccccCC-------c-------------------------------------ceEEEEecCccceeeecccee-eeccEE
Confidence 5443222 1 11333444 3321 12211 112345
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
-|-..|++|.|-..+.+-.. ....-.++.|+.+..+.. .+...+ ...-+-.++|-|.|.+.++..
T Consensus 400 hWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI-pve~ve-----------lke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI-PVEVVE-----------LKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred EeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC-Cceeee-----------cchheeeeeeccCCCeEEEEE
Confidence 68899999999876533110 011112455555543321 111111 112345789999999988862
Q ss_pred EeccCCCcccccccCCe--EEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002164 418 ETQDGGDAKVEVTPRDI--IYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
-. ..... .|-+.. ++++++.+.. ....+..+.|||.|+.++.+.-.. .+..|+-+|++-.+..
T Consensus 465 g~----------~~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 465 GN----------TVKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYADLK 530 (698)
T ss_pred cc----------ccccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchhhhh
Confidence 21 11223 444432 4444444422 224467799999999998876443 3356888877642111
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.....+.. ....+-|.|.|++++..+
T Consensus 531 ~~~~~eh~--------~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 531 DTASPEHF--------AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hccCcccc--------ccccceECCCCCEEEEee
Confidence 11111111 111267999999988765
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=90.44 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---CCCc---ccccchhhhcHHHHHhcCccccc-CCCC
Q 002164 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~~~ 830 (958)
++.++|+|.|+||+.|.+++.+.+ +++ |+++|....... ..+. .......+-....+.+...+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998883 555 777887552210 0000 00011111111112221111111 1224
Q ss_pred CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.++++++++.|++++ +..+...++ . +..++.+|.+|.+.+ ..+.+..|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~---~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYR---G----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhc---C----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 689999999999998 765555443 2 244466888999864 456678888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-06 Score=96.56 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|+++.++.+... ++.|.+||+.++... .+. .. ..+..+.|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~-~~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQIN-MP-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEe-cC-------------CcEEEEEECCCC
Confidence 567899999999987665422 348999999865432 221 11 235789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCc-----eeeecCCceEEEEEeccccceEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
+.++.. .....|.+||+ ..+.....+..+.+.... ..|++|+++|+.+...+.....|.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 977652 33457899996 334333444333332211 2346899988877654432123555
Q ss_pred EcCCC
Q 002164 486 ISPGS 490 (958)
Q Consensus 486 ~~~~~ 490 (958)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55543
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.6e-09 Score=108.39 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=100.4
Q ss_pred cEEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
|.|++ .+.+|.|.+.. ..........|+.+.++.+++.-.+ +++.++||||||.+++.+++++|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 56667777763 1333344567777777777776334 46999999999999999999999999999999
Q ss_pred ccCC--CC----CCCCC-Cccc---------------------c------cch---------hhh---c-----------
Q 002164 791 SGAY--NR----TLTPF-GFQN---------------------E------DRT---------LWE---A----------- 813 (958)
Q Consensus 791 ~~~~--~~----~~~~~-~~~~---------------------~------~~~---------~~~---~----------- 813 (958)
+++. .. ..... .+.. . ... .+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8851 00 00000 0000 0 000 000 0
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 814 ---~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
...+...++...+.++++|+|+++|++|..+| +.....+.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00111122334566799999999999999998 8877775554443 7899999999986
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=97.81 Aligned_cols=219 Identities=10% Similarity=0.068 Sum_probs=149.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee---ccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---lt~~~~ 239 (958)
+-|.||+++..|...+..+|--++.+..+.....+|||+.|+. +.+...|-+||+..-.++. |+...-
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcch
Confidence 4789999976554344555555555668889999999999998 4557788899988755432 222111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. -..++.|||.+..|... ..++|.++
T Consensus 511 a-----CyALa~spDakvcFscc-------------------------------------------------sdGnI~vw 536 (705)
T KOG0639|consen 511 A-----CYALAISPDAKVCFSCC-------------------------------------------------SDGNIAVW 536 (705)
T ss_pred h-----hhhhhcCCccceeeeec-------------------------------------------------cCCcEEEE
Confidence 1 23677899998777541 23567788
Q ss_pred Ec-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccc
Q 002164 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 320 ~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~ 396 (958)
|+ +.. ++++... ++...+.+|+||..|....- ++.+.-||+..+. ++..+...
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlregr--qlqqhdF~--------- 592 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREGR--QLQQHDFS--------- 592 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhhh--hhhhhhhh---------
Confidence 88 654 4555444 77889999999999986553 4489999998432 22222211
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEec
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
..+.++.+.|.|.++++- =+...+++... .+.+..+|..++.-+-++.|++-|++.+.+..+
T Consensus 593 --SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 593 --SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred --hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCch
Confidence 234577889999999983 23456788774 556667788888888899999999998776433
Q ss_pred cccceEEEEEcC
Q 002164 477 KTRRTRTWVISP 488 (958)
Q Consensus 477 ~~~~~~l~~~~~ 488 (958)
+- ...|+..-
T Consensus 655 nl--LnawrtPy 664 (705)
T KOG0639|consen 655 NL--LNAWRTPY 664 (705)
T ss_pred hh--hhhccCcc
Confidence 32 44666543
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-07 Score=81.94 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=99.3
Q ss_pred HHHHHHHHCCcEEEE--cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 703 TSVLLWLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~--~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
..+..|+.+|+.|.. .+|+-.+-+|....+ ......-.....++..|.+. .+..++++.|+||||-++.+++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp-~~~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPP-PGSGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCc-CccccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 446678999999987 333333334422111 11112222333445555555 3456899999999999999988754
Q ss_pred CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
.-.+.+++|.+-.+... +- |+. --..++..+++|+||+||+.|..-. .++. ... .
T Consensus 111 ~A~i~~L~clgYPfhpp----GK----------Pe~----~Rt~HL~gl~tPtli~qGtrD~fGt--r~~V---a~y--~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFHPP----GK----------PEQ----LRTEHLTGLKTPTLITQGTRDEFGT--RDEV---AGY--A 165 (213)
T ss_pred cCCcceEEEecCccCCC----CC----------ccc----chhhhccCCCCCeEEeecccccccC--HHHH---Hhh--h
Confidence 33478888876433211 11 111 1124667789999999999998754 3332 111 2
Q ss_pred CCCcEEEEEeCCCCccCCCcc---------cHHHHHHHHHHHHHH
Q 002164 861 HGALCRLVILPFESHGYAARE---------SIMHVLWETDRWLQK 896 (958)
Q Consensus 861 ~g~~~~~~~~p~~~H~~~~~~---------~~~~~~~~i~~fl~~ 896 (958)
...++|++++.++.|.+-... ......+++..|+.+
T Consensus 166 ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 166 LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 235799999999999873221 123344556666654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-08 Score=95.78 Aligned_cols=256 Identities=11% Similarity=0.110 Sum_probs=156.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhccccc-----------------ceeeceeecCCCCCccceeeEeceeEEEccCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPE-----------------EKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d 173 (958)
+-...|||||++++..+-++-..++.+..-. .-+--+.++.+......++-++.|.+|.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 4457899999999998876444444332111 1112244555555555555667899999966
Q ss_pred CCCCc-eeeec-cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE
Q 002164 174 GKLGQ-EIEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 174 g~~~~-~~~lt-~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (958)
|. .|+.. .++ ..+...+||-|+.+|+-.+. ...+.+.-+++|+..+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~sf---------D~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSASF---------DQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhcccc---------cceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 33 33332 122 36889999999999988542 445666677777765444433332 668889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----ee
Q 002164 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (958)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~ 326 (958)
++||..|+..+.+ ..+-+++. +++ .+
T Consensus 357 t~dG~~iisaSsD-------------------------------------------------gtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISASSD-------------------------------------------------GTVKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEecCC-------------------------------------------------ccEEEecCcchhhhhhcc
Confidence 9999999876221 12333333 332 12
Q ss_pred ecCCCccccccccCCCC-cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee
Q 002164 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
.+.....+.++-.-|.. .++++- ++ .+.++++++.|.-++..+...... +..-...
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVC-Nr------------sntv~imn~qGQvVrsfsSGkREg----------GdFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVC-NR------------SNTVYIMNMQGQVVRSFSSGKREG----------GDFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEE-cC------------CCeEEEEeccceEEeeeccCCccC----------CceEEEE
Confidence 22222334444444433 333333 22 348999999998888877654332 2224567
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (958)
.||.|.+++.. +++..+|-+.. ..|+-.+.+.-++.++-+++-.|-.+-|+.
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhhh
Confidence 89999999985 56667888775 567667777767777777777776655553
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-06 Score=89.64 Aligned_cols=332 Identities=13% Similarity=0.106 Sum_probs=186.6
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
....+|++|+.+|+.... .++|.+... +. ..++..+ ...
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~--~~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVEL--KKT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEecc--cee
Confidence 456789999999998874 678877644 22 3444333 257
Q ss_pred cceeecCCCCeEEEEEeeccc-cCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
....+||-|.+|..-....-. ++..+..++-+++++++..+--...... + -..+.||+|..+.+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~--~W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--N--GWVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--c--Ccccccccchhhhhhh---------
Confidence 888999999988764433212 2223346777888777433211111110 0 1267888887665543
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecCCCccccccccCCCCc--E
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEK--Y 345 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDGk--~ 345 (958)
-.+.++.+++ .+....|.. ..++.+.+||-+. .
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 1234555665 233334432 4677888888755 3
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe-ccCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET-QDGG 423 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~-~~~~ 423 (958)
|++-.-. -...+..+.||... .+....+.... +|. ..--.+.|.+-|..|++.+.. .|..
T Consensus 182 vAvyvPe--------~kGaPa~vri~~~~~~~~~~~~a~ks-------FFk---adkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 182 VAVYVPE--------KKGAPASVRIYKYPEEGQHQPVANKS-------FFK---ADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred EEEEccC--------CCCCCcEEEEeccccccccchhhhcc-------ccc---cceeEEEeccCCceEEEEEEEeecCC
Confidence 4333211 12234566666554 12111211110 000 011357899999998887443 2332
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+..+ -+...||+++. +|.....-....+.+-.+.|+|+|+..+..-.... ..+-++++++ ..+++...
T Consensus 244 n~SY--YGEq~Lyll~t---~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP--Akvtifnlr~-----~~v~df~e 311 (566)
T KOG2315|consen 244 NASY--YGEQTLYLLAT---QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP--AKVTIFNLRG-----KPVFDFPE 311 (566)
T ss_pred Cccc--cccceEEEEEe---cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc--ceEEEEcCCC-----CEeEeCCC
Confidence 2222 23456899885 54332222344677888999999998877665554 4566677766 23443332
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeec
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~ 583 (958)
+.... +-|+|-|..|++..- |. -...+-+||.... +.+......
T Consensus 312 gpRN~------~~fnp~g~ii~lAGF--------------GN----L~G~mEvwDv~n~--K~i~~~~a~---------- 355 (566)
T KOG2315|consen 312 GPRNT------AFFNPHGNIILLAGF--------------GN----LPGDMEVWDVPNR--KLIAKFKAA---------- 355 (566)
T ss_pred CCccc------eEECCCCCEEEEeec--------------CC----CCCceEEEeccch--hhccccccC----------
Confidence 22111 558999998887751 11 1335889998763 333332211
Q ss_pred CCCccccccccCCEEEEEEecCC
Q 002164 584 SDQTEGDLYLNQLKILTSKESKT 606 (958)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~ 606 (958)
+..-+.|+|||.+++....++.
T Consensus 356 -~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred -CceEEEEcCCCcEEEEEecccc
Confidence 1112579999999888777654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=97.45 Aligned_cols=269 Identities=9% Similarity=0.099 Sum_probs=161.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|.|+|++|+..+.. +..-+|+... ..-+..+.. +..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~---fnFEtilQa--HDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS---FNFETILQA--HDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce---eeHHHHhhh--hcc
Confidence 35678999999999987763 3455666421 112233322 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....||++|.+++- ++...-|-.|+..=...+-+....... +..+++||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7899999999999987 334555656655433332222222122 77899998666555441
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
..+.|-+.|. ..+.+.|..+ ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1233445554 4456667655 778999999987766
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+..+.+ +-|.+||..++.. |.+.... ..-+..+.|+|+|.+|+-.
T Consensus 238 asgskD-------------nlVKlWDprSg~c--l~tlh~H----------KntVl~~~f~~n~N~Llt~---------- 282 (464)
T KOG0284|consen 238 ASGSKD-------------NLVKLWDPRSGSC--LATLHGH----------KNTVLAVKFNPNGNWLLTG---------- 282 (464)
T ss_pred EEccCC-------------ceeEeecCCCcch--hhhhhhc----------cceEEEEEEcCCCCeeEEc----------
Confidence 655533 3688999885432 2221111 1234678999999877662
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 506 (958)
+.+..+-++|+ ..=++......+...+..+.|+|=-.-|+.+...++. ...|.+.+... ...+...+...+
T Consensus 283 ---skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p---~~~i~~AHd~~i 353 (464)
T KOG0284|consen 283 ---SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEP---LGEIPPAHDGEI 353 (464)
T ss_pred ---cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccccc---ccCCCcccccce
Confidence 34445677775 1112223334456678889999988877766554432 55666663332 122333344455
Q ss_pred cCCCCCCceEeccCCceEEEEe
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~ 528 (958)
++ ++|.|=|..|+.++
T Consensus 354 ws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 354 WS------LAYHPLGHILATGS 369 (464)
T ss_pred ee------eeccccceeEeecC
Confidence 55 78999997766654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-06 Score=89.63 Aligned_cols=300 Identities=12% Similarity=0.137 Sum_probs=160.6
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeecc
Q 002164 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (958)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~ 184 (958)
-+..+.+..+.|||.|++|..-+.. ++ ++|+ ....-.....++.+||..+ +. .+.+
T Consensus 68 ~~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe-~e~sp~~~~n~~~vwd~~s----g~--iv~s 123 (561)
T COG5354 68 RFRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPE-IEISPFTSKNNVFVWDIAS----GM--IVFS 123 (561)
T ss_pred eeecCCceecccCcccceeeeeccC---Cc--------------cChh-hccCCccccCceeEEeccC----ce--eEee
Confidence 3445678899999999999887664 00 0111 1111112223689999854 22 1211
Q ss_pred CCC--CC--cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc-ccccceEEecC--CeE
Q 002164 185 FPD--GA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNN--STL 257 (958)
Q Consensus 185 ~~~--~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~-~~~~~~~wspD--G~~ 257 (958)
+.. .. .-....||-|.+++|.+. ...|+++++ ++..-+. +...+. ..+..+.|||. +..
T Consensus 124 f~~~~q~~~~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 124 FNGISQPYLGWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDE 189 (561)
T ss_pred ccccCCcccccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCce
Confidence 111 11 112467899999999875 568899987 4433222 111011 12678999986 456
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeee--ecCCCcccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVK--EIGPPAVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~--~l~~~~~~~ 335 (958)
|+|.++...+. | ..-.||.+..+...+ .+.. ..--
T Consensus 190 la~~tPEk~~k-------p-----------------------------------a~~~i~sIp~~s~l~tk~lfk-~~~~ 226 (561)
T COG5354 190 LAYWTPEKLNK-------P-----------------------------------AMVRILSIPKNSVLVTKNLFK-VSGV 226 (561)
T ss_pred EEEEccccCCC-------C-----------------------------------cEEEEEEccCCCeeeeeeeEe-eccc
Confidence 77775554443 1 112233333222211 2221 2224
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.+.|.+.|++|.+...... ..+..+. ...+++|+++.+...+..... .+-+.++.|+|+++..++
T Consensus 227 qLkW~~~g~~ll~l~~t~~-ksnKsyf-gesnLyl~~~~e~~i~V~~~~-------------~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHT-KSNKSYF-GESNLYLLRITERSIPVEKDL-------------KDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred EEEEecCCceEEEEEEEee-eccccee-ccceEEEEeecccccceeccc-------------cccceeeeecccCCceeE
Confidence 6789999999988765432 1111011 135899999885554432211 134568999999999887
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
..-..+ ..+-..++ .|. .+ .......-..+.|||.+++|++..-.+.. ..+-++++.+. .
T Consensus 292 i~g~~p-----------a~~s~~~l---r~N-l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~-gni~i~~~~~r---f 351 (561)
T COG5354 292 ISGYMP-----------ASVSVFDL---RGN-LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQ-GNIEIFDPAGR---F 351 (561)
T ss_pred Eecccc-----------cceeeccc---ccc-eE-EecCCcccccccccCcccEEEEecCCccc-cceEEeccCCc---e
Confidence 532211 12333332 332 11 11223334457899999999997654432 44666676663 2
Q ss_pred EEE--eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 496 RIL--FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 496 ~~~--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..+ +...... ...|||||+++....
T Consensus 352 ~~~~~~~~~n~s--------~~~wspd~qF~~~~~ 378 (561)
T COG5354 352 KVAGAFNGLNTS--------YCDWSPDGQFYDTDT 378 (561)
T ss_pred EEEEEeecCCce--------EeeccCCceEEEecC
Confidence 332 2222111 145999998765443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-06 Score=99.31 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=129.6
Q ss_pred CCCCceecCC-CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC-----Cceeeec
Q 002164 110 PLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-----GQEIEIQ 183 (958)
Q Consensus 110 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~-----~~~~~lt 183 (958)
.+..++|+|+ ++.||..+.+ +.|.||++...+.. .....+.
T Consensus 76 ~V~~lafsP~~~~lLASgS~D---------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSED---------------------------------LTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CeEEEEECCCCCccccccccceEEee
Confidence 5778899997 7787777665 47899998643210 0112333
Q ss_pred cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 184 GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
++ ...+....|+|++..++.+.. ....|.+||+.+++.......+.. +..++|+|||+.|+.+.
T Consensus 123 gH--~~~V~sVaf~P~g~~iLaSgS--------~DgtIrIWDl~tg~~~~~i~~~~~-----V~SlswspdG~lLat~s- 186 (568)
T PTZ00420 123 GH--KKKISIIDWNPMNYYIMCSSG--------FDSFVNIWDIENEKRAFQINMPKK-----LSSLKWNIKGNLLSGTC- 186 (568)
T ss_pred cC--CCcEEEEEECCCCCeEEEEEe--------CCCeEEEEECCCCcEEEEEecCCc-----EEEEEECCCCCEEEEEe-
Confidence 32 346889999999998765432 245788899988765432222221 67899999999988651
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccc-----c
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVY-----T 335 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~-----~ 335 (958)
....|.++|+ +++. ..+..+ +.. .
T Consensus 187 ------------------------------------------------~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 187 ------------------------------------------------VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred ------------------------------------------------cCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 1234777777 6643 233222 221 1
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
...|++|+++|+.+...+. ..+++.+||+.. +.......+... .+.-.+.|.+|...++
T Consensus 219 ~~~fs~d~~~IlTtG~d~~---------~~R~VkLWDlr~~~~pl~~~~ld~~-----------~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKN---------NMREMKLWDLKNTTSALVTMSIDNA-----------SAPLIPHYDESTGLIY 278 (568)
T ss_pred eeeEcCCCCEEEEEEcCCC---------CccEEEEEECCCCCCceEEEEecCC-----------ccceEEeeeCCCCCEE
Confidence 1235799999888764321 123799999983 322221111111 1112245656543333
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--ccccCceeeecC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDD 466 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spD 466 (958)
+. ..+...|++|++ ..+....|... .....+++|.|+
T Consensus 279 ls------------GkGD~tIr~~e~---~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LI------------GKGDGNCRYYQH---SLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EE------------EECCCeEEEEEc---cCCcEEeecccccCCCccceEEccc
Confidence 32 134567888885 33445555322 223456777775
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=99.83 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=154.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeec--------eeecCCCCCccceeeEeceeEEEccCCCCCCceeee
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAG--------LRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l 182 (958)
...+.|.|||+.|.....+.....+.-.-.+.+... ..+.-.+......+.++.+.++.+.. + .....|
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~--~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-G--EEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-C--Ccccee
Confidence 456889999998888766532222211111111111 11112222223333345677777743 2 112234
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
+.++ -.+...+++-+|++||+.+ ....|-+++.+++...+.+...... +..+.+.|.|.+|++++
T Consensus 93 ~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 93 ARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVSS 157 (933)
T ss_pred eeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEEe
Confidence 3333 3478889999999999954 4778889998876665555444433 77889999999999872
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecC---CC------
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP------ 331 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~---~~------ 331 (958)
..++++++++ +|... .++ ..
T Consensus 158 -------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 158 -------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILS 188 (933)
T ss_pred -------------------------------------------------cCceEEEEEcccchhhhhcccCCcccccccc
Confidence 3355777777 66321 121 11
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|||..+++...+ +.|-+|+.++.+..- |...... .....+.|||.|
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d-------------~~Vkvy~r~~we~~f~Lr~~~~s-----------s~~~~~~wsPnG 244 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVD-------------NTVKVYSRKGWELQFKLRDKLSS-----------SKFSDLQWSPNG 244 (933)
T ss_pred ceeeeeeecCCCCeEEeeccC-------------CeEEEEccCCceeheeecccccc-----------cceEEEEEcCCC
Confidence 234678999997777776643 378888888765432 2221111 235678999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
++|+.. .-.++|-+|+. +. ..+ ......+...+|-|+...|-+..+..
T Consensus 245 ~YiAAs-------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 245 KYIAAS-------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred cEEeee-------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCeeEEEeecc
Confidence 999874 45678888986 32 111 22233455678888887777765433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-06 Score=94.02 Aligned_cols=269 Identities=11% Similarity=0.095 Sum_probs=163.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
+.+...||. ...||... ...||+|+..+|+...|....... +.++.|+++|+.|++..
T Consensus 179 Y~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~------- 236 (484)
T KOG0305|consen 179 YLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT------- 236 (484)
T ss_pred hhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee-------
Confidence 566678994 34566543 568999999999999998775332 78999999999999872
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCC-C-ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~-~-~~~~~~~~SpDGk~ 345 (958)
..+.+.++|. ....+.+.. . ..+...+|. +..
T Consensus 237 ------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~ 272 (484)
T KOG0305|consen 237 ------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSV 272 (484)
T ss_pred ------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cce
Confidence 2234666665 334555555 3 778888998 332
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+...+ + .+.|..+|+.......-+ ..++...+..+.|++||+.++--
T Consensus 273 lssGs-r------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~lASG--------- 319 (484)
T KOG0305|consen 273 LSSGS-R------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQLASG--------- 319 (484)
T ss_pred EEEec-C------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCeeccC---------
Confidence 32222 2 336777777632211000 01222456789999999988762
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
+.++.+++||. ........++.+...+..++|+|=.+-|+.+...... ..|..++..++ ......+....
T Consensus 320 ----gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g--~~i~~vdtgsQ- 389 (484)
T KOG0305|consen 320 ----GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTG--ARIDSVDTGSQ- 389 (484)
T ss_pred ----CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCC--cEecccccCCc-
Confidence 55667899985 3444556778888999999999987776665432222 34555555553 22222221111
Q ss_pred ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCC
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSD 585 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~ 585 (958)
+-+ +.||+..+.|+...-. ....|-+|+..+-+......+... .+.
T Consensus 390 Vcs------L~Wsk~~kEi~sthG~-------------------s~n~i~lw~~ps~~~~~~l~gH~~----RVl----- 435 (484)
T KOG0305|consen 390 VCS------LIWSKKYKELLSTHGY-------------------SENQITLWKYPSMKLVAELLGHTS----RVL----- 435 (484)
T ss_pred eee------EEEcCCCCEEEEecCC-------------------CCCcEEEEeccccceeeeecCCcc----eeE-----
Confidence 122 7899999888877511 112466666655444333322211 122
Q ss_pred CccccccccCCEEEEEEe
Q 002164 586 QTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 586 ~~~~~~s~dg~~l~~~~~ 603 (958)
..++||||..++....
T Consensus 436 --~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 436 --YLALSPDGETIVTGAA 451 (484)
T ss_pred --EEEECCCCCEEEEecc
Confidence 2468999877765444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=94.48 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=145.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
..+.++||+|....|.... +.++++++.... +....|. ..
T Consensus 127 ~~W~~qfs~dEsl~arlv~----------------------------------nev~f~~~~~f~--~~~~kl~----~~ 166 (566)
T KOG2315|consen 127 NGWVPQFSIDESLAARLVS----------------------------------NEVQFYDLGSFK--TIQHKLS----VS 166 (566)
T ss_pred cCcccccccchhhhhhhhc----------------------------------ceEEEEecCCcc--ceeeeee----cc
Confidence 4468999999888777766 378898885422 3444553 23
Q ss_pred cccceeecCCCC--eEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+....+||-+. +||+-. ....+......||.+..+ +.-..+....- +.+.--.+.|.+-|.-|.+..
T Consensus 167 ~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~-~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLa----- 236 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEE-GQHQPVANKSF--FKADKVQMKWNKLGTALLVLA----- 236 (566)
T ss_pred ceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccc-cccchhhhccc--cccceeEEEeccCCceEEEEE-----
Confidence 577888888644 444432 101122234456655522 22222211110 011112678998887666551
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCee--eecCCCccccccccCCCCcE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV--KEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~l~~~~~~~~~~~SpDGk~ 345 (958)
+..-|...-+||+...||.++.+|+. ..|...+.+.++.|||+|+-
T Consensus 237 --------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 237 --------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred --------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11112223346688899999997643 44554488999999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+++.-.- .+..+.++|++++-+-.+-..+. ..+-|+|.|+.|++. .-|
T Consensus 285 F~VvyGf-----------MPAkvtifnlr~~~v~df~egpR---------------N~~~fnp~g~ii~lA---GFG--- 332 (566)
T KOG2315|consen 285 FAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGPR---------------NTAFFNPHGNIILLA---GFG--- 332 (566)
T ss_pred EEEEEec-----------ccceEEEEcCCCCEeEeCCCCCc---------------cceEECCCCCEEEEe---ecC---
Confidence 8887633 35689999999876554443322 357799999988873 111
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEEE
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYES 474 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~ 474 (958)
...+.+-+||+ .+ .+.|...+. +...+.|+|||++++.++
T Consensus 333 ----NL~G~mEvwDv--~n---~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 333 ----NLPGDMEVWDV--PN---RKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ----CCCCceEEEec--cc---hhhccccccCCceEEEEcCCCcEEEEEe
Confidence 23556778886 22 334433332 344579999999998765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-06 Score=80.45 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=105.1
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++++|||.|++|+..+ |+..+-||.-..++.+-+..+++.+ ..+..++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aS-------------FD~t~~Iw~k~~~efecv~~lEGHE----------nEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASAS-------------FDATVVIWKKEDGEFECVATLEGHE----------NEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEee-------------ccceEEEeecCCCceeEEeeeeccc----------cceeEEEEcCCCC
Confidence 5678999999999999887 4557888877777777776665544 4567899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.|+.- +....+|+|.+ .++.+. ..|..+..++-.+.|.|--. |+|+..+++. .++|+-..
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnT-Ik~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNT-IKVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCe-EEEEeecC
Confidence 98873 33446899986 233333 34466778888999999654 4555555543 67787665
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.+=...+..+.....+++ +.|.+.|.+|+...
T Consensus 182 -dddW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 -DDDWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred -CCCeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 3223445555665555665 77899998888776
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=98.21 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=103.6
Q ss_pred cHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HH
Q 002164 702 STSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LL 777 (958)
Q Consensus 702 ~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~a 777 (958)
..+.++|+++||.|+.++- +.-+.+...-. +.+.++.+.+|++.+.+. ...++|-++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW---~nP~~~~r~~~-ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISW---RNPDKAHREWG-LSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeC---CCCChhhcCCC-HHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHH
Confidence 3567889999999999443 22222222222 233345788999988886 34468999999999999986 67
Q ss_pred HhCCC-ceeEEEEeccCCCCCCCC-C-------------------Cccc------------ccc----------------
Q 002164 778 AHAPH-LFCCGIARSGAYNRTLTP-F-------------------GFQN------------EDR---------------- 808 (958)
Q Consensus 778 ~~~p~-~~~a~v~~~~~~~~~~~~-~-------------------~~~~------------~~~---------------- 808 (958)
++.++ +++.++..+.+.|..... . ++.. ...
T Consensus 311 A~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p 390 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEP 390 (560)
T ss_pred hcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCc
Confidence 77775 799998877765533100 0 0000 000
Q ss_pred -----hhhhcH-------------HHHHhcCccc-----------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 809 -----TLWEAT-------------STYVEMSPFM-----------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 809 -----~~~~~~-------------~~~~~~sp~~-----------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
..|.+. +.|.+..... .+.+|++|+|++.|+.|.+|| ...+.++.+.+
T Consensus 391 ~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvP--w~s~~~~~~l~- 467 (560)
T TIGR01839 391 PAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITP--WDAVYRSALLL- 467 (560)
T ss_pred chhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCC--HHHHHHHHHHc-
Confidence 011110 1121211111 356789999999999999999 88777776655
Q ss_pred hCCCcEEEEEeCCCCcc
Q 002164 860 GHGALCRLVILPFESHG 876 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~ 876 (958)
|.+++++..++ ||.
T Consensus 468 --gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 468 --GGKRRFVLSNS-GHI 481 (560)
T ss_pred --CCCeEEEecCC-Ccc
Confidence 33689999886 884
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-06 Score=83.14 Aligned_cols=197 Identities=15% Similarity=0.173 Sum_probs=119.5
Q ss_pred CcccceeecCC-CCeEEEEEeeccccCCCCCceEEEEEcCCCc---eeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 189 AKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
+.+-..+|+|- |..||... +...|.+++..++. .+.++.. ..+..+.+++|+|.|++|+..+-+
T Consensus 15 ~r~W~~awhp~~g~ilAscg---------~Dk~vriw~~~~~~s~~ck~vld~---~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCG---------TDKAVRIWSTSSGDSWTCKTVLDD---GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CcEEEEEeccCCceEEEeec---------CCceEEEEecCCCCcEEEEEeccc---cchheeeeeeecCCCcEEEEeecc
Confidence 36788999997 66555533 35677888876432 2222221 122338899999999999977221
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe--e-eecCCC-ccccccccC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT--V-KEIGPP-AVYTSLDPS 340 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~--~-~~l~~~-~~~~~~~~S 340 (958)
...-||.-. +++ . ..|..+ ..+-.++||
T Consensus 83 -----------------------------------------------~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 -----------------------------------------------ATVVIWKKE-DGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred -----------------------------------------------ceEEEeecC-CCceeEEeeeeccccceeEEEEc
Confidence 112222221 332 2 222222 567789999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++|++||.-+.+ ..+|+|.++. .+..-+..+. .+...+..+.|.|--..|+-
T Consensus 115 ~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~dlL~S---- 167 (312)
T KOG0645|consen 115 ASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTEDLLFS---- 167 (312)
T ss_pred CCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcceeEE----
Confidence 999999988854 3899999884 3333322221 11234567889985443332
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCC---ceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
.+..+.|.+|+-+ ++.. ..+|......+..+.|.+.|.+|+..+++.+ ..||+
T Consensus 168 ---------~SYDnTIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t--v~Iw~ 223 (312)
T KOG0645|consen 168 ---------CSYDNTIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT--VSIWR 223 (312)
T ss_pred ---------eccCCeEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc--eEeee
Confidence 1445566666632 1222 3445555556788999999999998877665 67887
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-08 Score=100.90 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=123.1
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+++... .+.++...++.|..... -..+++|+|++.||... . ...| ...++.|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs-------~----~~~f----~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS-------Y----VTGF----AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC-------C----ccch----hhhHHHHhhCceEEE
Confidence 345555443 36678888999876432 01146999999999421 1 1122 245778999999999
Q ss_pred EcCCCCCCCCCCccc---c-----hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002164 717 GGPTTPIIGEGDEEA---N-----DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---~-----~~~~~~~~~D~~~av~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (958)
.++..++. .|+... . ...+-....|+...+++|.+. + .+|+.+|+++|||+||+.++.++.-..
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 85554322 222211 1 112235577888999999887 4 478999999999999999999887543
Q ss_pred Cc---e-eEE----EEecc-CCCCCCCCCCcccccchhhhcHHHHHhc----------Cc-------ccccCCCCCCEEE
Q 002164 782 HL---F-CCG----IARSG-AYNRTLTPFGFQNEDRTLWEATSTYVEM----------SP-------FMSANKLKKPILL 835 (958)
Q Consensus 782 ~~---~-~a~----v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------sp-------~~~~~~~~~P~Li 835 (958)
+. . .|. ++..+ ..+.. ...+....|.....+... +| ...+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~-----~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGR-----LLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChh-----hhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 0 111 11110 00000 000011111111122111 11 1234577899999
Q ss_pred EeeCCCCCCCCChH-HHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 836 VHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 836 i~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
+.|..|...| +. +....+..|. |....+...|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999776 33 3334444443 3335677889999963
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-07 Score=89.19 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=116.7
Q ss_pred CCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC-------------Cc----
Q 002164 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-------------DE---- 729 (958)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G-------------~~---- 729 (958)
.+++|+||+.||-. ++...+..++..+|++||+|.++..||....- ..
T Consensus 115 ~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45699999999932 12233345677899999999998877754310 00
Q ss_pred ----cc-------chhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 002164 730 ----EA-------NDRFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANLL 777 (958)
Q Consensus 730 ----~~-------~~~~~~~~~~D~~~av~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~a 777 (958)
.. ..........++..|+.-|.+. +-+|.++++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 00 0111234466666776665542 136678899999999999999888
Q ss_pred HhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 778 ~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
+.+ ..|+|+|+..+- +.+. .+ ....+++-|+|+|.-+ |... .+.....++
T Consensus 260 s~~-t~FrcaI~lD~W----M~Pl-----~~---------------~~~~~arqP~~finv~-~fQ~----~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAW----MFPL-----DQ---------------LQYSQARQPTLFINVE-DFQW----NENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeee----eccc-----ch---------------hhhhhccCCeEEEEcc-cccc----hhHHHHHHh
Confidence 877 569999987641 1110 00 1223457899998844 4442 334444455
Q ss_pred HHhCCCcEEEEEeCCCCccCC-C---------------------cccHHHHHHHHHHHHHHhhccC
Q 002164 858 LKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
.......-.++.+.|.-|.-. . .+..+...+..++||++|+...
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~ 375 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLV 375 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhh
Confidence 544444456777888777421 0 1122345566789999988644
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=87.94 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEE
Q 002164 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (958)
Q Consensus 755 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~L 834 (958)
-++++||++.|.|+||.++++++..+|....+++..+++....... +...-+.. + ..|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~----------------~~~~~~~~---~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG----------------LPGWLPGV---N-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh----------------ccCCcccc---C-cchhh
Confidence 4788999999999999999999999877677777776654321110 00000000 0 58999
Q ss_pred EEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..||+.|++|| ..-+....+.|+..+.++++..|+|.+|.... +-+..+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998752 235667788776
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=79.20 Aligned_cols=191 Identities=13% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCch---------hcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
++..+.+.-+|..|.....++.+.++ .+.++..-+..+.++.+.....+++.+..+.+|++++ |+.
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk~- 86 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GKQ- 86 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----CcE-
Confidence 45667778888766655555443333 4445555667777887777777777778899999976 442
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-------CCceeeccCCCCccccccccceEEec
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
+.....+..+....||++|..++++.+.. -.....|.++++. +.++......++.. +....|+|
T Consensus 87 -la~~k~~~~Vk~~~F~~~gn~~l~~tD~~----mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk----it~a~Wg~ 157 (327)
T KOG0643|consen 87 -LATWKTNSPVKRVDFSFGGNLILASTDKQ----MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK----ITSALWGP 157 (327)
T ss_pred -EEEeecCCeeEEEeeccCCcEEEEEehhh----cCcceEEEEEEccCChhhhcccCceEEecCCccc----eeeeeecc
Confidence 32233445788889999999999987422 2234456666655 23322222222222 56788999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP- 330 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~- 330 (958)
-|+.|++.- ..+.|-.+|+ +|. ...-..
T Consensus 158 l~~~ii~Gh-------------------------------------------------e~G~is~~da~~g~~~v~s~~~ 188 (327)
T KOG0643|consen 158 LGETIIAGH-------------------------------------------------EDGSISIYDARTGKELVDSDEE 188 (327)
T ss_pred cCCEEEEec-------------------------------------------------CCCcEEEEEcccCceeeechhh
Confidence 999998760 2244778888 773 222222
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~ 376 (958)
. ..++++.+|||..+++..+.+. +-.+||..+=
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl 222 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTL 222 (327)
T ss_pred hccccccccccCCcceEEecccCc-------------cceeeeccce
Confidence 2 6788999999999888777442 5667777653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-07 Score=89.93 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|.+||..++-.+ -+...|.+|++++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS--------~gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d---- 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTAS--------FGSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD---- 259 (445)
T ss_pred ceeeEEEEcCCCCEEeecc--------cCcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc----
Confidence 4788899999999888754 24678999999999988887444333 7789999999999987321
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCCccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDGk~l 346 (958)
..-.||.-+- +.+. .+...+.+....|||+|++|
T Consensus 260 -------------------------------------------avfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 260 -------------------------------------------AVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred -------------------------------------------ceeeeehhcccceecc-eeccCCceeeeeecCCCCEE
Confidence 1112332221 3333 33333578889999999999
Q ss_pred EEEeecCC
Q 002164 347 LISSIHRP 354 (958)
Q Consensus 347 ~~~~~~~~ 354 (958)
+|+....+
T Consensus 296 Lf~~sgsp 303 (445)
T KOG2139|consen 296 LFACSGSP 303 (445)
T ss_pred EEEEcCCc
Confidence 99986654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=96.05 Aligned_cols=254 Identities=11% Similarity=0.057 Sum_probs=136.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc--eeeeccCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ--EIEIQGFPDG 188 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~--~~~lt~~~~~ 188 (958)
+....+||||++|||+.+. .++.. ..|++.++.+ +. ...+.+
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~------~~l~v~d~~t----g~~l~~~i~~---- 172 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQ------YGIRFRNLET----GNWYPELLDN---- 172 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEE------EEEEEEECCC----CCCCCccccC----
Confidence 4567899999999999763 33222 4899999854 33 223321
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC--ceeeccCCCCccccccccceEEec-CCeEEEEEecCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (958)
.. ....|++||+.|+|+.... ......+||++++.++ +.+.+....... .....|.+ |++++++.+...
T Consensus 173 ~~-~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 173 VE-PSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred cc-eEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEEEECC
Confidence 12 4589999999999987521 1123579999999988 555565533321 22233544 888887542110
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE--c-CCeeeecCCC--ccccccccC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS--L-DGTVKEIGPP--AVYTSLDPS 340 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~--~-~g~~~~l~~~--~~~~~~~~S 340 (958)
..+.+++++ + +++.+.+... .....+ .
T Consensus 245 ----------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (686)
T PRK10115 245 ----------------------------------------------TTSEVLLLDAELADAEPFVFLPRRKDHEYSL--D 276 (686)
T ss_pred ----------------------------------------------ccccEEEEECcCCCCCceEEEECCCCCEEEE--E
Confidence 123456665 3 4543333322 211122 2
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
..+..+++.++... ....|...+++ .+..+.|..... ...+..+.++ ++.|++....
T Consensus 277 ~~~~~ly~~tn~~~---------~~~~l~~~~~~~~~~~~~l~~~~~-----------~~~i~~~~~~--~~~l~~~~~~ 334 (686)
T PRK10115 277 HYQHRFYLRSNRHG---------KNFGLYRTRVRDEQQWEELIPPRE-----------NIMLEGFTLF--TDWLVVEERQ 334 (686)
T ss_pred eCCCEEEEEEcCCC---------CCceEEEecCCCcccCeEEECCCC-----------CCEEEEEEEE--CCEEEEEEEe
Confidence 33466776665421 11245555555 223333332110 0123455565 5566664322
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeee--cCCceEEEEEeccccceEEEEEcCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWC--DDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.....+++++. +++..+.|. ........+.++ +++..+++....-..-..+|.++++++
T Consensus 335 ----------~g~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 335 ----------RGLTSLRQINR---KTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred ----------CCEEEEEEEcC---CCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 33556788874 555555554 222222223344 566666665543333378999998874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-06 Score=93.38 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=155.0
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+.+|+..+ ....|.++ . +.+....|-|.+++|+... .++.|-++|+.+......+...++.
T Consensus 395 SikiWn~~t---~kciRTi~---~-~y~l~~~Fvpgd~~Iv~G~---------k~Gel~vfdlaS~~l~Eti~AHdga-- 456 (888)
T KOG0306|consen 395 SIKIWNRDT---LKCIRTIT---C-GYILASKFVPGDRYIVLGT---------KNGELQVFDLASASLVETIRAHDGA-- 456 (888)
T ss_pred cEEEEEccC---cceeEEec---c-ccEEEEEecCCCceEEEec---------cCCceEEEEeehhhhhhhhhccccc--
Confidence 788999843 13344443 2 3677788999888888844 2556777777776654444433332
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
+.+++-+||++.++..+.++.. .+|...+
T Consensus 457 --IWsi~~~pD~~g~vT~saDktV-----------------------------------------------kfWdf~l~~ 487 (888)
T KOG0306|consen 457 --IWSISLSPDNKGFVTGSADKTV-----------------------------------------------KFWDFKLVV 487 (888)
T ss_pred --eeeeeecCCCCceEEecCCcEE-----------------------------------------------EEEeEEEEe
Confidence 6788888999999877332211 1222211
Q ss_pred --CCee---------eecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCcccc
Q 002164 322 --DGTV---------KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (958)
Q Consensus 322 --~g~~---------~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~ 389 (958)
.|.. +.|--...+..+.+||||++|++.--+ +++.+|-+++=.. -.|..+.
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd-------------nTVkVyflDtlKFflsLYGHk---- 550 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD-------------NTVKVYFLDTLKFFLSLYGHK---- 550 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc-------------CeEEEEEecceeeeeeecccc----
Confidence 1211 122112567788999999999998744 3677777765322 2233221
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
..+..+..|||++.|+-- +.+..+-+|.+ .=|...+.+..++..+..+.|.|+ ..
T Consensus 551 ---------LPV~smDIS~DSklivTg-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~ 605 (888)
T KOG0306|consen 551 ---------LPVLSMDISPDSKLIVTG-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-TH 605 (888)
T ss_pred ---------cceeEEeccCCcCeEEec-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ce
Confidence 334678899999987762 23334555553 136677778888888899999995 46
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+.|++..++ .+-++|-+. -+..+..+.+...++. ++.+|+|.+++..+.
T Consensus 606 ~FFt~gKD~---kvKqWDg~k--Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 606 LFFTCGKDG---KVKQWDGEK--FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred eEEEecCcc---eEEeechhh--hhhheeeccchheeee------eEEcCCCCeEEeccC
Confidence 777776664 466666544 2344556666666665 778999998887763
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-06 Score=94.06 Aligned_cols=244 Identities=17% Similarity=0.130 Sum_probs=158.4
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.|+..+++.||..+... -.|..- ++.|+|++.||--..+.. .+..+|+. ..+-.|+.+||
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~lh-RIp~~~-----~~rp~Vll~HGLl~sS~~---Wv~n~p~~------sLaf~LadaGY 107 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTLH-RIPRGK-----KKRPVVLLQHGLLASSSS---WVLNGPEQ------SLAFLLADAGY 107 (403)
T ss_pred HcCCceEEEEEEccCCeEEEEe-eecCCC-----CCCCcEEEeecccccccc---ceecCccc------cHHHHHHHcCC
Confidence 3456789999999999955433 345441 458999999996544332 22222222 23446889999
Q ss_pred EEEEcCCCCCCCCCCcc-----------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 714 AILGGPTTPIIGEGDEE-----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~-----------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
-|-..+.|| .-|++.. ..-.+.+-..-|+-+.||++.+. ...+++..+|||.|+.....++...|+
T Consensus 108 DVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 108 DVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred ceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccch
Confidence 999977765 2343331 12223344678999999999886 345799999999999999998888765
Q ss_pred ---ceeEEEEeccCCCCCCC---------C-----------CCc------------------ccc-c-------------
Q 002164 783 ---LFCCGIARSGAYNRTLT---------P-----------FGF------------------QNE-D------------- 807 (958)
Q Consensus 783 ---~~~a~v~~~~~~~~~~~---------~-----------~~~------------------~~~-~------------- 807 (958)
+++..++.+|+...... . ++. ... .
T Consensus 185 ~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~ 264 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLV 264 (403)
T ss_pred hhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHc
Confidence 68888888875421100 0 000 000 0
Q ss_pred ---chh------------------------h-----------------hcHHHHHh-cCcccccCCCCCCEEEEeeCCCC
Q 002164 808 ---RTL------------------------W-----------------EATSTYVE-MSPFMSANKLKKPILLVHGEEDN 842 (958)
Q Consensus 808 ---~~~------------------------~-----------------~~~~~~~~-~sp~~~~~~~~~P~Lii~G~~D~ 842 (958)
... | .+...|.. ..|...+.++++|+.+.+|++|.
T Consensus 265 G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~ 344 (403)
T KOG2624|consen 265 GWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDW 344 (403)
T ss_pred CcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcc
Confidence 000 0 01112222 24566788889999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHHhh
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~--~~~~~~~~~~~~i~~fl~~~l 898 (958)
.+. ++...++...+..... ...+.+++=.|.- ......+.++..|++.+.++.
T Consensus 345 l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 345 LAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 998 8888888877776544 3333467778862 234556788889999888765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-06 Score=95.15 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=97.5
Q ss_pred EEEEEc-CCeee-ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCc
Q 002164 316 LVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIP 391 (958)
Q Consensus 316 l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p 391 (958)
+-++.. .|+.. .|+.. -.+...+++-+|+++++.+.+. .|-+.+++. ...+.+..+
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrgh------- 137 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRGH------- 137 (933)
T ss_pred EEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeeccc-------
Confidence 445555 55433 33332 4567889999999999998542 566777663 333333222
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--------ccccCceee
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------DLRYGGISW 463 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--------~~~~~~~~~ 463 (958)
...+..+.|+|.|+.|+.. ...+.|++|++ .++.....++.. ..-+..++|
T Consensus 138 ------~apVl~l~~~p~~~fLAvs-------------s~dG~v~iw~~--~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 138 ------DAPVLQLSYDPKGNFLAVS-------------SCDGKVQIWDL--QDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred ------CCceeeeeEcCCCCEEEEE-------------ecCceEEEEEc--ccchhhhhcccCCccccccccceeeeeee
Confidence 2345678999999998885 55678999996 233333333221 122456899
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+|+|..+++..-++ .+-+++..+.........+..... +.. ++|||.|++|+....
T Consensus 197 ~Pk~g~la~~~~d~----~Vkvy~r~~we~~f~Lr~~~~ss~-~~~-----~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDN----TVKVYSRKGWELQFKLRDKLSSSK-FSD-----LQWSPNGKYIAASTL 252 (933)
T ss_pred cCCCCeEEeeccCC----eEEEEccCCceeheeecccccccc-eEE-----EEEcCCCcEEeeecc
Confidence 99977777664433 255555555422222222222221 221 789999999998763
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-07 Score=94.19 Aligned_cols=231 Identities=13% Similarity=0.129 Sum_probs=144.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..+.||++|..++..+.+ ..|.+||+++ |+. +..+..+
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~~ 299 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHLD 299 (503)
T ss_pred hhhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEecC
Confidence 356788899999988887765 5789999976 432 2223344
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.......+.||+..++++. .....|..||..+|+..+-....-.. +..+.|-++|+.++.++.+
T Consensus 300 ~~~~cvkf~pd~~n~fl~G--------~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSDd---- 363 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVG--------GSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSDD---- 363 (503)
T ss_pred CCceeeecCCCCCcEEEEe--------cCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeeccC----
Confidence 4678889999998888864 24668899999998866544333322 6688899999999877221
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC--ccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~--~~~~~~~~SpDGk~l 346 (958)
..-.||.+...=..+.+... -....+..+|.|+++
T Consensus 364 -------------------------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 364 -------------------------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWF 400 (503)
T ss_pred -------------------------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCee
Confidence 11224433321122333222 223456789999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc--ccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV--RKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~--~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+-.+.+ +.|.++.+.-.- ++... ..|.++ .+....+.|||||++|+.-
T Consensus 401 ~aQs~d-------------N~i~ifs~~~~~--r~nkk-------K~feGh~vaGys~~v~fSpDG~~l~SG-------- 450 (503)
T KOG0282|consen 401 AAQSMD-------------NYIAIFSTVPPF--RLNKK-------KRFEGHSVAGYSCQVDFSPDGRTLCSG-------- 450 (503)
T ss_pred hhhccC-------------ceEEEEeccccc--ccCHh-------hhhcceeccCceeeEEEcCCCCeEEee--------
Confidence 888754 356666543110 11100 011111 1334568999999998872
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
+..+.++.||- ...+....+..++..+..+.|.|-...-+.++
T Consensus 451 -----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 451 -----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred -----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence 45677899984 23344455556677788899999865544444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=81.14 Aligned_cols=218 Identities=17% Similarity=0.129 Sum_probs=120.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+.|.|||++++..-+. ...|-++|++.++...-...++- ...+-+.+++ .....
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~~~-F~~lC-------- 154 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGNRG-FSMLC-------- 154 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSE-----EEEEEEETTE-EEEEE--------
T ss_pred cccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCE-----EEEEecCCCc-eEEEe--------
Confidence 456678999999999987554 77899999998877655444442 1122233332 11111
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeee----ecCCC---ccccccccC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVK----EIGPP---AVYTSLDPS 340 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~----~l~~~---~~~~~~~~S 340 (958)
+.+.+..+.+ +|+.. .+... ..+..+.++
T Consensus 155 ------------------------------------------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 155 ------------------------------------------GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp ------------------------------------------TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred ------------------------------------------cCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 2233444444 45322 12222 233566777
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
.++.+++|.+ +.++++-.|+.+...+.....+...........-++|..-+++.+...+|++.-..
T Consensus 193 ~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~- 258 (342)
T PF06433_consen 193 RDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ- 258 (342)
T ss_dssp TTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred CCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC-
Confidence 7888888887 45699999998776555433221110001111223455668888887777776432
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++.+.- .....+||++|+ ..++...++ ..+..+.++..|.|.+-++|....+. ..|+++|..++
T Consensus 259 -g~~gsH-KdpgteVWv~D~--~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tG 322 (342)
T PF06433_consen 259 -GGEGSH-KDPGTEVWVYDL--KTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATG 322 (342)
T ss_dssp ---TT-T-TS-EEEEEEEET--TTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT-
T ss_pred -CCCCCc-cCCceEEEEEEC--CCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCC
Confidence 222211 133457999996 233333333 33345668899999998888876543 46999998885
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00051 Score=76.27 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=100.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+++|.+.+.||....+ ++|-||++..+- -..+.+.+ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~w--~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNNW--FLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCCc--eeeEEEec-CCCC
Confidence 46788999999999988775 578899986632 34556665 3444
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|++ |.+|.-.. ..+.|--||+.+++.+......+.. +.+++-.|-++.+++..
T Consensus 71 sIE~L~W~e-~~RLFS~g---------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igc------- 129 (691)
T KOG2048|consen 71 SIESLAWAE-GGRLFSSG---------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGC------- 129 (691)
T ss_pred ceeeEEEcc-CCeEEeec---------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeec-------
Confidence 789999995 55554422 4678999999998877655444332 55666668787777651
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee--e-cCCC-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--E-IGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~--~-l~~~-~~~~~~~~SpDGk 344 (958)
..+.|+.++. .++.+ + +... +.+-+++|+|+|.
T Consensus 130 ------------------------------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 130 ------------------------------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred ------------------------------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 1123555554 33221 2 2112 6778899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
+|+..+.+ +-|.+||+.
T Consensus 168 ~i~~Gs~D-------------g~Iriwd~~ 184 (691)
T KOG2048|consen 168 KIAGGSID-------------GVIRIWDVK 184 (691)
T ss_pred EEEecccC-------------ceEEEEEcC
Confidence 99877643 356677765
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-06 Score=82.23 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=110.9
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+.-.+|.++..|--+|+.-.+.+ .|.||+.-|.. +....+...+.+|+.+||.|+.++....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~---------------rrmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA---------------RRMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT----------------GGGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh---------------HHHHHHHHHHHHHhhCCeEEEecccccc
Confidence 45568999999999998744433 78899887732 1111223567789999999999666555
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC----
Q 002164 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (958)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (958)
.|.....-.+-.......|+..+++||.+.+. .+++++-.|.-|=+|..++++- + ..-+|...|+.|...+
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 55432222333456778999999999998764 5799999999999999999855 4 6667777788763211
Q ss_pred ----CCCccccc---chhh----hcHHHHH------hc----CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 800 ----PFGFQNED---RTLW----EATSTYV------EM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 800 ----~~~~~~~~---~~~~----~~~~~~~------~~----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
....+... .... -..+.|. .+ +.+..++.+.+|++.+++.+|.-|. ..+..++...+
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~~ 221 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDNI 221 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT-
T ss_pred hccchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHhc
Confidence 00000000 0000 0001110 11 2345677788999999999999987 66666666655
Q ss_pred HhCCCcEEEEEeCCCCccCC
Q 002164 859 KGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~ 878 (958)
.. ..+++..++|..|.+.
T Consensus 222 ~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 222 NS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp TT----EEEEEETT-SS-TT
T ss_pred CC--CceeEEEecCccchhh
Confidence 44 3688889999999984
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-06 Score=96.52 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=122.1
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC-eE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TL 257 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~ 257 (958)
.+.+.+++ +.+-..+||-++ .|+-.+. ...+.+|++...+...+..+.+. +..++|.|-. ++
T Consensus 362 ~~ef~GHt--~DILDlSWSKn~-fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDry 424 (712)
T KOG0283|consen 362 FCEFKGHT--ADILDLSWSKNN-FLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRY 424 (712)
T ss_pred hhhhhccc--hhheecccccCC-eeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCc
Confidence 34455544 468889999654 6666543 45677778778788888776664 7899999855 44
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~ 335 (958)
++..+ -+ +. +-++++ +.++.-.++- ..++
T Consensus 425 FiSGS---------------------LD--------------------------~K--vRiWsI~d~~Vv~W~Dl~~lIT 455 (712)
T KOG0283|consen 425 FISGS---------------------LD--------------------------GK--VRLWSISDKKVVDWNDLRDLIT 455 (712)
T ss_pred Eeecc---------------------cc--------------------------cc--eEEeecCcCeeEeehhhhhhhe
Confidence 44331 11 22 333344 4444444433 6789
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC-Cce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP-STL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~-~l~ 414 (958)
.++++|||+..++.+ +.+...+|+..+.+...-......... +.....+.++.|.|-.. .++
T Consensus 456 Avcy~PdGk~avIGt-------------~~G~C~fY~t~~lk~~~~~~I~~~~~K----k~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGT-------------FNGYCRFYDTEGLKLVSDFHIRLHNKK----KKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred eEEeccCCceEEEEE-------------eccEEEEEEccCCeEEEeeeEeeccCc----cccCceeeeeEecCCCCCeEE
Confidence 999999999999887 345788888876554332111111100 01112456777876443 355
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecccc---CceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
++ +.+.+|.++|. ....+....++.... ....|+.||++|+.++++. .+|+++.+.
T Consensus 519 VT-------------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs----~VYiW~~~~ 577 (712)
T KOG0283|consen 519 VT-------------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS----WVYIWKNDS 577 (712)
T ss_pred Ee-------------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc----eEEEEeCCC
Confidence 53 45667888873 112221112221111 2368999999999998433 466666544
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=101.36 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=86.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC-cEEEEcCCCCC-CCCCC-
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTPI-IGEGD- 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~vl~~~~~~~-~G~G~- 728 (958)
|...+|.|+ . + ..+.|||||+|||.+..+..... .+ -...|+++| ++||.++||-. .|+=.
T Consensus 80 L~LNIwaP~-~-~--a~~~PVmV~IHGG~y~~Gs~s~~----------~y--dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE-V-P--AEKLPVMVYIHGGGYIMGSGSEP----------LY--DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC-C-C--CCCCcEEEEEeccccccCCCccc----------cc--ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 666888898 2 2 22489999999997654432111 11 134789988 88888888522 23210
Q ss_pred -ccc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 729 -EEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 729 -~~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
+.. ........+.|+..|++|+.++ ---||++|.|+|.|+||+.++.+++.. ..+|+.+|+.+|.+.
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 001 1111124588999999999986 336999999999999999998887742 246888888887654
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=90.69 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=120.0
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~a 746 (958)
+.|.++++||-. ++...|. .....|+. -|--|+. .|.+-+|.+..- .+-...+.+|+...
T Consensus 51 ~~Pp~i~lHGl~-----------GS~~Nw~----sv~k~Ls~~l~~~v~~---vd~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGLL-----------GSKENWR----SVAKNLSRKLGRDVYA---VDVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEecccc-----------cCCCCHH----HHHHHhcccccCceEE---EecccCCCCccccccCHHHHHHHHHHH
Confidence 478899999932 2222232 22334443 3445666 334455655432 22256778888888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEec--c-CCCCCCC------------CCC--------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARS--G-AYNRTLT------------PFG-------- 802 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~--~-~~~~~~~------------~~~-------- 802 (958)
++........ .++.++|||||| -+++..+...|+.+.-+|+.. | .+..... +..
T Consensus 113 i~~v~~~~~~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTRL--DPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHccccccc--CCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 8887654333 479999999999 777777778888776666543 3 1110000 000
Q ss_pred ----------------------cc---cccchhhhc-----HHHHHh---cC---cccccCCCCCCEEEEeeCCCCCCCC
Q 002164 803 ----------------------FQ---NEDRTLWEA-----TSTYVE---MS---PFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 803 ----------------------~~---~~~~~~~~~-----~~~~~~---~s---p~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
+. ......|.- .+.+.+ .+ .+.+ .....|+|+++|.++..++
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccceeEEecCCCCCcC-
Confidence 00 000001110 011111 11 1222 4456899999999999998
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.++-.++.+.+.. +++..++++||++. .++.+.+.+.+.+|+.++
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 6655555555544 79999999999984 677888999999988764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-06 Score=84.44 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=95.7
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++..|.+||-.++-.+-. +..|.+||++++...+|.... ..+...+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~g------------sssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFG------------SSSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccC------------cceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 457899999999998877633 347999999987766655211 14556789999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+... ..+....+|.. ...-...+..-..+++....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA-------------t~davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA-------------TCDAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe-------------cccceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 87663 11222334431 01111122233445788899999999999997655 46888766553
Q ss_pred CCC---------cEEEeccCCccccC-----CCCCCceEeccCCceEEEEeee
Q 002164 492 DVA---------PRILFDRSSEDVYS-----DPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 492 ~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~spdG~~l~~~~~~ 530 (958)
... ...+.|........ -.....++|.|-|.+|+...+.
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 221 11122221110000 0022347899999999988753
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=81.16 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 829 (958)
+.++..+|+++.+|+|||+||..++.++..+|+.|.+.++++|.. .|.+...+....-.... +
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl---------------Ww~n~~~l~~~~~~~~~-~- 190 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL---------------WWHNEAILREIESLKLL-K- 190 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh---------------hhCCHHHhccccccccC-C-
Confidence 334566899999999999999999999999999999999999852 24444444333322222 2
Q ss_pred CCCEEEEe--eCCCCCCCC----ChHHHHHHHHHHHh-CCCcEEEEEeCCCCccC
Q 002164 830 KKPILLVH--GEEDNNSGT----LTMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (958)
Q Consensus 830 ~~P~Lii~--G~~D~~v~~----~~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~ 877 (958)
..++.+.- |+.|..... ...++.+..+.++. .|....+..+|+++|.-
T Consensus 191 ~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 191 TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 33444444 444432110 02234445555555 77888899999888874
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-07 Score=108.99 Aligned_cols=130 Identities=19% Similarity=0.143 Sum_probs=83.7
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDE 729 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~ 729 (958)
=|...+|.|.....+. ++||+|++|||.+..+..... .......++.++++||.++||-. .|+-..
T Consensus 108 CL~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~~-----------~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSFP-----------PYDGASLAASKDVIVVTINYRLGAFGFLSL 174 (535)
T ss_dssp --EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTSG-----------GGHTHHHHHHHTSEEEEE----HHHHH-BS
T ss_pred HHHHhhhhcccccccc--ccceEEEeecccccCCCcccc-----------cccccccccCCCEEEEEecccccccccccc
Confidence 3777899998754432 599999999997655432000 11123456789999999888532 121111
Q ss_pred ccchh-hHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccC
Q 002164 730 EANDR-FVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (958)
Q Consensus 730 ~~~~~-~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (958)
..... .+...+.|...|++|++++ ---||++|-|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 01111 2456789999999999996 236999999999999999998887753 3689999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=86.92 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=139.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC-Cccc---cccccceEEecCCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP-DIYL---NAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~-~~~~---~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
.+....|||||++|+..+ . .+-|-+|+-.+|+.++-.... ...+ ...+.-+.||-|.+.++..+
T Consensus 215 h~EcA~FSPDgqyLvsgS-------v--DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--- 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS-------V--DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--- 282 (508)
T ss_pred chhheeeCCCCceEeecc-------c--cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence 466789999999998844 2 334555566677765422111 1100 01123455666666666431
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCC-C-ccccccccCCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGP-P-AVYTSLDPSPD 342 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~-~-~~~~~~~~SpD 342 (958)
.| +.-.+|++. +|. .+++.. . .++....||.|
T Consensus 283 -------------------------------------qD-------GkIKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 283 -------------------------------------QD-------GKIKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred -------------------------------------cC-------CcEEEEEEe-cchHHHHhhhhhccCeeEEEEccC
Confidence 11 223344444 663 444432 2 77899999999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
+..|+..+. +..+.+.-+..++ .+.. .++...+....|++||..|+-.
T Consensus 318 ~SqiLS~sf-------------D~tvRiHGlKSGK~LKEf-------------rGHsSyvn~a~ft~dG~~iisa----- 366 (508)
T KOG0275|consen 318 NSQILSASF-------------DQTVRIHGLKSGKCLKEF-------------RGHSSYVNEATFTDDGHHIISA----- 366 (508)
T ss_pred cchhhcccc-------------cceEEEeccccchhHHHh-------------cCccccccceEEcCCCCeEEEe-----
Confidence 999987763 4477777776432 2222 2233455678899999988763
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
+.++.+-+|+. ..+...... ...+..+.++..-|..-.-....|+. +.+|++++.+. ....+
T Consensus 367 --------SsDgtvkvW~~--KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQ---vVrsf 430 (508)
T KOG0275|consen 367 --------SSDGTVKVWHG--KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQ---VVRSF 430 (508)
T ss_pred --------cCCccEEEecC--cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccce---EEeee
Confidence 44566777874 222222222 22345566666666654333334443 46999998872 12212
Q ss_pred -ccCC--ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 500 -DRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 500 -~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
...- ++... ...||.|+|++....+ ..||-+...+|+.++..
T Consensus 431 sSGkREgGdFi~------~~lSpkGewiYcigED---------------------~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 431 SSGKREGGDFIN------AILSPKGEWIYCIGED---------------------GVLYCFSVLSGKLERTL 475 (508)
T ss_pred ccCCccCCceEE------EEecCCCcEEEEEccC---------------------cEEEEEEeecCceeeee
Confidence 1111 11111 3479999998887632 14777787778776543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0001 Score=83.40 Aligned_cols=369 Identities=13% Similarity=0.093 Sum_probs=185.5
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
+..+.+++|.-||..+..++.. . +.+.+||++. .+..-++.-.+
T Consensus 244 ~g~VtslSFrtDG~p~las~~~----------------------~----------G~m~~wDLe~----kkl~~v~~nah 287 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRS----------------------N----------GDMAFWDLEK----KKLINVTRNAH 287 (910)
T ss_pred ccceeEEEeccCCCeeEEeccC----------------------C----------ceEEEEEcCC----Ceeeeeeeccc
Confidence 4567788888888887766652 1 3688999943 22222221112
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe-cCCeEEEEEecCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLR 266 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~ 266 (958)
.+.+....+-| |+-|+++.. .+....+|+.|...|.+|.|-...+- .+....+++- ..|..|.....+..
T Consensus 288 ~~sv~~~~fl~-~epVl~ta~------~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 288 YGSVTGATFLP-GEPVLVTAG------ADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred cCCcccceecC-CCceEeecc------CCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcc
Confidence 23566677776 788888764 34577899999777777777543221 1112344454 45555554421110
Q ss_pred CCC------------CC----CCCCCCCCceeeecCCcccccchhhhhc-cCchh----hhHHHHhhcceEEEEEc-C--
Q 002164 267 GDP------------PK----KPLVPLGPKMQSNEKRDIIQVRTFQDLL-KDEYD----EDLFDYYATTQLVLVSL-D-- 322 (958)
Q Consensus 267 ~~~------------~~----~~~~~~~~~~~~~~~~~~~~~r~~~d~~-~~~~~----~~~~~~~~~~~l~~~~~-~-- 322 (958)
-.. .. +...+.+ ..+.+..+.-++- .+. .+.+. .....+.+..+++.++. +
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~--~~~~~~~k~p~i~---~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVN--VFSTEKLKLPPIV---EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred hhhhhhhHHHHhHhhccccccccccccc--ccchhhhcCCcce---eeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 000 00 0000000 0000000000000 000 00000 01111124556666666 3
Q ss_pred -CeeeecCC----C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc-CCccccCccccc
Q 002164 323 -GTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIPIAFN 395 (958)
Q Consensus 323 -g~~~~l~~----~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~-~~~~~~~p~~~~ 395 (958)
|+-..-+. . .....++.|+-|+..+.... .+.|.+++++.+-.+.-.. .+...
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S-------------~G~Id~fNmQSGi~r~sf~~~~ah~------- 493 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS-------------KGTIDRFNMQSGIHRKSFGDSPAHK------- 493 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEecc-------------CCeEEEEEcccCeeecccccCcccc-------
Confidence 22222222 2 45678889999988776653 2489999999776543221 11111
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEE
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~ 473 (958)
..+.++ +-||..-... ..+..+.+-.|+. .++. .+.. .......+.++.....++..
T Consensus 494 ---~~V~gl--a~D~~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 494 ---GEVTGL--AVDGTNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred ---CceeEE--EecCCCceEE-----------EccCcceEEEEec---CCcc--eeeeeccCCCcceeeeeehhhhhhhh
Confidence 122333 3343321111 1244566777774 3332 1211 11122334444444444333
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
.. + ..|.++|..+. +....+......+.. +.|||||+||+...++. .
T Consensus 553 ~d-d---f~I~vvD~~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------t 599 (910)
T KOG1539|consen 553 LD-D---FSIRVVDVVTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------T 599 (910)
T ss_pred cC-c---eeEEEEEchhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------c
Confidence 22 1 45777776652 222233333333333 78999999999988542 5
Q ss_pred EEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002164 554 LDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d 615 (958)
|.+||+-++...-...-+.. ++ ..+|||+|+.|+.+..+.. .||+|.
T Consensus 600 Ir~wDlpt~~lID~~~vd~~-----~~-------sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSP-----CT-------SLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred EEEEeccCcceeeeEecCCc-----ce-------eeEECCCCCEEEEEEecCc---eEEEEE
Confidence 99999998876544333322 12 3579999999998887533 577774
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-05 Score=78.79 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=78.5
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
..+.+...+|..+...-.+-+... ...+..+||-+||.| |+.+.|. .....|.+.|+.++..+
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~~--~gs~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN 69 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSLP--SGSPLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGIN 69 (297)
T ss_pred EEEEcccccCceEEEEEEEEecCC--CCCCceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeC
Confidence 345555666655444333322211 123467999999987 4445553 33457888999999955
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+ +|.|....+.+... .-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++...| ..++++++|+
T Consensus 70 ~---PGf~~t~~~~~~~~-~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 70 Y---PGFGFTPGYPDQQY-TNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C---CCCCCCCCCccccc-ChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 45555544322111 1111223334444443354 79999999999999999999985 4577777764
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-06 Score=80.17 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=67.9
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEe
Q 002164 759 SKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (958)
+.+.++|||.|+.+++.++ .....+++++++++|+..... ..... .+....+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~----------~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPP----------ELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTC----------GGCCCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhh----------hccccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667789999999999743100 00000 00011111 1112346779999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+++|+.|| +..+.++.+++. .+++.++++||...
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred cCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 99999999 999999999885 48999999999763
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=80.91 Aligned_cols=363 Identities=13% Similarity=0.108 Sum_probs=202.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhccccc--------ceeeceeecCC-----CCCccceeeEeceeEEEccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPE--------EKLAGLRIDGK-----CNTRSRMSFYTGIGIHQLFPDGKL 176 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~dg~~ 176 (958)
.+.++.|++|+..+++++++..-.++++-.-+ ..+.+..+-.+ +....+.+..+.+.+|+.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 57889999999999999887443344332111 11122222112 11222334445667776643 211
Q ss_pred CceeeeccCCCCCcc-cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCCccccccccceE-Eec
Q 002164 177 GQEIEIQGFPDGAKL-NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFV-WVN 253 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~-~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~-wsp 253 (958)
...++. +++..+ ......-+++.++.+. ..+|+++|.+..+..+ +....+. +.++. |-|
T Consensus 273 ~~~~~~---~~~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~ 334 (775)
T KOG0319|consen 273 VYKQRQ---SDSEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGP 334 (775)
T ss_pred hhhhcc---CCchhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCC
Confidence 111111 111112 2223344566666654 6689999888776543 3322222 44555 558
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~- 331 (958)
+.+.|++++ +...|-++++ +-....+..+
T Consensus 335 e~~~laVAT-------------------------------------------------Ns~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 335 EESHLAVAT-------------------------------------------------NSPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred ccceEEEEe-------------------------------------------------CCCceEEEecCCCceEEEeCch
Confidence 889999872 1234556677 4445544444
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+.+.+...+|-+|+..+. ++.+.+|.++.+..+.+.... .+++...+..++.+..|.
T Consensus 366 e~vlSL~~~~~g~llat~sK-------------D~svilWr~~~~~~~~~~~a~--------~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSK-------------DKSVILWRLNNNCSKSLCVAQ--------ANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred hheeeeeecccCcEEEEecC-------------CceEEEEEecCCcchhhhhhh--------hcccccccceeeecccCc
Confidence 55666664457756665553 347889988544333222110 112223445677766666
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCC--CCCCceEE------EeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
.++.. ++.+..+-+|++ +. +...+..+ ..++-+++.++.+|+.+.|+..+.+++ ..|
T Consensus 425 sffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt--aKi 489 (775)
T KOG0319|consen 425 SFFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT--AKI 489 (775)
T ss_pred cEEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc--eee
Confidence 55553 244556667765 11 11111222 135667889999999998888877766 789
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
|.++ + .....+...+...++. ++|+|..+.++..+.+ ..+.+|.+++..
T Consensus 490 W~le-~---~~l~~vLsGH~RGvw~------V~Fs~~dq~laT~SgD---------------------~TvKIW~is~fS 538 (775)
T KOG0319|consen 490 WDLE-Q---LRLLGVLSGHTRGVWC------VSFSKNDQLLATCSGD---------------------KTVKIWSISTFS 538 (775)
T ss_pred eccc-C---ceEEEEeeCCccceEE------EEeccccceeEeccCC---------------------ceEEEEEeccce
Confidence 9887 2 2334455666666666 8999998877765421 259999999888
Q ss_pred eEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 564 KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
..+-+++... ..+ ..+|-.+|+.++-..+ ..-+-+|+..+++..
T Consensus 539 ClkT~eGH~~------aVl-----ra~F~~~~~qliS~~a----dGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 539 CLKTFEGHTS------AVL-----RASFIRNGKQLISAGA----DGLIKLWNIKTNECE 582 (775)
T ss_pred eeeeecCccc------eeE-----eeeeeeCCcEEEeccC----CCcEEEEeccchhhh
Confidence 7766665432 111 2456666766654333 234677777666543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-05 Score=78.21 Aligned_cols=263 Identities=16% Similarity=0.093 Sum_probs=144.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......||+-|.+||..- .++.|.+||..+-..-++....-.. +.+++||+||+.|+.++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS------- 84 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSS------- 84 (405)
T ss_pred ccceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeec-------
Confidence 356789999999999954 3667888888775444433322222 77999999999999762
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~ 347 (958)
....+-.+|+ .|. .+++.-+..+....|.|-.+..+
T Consensus 85 ------------------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 85 ------------------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred ------------------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 1123566777 663 33443335677788888555444
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
+...-+ ..-++.++.....+.|...+..+. + ...+...|.+-|++|+.-
T Consensus 123 va~~~~------------~sp~vi~~s~~~h~~Lp~d~d~dl-----n---~sas~~~fdr~g~yIitG----------- 171 (405)
T KOG1273|consen 123 VATIME------------ESPVVIDFSDPKHSVLPKDDDGDL-----N---SSASHGVFDRRGKYIITG----------- 171 (405)
T ss_pred EEEEec------------CCcEEEEecCCceeeccCCCcccc-----c---cccccccccCCCCEEEEe-----------
Confidence 433111 123345554444444433221110 0 001122477888887762
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc-C--CCCCCCcEEEeccCCc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDRSSE 504 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~ 504 (958)
...+.+.+++++.++=-..-+++. -..+..+.++-.|+.|++.+.+.- .+.|-+. + .+.++++... ....
T Consensus 172 --tsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~K~q 244 (405)
T KOG1273|consen 172 --TSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--HKLQ 244 (405)
T ss_pred --cCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--HHHH
Confidence 345667778752221000111111 234667889999999988764432 4555433 1 1111121110 0001
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
++-....=....||.||.+++.+.. ..-.||+|....|...++..+..
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1100000001568999999877652 11259999999999988877664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=90.45 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=90.4
Q ss_pred eEEEEEcCCeeeecCCCccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccc
Q 002164 315 QLVLVSLDGTVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~ 393 (958)
.||.+.-..-+..+.....++.++|.| |.++++-.+ .++++.||.+...++..-++..
T Consensus 393 RLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS-------------LD~KvRiWsI~d~~Vv~W~Dl~-------- 451 (712)
T KOG0283|consen 393 RLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS-------------LDGKVRLWSISDKKVVDWNDLR-------- 451 (712)
T ss_pred EeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc-------------cccceEEeecCcCeeEeehhhh--------
Confidence 344433222334444447889999999 666665544 3569999999876654444332
Q ss_pred ccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce---EEEe------eccccCceeee
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHK------LDLRYGGISWC 464 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l~~------~~~~~~~~~~s 464 (958)
.-+..+.|+|||+..++- ...+..++|+. .+-+.. .+.. ...++.++.|.
T Consensus 452 -----~lITAvcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 452 -----DLITAVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred -----hhheeEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 345789999999988773 23344555553 222211 1110 12256777777
Q ss_pred cC-CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 465 DD-SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 465 pD-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|- ...|+.++++ ++|.++|.... +....+...... .....-+|+.||++|+.+.
T Consensus 511 p~~~~~vLVTSnD----SrIRI~d~~~~--~lv~KfKG~~n~----~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 511 PGDPDEVLVTSND----SRIRIYDGRDK--DLVHKFKGFRNT----SSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CCCCCeEEEecCC----CceEEEeccch--hhhhhhcccccC----CcceeeeEccCCCEEEEee
Confidence 64 3356666554 45666775332 222222211110 0111256899999999987
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=81.20 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=127.7
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
..++..||..+.+..|.-++ +.+-.+++-|++. ....++..+++..+++||.|++ +
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-------~~~g~~~va~a~G--------------v~~~fYRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-------KASGRLVVAGATG--------------VGQYFYRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccccCCC-------CCCCcEEecccCC--------------cchhHhHHHHHHhhccCceEEE---E
Confidence 56788899999999884333 1332233333220 0111233556667789999999 5
Q ss_pred CCCCCCCccc------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe-ccC-
Q 002164 722 PIIGEGDEEA------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR-SGA- 793 (958)
Q Consensus 722 ~~~G~G~~~~------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~~~- 793 (958)
+++|.|++.. ...+.+....|+.++++++.+...- .....+|||+||.+...+ .+++ ++.+.... ++.
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~--~P~y~vgHS~GGqa~gL~-~~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPG--HPLYFVGHSFGGQALGLL-GQHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCC--CceEEeeccccceeeccc-ccCc-ccceeeEeccccc
Confidence 5566666633 1345566789999999999885322 368899999999875544 4443 33333222 211
Q ss_pred CC----------------CCCCCCCccc---------cc----chhhhcHHHHHhc------Ccc-----cccCCCCCCE
Q 002164 794 YN----------------RTLTPFGFQN---------ED----RTLWEATSTYVEM------SPF-----MSANKLKKPI 833 (958)
Q Consensus 794 ~~----------------~~~~~~~~~~---------~~----~~~~~~~~~~~~~------sp~-----~~~~~~~~P~ 833 (958)
.+ ....+..+.. .. .....+-..|-++ +|. +..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 00 0000000000 00 0000000111111 121 2235678999
Q ss_pred EEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 002164 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~----~H~~~~~~~~~~~~~~i~~fl 894 (958)
+.+...+|+.+| +.....+....+.+ +.+...++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 77777777777665 6777777754 887544444466777888886
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-06 Score=85.26 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=115.0
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.++.+.+......++|++||..|+....+ +.+.||+.... ..
T Consensus 137 v~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~t 178 (398)
T KOG0771|consen 137 VYQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----LT 178 (398)
T ss_pred HhHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----hh
Confidence 34444444344678889999888877654 46788876431 12
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc-eeeccCCCCccccccccceEEecCC---e
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS---T 256 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG---~ 256 (958)
.+....+.+.+....|||||+.|+++.. ....+|++++|. ..++++.... ..+..++|+-|+ .
T Consensus 179 ~l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~---~~~~~cRF~~d~~~~~ 245 (398)
T KOG0771|consen 179 ILEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKD---EMFSSCRFSVDNAQET 245 (398)
T ss_pred hhhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccc---hhhhhceecccCCCce
Confidence 2221223457899999999999999752 266677777763 3445533332 237789999776 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC----eeeecCCC
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGPP 331 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g----~~~~l~~~ 331 (958)
+..++..... +.-.++.+.+ .+ ..++....
T Consensus 246 l~laa~~~~~---------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 246 LRLAASQFPG---------------------------------------------GGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEEEEecCCC---------------------------------------------CceeEEEeeeeccccccchhhhhhc
Confidence 3333311100 0111233333 33 33333333
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+++++.|+|||+++..+++ +.+-+++...= +.+...+.. +..-+..+.|+||.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~d-------------GsVai~~~~~l--q~~~~vk~a---------H~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMD-------------GSVAIYDAKSL--QRLQYVKEA---------HLGFVTGLTFSPDS 336 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccC-------------CcEEEEEecee--eeeEeehhh---------heeeeeeEEEcCCc
Confidence 578899999999999999864 36777776532 222221111 11345789999998
Q ss_pred CCceE
Q 002164 411 PSTLY 415 (958)
Q Consensus 411 ~~l~~ 415 (958)
+.++-
T Consensus 337 r~~~s 341 (398)
T KOG0771|consen 337 RYLAS 341 (398)
T ss_pred Ccccc
Confidence 87664
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=93.56 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred HHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc--HHHHHHHHHHH
Q 002164 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRW 893 (958)
Q Consensus 817 ~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~--~~~~~~~i~~f 893 (958)
+...++...+.++. +|+|++||.+|..|| ..++..++.+.+.. +.+..++++++|....... .......+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 45556666777777 699999999999999 99999999998875 6788899999999864232 34788899999
Q ss_pred HHHhh
Q 002164 894 LQKYC 898 (958)
Q Consensus 894 l~~~l 898 (958)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=83.55 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=48.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
..+...+|+||+..+.+.+ ....+++||+..|............ +..++|.|-+++|+..+
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASKS 184 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhhc
Confidence 4789999999999999955 3678899999988876665444432 67899999999998663
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00025 Score=74.31 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=84.8
Q ss_pred cceEEEEEc-CCeeeecCCCccccccccC-CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~S-pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
..+|++++. +++.+.+..+. .....+. +||+ |++.... .+.++|.++++.+.+...+... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG--------------GIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT--------------CEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC--------------ceEEEecCCCcEEEEeeccCCC-c
Confidence 357999999 66665544433 4455566 6655 4444422 5667788888877776642111 0
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceE
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (958)
+ ...+..+.++|||+ +++. +........ ...+.+|+++. + ++.+.+...-.....++|+|||+.|
T Consensus 84 ~------~~~~ND~~vd~~G~-ly~t-~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 P------FNRPNDVAVDPDGN-LYVT-DSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp C------TEEEEEEEE-TTS--EEEE-EECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred c------cCCCceEEEcCCCC-EEEE-ecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 1 13456789999998 5443 332111110 11167999984 4 4555555444455689999999998
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++..... .+||+++++..
T Consensus 149 yv~ds~~---~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDAD 166 (246)
T ss_dssp EEEETTT---TEEEEEEEETT
T ss_pred eeccccc---ceeEEEecccc
Confidence 8764333 46888888653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-06 Score=88.50 Aligned_cols=108 Identities=11% Similarity=-0.094 Sum_probs=72.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (958)
.|++|++||.... ....+.......++ ..+|.|+++|..+. +..... ........+++...
T Consensus 36 ~p~vilIHG~~~~-------------~~~~~~~~l~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSS-------------GEESWISDLRKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCC-------------CCCcHHHHHHHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHH
Confidence 5889999995311 10111122233344 46899999665432 211111 11123345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.++|.++|||+||.+|..++.+.|++++.++...|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88888775567789999999999999999999999899999998875
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.8e-06 Score=81.20 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHc--CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEec---cCCCCCCCCCCccc------
Q 002164 740 VACAEAAVEEVVRR--GVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARS---GAYNRTLTPFGFQN------ 805 (958)
Q Consensus 740 ~~D~~~av~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~---~~~~~~~~~~~~~~------ 805 (958)
..|+...++.+... +..-....+++||||||.+|..+|.+.. -...+....+ |.++.........+
T Consensus 53 ~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~ 132 (244)
T COG3208 53 LTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLAD 132 (244)
T ss_pred cccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHH
Confidence 34444555555443 1122247999999999999999987531 1133333332 22221100000000
Q ss_pred ------ccchhhhcHHHHHhcCc-----------ccc--cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 806 ------EDRTLWEATSTYVEMSP-----------FMS--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 806 ------~~~~~~~~~~~~~~~sp-----------~~~--~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
.....+++++...-.-| +.+ -..+.+|+.++.|++|..|. .++...+.+..+ ...+
T Consensus 133 l~~lgG~p~e~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t~---~~f~ 207 (244)
T COG3208 133 LVDLGGTPPELLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVS--RDELGAWREHTK---GDFT 207 (244)
T ss_pred HHHhCCCChHHhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhcc--HHHHHHHHHhhc---CCce
Confidence 00122344332221111 111 13567999999999999987 555555555443 4589
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 867 LVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 867 ~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.+|+| ||.+. ..+. +++++++.+++
T Consensus 208 l~~fdG-gHFfl-~~~~----~~v~~~i~~~l 233 (244)
T COG3208 208 LRVFDG-GHFFL-NQQR----EEVLARLEQHL 233 (244)
T ss_pred EEEecC-cceeh-hhhH----HHHHHHHHHHh
Confidence 999998 99985 2333 34455555554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-06 Score=85.32 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=151.9
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
.-+.|.+-++. .++...||+||.+++....+ +-|.+|+..- .
T Consensus 129 nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~g---------------------------------G~iKyWqpnm----n 170 (464)
T KOG0284|consen 129 NFETILQAHDS-PVRTMKWSHNGTWMISGDKG---------------------------------GMIKYWQPNM----N 170 (464)
T ss_pred eHHHHhhhhcc-cceeEEEccCCCEEEEcCCC---------------------------------ceEEecccch----h
Confidence 33556677776 68899999999999876654 3466676532 2
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccCCCCccccccccceEEecCCe
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
..+.+... +...+...+|||.....+.+++ .+.|-+||..- .+++.|.. ++.. +.++.|.|.-.
T Consensus 171 nVk~~~ah-h~eaIRdlafSpnDskF~t~Sd---------Dg~ikiWdf~~~kee~vL~G-Hgwd----VksvdWHP~kg 235 (464)
T KOG0284|consen 171 NVKIIQAH-HAEAIRDLAFSPNDSKFLTCSD---------DGTIKIWDFRMPKEERVLRG-HGWD----VKSVDWHPTKG 235 (464)
T ss_pred hhHHhhHh-hhhhhheeccCCCCceeEEecC---------CCeEEEEeccCCchhheecc-CCCC----cceeccCCccc
Confidence 33333221 1236889999997777776653 55677777554 34455533 3322 77999999988
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-cc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AV 333 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~ 333 (958)
.|+.... ..-+-++|. +|. +-.+... .-
T Consensus 236 Liasgsk-------------------------------------------------DnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 236 LIASGSK-------------------------------------------------DNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred eeEEccC-------------------------------------------------CceeEeecCCCcchhhhhhhccce
Confidence 8886521 112334455 552 3333333 56
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..+.|+|+|.+|+..+.+ ..+.++|+.. .+.|.... +....+..+.|+|=-..|
T Consensus 267 Vl~~~f~~n~N~Llt~skD-------------~~~kv~DiR~--mkEl~~~r----------~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKD-------------QSCKVFDIRT--MKELFTYR----------GHKKDVTSLTWHPLNESL 321 (464)
T ss_pred EEEEEEcCCCCeeEEccCC-------------ceEEEEehhH--hHHHHHhh----------cchhhheeeccccccccc
Confidence 7889999999999988743 3788888872 11221111 222456788999977776
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-E-EeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+.. .+..+.|+.+.+ ...++.. + ..++..+.+++|.|=|..|+..+++.+ .+.|.-.
T Consensus 322 fts------------gg~Dgsvvh~~v---~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t--~rfw~r~ 380 (464)
T KOG0284|consen 322 FTS------------GGSDGSVVHWVV---GLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT--VRFWTRN 380 (464)
T ss_pred eee------------ccCCCceEEEec---cccccccCCCcccccceeeeeccccceeEeecCCCcc--eeeeccC
Confidence 653 123445655554 2222221 2 345677889999999988877665554 5566433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.5e-05 Score=77.47 Aligned_cols=213 Identities=19% Similarity=0.103 Sum_probs=121.7
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeec-CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~- 241 (958)
.|+.++..+ +....+. .+ . .....+. +|| .|+++. ...+.++|.++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LP--G-PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SS--S-EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cC--C-CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 677777633 3333332 22 2 3444555 665 455543 345566699998887776542111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
-......+++.|||+ |+++....... ... ....||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 112256889999998 66652211110 000 1156999998
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--Cce---EEEeccCCccccCccccc
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF---VRELCDLPLAEDIPIAFN 395 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~---~~~l~~~~~~~~~p~~~~ 395 (958)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ +.. .+.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 7776666555 556788999999999887633 3479999886 331 22232222111
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee-cCCceEEEEE
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYES 474 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~ 474 (958)
..+.++.+..+|+ |++ +. ...+.|++++. +|.....+.........++|. +|.+.|+.++
T Consensus 184 ---g~pDG~~vD~~G~-l~v-a~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN-LWV-AD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS--EEE-EE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC-EEE-EE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1246788999986 332 11 23567899984 555555554443466778884 7777777664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=81.52 Aligned_cols=228 Identities=15% Similarity=0.154 Sum_probs=140.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~~~lt~~~~~~ 241 (958)
..|++||..+ |+. ++-|.++++ .+...+++.-|+.|+.++. ...+.+|+.++- +..+.-..++.
T Consensus 130 ~tikv~D~~t-g~~--e~~LrGHt~--sv~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h- 194 (406)
T KOG0295|consen 130 ATIKVFDTET-GEL--ERSLRGHTD--SVFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEH- 194 (406)
T ss_pred ceEEEEEccc-hhh--hhhhhcccc--ceeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCccc-
Confidence 4799999854 433 566777663 4889999999999998763 223566665541 22222222222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
.+..+.+-|-|..|+... ....|...+.
T Consensus 195 ---~vS~V~f~P~gd~ilS~s-------------------------------------------------rD~tik~We~ 222 (406)
T KOG0295|consen 195 ---GVSSVFFLPLGDHILSCS-------------------------------------------------RDNTIKAWEC 222 (406)
T ss_pred ---ceeeEEEEecCCeeeecc-------------------------------------------------cccceeEEec
Confidence 277888999998888551 1123455555
Q ss_pred -CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCccccccc
Q 002164 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 -~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~ 397 (958)
+| ....+... ..+..+..+-||..++.-+++ +.+.+|-+.++..+.+ ..+.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE------------ 277 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE------------ 277 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc------------
Confidence 66 45555555 778888999999888776643 4899999887643332 2221
Q ss_pred ccCcceeeeecCCCCceEE--EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 398 RKGMRSINWRSDKPSTLYW--AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.-+.-++|.|+..+--.. +...+++......+.+..|-+|++ ..|.-.-.|..++..+++++|+|-|++|+...+
T Consensus 278 -h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 278 -HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred -cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 112345566654321111 001111112222234456788886 345555666777888999999999999998877
Q ss_pred ccccceEEEEEc
Q 002164 476 YKTRRTRTWVIS 487 (958)
Q Consensus 476 ~~~~~~~l~~~~ 487 (958)
+++ .++|.+.
T Consensus 355 Dkt--lrvwdl~ 364 (406)
T KOG0295|consen 355 DKT--LRVWDLK 364 (406)
T ss_pred CCc--EEEEEec
Confidence 766 5666654
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=76.15 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred CCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 697 ~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
|.......+..|+++|+.|+.+|- .-| +.....-++...|+.+.+++..++- ..+++.|+|.|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvds---l~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDS---LRY---FWSERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEech---HHH---HhhhCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHH
Confidence 444456778899999999998433 222 1222333577889999999988873 34699999999999888888
Q ss_pred HHhCCC----ceeEEEEeccCCCCCC--CCCCcccccchhhhcHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChH
Q 002164 777 LAHAPH----LFCCGIARSGAYNRTL--TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~ 849 (958)
..+-|+ +++.+++.++.....+ ...++.... ... ..+.+...++++. .|++.|+|++|.-..|+
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~-----~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp-- 156 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMG-----GDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCP-- 156 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCC-----CCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCc--
Confidence 777663 6788888776432111 100110000 000 0123444455565 49999999887654422
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.++. ..++.+..|| ||.|. .+...+.+.|++-++
T Consensus 157 -------~l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 157 -------SLRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred -------cccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 1222 3568888998 77773 444556666666554
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=83.83 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=138.9
Q ss_pred ccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-ec
Q 002164 156 RSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PL 234 (958)
Q Consensus 156 ~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~l 234 (958)
..+++.+..|.+|++.... ......|.+ ..+.+....+-+|+++++-... ..++.+|+++....+ .|
T Consensus 190 latgg~Dr~Ik~W~v~~~k-~~~~~tLaG--s~g~it~~d~d~~~~~~iAas~---------d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEK-SELISTLAG--SLGNITSIDFDSDNKHVIAASN---------DKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred hhhcchhhhhhhhhcccch-hhhhhhhhc--cCCCcceeeecCCCceEEeecC---------CCceeeeeccchhhhhhh
Confidence 3334444578889884411 111222322 2347889999999999887542 456677777665543 33
Q ss_pred cCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 235 FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 235 t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
+. ..+. +....+.-....++....+... +.+.....-.. +.+.....-.|..-...+ .++-....
T Consensus 258 sG-Htdk----Vt~ak~~~~~~~vVsgs~DRti---K~WDl~k~~C~-----kt~l~~S~cnDI~~~~~~--~~SgH~Dk 322 (459)
T KOG0288|consen 258 SG-HTDK----VTAAKFKLSHSRVVSGSADRTI---KLWDLQKAYCS-----KTVLPGSQCNDIVCSISD--VISGHFDK 322 (459)
T ss_pred cc-cccc----eeeehhhccccceeeccccchh---hhhhhhhhhee-----ccccccccccceEeccee--eeeccccc
Confidence 33 3222 4455555444333332221111 11111000000 000000000000000000 00000123
Q ss_pred eEEEEEc-CCeeee-cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 315 QLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 315 ~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
.|-.+|. ++..+. +..++.++++..|+||..|...+.+ ..+.++|+.+.+.+....-+...
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD-------------dtl~viDlRt~eI~~~~sA~g~k---- 385 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD-------------DTLKVIDLRTKEIRQTFSAEGFK---- 385 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC-------------CceeeeecccccEEEEeeccccc----
Confidence 3666665 554333 3333788999999999999877532 37889999988877655433221
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-EEee--ccccCceeeecCCce
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKL--DLRYGGISWCDDSLA 469 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~--~~~~~~~~~spDg~~ 469 (958)
.+ .....+.|||||.+++.- +..+.||+|++ .+++... +... +..+..++|+|-|+.
T Consensus 386 --~a--sDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 386 --CA--SDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred --cc--cccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 01 123568899999988762 55778999996 4555444 4222 224788999999999
Q ss_pred EEEEEeccccceEEE
Q 002164 470 LVYESWYKTRRTRTW 484 (958)
Q Consensus 470 l~~~~~~~~~~~~l~ 484 (958)
|+....... ..||
T Consensus 446 Llsadk~~~--v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKA--VTLW 458 (459)
T ss_pred hhcccCCcc--eEec
Confidence 887754332 4455
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-05 Score=84.00 Aligned_cols=245 Identities=13% Similarity=0.016 Sum_probs=143.2
Q ss_pred ChhHHHhh-cCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 99 PPEIREIV-DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
|....+.+ ....++..-++|||+.|+..... .+|-|||+...
T Consensus 455 PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAap---- 497 (705)
T KOG0639|consen 455 PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAAP---- 497 (705)
T ss_pred ccccccccCcccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccCC----
Confidence 33333444 34467788899999999875532 47889999541
Q ss_pred ceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe
Q 002164 178 QEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 178 ~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
..+.-..++..+ .....+.|||.+ |+|..- ...+|.+||+......+-..+...+ +..+..|+||.
T Consensus 498 TprikaeltssapaCyALa~spDak-vcFscc--------sdGnI~vwDLhnq~~VrqfqGhtDG----ascIdis~dGt 564 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAISPDAK-VCFSCC--------SDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISKDGT 564 (705)
T ss_pred CcchhhhcCCcchhhhhhhcCCccc-eeeeec--------cCCcEEEEEcccceeeecccCCCCC----ceeEEecCCCc
Confidence 111111233222 677788999986 666542 2457888888765544333333222 67888999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVY 334 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~ 334 (958)
.|+.... ...+.-+|+ +|..-+-.+. ..+
T Consensus 565 klWTGGl-------------------------------------------------DntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 565 KLWTGGL-------------------------------------------------DNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred eeecCCC-------------------------------------------------ccceeehhhhhhhhhhhhhhhhhh
Confidence 9985410 122444555 5522111122 567
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.+...+|.|.||++.... +++++....+.+..+|..+. .-+-++.|++=|++.+
T Consensus 596 fSLg~cP~~dWlavGMen-------------s~vevlh~skp~kyqlhlhe-------------ScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMEN-------------SNVEVLHTSKPEKYQLHLHE-------------SCVLSLKFAYCGKWFV 649 (705)
T ss_pred eecccCCCccceeeeccc-------------CcEEEEecCCccceeecccc-------------cEEEEEEecccCceee
Confidence 788899999999998743 37777777766666665543 2345788999999766
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
-+ +.++-+-.|.. --|...-+. +....+.....|-|.++|+..+.++- ..+|.+
T Consensus 650 St-------------GkDnlLnawrt--PyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkk--ATVYeV 703 (705)
T KOG0639|consen 650 ST-------------GKDNLLNAWRT--PYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKK--ATVYEV 703 (705)
T ss_pred ec-------------CchhhhhhccC--ccccceeec-cccCcceeeeeccCceEEEecCCCcc--eEEEEE
Confidence 53 22333333332 123222222 22334455567788888887764432 345543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.5e-05 Score=75.75 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred CCCcccceeec-------CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC--CccccccccceEEecCCeE
Q 002164 187 DGAKLNFVTWS-------QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP--DIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 187 ~~~~~~~~~wS-------PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~--~~~~~~~~~~~~wspDG~~ 257 (958)
++..+..-.|= |+-...|.+++ ..-|.+||.-+|+.+.-...- ...+.+ ..+++|||||+.
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr---------~~PIh~wdaftG~lraSy~~ydh~de~ta-AhsL~Fs~DGeq 172 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSR---------DQPIHLWDAFTGKLRASYRAYDHQDEYTA-AHSLQFSPDGEQ 172 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccc---------cCceeeeeccccccccchhhhhhHHhhhh-heeEEecCCCCe
Confidence 34455555664 55555555442 456888899899876432111 111111 348999999999
Q ss_pred EEEE
Q 002164 258 LVCT 261 (958)
Q Consensus 258 l~~~ 261 (958)
|+..
T Consensus 173 lfaG 176 (406)
T KOG2919|consen 173 LFAG 176 (406)
T ss_pred Eeec
Confidence 9965
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-05 Score=76.38 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred eEEEEEc-CCeeeecCCC-------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccC
Q 002164 315 QLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDL 384 (958)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~-------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~ 384 (958)
-|.++|. +|+.+--... ....++.|||||.+|+..-++ .|.++|+. |......+..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykr--------------cirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKR--------------CIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccc--------------eEEEeeccCCCCCCcchhhh
Confidence 3777888 8876543322 223478999999999866533 78888874 2222222221
Q ss_pred CccccCcccccccccCcceeeeecCCC-CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceee
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKP-STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 463 (958)
..... +...-+.-++|||-.. .+++- . -+.+-.||..+ +.+....+....+.+..+.|
T Consensus 200 ~~~k~------gq~giisc~a~sP~~~~~~a~g-s----------Y~q~~giy~~~----~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 200 TKGKF------GQKGIISCFAFSPMDSKTLAVG-S----------YGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred hcccc------cccceeeeeeccCCCCcceeee-c----------ccceeeeEecC----CCCceeeecccCCCeeeEEe
Confidence 11000 0011234578888555 44431 0 02222355544 33334445666777888999
Q ss_pred ecCCceEEEEEecc
Q 002164 464 CDDSLALVYESWYK 477 (958)
Q Consensus 464 spDg~~l~~~~~~~ 477 (958)
.+||.+|+..+..+
T Consensus 259 ~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 259 CEDGNKLFSGARKD 272 (406)
T ss_pred ccCcCeecccccCC
Confidence 99999987776544
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=80.00 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=80.7
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
+.+.+.++..++ ++..++-+|.. + .-|++++.|||...... |. .++..+.. .-..++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~LS-----------fA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSALS-----------FA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccchh-----------HH----HHHHHHHhhcceeEE
Confidence 356677766554 56666666642 1 26999999997533211 11 23334443 345667
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEec
Q 002164 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARS 791 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~ 791 (958)
+ +|.+|+|++... +-..+....|+.+.+.++-.. ++.+|+++||||||.++.+.|... |. +.+++.+.
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 8 777899987542 222456788888887777543 345899999999999999888753 44 55555544
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=76.19 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=66.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEE------cCC-----Cc---eeeccCCCCccccccccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT-----GK---ARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~------~~~-----g~---~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
..++..+|+|+|+.||-..+ ++...||... .++ .+ .++....... .+..++|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D-------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~----diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGD-------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD----DIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCC-------CceEEEEEecCcCCccccchhhhCccceEEEEEeccccc----chhhhhccCC
Confidence 37889999999999988542 2334444433 112 00 0111111111 1558899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-- 331 (958)
+..+++.+ ....++++|+ .|....+...
T Consensus 135 ~~~l~s~s-------------------------------------------------~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 135 SNFLVSGS-------------------------------------------------VDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred Cceeeeee-------------------------------------------------ccceEEEEEeccceeEeeccccc
Confidence 99998772 2234677788 7866555443
Q ss_pred ccccccccCCCCcEEEEEeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
..+..++|.|-+++|+..+.++
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred cccceeecchhhhhhhhhccCc
Confidence 6678899999999998877553
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-05 Score=76.23 Aligned_cols=197 Identities=13% Similarity=0.187 Sum_probs=119.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----Cce---------------eeccCCCCccccccccce
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKA---------------RPLFQSPDIYLNAIFDNF 249 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----g~~---------------~~lt~~~~~~~~~~~~~~ 249 (958)
......+|||||..+|. +.....|-++|++- .++ |.|.++-+. +..+
T Consensus 113 ~~cR~aafs~DG~lvAT---------GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-----vn~l 178 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVAT---------GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-----VNDL 178 (430)
T ss_pred cceeeeeeCCCCcEEEc---------cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-----ccce
Confidence 35777899999998887 44467788887761 111 122222221 5677
Q ss_pred EEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC----ee
Q 002164 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG----TV 325 (958)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g----~~ 325 (958)
.|.|-..+|+..+ ....+-++|... +.
T Consensus 179 ~FHPre~ILiS~s-------------------------------------------------rD~tvKlFDfsK~saKrA 209 (430)
T KOG0640|consen 179 DFHPRETILISGS-------------------------------------------------RDNTVKLFDFSKTSAKRA 209 (430)
T ss_pred eecchhheEEecc-------------------------------------------------CCCeEEEEecccHHHHHH
Confidence 7888887777551 112244444421 22
Q ss_pred eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCccee
Q 002164 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (958)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (958)
..+... ..+.++.|.|-|.+|++...+. .+.+||+++-+.-.-.. |.. .+..++..+
T Consensus 210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V 267 (430)
T KOG0640|consen 210 FKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQV 267 (430)
T ss_pred HHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEE
Confidence 223333 6788999999999999887542 78899998654332221 211 233567889
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEEEeccccceE
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+|+.|+..+- .+..+.|-+||- ..+...+.+.. +...+-+..|+.+|++|+.+..+.. ..
T Consensus 268 ~Ys~t~~lYvT-------------aSkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~--vk 330 (430)
T KOG0640|consen 268 RYSSTGSLYVT-------------ASKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST--VK 330 (430)
T ss_pred EecCCccEEEE-------------eccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce--ee
Confidence 99999874322 244567888873 34444444422 2335667899999999987643332 45
Q ss_pred EEEEc
Q 002164 483 TWVIS 487 (958)
Q Consensus 483 l~~~~ 487 (958)
||-+.
T Consensus 331 LWEi~ 335 (430)
T KOG0640|consen 331 LWEIS 335 (430)
T ss_pred eeeec
Confidence 66554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00072 Score=66.73 Aligned_cols=234 Identities=11% Similarity=0.033 Sum_probs=130.1
Q ss_pred cccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCC
Q 002164 139 RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK 218 (958)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~ 218 (958)
++|..+.-++++.+++-.-.-..+...-+|-. .+| ...-...+++ +.+.....+-|.++++. +...
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-~nG--erlGty~GHt--GavW~~Did~~s~~liT---------GSAD 73 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-LNG--ERLGTYDGHT--GAVWCCDIDWDSKHLIT---------GSAD 73 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEe-cCC--ceeeeecCCC--ceEEEEEecCCcceeee---------cccc
Confidence 44555555556665543322222223334432 233 1222233332 34555555566777777 4456
Q ss_pred ceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhh
Q 002164 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (958)
Q Consensus 219 ~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~ 298 (958)
..+.+||+++|+.......+.. +..+.|+++|.++++.+...-+.
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~------------------------------ 118 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY------------------------------ 118 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc------------------------------
Confidence 7788889999987655444443 67889999999988873322111
Q ss_pred ccCchhhhHHHHhhcceEEEEEc-C------C-e-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCcee
Q 002164 299 LKDEYDEDLFDYYATTQLVLVSL-D------G-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (958)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~-~------g-~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i 368 (958)
...|.++++ . + + ...|..+ ..++..-|+|-|+.|+.... .+.|
T Consensus 119 --------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-------------~G~i 171 (327)
T KOG0643|consen 119 --------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-------------DGSI 171 (327)
T ss_pred --------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------------CCcE
Confidence 112223322 1 1 1 2333333 66788899999999987763 3489
Q ss_pred EEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc
Q 002164 369 GVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP 448 (958)
Q Consensus 369 ~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 448 (958)
.+||+.++....-... .+...+.++.+|||....+-. +......++|. ..-+.
T Consensus 172 s~~da~~g~~~v~s~~-----------~h~~~Ind~q~s~d~T~FiT~-------------s~Dttakl~D~---~tl~v 224 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDE-----------EHSSKINDLQFSRDRTYFITG-------------SKDTTAKLVDV---RTLEV 224 (327)
T ss_pred EEEEcccCceeeechh-----------hhccccccccccCCcceEEec-------------ccCccceeeec---cceee
Confidence 9999986532221110 011355788999998765441 23334456664 21122
Q ss_pred eEEEeeccccCceeeecCCceEEEEEe
Q 002164 449 EILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.+-...+..++..+++|--..++....
T Consensus 225 ~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 225 LKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEeeecccccceecccccceEEecCC
Confidence 222334556777889998777776643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0012 Score=74.00 Aligned_cols=237 Identities=15% Similarity=0.100 Sum_probs=135.1
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccC-C-CCC
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF-P-DGA 189 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~-~-~~~ 189 (958)
..++||++|+.|+....+ .|.+.++.+ +... +... . +..
T Consensus 23 G~~~~s~nG~~L~t~~~d----------------------------------~Vi~idv~t----~~~~-l~s~~~ed~d 63 (775)
T KOG0319|consen 23 GPVAWSSNGQHLYTACGD----------------------------------RVIIIDVAT----GSIA-LPSGSNEDED 63 (775)
T ss_pred CceeECCCCCEEEEecCc----------------------------------eEEEEEccC----Ccee-cccCCccchh
Confidence 348999999999877653 466666654 2221 2211 1 122
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC-CCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~-~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.+.....+||+++|+...+ ..-|-+|++.+|+..+.-.. .+. ++-..++.|-|..++...
T Consensus 64 ~ita~~l~~d~~~L~~a~r---------s~llrv~~L~tgk~irswKa~He~----Pvi~ma~~~~g~LlAtgg------ 124 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASR---------SQLLRVWSLPTGKLIRSWKAIHEA----PVITMAFDPTGTLLATGG------ 124 (775)
T ss_pred hhheeeecCCccEEEEeec---------cceEEEEEcccchHhHhHhhccCC----CeEEEEEcCCCceEEecc------
Confidence 6778899999998888764 44667778778865544222 121 255788999996666441
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....+-++|. .+. ...+... +.+.+..|.|+-.+
T Consensus 125 -------------------------------------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 125 -------------------------------------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred -------------------------------------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch
Confidence 1122445555 332 3344443 77888999998775
Q ss_pred -EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 -ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 -l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+++... .++.+++||+..+.. -+.... .+...+.++.+++|+..+++.
T Consensus 162 ~lL~sg~------------~D~~v~vwnl~~~~t-cl~~~~----------~H~S~vtsL~~~~d~~~~ls~-------- 210 (775)
T KOG0319|consen 162 WLLASGA------------TDGTVRVWNLNDKRT-CLHTMI----------LHKSAVTSLAFSEDSLELLSV-------- 210 (775)
T ss_pred hheeecC------------CCceEEEEEcccCch-HHHHHH----------hhhhheeeeeeccCCceEEEe--------
Confidence 333332 245899999985443 111100 111456789999999888873
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC---Cc-eEEEEEeccccceEEEEEcCCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD---SL-ALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD---g~-~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+-...+++||. .+-+..+.+. ....+.++.+-++ ++ .+.++.... ..+..++..++
T Consensus 211 -----~RDkvi~vwd~--~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~---g~~~~~d~es~ 270 (775)
T KOG0319|consen 211 -----GRDKVIIVWDL--VQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGS---GVVQYWDSESG 270 (775)
T ss_pred -----ccCcEEEEeeh--hhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCC---ceEEEEecccc
Confidence 33445788985 3333333332 2223445555555 23 133333222 33555565554
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=84.63 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=106.9
Q ss_pred EEEEEEeCCCeEEEEEEEecC-CCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 640 ELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+.++++.||-++.+.++.-. +..++. .-+||++-|. + +|...+.. ..=++.||.|+..
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGN-------A--------GFYEvG~m--~tP~~lgYsvLGw 274 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGN-------A--------GFYEVGVM--NTPAQLGYSVLGW 274 (517)
T ss_pred eEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCC-------c--------cceEeeee--cChHHhCceeecc
Confidence 567888889999987766422 111111 4678887773 1 22222211 1226779999995
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+.. |++.+.+-. +-.+....+.+++++.++.-..-++.|.++|+|.||+.++++|..+|+ ++|+|+.+.+-|...
T Consensus 275 NhP---GFagSTG~P-~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 275 NHP---GFAGSTGLP-YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred CCC---CccccCCCC-CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 554 444443321 223444555678888888633456789999999999999999999987 899999886544221
Q ss_pred CC-CCcccccchhhh-cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCC
Q 002164 799 TP-FGFQNEDRTLWE-ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (958)
Q Consensus 799 ~~-~~~~~~~~~~~~-~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (958)
.. +.+.......-+ .-..+...+-.+.+.+.+.|+++|--++|.++.
T Consensus 350 LAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 350 LALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred HHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 10 000000000000 011111222233445567899999888888764
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=77.29 Aligned_cols=150 Identities=17% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC-------------------CC
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-------------------RT 797 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-------------------~~ 797 (958)
..+.|+..+-..|.+.--| +++ +|+|.||||+.|+..+..+|+++..+|.+++..- ..
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~ 204 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPD 204 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCC
Confidence 3477888887777775445 355 4999999999999999999999988888775211 00
Q ss_pred CCCCCccc----cc--------------------chhhh--------------cH------------------------H
Q 002164 798 LTPFGFQN----ED--------------------RTLWE--------------AT------------------------S 815 (958)
Q Consensus 798 ~~~~~~~~----~~--------------------~~~~~--------------~~------------------------~ 815 (958)
...-.|+. .. ..++. .. +
T Consensus 205 ~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ 284 (368)
T COG2021 205 WNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTR 284 (368)
T ss_pred ccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 00000000 00 00000 00 1
Q ss_pred HHHhcCccc-------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHH
Q 002164 816 TYVEMSPFM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVL 887 (958)
Q Consensus 816 ~~~~~sp~~-------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~ 887 (958)
.+..+++.. .++++++|+|++.-+.|..+| +.+.+++.++|+..+. +..++ ..||.-. -.....+.
T Consensus 285 ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~---~~~i~S~~GHDaF-L~e~~~~~ 358 (368)
T COG2021 285 ALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA---LREIDSPYGHDAF-LVESEAVG 358 (368)
T ss_pred HHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc---eEEecCCCCchhh-hcchhhhh
Confidence 112223322 267799999999999999999 9999999999998865 43443 4588632 11223344
Q ss_pred HHHHHHHH
Q 002164 888 WETDRWLQ 895 (958)
Q Consensus 888 ~~i~~fl~ 895 (958)
..|..||.
T Consensus 359 ~~i~~fL~ 366 (368)
T COG2021 359 PLIRKFLA 366 (368)
T ss_pred HHHHHHhh
Confidence 55666664
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.4e-05 Score=79.22 Aligned_cols=200 Identities=16% Similarity=0.097 Sum_probs=111.9
Q ss_pred EEEEe-cCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002164 654 ATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (958)
Q Consensus 654 ~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~ 732 (958)
.|++. |..++++. -|+|||+|||++.......++.. ..... .+.. ..+++..||- ... +...
T Consensus 108 ~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~-~~l~-~~SILvLDYs-Lt~---~~~~ 170 (374)
T PF10340_consen 108 YWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIY-KLLP-EVSILVLDYS-LTS---SDEH 170 (374)
T ss_pred EEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHH-HHcC-CCeEEEEecc-ccc---cccC
Confidence 47777 77665544 49999999986543322222110 00111 1122 4577775652 111 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEeccCCCCCCC---CCCc
Q 002164 733 DRFVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT---PFGF 803 (958)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~---~~~~ 803 (958)
...++..+.++.++.++|.+ .+ .++|.++|-|+||.+++.++..- ...-+.+|+++|=++.... +-..
T Consensus 171 ~~~yPtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 171 GHKYPTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCcCchHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 23346667788899999994 44 36899999999999999877632 1235789999986554311 0000
Q ss_pred c--cccc--------hhhh-------cHHHHHhcCcccccCC-----------CCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 804 Q--NEDR--------TLWE-------ATSTYVEMSPFMSANK-----------LKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 804 ~--~~~~--------~~~~-------~~~~~~~~sp~~~~~~-----------~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
. +... ..|. +++......|..+... -+.-++|+.|+++-. .++..++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 0 0000 0000 0000001111111110 124799999997743 68899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCccC
Q 002164 856 NALKGHGA-----LCRLVILPFESHGY 877 (958)
Q Consensus 856 ~~l~~~g~-----~~~~~~~p~~~H~~ 877 (958)
+.+...+. ..+..+.+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986542 46777788888864
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=84.29 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=105.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+...+|+|||.-|+.+. +.+.|-+|.-.|.-...+...... +...+|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G---------EDG~iKiWSrsGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------- 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG---------EDGVIKIWSRSGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------- 163 (737)
T ss_pred hhhhhcccCCCCceeeeec---------CCceEEEEeccchHHHHHhhcCce-----eEEEEECCCCCceEEe-------
Confidence 4677889999999988853 355666666444322233333332 6789999999888887
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCee-eecCCCccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV-KEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~-~~l~~~~~~~~~~~SpDGk~ 345 (958)
...++++-.+ +-+. +.-..++-+...+|+|....
T Consensus 164 -------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 164 -------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred -------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 3456777777 2232 23233367789999999988
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+.... +-+.-+||-.|... ..... ++ ..+.+++|.|| +..+++
T Consensus 201 I~sgGE-------------D~kfKvWD~~G~~L---f~S~~-~e---------y~ITSva~npd-~~~~v~--------- 244 (737)
T KOG1524|consen 201 IASGGE-------------DFRFKIWDAQGANL---FTSAA-EE---------YAITSVAFNPE-KDYLLW--------- 244 (737)
T ss_pred eeecCC-------------ceeEEeecccCccc---ccCCh-hc---------cceeeeeeccc-cceeee---------
Confidence 875542 23677898876432 21111 11 34578999999 443332
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
..+.+. +. ...-+.+..++||+||.+++....
T Consensus 245 -----S~nt~R-~~------------~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 245 -----SYNTAR-FS------------SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -----eeeeee-ec------------CCCccceEEEEEcCCCceeecccc
Confidence 111221 11 112345778999999999887653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0002 Score=80.19 Aligned_cols=202 Identities=17% Similarity=0.098 Sum_probs=123.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....+|.|..-|+- . .+..|-+|+.++.+..+-....- +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 47888899976644333 2 25677888888776654433221 44667889998888761
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
..+.|-++++ ... ...+..+ +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 2345667777 553 2233333 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEecc------CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~------~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
++..+.+. .+..||.. |...+.|.-.... .-.....+-.+++||||+.+++..
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~r------tLel~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTR------TLELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccce------EEeccccEEEEEEcCCCcEEEEEe--
Confidence 99887543 66667643 2222222211100 001113446789999999998841
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+..-.||.+|. + +---.|..+...+..+..|||++.|+..+-+.+ ..+|-+|....
T Consensus 528 ---------LdnTVkVyflDt--l--KFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGDC 584 (888)
T KOG0306|consen 528 ---------LDNTVKVYFLDT--L--KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGDC 584 (888)
T ss_pred ---------ccCeEEEEEecc--e--eeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccchh
Confidence 122234565551 1 122334566777888899999999887765554 78888877653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0026 Score=68.26 Aligned_cols=142 Identities=9% Similarity=0.139 Sum_probs=86.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.....++..|+...++.... ++.+.+|+-..-+...+... ......|.|-|
T Consensus 369 delwgla~hps~~q~~T~gq-------------dk~v~lW~~~k~~wt~~~~d---------------~~~~~~fhpsg- 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQ-------------DKHVRLWNDHKLEWTKIIED---------------PAECADFHPSG- 419 (626)
T ss_pred cceeeEEcCCChhheeeccC-------------cceEEEccCCceeEEEEecC---------------ceeEeeccCcc-
Confidence 44556778888877776653 34788898222223333332 23467799999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.++.- ...+..+++|. +.....++...+....-+.|||||..|+..+.++- .-||+++.++.
T Consensus 420 ~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~--iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 420 VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH--IYIYRVSANGR 481 (626)
T ss_pred eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe--EEEEEECCCCc
Confidence 66552 23456778875 44444455444566777899999999998875443 66777776663
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+ ............ .++.||+|++++...+
T Consensus 482 --~-y~r~~k~~gs~i-----thLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 482 --K-YSRVGKCSGSPI-----THLDWSSDSQFLVSNS 510 (626)
T ss_pred --E-EEEeeeecCcee-----EEeeecCCCceEEecc
Confidence 2 222211111111 1278999999887665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.7e-05 Score=78.65 Aligned_cols=212 Identities=12% Similarity=0.134 Sum_probs=131.5
Q ss_pred CCCCceecCCCCEEEEEecCCC---------CCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 110 PLPALSFSPQRDKILFLKRRAL---------PPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.+....|-+||++++-.+.+.. .....|.++..++..+.+.-.......++.+..|.+|++.. ..
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k------~~ 294 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK------AY 294 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh------hh
Confidence 4667888999999887776632 33446667777777666655544333444556788888832 22
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
.....--+.....+.-+ ....+ + +--...|..||..++..++-.+..+. +.++..++||..|..
T Consensus 295 C~kt~l~~S~cnDI~~~---~~~~~-S-------gH~DkkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCS---ISDVI-S-------GHFDKKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLS 358 (459)
T ss_pred eeccccccccccceEec---ceeee-e-------cccccceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEee
Confidence 22111112244555544 12233 2 11234588889888777665554442 789999999977775
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------cc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AV 333 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~ 333 (958)
.+ ....|-++|+ +.+.+..... ..
T Consensus 359 ss-------------------------------------------------RDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 359 SS-------------------------------------------------RDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ec-------------------------------------------------CCCceeeeecccccEEEEeeccccccccc
Confidence 52 1123556666 5444433321 34
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
.+...|||||++++..+.+ +.++||++.+++...+-..+... .++..++|+|-|+.+
T Consensus 390 wtrvvfSpd~~YvaAGS~d-------------gsv~iW~v~tgKlE~~l~~s~s~----------~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSAD-------------GSVYIWSVFTGKLEKVLSLSTSN----------AAITSLSWNPSGSGL 446 (459)
T ss_pred cceeEECCCCceeeeccCC-------------CcEEEEEccCceEEEEeccCCCC----------cceEEEEEcCCCchh
Confidence 6788999999999987743 48999999977765544333221 256789999999887
Q ss_pred eE
Q 002164 414 LY 415 (958)
Q Consensus 414 ~~ 415 (958)
+-
T Consensus 447 ls 448 (459)
T KOG0288|consen 447 LS 448 (459)
T ss_pred hc
Confidence 65
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0012 Score=68.62 Aligned_cols=226 Identities=17% Similarity=0.140 Sum_probs=125.0
Q ss_pred ccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 191 ~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
...++.+| ++.-++|.++ . ..-++++|..+|+..+....+..+. ....-+|||||++|+.+-
T Consensus 7 gH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTE------- 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTE------- 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEec-------
Confidence 45678899 5555566543 2 5578899999988775544444321 134778999999999771
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecC---CC-ccccccccCCCCcE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~---~~-~~~~~~~~SpDGk~ 345 (958)
++ .+ .+.+.|-++|.....+++. .. -+...+.|.|||+.
T Consensus 70 --------------nd-----------------~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t 112 (305)
T PF07433_consen 70 --------------ND-----------------YE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET 112 (305)
T ss_pred --------------cc-----------------cC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE
Confidence 11 00 0456688888843233333 22 33457889999999
Q ss_pred EEEEeec---CCcc--ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 346 ILISSIH---RPYS--FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 346 l~~~~~~---~~~~--~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
|++..-. .+.. ..........++.+.|..+++...-..++.. -....++-+++++||..++- .+
T Consensus 113 LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~V~~a---~Q 181 (305)
T PF07433_consen 113 LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGTVAFA---MQ 181 (305)
T ss_pred EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCcEEEE---Ee
Confidence 9876421 0110 0011112233555665554443221111111 01135688999999864332 11
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEE-------eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..++.. ...--|.+.+ .++..+.+. .....+.++++++||+.|+.++.+.+ .+.++|..++
T Consensus 182 ~qg~~~---~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg 249 (305)
T PF07433_consen 182 YQGDPG---DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATG 249 (305)
T ss_pred cCCCCC---ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCC
Confidence 111110 1122355554 333344442 12355678999999999999987664 3555666664
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00038 Score=74.34 Aligned_cols=264 Identities=11% Similarity=0.101 Sum_probs=154.2
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
..+.+..|||.. -.+|.+. ...+-+++..+-..++ +..+... +.+..|-.||++++..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaG----- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAG----- 86 (487)
T ss_pred CcceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhhHHhhccc-----eeEEEeecCCeEEEcc-----
Confidence 468888999833 2344443 3344555555544444 3222332 6688888999999965
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDE 343 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG 343 (958)
+ ..+.+-++|. +. ..+.+... ..+....|+|++
T Consensus 87 ----------------D----------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 87 ----------------D----------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred ----------------C----------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 0 1233445554 22 23444444 566777899988
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+.++.+..+ +..+.+||+++.... .|.. +...++..+|+|-...|+++
T Consensus 123 ~t~l~s~sD------------d~v~k~~d~s~a~v~~~l~~-------------htDYVR~g~~~~~~~hivvt------ 171 (487)
T KOG0310|consen 123 NTMLVSGSD------------DKVVKYWDLSTAYVQAELSG-------------HTDYVRCGDISPANDHIVVT------ 171 (487)
T ss_pred CeEEEecCC------------CceEEEEEcCCcEEEEEecC-------------CcceeEeeccccCCCeEEEe------
Confidence 888777644 347888999987752 2222 22567888999988888874
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
.+.++.|.+||+ .......+ .++...+..+.+-|.|..|+.+. ++ .+.++|+.+| ++.......
T Consensus 172 ------GsYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn--~vkVWDl~~G-~qll~~~~~ 236 (487)
T KOG0310|consen 172 ------GSYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG---GN--SVKVWDLTTG-GQLLTSMFN 236 (487)
T ss_pred ------cCCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CC--eEEEEEecCC-ceehhhhhc
Confidence 134567888885 22222333 35566788999999999888763 32 3444455543 111111111
Q ss_pred CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~ 581 (958)
+...+.. +.+..|++.|+...-+ .++.+||+..-+...=|.-.+. +.
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD---------------------~~VKVfd~t~~Kvv~s~~~~~p-----vL- 283 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLD---------------------RHVKVFDTTNYKVVHSWKYPGP-----VL- 283 (487)
T ss_pred ccceEEE------EEeecCCceEeecccc---------------------cceEEEEccceEEEEeeecccc-----ee-
Confidence 2222222 5667788777766532 2688888655554433433322 22
Q ss_pred ecCCCccccccccCCEEEEE
Q 002164 582 LMSDQTEGDLYLNQLKILTS 601 (958)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~ 601 (958)
+.++|||+..++.=
T Consensus 284 ------siavs~dd~t~viG 297 (487)
T KOG0310|consen 284 ------SIAVSPDDQTVVIG 297 (487)
T ss_pred ------eEEecCCCceEEEe
Confidence 24678887776653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.9e-05 Score=73.30 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=114.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+...+||.|.++|+... ...-|.+++++.-+ +..+...+. .+..+-|--..+.|+.++
T Consensus 102 ivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa----- 162 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA----- 162 (334)
T ss_pred eeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec-----
Confidence 567788999998888732 23344555554433 222322222 266777876555665431
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCCccccccccCCCCcE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDGk~ 345 (958)
....+.++|. +| +++.|.-...+.+...|+||+.
T Consensus 163 --------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 163 --------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred --------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE
Confidence 1122445566 66 4455554477899999999998
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|...- .+.|..||.+.=. .|... .++..+.+.+.+|+...++.
T Consensus 199 lTia~--------------gssV~Fwdaksf~--~lKs~-----------k~P~nV~SASL~P~k~~fVa---------- 241 (334)
T KOG0278|consen 199 LTIAY--------------GSSVKFWDAKSFG--LLKSY-----------KMPCNVESASLHPKKEFFVA---------- 241 (334)
T ss_pred EEEec--------------CceeEEecccccc--ceeec-----------cCccccccccccCCCceEEe----------
Confidence 87664 2367788876422 12111 11134567788998854333
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.++...+|.+|. .+++.... ..+.+.+-.+.|||||..-+..+++++ .+||+..+..
T Consensus 242 ---Gged~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 242 ---GGEDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred ---cCcceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 134446788885 44443333 234556677899999985555555544 8899987655
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=85.83 Aligned_cols=109 Identities=9% Similarity=-0.069 Sum_probs=72.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~ 745 (958)
.|++|++||.... + .+..+.......|.. ..|.|+++ |..|+|.+... ........+++.+
T Consensus 41 ~ptvIlIHG~~~s---------~---~~~~w~~~l~~al~~~~~d~nVI~V---Dw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTVT---------G---MFESWVPKLVAALYEREPSANVIVV---DWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCcC---------C---cchhhHHHHHHHHHhccCCCEEEEE---ECCCcCCCCCccccccHHHHHHHHHH
Confidence 5889999995311 0 011111222333332 36999994 44555554322 1223344567788
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+++|.++..++.+++.|+|||+||.+|..++.+.|.++..++...|.
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 888887654457789999999999999999999999999999998875
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00032 Score=72.77 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=116.1
Q ss_pred eEEEEEc-CCeee-ecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc
Q 002164 315 QLVLVSL-DGTVK-EIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (958)
Q Consensus 315 ~l~~~~~-~g~~~-~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~ 389 (958)
.++++|. +|+.. .+..+ -.+..-.|||||++|+.+.++.. ...+-|-+||.. ...+++...+..-
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--------~g~G~IgVyd~~-~~~~ri~E~~s~G- 98 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--------TGRGVIGVYDAA-RGYRRIGEFPSHG- 98 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--------CCcEEEEEEECc-CCcEEEeEecCCC-
Confidence 4778888 77544 44433 33457899999999998876532 235689999998 3344444433221
Q ss_pred CcccccccccCcceeeeecCCCCceEEE---Eec-cCCCccccc-ccCCeEEEEeCCCCCCCCceEEE----eeccccCc
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWA---ETQ-DGGDAKVEV-TPRDIIYTQQAEPVQGEGPEILH----KLDLRYGG 460 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~---~~~-~~~~~~~~~-~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~ 460 (958)
.++..+.|.|||++|++.. ... +.+..+.+. .....|..+|. .+|....+.. .....++-
T Consensus 99 ---------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~--~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 99 ---------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA--RSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred ---------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec--CCCceeeeeecCccccccceee
Confidence 4556799999999988741 111 111111111 12334555653 3554444432 23345778
Q ss_pred eeeecCCceEEEEEeccc---cceEEEEEcCCCCCCCcEEEeccCCccccC-CCCCCceEeccCCceEEEEeeeccCCCc
Q 002164 461 ISWCDDSLALVYESWYKT---RRTRTWVISPGSKDVAPRILFDRSSEDVYS-DPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (958)
Q Consensus 461 ~~~spDg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~ 536 (958)
+++.+||..++-..+... ...-|...+.++. ...+..+.+.... ......+++++||.+++..+.
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP------- 236 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP------- 236 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-------
Confidence 999999876544433222 1122444443331 2222222111000 001112778899988887762
Q ss_pred EEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+ ..+.+||.++|+......
T Consensus 237 -----------rG--g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 237 -----------RG--GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred -----------CC--CEEEEEECCCCCEeeccc
Confidence 11 258889999988765544
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00033 Score=75.55 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=102.4
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec-cCCCCCC------CCCC-c--------ccccchh-hhc
Q 002164 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-F--------QNEDRTL-WEA 813 (958)
Q Consensus 751 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~-~--------~~~~~~~-~~~ 813 (958)
.++..++.++.+|.|.|==|+.+..+|+.+ +|++|++.+. .+.|... ..++ . ..+.-.. .+.
T Consensus 164 ~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t 242 (367)
T PF10142_consen 164 KKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT 242 (367)
T ss_pred HhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC
Confidence 334456778999999999999999998866 6899888764 3333211 0111 0 0000000 011
Q ss_pred H---HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 814 T---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 814 ~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
+ +...-.+|+.+.++++.|-||+.|..|+... ++.+.-++..|+. ++.+..+|+++|.... ....+.+
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l 313 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSL 313 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHH
Confidence 1 2334568999999999999999999999987 8999999999876 5789999999999864 5667889
Q ss_pred HHHHHHhhccCC
Q 002164 891 DRWLQKYCVSNT 902 (958)
Q Consensus 891 ~~fl~~~l~~~~ 902 (958)
..|+.+.+.+.+
T Consensus 314 ~~f~~~~~~~~~ 325 (367)
T PF10142_consen 314 RAFYNRIQNGRP 325 (367)
T ss_pred HHHHHHHHcCCC
Confidence 999999876554
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0017 Score=81.44 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=69.9
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC--cccccccccCcceeeeecCCCC
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~--p~~~~~~~~~~~~~~~spDG~~ 412 (958)
..++++|++..|+++... .+.|++|+..++..+.+......... ..........+..++++|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 357899977777766532 34799999877665544321100000 0000011134567999999998
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----------------------cccCceeeecCCceE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------------------~~~~~~~~spDg~~l 470 (958)
|++. + ...+.|++++. +++..+.+.... .....+++++||+ |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 7763 1 23457888885 333332221100 0123578899997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
|.++..+ .+|.+++++++
T Consensus 818 -YVADs~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 -YVADSYN--HKIKKLDPATK 835 (1057)
T ss_pred -EEEECCC--CEEEEEECCCC
Confidence 3333333 56888888764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00058 Score=71.77 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=116.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....++||-..++..+ ....|++|.+-......+....+.. +..+.-.|.|++|+.++
T Consensus 263 ki~~v~~~~~~~~v~~aS---------ad~~i~vws~~~~s~~~~~~~h~~~----V~~ls~h~tgeYllsAs------- 322 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITAS---------ADEIIRVWSVPLSSEPTSSRPHEEP----VTGLSLHPTGEYLLSAS------- 322 (506)
T ss_pred EEEEEEeccchhheeecC---------CcceEEeeccccccCcccccccccc----ceeeeeccCCcEEEEec-------
Confidence 788889999887776633 3567777776544433333323222 55666778888888661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE-EEc-CC-eeeecCC---CccccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL-VSL-DG-TVKEIGP---PAVYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~-~~~-~g-~~~~l~~---~~~~~~~~~SpDG 343 (958)
+++ -|. .+. +| ....+.. .-.+++.+|+|||
T Consensus 323 --------------~d~-----------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 323 --------------NDG-----------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred --------------CCc-----------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 111 111 122 33 2222222 1457889999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
-.+.... .++.+.+||+.... .++.+|+ +...+..++||.+|-+++..
T Consensus 360 Lifgtgt-------------~d~~vkiwdlks~~--~~a~Fpg----------ht~~vk~i~FsENGY~Lat~------- 407 (506)
T KOG0289|consen 360 LIFGTGT-------------PDGVVKIWDLKSQT--NVAKFPG----------HTGPVKAISFSENGYWLATA------- 407 (506)
T ss_pred eEEeccC-------------CCceEEEEEcCCcc--ccccCCC----------CCCceeEEEeccCceEEEEE-------
Confidence 5544333 23589999998544 4444443 33566899999999877763
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.+.+.|.+||+ ..-...+.+.- ....+..+.|.+.|++|+... ...++|.++-.+
T Consensus 408 ------add~~V~lwDL--RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 408 ------ADDGSVKLWDL--RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVYICKKKT 463 (506)
T ss_pred ------ecCCeEEEEEe--hhhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEEEEeccc
Confidence 23445889997 22223333322 223567789999999988762 225677776444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=79.46 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..++|-|||.+++..... .++++|.+ || +....|+++.
T Consensus 13 hci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK-- 53 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK-- 53 (1081)
T ss_pred cchheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--
Confidence 357789999999999988764 78999985 45 4455676644
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
..++.++||-||++.|- +....-+.+|+.+-.-. |-...+.. +.-+.|.|=...|+.
T Consensus 54 DtVycVAys~dGkrFAS---------G~aDK~VI~W~~klEG~--LkYSH~D~----IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFAS---------GSADKSVIIWTSKLEGI--LKYSHNDA----IQCMSFNPITHQLAS 110 (1081)
T ss_pred ceEEEEEEccCCceecc---------CCCceeEEEecccccce--eeeccCCe----eeEeecCchHHHhhh
Confidence 46899999999998776 33355666666432111 21112211 445556666655553
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-05 Score=78.85 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
|.++. .+.+|+|.+. .. ........++...++ ..+ . .++.++|||+||.++..++.+.|++++++|..+
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~~~---~~~-~--~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAALLD---ALG-L--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHHHH---HhC-C--CceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 88988 5556777774 00 011111333333322 222 2 349999999999999999999999999999888
Q ss_pred cC
Q 002164 792 GA 793 (958)
Q Consensus 792 ~~ 793 (958)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00029 Score=75.16 Aligned_cols=225 Identities=12% Similarity=0.095 Sum_probs=135.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|-.||+.+|- ++..+.|-++|..+....+........ +....|+|++..++....+
T Consensus 69 ~~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~ap----v~~~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQAP----VHVTKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred cceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccCc----eeEEEecccCCeEEEecCC----
Confidence 35788889899998887 566778888886553333333333322 6688899988777655111
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~ 345 (958)
+ ...++ .++ ++.++ .+... +.+...+|+|-..+
T Consensus 132 ----------------d--------------------------~v~k~--~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 132 ----------------D--------------------------KVVKY--WDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred ----------------C--------------------------ceEEE--EEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 0 11122 233 33332 34444 77889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+++. .+++.|.+||......+.+.-. .+ ..+.++-+-|.|..|+.
T Consensus 168 ivvtG------------sYDg~vrl~DtR~~~~~v~eln---hg---------~pVe~vl~lpsgs~ias---------- 213 (487)
T KOG0310|consen 168 IVVTG------------SYDGKVRLWDTRSLTSRVVELN---HG---------CPVESVLALPSGSLIAS---------- 213 (487)
T ss_pred EEEec------------CCCceEEEEEeccCCceeEEec---CC---------CceeeEEEcCCCCEEEE----------
Confidence 99886 3567999999985432222211 11 23467888898888776
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC-
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS- 503 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 503 (958)
.+.+.+-+||+ ..|++.... ..+.-.+..+.+..|+..|+..+-+. +.++|. ... -+.+.....
T Consensus 214 ----AgGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd--~t~----~Kvv~s~~~~ 279 (487)
T KOG0310|consen 214 ----AGGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR--HVKVFD--TTN----YKVVHSWKYP 279 (487)
T ss_pred ----cCCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc--ceEEEE--ccc----eEEEEeeecc
Confidence 34557889996 445543222 33555677788888998887664322 134443 322 123322111
Q ss_pred ccccCCCCCCceEeccCCceEEEEe
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..+-+ +..|||++.++.+.
T Consensus 280 ~pvLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 280 GPVLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred cceee------EEecCCCceEEEec
Confidence 11112 66899999988876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0024 Score=67.16 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=136.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCC-ceEEEEEcCCCceeeccCCCCc-
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK-LRVWVADVDTGKARPLFQSPDI- 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~-~~l~~~~~~~g~~~~lt~~~~~- 240 (958)
+.++++|... ++ .+ +.-..+....+..||||+.++.....-.+..+... .-|-++|.++-.+..=...+..
T Consensus 17 ~rv~viD~d~----~k--~l-Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GK--LL-GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TE--EE-EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----Cc--EE-EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3678887532 22 22 11122345667889999999876543322222223 3456788877433221111211
Q ss_pred ccc--ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 241 YLN--AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 241 ~~~--~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
+.. .....++.|+||+++++.- .. -...+-+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N---------------------~T--------------------------Pa~SVtV 122 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQN---------------------FT--------------------------PATSVTV 122 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEE---------------------ES--------------------------SSEEEEE
T ss_pred hheecccccceEEccCCcEEEEEc---------------------cC--------------------------CCCeEEE
Confidence 100 1134788999999999761 00 1234778
Q ss_pred EEc-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCcccc
Q 002164 319 VSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 319 ~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~ 394 (958)
+|+ .++.. .+..++-..-+-+.++ + + .+.- .++.+..+.++ |+..+..+..-..+..|.
T Consensus 123 VDl~~~kvv~ei~~PGC~~iyP~~~~-~-F--~~lC-----------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~-- 185 (342)
T PF06433_consen 123 VDLAAKKVVGEIDTPGCWLIYPSGNR-G-F--SMLC-----------GDGSLLTVTLDADGKEAQKSTKVFDPDDDPL-- 185 (342)
T ss_dssp EETTTTEEEEEEEGTSEEEEEEEETT-E-E--EEEE-----------TTSCEEEEEETSTSSEEEEEEEESSTTTS-B--
T ss_pred EECCCCceeeeecCCCEEEEEecCCC-c-e--EEEe-----------cCCceEEEEECCCCCEeEeeccccCCCCccc--
Confidence 888 55433 2222211111111122 1 1 1111 12345455554 444433222111111111
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee----------cccc---Cce
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLRY---GGI 461 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~~---~~~ 461 (958)
.....++.++.+++|. +..+.||.+++ .+...+....- .|+. .-+
T Consensus 186 ------f~~~~~~~~~~~~~F~-------------Sy~G~v~~~dl---sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 186 ------FEHPAYSRDGGRLYFV-------------SYEGNVYSADL---SGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp -------S--EEETTTTEEEEE-------------BTTSEEEEEEE---TTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred ------ccccceECCCCeEEEE-------------ecCCEEEEEec---cCCcccccCcccccCccccccCcCCcceeee
Confidence 1234566666666664 56778999885 55554443211 1222 225
Q ss_pred eeecCCceEEEEEec------cccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 462 SWCDDSLALVYESWY------KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 462 ~~spDg~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
++.+..++|+..-.. +....+||++|++++ +.....+.. ..+.+ ++.|.|.+=++|....
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~-~~~~S------i~Vsqd~~P~L~~~~~----- 309 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLE-HPIDS------IAVSQDDKPLLYALSA----- 309 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--EEEEEEEEE-EEESE------EEEESSSS-EEEEEET-----
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--eEEEEEeCC-Cccce------EEEccCCCcEEEEEcC-----
Confidence 677766666654321 113478999999985 222222211 11112 6678888877776521
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
....|+++|..+|+..+-...-
T Consensus 310 --------------~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 310 --------------GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp --------------TTTEEEEEETTT--EEEEE---
T ss_pred --------------CCCeEEEEeCcCCcEEeehhcc
Confidence 1125999999999887665533
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00062 Score=71.58 Aligned_cols=241 Identities=10% Similarity=0.075 Sum_probs=142.2
Q ss_pred CCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEee
Q 002164 130 ALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRI 209 (958)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~ 209 (958)
+...+..+.++..++..+.+.+........+.+..|+||.+.. .....+. .++...+....-.|.|++++..++
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~----~s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~- 323 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL----SSEPTSS-RPHEEPVTGLSLHPTGEYLLSASN- 323 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc----ccCcccc-ccccccceeeeeccCCcEEEEecC-
Confidence 4455667888888888888887776655555567899998754 2222221 223346777788888888887653
Q ss_pred ccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcc
Q 002164 210 DAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289 (958)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (958)
....-..+..+|............ -.+.+.++.|||-++...+
T Consensus 324 --------d~~w~Fsd~~~g~~lt~vs~~~s~--v~~ts~~fHpDgLifgtgt--------------------------- 366 (506)
T KOG0289|consen 324 --------DGTWAFSDISSGSQLTVVSDETSD--VEYTSAAFHPDGLIFGTGT--------------------------- 366 (506)
T ss_pred --------CceEEEEEccCCcEEEEEeecccc--ceeEEeeEcCCceEEeccC---------------------------
Confidence 222223344444332221111110 0145888999996665331
Q ss_pred cccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCc
Q 002164 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPR 366 (958)
Q Consensus 290 ~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~ 366 (958)
..++|-++|+ .+ ...++..+ +.+..+.||-+|-||+...++ +
T Consensus 367 ----------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add-------------~ 411 (506)
T KOG0289|consen 367 ----------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD-------------G 411 (506)
T ss_pred ----------------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC-------------C
Confidence 2345667777 55 34444444 788999999999999999855 2
Q ss_pred eeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 367 QVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 367 ~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
.+.+||+..- ..+.+. ..+. .++.++.|.+-|+.++.. +..-+||.++- ..
T Consensus 412 ~V~lwDLRKl~n~kt~~---l~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~ 463 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQ---LDEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KT 463 (506)
T ss_pred eEEEEEehhhcccceee---cccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---cc
Confidence 5999999742 222222 2211 234678899999988773 23335666652 33
Q ss_pred CCceEE---EeeccccCceeeecCCceEEEEEec
Q 002164 446 EGPEIL---HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 446 ~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
+..+.+ ....+....+.|...-++++..+..
T Consensus 464 k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 464 KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred ccceeeehhhhcccccceeeecccceEEeeccch
Confidence 333333 2333344556777776666655443
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=67.56 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
.+|..+.++.-... . ++.+.+++||.|+.+++.++.+....++++++++|+---... ..+.....
T Consensus 43 ~~dWi~~l~~~v~a--~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~------------~~~~~~~t 107 (181)
T COG3545 43 LDDWIARLEKEVNA--A-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE------------IRPKHLMT 107 (181)
T ss_pred HHHHHHHHHHHHhc--c-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc------------cchhhccc
Confidence 44444544443332 2 345999999999999999998876689999999986311000 00111112
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (958)
++|. ...++.-|.+++++.+|++|+ ++++..+.+++.. .++....+||... +.....+.+..+.+|+.+
T Consensus 108 f~~~-p~~~lpfps~vvaSrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 108 FDPI-PREPLPFPSVVVASRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCC-ccccCCCceeEEEecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 2222 123345699999999999999 9999999888765 6777888899752 233444555555555543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-05 Score=82.03 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=122.5
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~- 241 (958)
.|-|++++.-|.+-. ..+.++-.+..+....|.| |..+||... +++..+||.+...|+.....|....-.
T Consensus 604 ~iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 604 VIAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred eEEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeeec
Confidence 466777755443321 1222333455888899999 888999865 566888999887776543332211100
Q ss_pred ccccccceEEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 242 LNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 242 ~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
....+.++.|.|=- ..|+.+ . ....|-++|
T Consensus 676 h~eKI~slRfHPLAadvLa~a----------------------------------------s---------yd~Ti~lWD 706 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVA----------------------------------------S---------YDSTIELWD 706 (1012)
T ss_pred ccceEEEEEecchhhhHhhhh----------------------------------------h---------ccceeeeee
Confidence 00014455555421 222221 0 224466667
Q ss_pred c-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 321 L-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 321 ~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
+ +++ .-.+..+ +.+..++|||||++++.+-.+ +++++|....++. ++...++ |.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~e~-pv~Eg~g----pv----- 763 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSREQ-PVYEGKG----PV----- 763 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCCCC-ccccCCC----Cc-----
Confidence 7 653 3355555 888999999999999988743 4888988764432 2222211 11
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEE
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
....-.+.|.=||+.+++. | ++.....+|-+|++..++++..... .+..-..--+.+.+|...|+.+.
T Consensus 764 gtRgARi~wacdgr~viv~-----G----fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVV-----G----FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEe-----c----ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 0122358899999988875 1 1112233566676544444332221 11122223467788877665553
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00044 Score=67.31 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=127.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
..|.|..+...+.......|++ +.+.+..+.|.. -|..||-++ ...+|.+|.-++|.-.++.....
T Consensus 33 ~tVkIf~v~~n~~s~ll~~L~G--h~GPVwqv~wahPk~G~iLAScs---------YDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 33 GTVKIFEVRNNGQSKLLAELTG--HSGPVWKVAWAHPKFGTILASCS---------YDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred ccEEEEEEcCCCCceeeeEecC--CCCCeeEEeecccccCcEeeEee---------cCceEEEEecCCCchhhhhhhhh-
Confidence 4677777765442223344555 335677888876 788888765 36678888877776555543222
Q ss_pred cccccccceEEecCC--eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 241 YLNAIFDNFVWVNNS--TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 241 ~~~~~~~~~~wspDG--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
..+.+.+++|.|.+ -.|++.+.+ +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~LacasSD-----------------------------------------------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACASSD-----------------------------------------------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEeeCC-----------------------------------------------CcEEEEE
Confidence 12236788999875 455555211 1222444
Q ss_pred EEcC-C-eeeecCC-C-ccccccccCCC---CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 319 VSLD-G-TVKEIGP-P-AVYTSLDPSPD---EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 319 ~~~~-g-~~~~l~~-~-~~~~~~~~SpD---Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
++.+ | ....+.. . -++++++|.|- |..+- .......+..--+..++.+-+|+.+.+..+.-.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~--~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--------- 201 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD--QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER--------- 201 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccc--cCcccccceeeccCCccceeeeecCCcchhhhh---------
Confidence 4443 3 2223322 2 66788899886 52110 000000000001123447778877753211100
Q ss_pred ccccccccCcceeeeecCCCCc-eEEEEeccCCCcccccccCCeEEEEeCCCCCCC--CceEEEeeccccCceeeecCCc
Q 002164 392 IAFNSVRKGMRSINWRSDKPST-LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSL 468 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~ 468 (958)
.+.++...+|.++|.|.-..- -+++ ..++.+.+++|..+ .+++ +.+.|...+..+..++||.-|.
T Consensus 202 -~l~~H~dwVRDVAwaP~~gl~~s~iA----------S~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 202 -TLEGHKDWVRDVAWAPSVGLPKSTIA----------SCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGN 269 (299)
T ss_pred -hhhhcchhhhhhhhccccCCCceeeE----------EecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecccc
Confidence 122333667889999964221 1211 12445556555531 1222 2233444444567789999999
Q ss_pred eEEEEEeccccceEEEEEcCCC
Q 002164 469 ALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|+.+...+ ...||.=+.++
T Consensus 270 ~LaVs~GdN--kvtlwke~~~G 289 (299)
T KOG1332|consen 270 ILAVSGGDN--KVTLWKENVDG 289 (299)
T ss_pred EEEEecCCc--EEEEEEeCCCC
Confidence 998875333 26677666554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00025 Score=71.09 Aligned_cols=247 Identities=13% Similarity=0.094 Sum_probs=129.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.+.+|++..+|.... +.... ..+.+....||-||..++.. .-..++-+||+.+|+.+++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~g---------~~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFSG---------GCDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEee---------ccCCceEEEEccCCCeeeeeecccc--
Confidence 5789999977664433 22222 23578889999999766552 2356788899999999888665554
Q ss_pred cccccceEEecCCe--EEEEEecCCCCCC-CCCCCCCCC-----CceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 243 NAIFDNFVWVNNST--LLVCTIPLLRGDP-PKKPLVPLG-----PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 243 ~~~~~~~~wspDG~--~l~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
+..+.|-+... .|+..+-++.-.. ..+...|.. .+++..+ . .+ +.........
T Consensus 116 ---vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D------------v-~~---pm~vVata~r 176 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD------------V-LY---PMAVVATAER 176 (347)
T ss_pred ---eeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh------------c-cC---ceeEEEecCC
Confidence 77899986654 4554433322110 000000000 0111110 0 00 0000001345
Q ss_pred eEEEEEc-CC--eeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEecc--CCc
Q 002164 315 QLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCD--LPL 386 (958)
Q Consensus 315 ~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~--~~~ 386 (958)
+|.+|+| ++ +.+++..+ ..++.++.-+|.+..+..+.. +.+.+..++.. .....+. +..
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-------------Grv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-------------GRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-------------ceEEEEecCCCCccCceeEEEecc
Confidence 6888888 55 33344433 456677777777766666532 35555555421 1111100 000
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceee
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISW 463 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~ 463 (958)
.. + .+..-..+.+++|.|.-..++- ++.++..-.||. + ...+| ...+..+.--.|
T Consensus 244 ~~--~--~~~~VYaVNsi~FhP~hgtlvT-------------aGsDGtf~FWDk---d--ar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 244 TN--S--VNDDVYAVNSIAFHPVHGTLVT-------------AGSDGTFSFWDK---D--ARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred CC--C--CCCceEEecceEeecccceEEE-------------ecCCceEEEecc---h--hhhhhhccCcCCCccceeEe
Confidence 00 0 0000123467888886554443 245556667773 2 12222 233455566789
Q ss_pred ecCCceEEEEEecc
Q 002164 464 CDDSLALVYESWYK 477 (958)
Q Consensus 464 spDg~~l~~~~~~~ 477 (958)
+.+|..++|+..++
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999999987443
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.9e-05 Score=73.08 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--------CceeEEEEeccCCCCCCCCCCcccccchhhhc
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP--------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p--------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (958)
-+....+|+++++.-| +|+|.|.|+.|+..+++... ..|+-+|.++|+.-...
T Consensus 91 sl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 91 SLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc---------------
Confidence 3566677888888776 79999999999999988211 23788888888643110
Q ss_pred HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 814 ~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
. + .-..+...+++|.|-+.|+.|.++| ...+..|++..+.. ..+.-| +||.+-. .....+.|.+|
T Consensus 152 ~--~---~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hp-ggH~VP~---~~~~~~~i~~f 216 (230)
T KOG2551|consen 152 K--L---DESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHP-GGHIVPN---KAKYKEKIADF 216 (230)
T ss_pred h--h---hhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecC-CCccCCC---chHHHHHHHHH
Confidence 0 0 0111234578999999999999998 88899999998875 444445 4998743 34667889999
Q ss_pred HHHhhcc
Q 002164 894 LQKYCVS 900 (958)
Q Consensus 894 l~~~l~~ 900 (958)
|...+..
T Consensus 217 i~~~~~~ 223 (230)
T KOG2551|consen 217 IQSFLQE 223 (230)
T ss_pred HHHHHHh
Confidence 9988753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=73.11 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.+.+|+... .....+.+.+ ..-.++.+.+-|-|.+|+-..+ ...|..|+.++|........+...
T Consensus 173 ~~~LWd~~~--~~~c~ks~~g--h~h~vS~V~f~P~gd~ilS~sr---------D~tik~We~~tg~cv~t~~~h~ew-- 237 (406)
T KOG0295|consen 173 SAKLWDFDT--FFRCIKSLIG--HEHGVSSVFFLPLGDHILSCSR---------DNTIKAWECDTGYCVKTFPGHSEW-- 237 (406)
T ss_pred chhheeHHH--HHHHHHHhcC--cccceeeEEEEecCCeeeeccc---------ccceeEEecccceeEEeccCchHh--
Confidence 367787732 1112223322 2237899999999999998764 567899999999877665555443
Q ss_pred ccccceEEecCCeEEEEE
Q 002164 244 AIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~ 261 (958)
+..++-.-||.+|+..
T Consensus 238 --vr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 238 --VRMVRVNQDGTIIASC 253 (406)
T ss_pred --EEEEEecCCeeEEEec
Confidence 6788888999988866
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00077 Score=71.53 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=42.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+...+.||||++||+ +.....|.+|+.++.+.++.+...... +.+++|-..-..++..
T Consensus 204 eil~~avS~Dgkylat---------gg~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLAT---------GGRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEe---------cCCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 5677889999999999 445678889999999988875544432 6677776544555544
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=64.73 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=56.4
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~ 728 (958)
|.+|.+..|.|++ . +..+|+++||.. .+...+...+..|+++||.|++ .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999975 1 478999999942 2334455678889999999999 77789998
Q ss_pred cccch---hhHHHHHHHHHHHH
Q 002164 729 EEAND---RFVEQLVACAEAAV 747 (958)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~av 747 (958)
+.+.. ..+...++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 87532 34567788877665
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.4e-05 Score=76.36 Aligned_cols=92 Identities=24% Similarity=0.190 Sum_probs=57.6
Q ss_pred EEEEEeChHHHHHHHHHHhC--------CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCC
Q 002164 761 IAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (958)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (958)
.+|+|+|.||.+|..++... ...|+.+|+++|..-.... +.......++++|
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------------------~~~~~~~~~i~iP 163 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------------------YQELYDEPKISIP 163 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE---------------------GTTTT--TT---E
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh--------------------hhhhhccccCCCC
Confidence 58999999999999888632 2358999999886321000 0111123457899
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+|-++|.+|..++ ++.++++++.+... .+++..++ ||.+-
T Consensus 164 tlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 164 TLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp EEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred eEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 9999999999998 88999999998874 57777776 89873
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=69.54 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=140.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|+|.++.. + +..+.+..+........++||+.-..++++.. ++|. |-++|+ +....++....+ .
T Consensus 38 G~L~ile~~~-~--~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGS--Lrl~d~-~~~s~Pi~~~kE--H 103 (311)
T KOG0277|consen 38 GRLFILEVTD-P--KGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDGS--LRLFDL-TMPSKPIHKFKE--H 103 (311)
T ss_pred ceEEEEecCC-C--CCeEEEEeeecccceeEeeecCCCcceEEEEe------cCce--EEEecc-CCCCcchhHHHh--h
Confidence 5789988842 1 22222222222236888999999998888764 4444 445552 222223321111 0
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
...+.++.|.+-.+.++.++. +.++-.||..+..
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsS----------------------------------------------WD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSS----------------------------------------------WDGTIKLWDPNRP 137 (311)
T ss_pred hhheEEeccccccceeEEeec----------------------------------------------cCCceEeecCCCC
Confidence 112668889976555554410 0123345554443
Q ss_pred CeeeecCCC-ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCccccccccc
Q 002164 323 GTVKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
..++..... .-+....||| ++..++..+. ++.+.+||++. ++...|..+. .
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-------------d~~l~lwdvr~~gk~~~i~ah~-------------~ 191 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASG-------------DGTLRLWDVRSPGKFMSIEAHN-------------S 191 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccC-------------CceEEEEEecCCCceeEEEecc-------------c
Confidence 334444444 6678889999 5556665553 34788999872 2222222221 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+-...|+.=...++++ .+.++.|+.||+..+. ...-.|..+...++.+.|||--..|+.+..++-.
T Consensus 192 Eil~cdw~ky~~~vl~T------------g~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLAT------------GGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred eeEeecccccCCcEEEe------------cCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 22345677766677664 1345678899862222 1223445667788999999998888877776643
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEecc-CCceEEEE
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAK 527 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~ 527 (958)
.+||...... ..+...+...+.+.+ +.||+ ++.+++..
T Consensus 259 -~riw~~~~~d---s~~e~~~~HtEFv~g------~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 259 -VRIWDPERQD---SAIETVDHHTEFVCG------LDWSLFDPGQVAST 297 (311)
T ss_pred -EEecccccch---hhhhhhhccceEEec------cccccccCceeeec
Confidence 5566544222 223344555555555 34555 34445443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00023 Score=71.32 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=151.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCch---------------------------hcccccceeeceeecCCCCCccceeeE
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLE---------------------------ELARPEEKLAGLRIDGKCNTRSRMSFY 162 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (958)
+....+|||||..+|..+.++-..+. .|-.+-..+.-+.+-|.+......+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 35678899999999987766221111 111111222334444444444334444
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..+.+.|.+- . ...+..+-+.+...+...+|.|-|+.|+... ....+.++|+++-+.-.- ..+....
T Consensus 194 ~tvKlFDfsK-~--saKrA~K~~qd~~~vrsiSfHPsGefllvgT---------dHp~~rlYdv~T~Qcfvs-anPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSK-T--SAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---------DHPTLRLYDVNTYQCFVS-ANPDDQH 260 (430)
T ss_pred CeEEEEeccc-H--HHHHHHHHhhccceeeeEeecCCCceEEEec---------CCCceeEEeccceeEeee-cCccccc
Confidence 5677777632 1 1223333344445788999999999999844 466788888887655322 2244444
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
.+.+..+.+|+.|++-+..+ ..+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS-------------------------------------------------kDG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS-------------------------------------------------KDGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec-------------------------------------------------cCCcEEeeccc
Confidence 45577889999997555441 1122444443
Q ss_pred CC-eeeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 322 DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 ~g-~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
.+ -++.+... ..+.+..|+.|||+|+.+..+ ..+.+|.+.++..-......+....-
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-------------S~vkLWEi~t~R~l~~YtGAg~tgrq------ 352 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-------------STVKLWEISTGRMLKEYTGAGTTGRQ------ 352 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-------------ceeeeeeecCCceEEEEecCCcccch------
Confidence 33 22233221 567788999999999877633 47889999866543333322111100
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEec
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
.-.....|.....+++|-- ...+.+..||. .++.....+ ..+++.++.+.-||.+-.++..+.
T Consensus 353 -~~rtqAvFNhtEdyVl~pD------------Eas~slcsWda--Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd- 416 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPD------------EASNSLCSWDA--RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD- 416 (430)
T ss_pred -hhhhhhhhcCccceEEccc------------cccCceeeccc--cchhhhhhcccCCCCCceEEEeCCCCCceeeecc-
Confidence 0112233444333433310 11335677775 333333333 345666777788888765544332
Q ss_pred cccceEEEEE
Q 002164 477 KTRRTRTWVI 486 (958)
Q Consensus 477 ~~~~~~l~~~ 486 (958)
..+.+.|.-
T Consensus 417 -D~raRFWyr 425 (430)
T KOG0640|consen 417 -DFRARFWYR 425 (430)
T ss_pred -cceeeeeee
Confidence 233556643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00036 Score=67.45 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=110.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|.-||++.+....+ ..+.+|+... | .-.+...+ +|.
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g--~liktYsg--hG~ 60 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-G--ALIKTYSG--HGH 60 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-c--ceeeeecC--CCc
Confidence 46678899999998877665 4788998643 2 12333333 445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....-|-|..+++- ..+...+++||+++|+..+-....... +..++|..+...++..+-+...
T Consensus 61 EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~SgsfD~s~-- 125 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASGSFDSSV-- 125 (307)
T ss_pred eeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEecccccee--
Confidence 7888888889988877 446789999999999876655444443 6788888888777755322111
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccC----c-hhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKD----E-YDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~----~-~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG 343 (958)
+.|+-+......+....+.... . .+..+..-...+.+-.+++ .|....-.-+..++.+.||+||
T Consensus 126 ----------r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 126 ----------RLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDG 195 (307)
T ss_pred ----------EEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCC
Confidence 1111111111000000000000 0 0000000002234555565 5543322222567899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
+..+..+.+ +.+.+.|.++++.
T Consensus 196 nc~La~~l~-------------stlrLlDk~tGkl 217 (307)
T KOG0316|consen 196 NCSLASSLD-------------STLRLLDKETGKL 217 (307)
T ss_pred CEEEEeecc-------------ceeeecccchhHH
Confidence 999888743 4788888876653
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00046 Score=71.67 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=82.1
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCC-CcCcHHHHHHH-HCCcEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~v 715 (958)
..+++++.. |+..+.+..+.-+.+.+ ---||+.-|... .+.. ... .........++ +.|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 457788887 99999888876333322 335777666321 1110 000 00112233444 478999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
+. +.++|.|.+.+..+ ..+++.|..++++||+++. .+.+++|.+.|||.||.++..++.+.
T Consensus 175 l~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LV---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EE---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99 55567777776655 4899999999999999854 36889999999999999988766554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0041 Score=78.17 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=70.9
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCc-c-ccC-cc------cccccccCccee
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-A-EDI-PI------AFNSVRKGMRSI 404 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~-~-~~~-p~------~~~~~~~~~~~~ 404 (958)
...++++|||++|+++... .+.|.+||++++..+.+..... . ... .. ........+..+
T Consensus 742 P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 3457899999998877633 3489999998655443321100 0 000 00 000111245678
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--------------cccCceeeecCCceE
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LRYGGISWCDDSLAL 470 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--------------~~~~~~~~spDg~~l 470 (958)
.+++||. +++ ++ ...+.|.+++. +++....+.... .....+++++||+ |
T Consensus 810 avd~dG~-LYV-AD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l 872 (1057)
T PLN02919 810 LCAKDGQ-IYV-AD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L 872 (1057)
T ss_pred eEeCCCc-EEE-EE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence 9999997 333 22 33557888884 555544442211 1234579999997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+ .++..+ ..|.++++.++
T Consensus 873 y-VaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 873 F-VADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred E-EEECCC--CEEEEEECCCC
Confidence 3 334333 56888888775
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0019 Score=69.93 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=41.3
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
+......+..++|||||++|+..+.++- .+|+.+ ++. +..-+...-.+ +-..++||||||+|+....
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGf--LRvF~f--dt~--eLlg~mkSYFG------GLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGF--LRIFDF--DTQ--ELLGVMKSYFG------GLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCce--EEEeec--cHH--HHHHHHHhhcc------ceEEEEEcCCccEEEecCC
Confidence 3344456788999999999999876553 445444 431 11222211111 1223789999999998764
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00077 Score=73.97 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=54.1
Q ss_pred cCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHh
Q 002164 826 ANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 826 ~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+++|+ +|+|.+-|+.|.++| +.++..+.+.+...+ ..++....+++||. +.+...+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 35688 999999999999999 999988888764433 24556677788996 455666677888899998763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00057 Score=69.24 Aligned_cols=106 Identities=10% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..-+|++|+..+|...+. .++.|+.....+-....+.+.. +..
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~~~~w~~~htls~--Hd~ 56 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLGADLWEPAHTLSE--HDK 56 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecCCCCceeceehhh--hCc
Confidence 56778999999999988764 3667776633110122333432 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc-CCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~-~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+..+-|+|.+.+|..+.. ..+-|++.. ++|+-.+..-. -++|.....+.|+|.+..|++.
T Consensus 57 ~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~WkptlvL--lRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLVL--LRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred ceeEEeecCCCCceeEccC---------CCCccccccCCCCeeccceeE--EEeccceeeEeecCcCceEEec
Confidence 7788999999999999763 334455555 55543322111 1223336689999999988876
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=77.83 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=59.5
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+..++|||||++||.++.+ +-+.|++.++.++.-+.. +.-++.--+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqD-------------GfLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQD-------------GFLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecC-------------ceEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 577899999999999999854 378888877544322211 0113345589999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceeeec
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCD 465 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~sp 465 (958)
+|+.- ++++-|-+|.. . +.+.+ ..+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 98872 45555667775 2 12222 34455677788876
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0052 Score=65.46 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=89.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|.|.|+.+.|+|+- -....|+.++.++|+.+.... +.. +.....-.++..|+..
T Consensus 27 gEgP~w~~~~~~L~w~D--------I~~~~i~r~~~~~g~~~~~~~-p~~-----~~~~~~~d~~g~Lv~~--------- 83 (307)
T COG3386 27 GEGPVWDPDRGALLWVD--------ILGGRIHRLDPETGKKRVFPS-PGG-----FSSGALIDAGGRLIAC--------- 83 (307)
T ss_pred ccCccCcCCCCEEEEEe--------CCCCeEEEecCCcCceEEEEC-CCC-----cccceeecCCCeEEEE---------
Confidence 45689999999998864 246799999998776654433 322 3344444444444433
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC------ccccccccCCC
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP------AVYTSLDPSPD 342 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~------~~~~~~~~SpD 342 (958)
...+++++. +|.. +.+... .........||
T Consensus 84 ------------------------------------------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 84 ------------------------------------------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred ------------------------------------------ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 011344443 3333 333322 22346677889
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|+..+-+. .. ........+..+.+|.++..+...+.+...- ....+++|||||+.+++. +
T Consensus 122 G~~wfgt~-~~-~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~~~NGla~SpDg~tly~a-D---- 181 (307)
T COG3386 122 GRIWFGDM-GY-FDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-------------TIPNGLAFSPDGKTLYVA-D---- 181 (307)
T ss_pred CCEEEeCC-Cc-cccCccccCCcceEEEEcCCCCEEEeecCcE-------------EecCceEECCCCCEEEEE-e----
Confidence 87544333 31 0000011123347888887666666655411 123579999999988773 2
Q ss_pred CCcccccccCCeEEEEeCC
Q 002164 423 GDAKVEVTPRDIIYTQQAE 441 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~ 441 (958)
+....|+.++.+
T Consensus 182 -------T~~~~i~r~~~d 193 (307)
T COG3386 182 -------TPANRIHRYDLD 193 (307)
T ss_pred -------CCCCeEEEEecC
Confidence 335678888763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=77.33 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=52.7
Q ss_pred eEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccCCCC
Q 002164 161 FYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPD 239 (958)
Q Consensus 161 ~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~~~~ 239 (958)
.++-|.+|.-+ |-+ ...+. ..+..+..++|.||+..|+|+. ..++++-+++- .++.+.-.+.+
T Consensus 124 EDG~iKiWSrs--GML--RStl~--Q~~~~v~c~~W~p~S~~vl~c~----------g~h~~IKpL~~n~k~i~WkAHDG 187 (737)
T KOG1524|consen 124 EDGVIKIWSRS--GML--RSTVV--QNEESIRCARWAPNSNSIVFCQ----------GGHISIKPLAANSKIIRWRAHDG 187 (737)
T ss_pred CCceEEEEecc--chH--HHHHh--hcCceeEEEEECCCCCceEEec----------CCeEEEeecccccceeEEeccCc
Confidence 33678888752 311 12222 1334789999999999999986 56888888764 23444433333
Q ss_pred ccccccccceEEecCCeEEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~ 261 (958)
- +-.+.|++...+|+..
T Consensus 188 i-----iL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 188 L-----VLSLSWSTQSNIIASG 204 (737)
T ss_pred E-----EEEeecCccccceeec
Confidence 2 5588899998888854
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.001 Score=74.02 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=101.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+...++||||++||+..-. +..|+.+..++ .-+.+.+...+...
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----------------------------------~~~iy~L~~~~-~vk~~~v~~~~~~~ 428 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----------------------------------RTKIYRLQPDP-NVKVINVDDVPLAL 428 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----------------------------------ceEEEEeccCc-ceeEEEeccchhhh
Confidence 46678899999999998742 33444454433 11222222222111
Q ss_pred -cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 -~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
......|+-|+..++++.. ....|...++++...+.+.......-...+..++-||||++|+...
T Consensus 429 ~~a~~i~ftid~~k~~~~s~--------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~------ 494 (691)
T KOG2048|consen 429 LDASAISFTIDKNKLFLVSK--------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS------ 494 (691)
T ss_pred ccceeeEEEecCceEEEEec--------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe------
Confidence 4567788999998888761 2557777777775544433221111112267888999999999871
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCC-CCc
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSP-DEK 344 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~Sp-DGk 344 (958)
..++|+++++ +++.+.+... ..++...++| +-+
T Consensus 495 -------------------------------------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 495 -------------------------------------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred -------------------------------------------ccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 3467999999 7777666533 5667788886 444
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCce
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~ 377 (958)
.|++... .++++-+|++...
T Consensus 532 ~lvvats-------------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATS-------------NNQVFEFDIEARN 551 (691)
T ss_pred cEEEEec-------------CCeEEEEecchhh
Confidence 6665543 3488888885433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0022 Score=66.95 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=87.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....|++||||+.+||+.. .++...||+....+. ...+..... +..+.|+++|...++.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~~-~~~--- 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVDD-GSG--- 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEEc-CCC---
Confidence 6889999999999999872 446789999986554 444332222 67899999976555441 000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--eeeecCCC--c-cccccccCCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP--A-VYTSLDPSPDE 343 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--~~~~l~~~--~-~~~~~~~SpDG 343 (958)
...+ ..+. +| ....+... . .+..+.+||||
T Consensus 88 -------------------------------------------~~~~-~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 88 -------------------------------------------GVRV-VRDSASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred -------------------------------------------ceEE-EEecCCCcceeEEecccccCCceEEEEECCCC
Confidence 0111 1122 33 23333322 2 68899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEecc---CceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~---~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.++++...... .+++++-.+. .+..+.+.... .-. ......+..+.|++|++.++.
T Consensus 124 ~RvA~v~~~~~----------~~~v~va~V~r~~~g~~~~l~~~~-~~~-----~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 124 TRVAVVVEDGG----------GGRVYVAGVVRDGDGVPRRLTGPR-RVA-----PPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred cEEEEEEecCC----------CCeEEEEEEEeCCCCCcceeccce-Eec-----ccccCcceeeeecCCCEEEEE
Confidence 99999985432 2467766544 22122322210 000 001134568999999975555
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00048 Score=67.15 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=105.9
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
-|.|++++.. ..++..+.+++ +.+..+.|--..+.|+-.. ....|.+||..+|...+-...+..
T Consensus 123 llrvfdln~p--~App~E~~ght--g~Ir~v~wc~eD~~iLSSa---------dd~tVRLWD~rTgt~v~sL~~~s~--- 186 (334)
T KOG0278|consen 123 LLRVFDLNRP--KAPPKEISGHT--GGIRTVLWCHEDKCILSSA---------DDKTVRLWDHRTGTEVQSLEFNSP--- 186 (334)
T ss_pred HhhhhhccCC--CCCchhhcCCC--CcceeEEEeccCceEEeec---------cCCceEEEEeccCcEEEEEecCCC---
Confidence 3556666331 14556666655 4588888987777777643 256788888888877665444433
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
+.++..++||++|.++ ..+.+--++.
T Consensus 187 --VtSlEvs~dG~ilTia--------------------------------------------------~gssV~Fwdaks 214 (334)
T KOG0278|consen 187 --VTSLEVSQDGRILTIA--------------------------------------------------YGSSVKFWDAKS 214 (334)
T ss_pred --CcceeeccCCCEEEEe--------------------------------------------------cCceeEEecccc
Confidence 6789999999998866 1112223333
Q ss_pred CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCc
Q 002164 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 322 ~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
-|.++....+..+.+.+++|+...++... .+..++.+|.++++...... .+....+
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGg-------------ed~~~~kfDy~TgeEi~~~n-----------kgh~gpV 270 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGG-------------EDFKVYKFDYNTGEEIGSYN-----------KGHFGPV 270 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecC-------------cceEEEEEeccCCceeeecc-----------cCCCCce
Confidence 23333333336788899999885443332 12367788888766544421 1222345
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
..+.|||||...+. .++++.|.+|..
T Consensus 271 hcVrFSPdGE~yAs-------------GSEDGTirlWQt 296 (334)
T KOG0278|consen 271 HCVRFSPDGELYAS-------------GSEDGTIRLWQT 296 (334)
T ss_pred EEEEECCCCceeec-------------cCCCceEEEEEe
Confidence 67899999985444 255667777764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=72.45 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=69.4
Q ss_pred ceEEEEEcCCeeeecC--CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCcccc
Q 002164 314 TQLVLVSLDGTVKEIG--PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~~g~~~~l~--~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~ 389 (958)
..+++.++.....+.. .. +.+..+.|.|---++++.+.+ .+.+||+...+ ++.|....
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~---- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS---- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC----
Confidence 4567777743333322 12 667788999988888887744 78999987432 22222211
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCce--------
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGI-------- 461 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~-------- 461 (958)
..+..++.+|.|..|++. +....+..+|+ .+.++..+.+-.+...++++
T Consensus 608 ---------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 608 ---------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred ---------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccce
Confidence 245678899999988883 34455666665 23443333442222233333
Q ss_pred --eeecCCceEEEEE
Q 002164 462 --SWCDDSLALVYES 474 (958)
Q Consensus 462 --~~spDg~~l~~~~ 474 (958)
+-|+||..++|-.
T Consensus 665 fas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHG 679 (733)
T ss_pred eeeecCCCcEEEEee
Confidence 2356777777764
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=85.44 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=64.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-----------------
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~----------------- 732 (958)
.|+||++||.... .......+..|+++||.|++ .|.+|||.+...
T Consensus 449 ~P~VVllHG~~g~---------------~~~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITGA---------------KENALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCCC---------------HHHHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 6899999994211 11112446678889999999 555666666211
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 733 --------~~~~~~~~~D~~~av~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
++-+.+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1134677888888777776 21 124567999999999999999998864
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00084 Score=74.03 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
-+...+|-|||..|+... ...|+++|+..|.. +.|-.+... +.-++||.||+.++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt-----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT-----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce-----EEEEEEccCCceeccC
Confidence 578899999999999865 56899999886654 444333332 7789999999999855
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00051 Score=72.25 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=47.3
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE----EeeccccCceeeecCCceEEEEEe
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.+.++..|+||+.+++- +..+.|-++++ .+.+.+ ..+...+..+.|+||.++++-.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~-----~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA-----KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe-----ceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 56789999999999984 33445666663 222332 223456788999999999887654
Q ss_pred ccccceEEEEEcCCC
Q 002164 476 YKTRRTRTWVISPGS 490 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~ 490 (958)
..+ ..|..+..+.
T Consensus 345 ~~~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 345 DNE--AAVTKLAVDK 357 (398)
T ss_pred CCc--eeEEEEeecc
Confidence 443 5676666544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.024 Score=70.00 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
+...++|..||+++++.+-.... +.+..+.+|+- +| ...-. ...++-...++|.|.|..|+.......
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 44679999999998886332111 12445777773 43 22222 122334456899999999998875333
Q ss_pred cceEEEEEcCCCCCC-CcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDV-APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...|..+.-.|-.. +...-++.....+.. +.|++|+..|+...
T Consensus 280 -~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 280 -RHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 35566666555211 111111111122222 88999999988876
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0022 Score=66.92 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
....+++||||+.+||+... ++ . ..|++... ++ ....+. .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~----------------------~~--~------~~L~~~~~--~~---~~~~~~---~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG----------------------DG--G------RSLYVGPA--GG---PVRPVL---TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc----------------------CC--C------CEEEEEcC--CC---cceeec---cCC
Confidence 46789999999999998821 00 0 36777654 22 222321 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
....|+|++||...++ .+ +.....+++ +...++ ...+-..... ..+..+++||||.++++..
T Consensus 67 ~l~~PS~d~~g~~W~v-~~------~~~~~~~~~-~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTV-DD------GSGGVRVVR-DSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEE-Ec------CCCceEEEE-ecCCCcceeEEecccccC---CceEEEEECCCCcEEEEEE
Confidence 6899999999754444 32 122223332 323333 2333221111 0278999999999999883
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.012 Score=67.10 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=104.7
Q ss_pred CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE--ecCCeEEEEEecCCCCCCCCCCCC
Q 002164 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIPLLRGDPPKKPLV 275 (958)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~~~~~~~~~~~~~~ 275 (958)
-||++|.. . +..+..|-+++++.-+..+++..++... +...++ .|.-.+++....- ..|..
T Consensus 139 ydGr~~fi-n-------dk~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~e~------~~Plp 201 (635)
T PRK02888 139 YDGRYLFI-N-------DKANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNGEF------RIPLP 201 (635)
T ss_pred cceeEEEE-e-------cCCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCccc------ccccC
Confidence 48877654 3 3347889999999888777777666421 223333 3677777654100 00001
Q ss_pred CCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeecC
Q 002164 276 PLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 276 ~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
+.+..+...+ + ..+.+-.+|. +-+ ..++.-++.....+++|||+++++++...
T Consensus 202 nDGk~l~~~~----------------e---------y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs 256 (635)
T PRK02888 202 NDGKDLDDPK----------------K---------YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS 256 (635)
T ss_pred CCCCEeeccc----------------c---------eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCc
Confidence 1111110000 0 2234556665 322 23333234556789999999999986321
Q ss_pred CccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCC
Q 002164 354 PYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRD 433 (958)
Q Consensus 354 ~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 433 (958)
. ....+...+............. ..-.+.+||+...+ ..+
T Consensus 257 E---------~G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V---------------~gn 296 (635)
T PRK02888 257 E---------EGVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTI---------------GGS 296 (635)
T ss_pred c---------cCcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEE---------------CCC
Confidence 1 1123333333221111111100 11246678886554 134
Q ss_pred eEEEEeCCCCC----CCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 434 IIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 434 ~l~~~~~~~~~----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|-++|. .. +.+............++.+||||++++.+.... ..+-++|+..
T Consensus 297 ~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS---~tVSVIDv~k 352 (635)
T PRK02888 297 KVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS---PTVTVIDVRK 352 (635)
T ss_pred EEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC---CcEEEEEChh
Confidence 5777875 22 122222223344456789999999998775433 3466777665
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0021 Score=62.29 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=120.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+..+.+.-||++.+.+.. ...|.+|++..|...+-....+.. +-..+-+-|...|+..
T Consensus 18 gaV~avryN~dGnY~ltcGs---------drtvrLWNp~rg~liktYsghG~E----VlD~~~s~Dnskf~s~------- 77 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGS---------DRTVRLWNPLRGALIKTYSGHGHE----VLDAALSSDNSKFASC------- 77 (307)
T ss_pred cceEEEEEccCCCEEEEcCC---------CceEEeecccccceeeeecCCCce----eeeccccccccccccC-------
Confidence 36788899999999988653 567888999888877665555433 5567777787777743
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
. +...++++|+ +|+ .+++..+ +.+..+.|..+..-
T Consensus 78 ----------------G--------------------------gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 78 ----------------G--------------------------GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ----------------C--------------------------CCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 0 3456788888 885 4555555 78888999877665
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
++-.+ ++..+.+||-.....+++..+... ..++.++..+ +..|+-
T Consensus 116 v~Sgs-------------fD~s~r~wDCRS~s~ePiQildea----------~D~V~Si~v~--~heIva---------- 160 (307)
T KOG0316|consen 116 VASGS-------------FDSSVRLWDCRSRSFEPIQILDEA----------KDGVSSIDVA--EHEIVA---------- 160 (307)
T ss_pred EEecc-------------ccceeEEEEcccCCCCccchhhhh----------cCceeEEEec--ccEEEe----------
Confidence 55444 456899999986555444332211 1222333222 122221
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+..+.+..+|+ ..|.... ......+..+.||+||+..+..+-. +.|..+|-++|
T Consensus 161 ---GS~DGtvRtydi--R~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~----stlrLlDk~tG 215 (307)
T KOG0316|consen 161 ---GSVDGTVRTYDI--RKGTLSS--DYFGHPITSVSFSKDGNCSLASSLD----STLRLLDKETG 215 (307)
T ss_pred ---eccCCcEEEEEe--ecceeeh--hhcCCcceeEEecCCCCEEEEeecc----ceeeecccchh
Confidence 133445666664 2221110 1123456789999999998877543 34777887775
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=71.98 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=41.3
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHH-------HHHHhCCCcEEEEEeCCCCcc
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~p~~~H~ 876 (958)
.+++|++|+++++|..|.+.| +.|+..+. +.++..|..+-+.+-+..||.
T Consensus 292 DLr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 292 DLRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred ehhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 356789999999999999998 99985443 566777888888888999996
|
Their function is unknown. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.018 Score=61.29 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
..||+++. ++..+.+... .....++|||||+.++++-.. .+.|+.++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 46999997 5566666664 566789999999999888644 2367777765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.033 Score=53.67 Aligned_cols=137 Identities=7% Similarity=0.011 Sum_probs=75.4
Q ss_pred cceEEEEEc-CCeee-ecCCC-ccc-cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCcc
Q 002164 313 TTQLVLVSL-DGTVK-EIGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~-~l~~~-~~~-~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~ 387 (958)
.-.||+-|- .|+.- .+... +.+ .-+.|+ |-.++..+ .++.|..||+. ...++.+...-..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs-------------qdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS-------------QDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC-------------CCceEEEEeeeccceeeeccCcccC
Confidence 346888887 66433 33333 333 344564 54444333 24589999987 3344444321110
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spD 466 (958)
.... ...+..+...|.|+.++-- .....-.++|+ .|+.. +....+..+++.+.|||.
T Consensus 227 ~gle------ssavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 227 GGLE------SSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred CCcc------cceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCCC
Confidence 0000 0234567888888876541 12233456664 45444 444667778899999998
Q ss_pred CceEEEEEeccccceEEEEEcCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
-.+++..+- + ..|.+-|+.+
T Consensus 285 a~yllt~sy-d---~~ikltdlqg 304 (350)
T KOG0641|consen 285 AHYLLTCSY-D---MKIKLTDLQG 304 (350)
T ss_pred ceEEEEecc-c---ceEEEeeccc
Confidence 877765543 3 2466666655
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00055 Score=71.97 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=65.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CCcEEEEcCCCCCCCCCCcccc-----h-hh--HHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----D-RF--VEQ 738 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~vl~~~~~~~~G~G~~~~~-----~-~~--~~~ 738 (958)
.+++|++-|.|. ...++..+...+.+ ..|.|+. .+..|+...... . .. ...
T Consensus 2 ~~li~~IPGNPG---------------lv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPG---------------LVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCC---------------hHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 578899988763 22333344444543 4788888 555565433222 1 11 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccC
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (958)
-++-..+.++.+.........++.++|||.|+++++.++.+.+ ..+..++...|.
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPT 121 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPT 121 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCc
Confidence 3333344444444432113468999999999999999999998 577888877774
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.012 Score=56.59 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=65.1
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..++..|.|+.|+....+ ....+||+.|+...+-.. | ....++.+.|||...+
T Consensus 233 avaav~vdpsgrll~sg~~d-------------ssc~lydirg~r~iq~f~-p-----------hsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHAD-------------SSCMLYDIRGGRMIQRFH-P-----------HSADIRCVRFSPGAHY 287 (350)
T ss_pred eeEEEEECCCcceeeeccCC-------------CceEEEEeeCCceeeeeC-C-----------CccceeEEEeCCCceE
Confidence 45678899999988765432 367799999876544221 1 1134678999996655
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-----EeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
++- .+....|.+.|+ .|.-..+| ..+....-...|.|..-.++.++.+.+ ..||.+
T Consensus 288 llt-------------~syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~ 348 (350)
T KOG0641|consen 288 LLT-------------CSYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWAL 348 (350)
T ss_pred EEE-------------ecccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEecc
Confidence 443 134556777764 65544444 233334445678887644444433333 456654
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00088 Score=73.75 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCC
Q 002164 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (958)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (958)
+..-...|.|+|+|||+.++.++....-+ .+.|+||+.-.++..-.+.+. +-+.+-.++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 33344689999999998888888776533 478888876444322111111 11223346899
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~ 878 (958)
+|++.|.+|..++ +...+++.++++.. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88899999988874 89999999999984
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=67.76 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC-CCCCCceeeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~~~lt~~~~~~ 189 (958)
..-.++||.|+++|..-.+ +.|.+|.--. ++.-...+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4557889999998876553 3566765322 111123455543 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+...+||+||.+|+- +.....|.+|.+++++.+-|-. +.+.+..+.||||+......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~kqfLPR-----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGKKQFLPR-----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCCcccccc-----cCCeeEEEEEcCCCCeEEEE
Confidence 7889999999999887 4447788888888888444422 22337799999999877765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.011 Score=66.27 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=50.6
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+..++.||+|+.|+-..... ..+...|++|+. ..=.+...|..+...+..+.|||||++|+..+.+..
T Consensus 527 Ev~~l~~s~~gnliASaCKS~--------~~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt- 595 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSS--------LKEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT- 595 (764)
T ss_pred eEEEEEecCCCCEEeehhhhC--------CccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeecCce-
Confidence 356788999998777532211 123445888884 222344567778888999999999999998875544
Q ss_pred ceEEEEE
Q 002164 480 RTRTWVI 486 (958)
Q Consensus 480 ~~~l~~~ 486 (958)
..||..
T Consensus 596 -~sl~~~ 601 (764)
T KOG1063|consen 596 -VSLYEV 601 (764)
T ss_pred -EEeeee
Confidence 556655
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00046 Score=75.53 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred CCccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec
Q 002164 330 PPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 330 ~~~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
++..++++.|.| |-.+|++..++ +.|.+|.+..+........|... .......+.++.|.|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~dd-------------g~i~lWr~~a~gl~e~~~tPe~~-----lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDD-------------GQINLWRLTANGLPENEMTPEKI-----LTIHGEKITSLRFHP 687 (1012)
T ss_pred cCceeeecccCCCChHHeeecccC-------------ceEEEEEeccCCCCcccCCccee-----eecccceEEEEEecc
Confidence 335678899999 88899988744 48889988743222111111000 001113456677777
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 409 DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
=..-++. ..+.+..|-+||+ .++...-.+..+...+.+++|||||+.|+....++ +|+++.+
T Consensus 688 LAadvLa------------~asyd~Ti~lWDl--~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----~~rVy~P 749 (1012)
T KOG1445|consen 688 LAADVLA------------VASYDSTIELWDL--ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----TLRVYEP 749 (1012)
T ss_pred hhhhHhh------------hhhccceeeeeeh--hhhhhhheeccCcCceeEEEECCCCcceeeeecCc----eEEEeCC
Confidence 3222222 1234556888986 44555566777777889999999999999876443 4777777
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+++ ..+.++.... +..++ .+.|.-||++|+...
T Consensus 750 rs~e---~pv~Eg~gpv--gtRgA-Ri~wacdgr~viv~G 783 (1012)
T KOG1445|consen 750 RSRE---QPVYEGKGPV--GTRGA-RILWACDGRIVIVVG 783 (1012)
T ss_pred CCCC---CccccCCCCc--cCcce-eEEEEecCcEEEEec
Confidence 7642 2232222111 00011 155777777766654
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=70.79 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
.....++++|..|+.++- ++-....+..++-....+++..+++.+++.-.. ++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw---~nPd~~~~~~~~edYi~e~l~~aid~v~~itg~--~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISW---RNPDASLAAKNLEDYILEGLSEAIDTVKDITGQ--KDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEec---cCchHhhhhccHHHHHHHHHHHHHHHHHHHhCc--cccceeeEecchHHHHHHHHhhhh
Confidence 456688899999988333 222223334455555668888999999886333 589999999999999999998877
Q ss_pred c-eeEEEEeccCCC
Q 002164 783 L-FCCGIARSGAYN 795 (958)
Q Consensus 783 ~-~~a~v~~~~~~~ 795 (958)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 787777665444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00035 Score=82.19 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=125.6
Q ss_pred CCCCCcccceeecCCCCe----EEEEEeeccccCCCCCceEEEEEcCC----CceeeccCCCCccccccccceEEecCCe
Q 002164 185 FPDGAKLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~----iaf~~~~~~~~~~~~~~~l~~~~~~~----g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
+.....-+..+|++-|.. ||- +.++++|-+|+++. ++...|..... .++.+..+.|.+.+.
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaG---------G~edG~I~ly~p~~~~~~~~~~~la~~~~--h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAG---------GLEDGNIVLYDPASIIANASEEVLATKSK--HTGPVLGLDFNPFQG 129 (1049)
T ss_pred ccccccceeeeecccCCCccceeec---------cccCCceEEecchhhccCcchHHHhhhcc--cCCceeeeeccccCC
Confidence 333346778999998888 443 33455666666543 22222221111 122366788998876
Q ss_pred -EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC----
Q 002164 257 -LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP---- 331 (958)
Q Consensus 257 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~---- 331 (958)
+|+... ..++|+++|+..-....+.+
T Consensus 130 nlLASGa-------------------------------------------------~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 130 NLLASGA-------------------------------------------------DDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccC-------------------------------------------------CCCcEEEeccCCcCCCCCCCCCCC
Confidence 666330 34679999984433333321
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+..++|...-.+|+.+... .+.+.+||++.++ +..++..... .....+.|.||
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHPD 217 (1049)
T ss_pred cccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc-----------cceeeeeeCCC
Confidence 567778887766676655533 3478899999663 2233332211 22457999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+.+-+...... ...-.|-+||+ -......+.++.+...+-.+.|++.+..++.++..++ +++.++..
T Consensus 218 ~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~ 284 (1049)
T KOG0307|consen 218 HATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPN 284 (1049)
T ss_pred CceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCCCchhhhcccCCC---CeeEecCC
Confidence 88766642221 11234667774 1123334555667777888999999988888876664 57777877
Q ss_pred CC
Q 002164 490 SK 491 (958)
Q Consensus 490 ~~ 491 (958)
++
T Consensus 285 tg 286 (1049)
T KOG0307|consen 285 TG 286 (1049)
T ss_pred Cc
Confidence 75
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0062 Score=65.29 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..++.+.+.-...+|+-++.. ++|.+..+.++.. ..++...+ ..++-+.|||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 445555555567788877743 4788888775542 22222111 233668899988
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce--EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+.++.. ++..+.+.+||+ .|..+. ....+.....+++|||....|+.+...+ .+|+.+|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 877764 255778999996 554432 2245667788999999998888877666 46888887
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
........+..+.+... +.|+++|.+|+.+.
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333444443333 78999999888765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.067 Score=66.19 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=52.8
Q ss_pred eEEEEEcCCeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 315 QLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
.|-+++-+|+..-..+. +--..++|.|.|..||.+... +. ..+|-.+.-+|-.....+...
T Consensus 238 ~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~---------~~~VvFfErNGLrhgeF~l~~------- 300 (928)
T PF04762_consen 238 VIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PD---------RHDVVFFERNGLRHGEFTLRF------- 300 (928)
T ss_pred EEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc-CC---------CcEEEEEecCCcEeeeEecCC-------
Confidence 35555557777666665 445688999999999988742 21 235666666654433332211
Q ss_pred cccccccCcceeeeecCCCCceEEE
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
......+..+.|++|+.-|+++.
T Consensus 301 --~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 301 --DPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred --CCCCceeeEEEECCCCCEEEEEe
Confidence 00113457899999999999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0065 Score=60.85 Aligned_cols=114 Identities=19% Similarity=0.294 Sum_probs=74.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-e-ccCCCCccccccccceEEec--CCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-P-LFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~-lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~~ 265 (958)
.+..+.|-|++++|+-.. ..+|-+|+++.+..+ . +...........+.+-+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999865 457777777755431 1 11111111112255788997 88888876
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccccccCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~Sp 341 (958)
+.+.|+-+|+ +- +...|-.. ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3345666666 32 22233222 4578899999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
+-++++++..+ ++.+.+||...
T Consensus 225 nkq~~lvt~gD------------dgyvriWD~R~ 246 (370)
T KOG1007|consen 225 NKQHILVTCGD------------DGYVRIWDTRK 246 (370)
T ss_pred CceEEEEEcCC------------CccEEEEeccC
Confidence 99999888744 34899999873
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0068 Score=61.56 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=118.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC--eEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
..|.|+|+...- +...|- .+.+.++...|+|+-. +|+-.. .+.+|-+|++..=+...-......
T Consensus 63 etI~IYDm~k~~---qlg~ll--~HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~H~~ 128 (362)
T KOG0294|consen 63 ETIHIYDMRKRK---QLGILL--SHAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKAHKG 128 (362)
T ss_pred CcEEEEeccchh---hhccee--ccccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeeccccc
Confidence 479999984411 111221 1335788889988876 777744 366777777554222221111222
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
.+..++..|-|++-..+. +...|-.+|
T Consensus 129 ----~Vt~lsiHPS~KLALsVg-------------------------------------------------~D~~lr~WN 155 (362)
T KOG0294|consen 129 ----QVTDLSIHPSGKLALSVG-------------------------------------------------GDQVLRTWN 155 (362)
T ss_pred ----ccceeEecCCCceEEEEc-------------------------------------------------CCceeeeeh
Confidence 267888899997655440 223466777
Q ss_pred c-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCccccccc
Q 002164 321 L-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 321 ~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~ 397 (958)
+ .|+...+..- .....+.|+|.|.++++.... .|.+|.++... .+.+.. +
T Consensus 156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~-~------------ 208 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIEN-P------------ 208 (362)
T ss_pred hhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhc-c------------
Confidence 7 7754443333 334568999999998888733 77788776422 122211 1
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceee--ecCCceEEEEEe
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW--CDDSLALVYESW 475 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~--spDg~~l~~~~~ 475 (958)
.....+.|- ++..+++- ..+..+-.+|- .+......+..+..++-.+.+ .|++.+|+..+.
T Consensus 209 -~r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 209 -KRILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred -ccceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 001112221 22333331 22234556663 123334455666667766542 456777776655
Q ss_pred ccccceEEEEEcCCCC
Q 002164 476 YKTRRTRTWVISPGSK 491 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~ 491 (958)
++- ..+|.++.+..
T Consensus 272 DG~--I~vWd~~~~~k 285 (362)
T KOG0294|consen 272 DGF--IKVWDIDMETK 285 (362)
T ss_pred Cce--EEEEEcccccc
Confidence 443 78888887764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.012 Score=61.14 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=151.8
Q ss_pred CCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCC
Q 002164 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (958)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~ 175 (958)
-.+|+.+..++....++++..+ +++|+..+.+ +.+.+|+.++
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD---------------------------------g~~riWd~~G--- 134 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYD---------------------------------GTSRIWDLKG--- 134 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecC---------------------------------CeeEEEecCC---
Confidence 3566667777776678888888 7888877654 5778999854
Q ss_pred CCceeeeccCCCCCcccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee--eccCCCCccccccccceEEe
Q 002164 176 LGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV 252 (958)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~ws 252 (958)
....++.+++ +.+...+| .+|...-.|+.. ..+....||.++....... +...+.. +.+.++.-.
T Consensus 135 -k~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsa-----s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk----~~V~sVsv~ 202 (423)
T KOG0313|consen 135 -KSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSA-----SMDQTLRLWKWNVGENKVKALKVCRGHK----RSVDSVSVD 202 (423)
T ss_pred -ceEEEEecCC--cceeeeEEEecCCccceEEEe-----cCCceEEEEEecCchhhhhHHhHhcccc----cceeEEEec
Confidence 5566776643 55666666 344432234331 1334566777775543222 2222222 237788888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCC--cccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe---eee
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKR--DIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT---VKE 327 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~ 327 (958)
+||..+...+.+..-. +|+.+.. ..... ..+++.. .+- .....|. ...
T Consensus 203 ~sgtr~~SgS~D~~lk------------iWs~~~~~~~~~E~------~s~~rrk--------~~~-~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLK------------IWSVETDEEDELES------SSNRRRK--------KQK-REKEGGTRTPLVT 255 (423)
T ss_pred CCCCeEEeecccceee------------ecccCCCccccccc------cchhhhh--------hhh-hhhcccccCceEE
Confidence 9999888774433221 2220000 00000 0000000 000 0000121 122
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceee
Q 002164 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
|..+ ..+.++.|++ .. .+|+.. .+..|.+||+.+ +....++.. .....+.
T Consensus 256 l~GHt~~Vs~V~w~d-~~-v~yS~S------------wDHTIk~WDletg~~~~~~~~~--------------ksl~~i~ 307 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-AT-VIYSVS------------WDHTIKVWDLETGGLKSTLTTN--------------KSLNCIS 307 (423)
T ss_pred ecccccceeeEEEcC-CC-ceEeec------------ccceEEEEEeecccceeeeecC--------------cceeEee
Confidence 2223 6678899997 33 444431 245899999984 444444332 2234677
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC-CCc--eEEEeeccccCceeeecCCceEEEEEeccccceE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
.+|..+.|+.- +...++.++|. ..+ +.. .++..+...+..+.|+|-..+++.+...++. .+
T Consensus 308 ~~~~~~Ll~~g-------------ssdr~irl~DP--R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~k 371 (423)
T KOG0313|consen 308 YSPLSKLLASG-------------SSDRHIRLWDP--RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VK 371 (423)
T ss_pred cccccceeeec-------------CCCCceeecCC--CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EE
Confidence 88877776652 34456888884 433 222 3446677789999999999888877766653 66
Q ss_pred EEEEcCC
Q 002164 483 TWVISPG 489 (958)
Q Consensus 483 l~~~~~~ 489 (958)
||.+...
T Consensus 372 lWDvRS~ 378 (423)
T KOG0313|consen 372 LWDVRST 378 (423)
T ss_pred EEEeccC
Confidence 7766543
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=66.76 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCc
Q 002164 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (958)
Q Consensus 743 ~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (958)
-.+.-.|++++. =|.+..+.|.||||++|+.+..++|++|..+|+.+|++|....--++.+ +...| .+|
T Consensus 87 H~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyd-------dDv~y--nsP 155 (227)
T COG4947 87 HRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYD-------DDVYY--NSP 155 (227)
T ss_pred HHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccccc-------Cceee--cCh
Confidence 344455676653 2457889999999999999999999999999999999884421111111 11111 344
Q ss_pred ccccCCCC----------CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 823 FMSANKLK----------KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 823 ~~~~~~~~----------~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
.+++..+. .-+.+..|..|+.. .+..++-+.|..+.++..+.+..+..|-.
T Consensus 156 ~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 156 SDYLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hhhccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 44433332 34677788888774 46678888888877777766666655543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.056 Score=62.48 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCC---------chhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPP---------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~ 179 (958)
.++..+.|.|++-..+...++-... +..|.++..-+..+.+-.+-......+.+.+|.||+..+ + ...
T Consensus 52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r--~~i 128 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-R--KCI 128 (1202)
T ss_pred CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-C--ceE
Confidence 4688999999987666555442222 223333333334444444444444455567899999844 1 223
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR 232 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (958)
..+|++ .-.+...+|.|-.+.|+-.+- ...|.+||..|-..+
T Consensus 129 avltGH--nHYVMcAqFhptEDlIVSaSL---------DQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 129 AVLTGH--NHYVMCAQFHPTEDLIVSASL---------DQTVRVWDISGLRKK 170 (1202)
T ss_pred EEEecC--ceEEEeeccCCccceEEEecc---------cceEEEEeecchhcc
Confidence 344552 348899999998888887553 557888887764333
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=62.17 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=71.2
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---CCcccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002164 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (958)
++++|+|.|+||+.|.+++.++ . ++ +|+++|........ .+... ....+ ..+-..+.. .+-.-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-g-~~-aVLiNPAv~P~~~L~~~ig~~~-~y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-G-IR-QVIFNPNLFPEENMEGKIDRPE-EYADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-C-CC-EEEECCCCChHHHHHHHhCCCc-chhhh-hHHHHHHhh-----hcCcccEEE
Confidence 4699999999999999999998 3 44 45566765432110 01000 00101 111111111 011224589
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+..+.|++.+ +.++.+.|+.. .+..+.+|++|.|.. ..+.+..|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999988 77776666432 256789999999864 4566888999874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=65.58 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred cccceeecCCCCe---EEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKH---LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~---iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.-...+|+=|-.. ++.+ +...+.|+++|+.+++...-....+.. ++.+.+-|+.-.|+.+.
T Consensus 91 sfytcsw~yd~~~~~p~la~--------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~---- 154 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA--------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSA---- 154 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe--------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEe----
Confidence 4556788776542 2221 235789999999988765544434333 77888999875444431
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-----ccccccccC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPS 340 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-----~~~~~~~~S 340 (958)
+ ....|-+.++ ++.-.-+..+ +.+.+++||
T Consensus 155 ----------------S----------------------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 155 ----------------S----------------------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ----------------c----------------------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 0 1122444455 5544444433 567899999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
+||.+|+-... +..+-+|++..++.
T Consensus 191 ~~gd~i~ScGm-------------Dhslk~W~l~~~~f 215 (385)
T KOG1034|consen 191 LDGDRIASCGM-------------DHSLKLWRLNVKEF 215 (385)
T ss_pred CCCCeeeccCC-------------cceEEEEecChhHH
Confidence 99998876653 44899999885443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=66.58 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=85.0
Q ss_pred eceeEEEccCCCCCCceeeec---cC-CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQ---GF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt---~~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~ 238 (958)
..|||+|+++ .+.|. .. +........+.++.+.+|||-..+ ..++|+++|+.+-++.-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 3699999954 33332 12 111134455566677799995432 3778999998765444333333
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
.+. +..+++++||..||.++. +..-|-+
T Consensus 173 ~~~----lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KGP----LAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CCc----eeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 332 668999999999997621 1122444
Q ss_pred EEc-CCe-eeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 319 VSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 319 ~~~-~g~-~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
+.+ +|+ ...+-.+ ..+.+.+||||+++|..+++. .+|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-------------eTVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT-------------ETVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC-------------CeEEEEEecc
Confidence 555 552 3333333 567899999999999988854 3788887764
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=67.76 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEeccCCCCCCCCCCcc-----c
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPFGFQ-----N 805 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~~~~~-----~ 805 (958)
......=+..++.+|.++..+ +++-++||||||..++.++..+. +.+...|.+++.++.......-. .
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 344556678899999998766 59999999999999999988742 25788999988887543211000 0
Q ss_pred ccchhhhcHHHHHhcCcccccCCC--CCCEEEEeeC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002164 806 EDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (958)
Q Consensus 806 ~~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H 875 (958)
..+ +-.....|...-... -.++ ...+|-|.|. .|..|| ...++.+...++.....++-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 111111121111000 0122 3579999998 899998 8888888888887777888888876 578
Q ss_pred cCCCcccHHHHHHHHHHHHH
Q 002164 876 GYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~ 895 (958)
.-. .++ ..+.+.|.+||.
T Consensus 236 S~L-heN-~~V~~~I~~FLw 253 (255)
T PF06028_consen 236 SQL-HEN-PQVDKLIIQFLW 253 (255)
T ss_dssp CGG-GCC-HHHHHHHHHHHC
T ss_pred ccC-CCC-HHHHHHHHHHhc
Confidence 753 333 456677777763
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.1 Score=53.21 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=76.2
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
.+|...|. ..++...|||.+..|+.++ - ...|.++++...+.+........ +-.++|.++.+.+.
T Consensus 6 ~~l~npP~-d~IS~v~f~~~~~~LLvss-------W--DgslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~~~~ 70 (323)
T KOG1036|consen 6 FELENPPE-DGISSVKFSPSSSDLLVSS-------W--DGSLRLYDVPANSLKLKFKHGAP-----LLDCAFADESTIVT 70 (323)
T ss_pred cccCCCCh-hceeeEEEcCcCCcEEEEe-------c--cCcEEEEeccchhhhhheecCCc-----eeeeeccCCceEEE
Confidence 34443332 2689999999999998866 2 34555666666565555444433 56788887665443
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSL 337 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~ 337 (958)
-. -..+|-++|+ +|+..++..+ ..+..+
T Consensus 71 G~--------------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci 100 (323)
T KOG1036|consen 71 GG--------------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCI 100 (323)
T ss_pred ec--------------------------------------------------cCceEEEEEecCCcceeeccCCCceEEE
Confidence 22 2356889999 8887777766 777777
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
..++--..++..+ +++.|.+||...
T Consensus 101 ~~~~~~~~vIsgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 101 EYSYEVGCVISGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred EeeccCCeEEEcc-------------cCccEEEEeccc
Confidence 7776333333332 456899999875
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0059 Score=71.84 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=52.1
Q ss_pred ceeEEEccCCCCCCceeee-ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC--ceeeccCCCCc
Q 002164 164 GIGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDI 240 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g--~~~~lt~~~~~ 240 (958)
+|.+.|. || ...+.+ .. ....+.+|.|||||++|||+... ..-.+...||+.++.+. ...+| +-.
T Consensus 330 ~L~~~D~--dG--~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~---e~~~g~s~vYv~~L~t~~~~~vkl---~ve 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVEIE--DTISVYHPDISPDGKKVAFCTGI---EGLPGKSSVYVRNLNASGSGLVKL---PVE 397 (912)
T ss_pred eEEEEec--CC--CCceEEEec--CCCceecCcCCCCCCEEEEEEee---cCCCCCceEEEEehhccCCCceEe---ecc
Confidence 6888887 55 555555 32 33578999999999999994432 22235778999999863 33444 211
Q ss_pred cccccccceEEe--cCC-eEEEEE
Q 002164 241 YLNAIFDNFVWV--NNS-TLLVCT 261 (958)
Q Consensus 241 ~~~~~~~~~~ws--pDG-~~l~~~ 261 (958)
. ..-|+|- .+| ..|+|+
T Consensus 398 ~----aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 N----AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred c----ccccceEecCCCCeEEEEE
Confidence 1 2246665 666 566666
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.053 Score=55.22 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.++.+.|||.+..|+.++.+ +.|.++++.. ...+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~----~~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPA----NSLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccc----hhhhhh--eecCC
Confidence 36789999999999888775 5788998854 222222 33445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
.+..-.|.+ -.++++ ++-...|.++|+.+++..++-.+... +..+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 677778875 446666 33467899999999988877655543 55566664
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0056 Score=66.01 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC--C---CCC-----
Q 002164 735 FVEQLVACAEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--T---PFG----- 802 (958)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~---~~~----- 802 (958)
++--..-|++-|+.++.++-.- +.-++.++|+|+||++|..++.-.|..|.+++-.++.....+ . ..+
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 3334467888888888886322 234899999999999999999999999999998776432111 0 000
Q ss_pred ----c--------ccccchhhhcH---------HHHHhcCcc--cc---cCCC-CCCE-EEEeeCCCCCCCCChHHHHHH
Q 002164 803 ----F--------QNEDRTLWEAT---------STYVEMSPF--MS---ANKL-KKPI-LLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 803 ----~--------~~~~~~~~~~~---------~~~~~~sp~--~~---~~~~-~~P~-Lii~G~~D~~v~~~~~~~~~~ 854 (958)
+ .....++|... +.+.-.+.+ .+ ..+. +.|. ...|+..|..+| .++-.++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~l 315 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEEL 315 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHHH
Confidence 0 00113445321 111111111 11 1112 3344 567999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeC
Q 002164 855 FNALKGHGALCRLVILP 871 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p 871 (958)
++.++..|-++++..+.
T Consensus 316 ~~~l~~lgfda~l~lIk 332 (403)
T PF11144_consen 316 YEILKNLGFDATLHLIK 332 (403)
T ss_pred HHHHHHcCCCeEEEEec
Confidence 99999999999999884
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.28 Score=53.30 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=41.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec---cCCCCccccccccceEEecCCeEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
..+....|.|-+..|..+- |..+||.|+..+|...+- ....+. ..+..+.|.++|+.|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 4577889999888887755 478999999998765432 222221 2256788888887665
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0038 Score=61.35 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=141.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC-
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~- 188 (958)
.+..++||+.-..++++... + +.|.||++.. +...|..+.+.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~G----------------------D----------GSLrl~d~~~-----~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASG----------------------D----------GSLRLFDLTM-----PSKPIHKFKEHK 104 (311)
T ss_pred ceeEeeecCCCcceEEEEec----------------------C----------ceEEEeccCC-----CCcchhHHHhhh
Confidence 46678899988877776552 2 4788998632 23333323333
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC-CeEEEEEecCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN-STLLVCTIPLLRG 267 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD-G~~l~~~~~~~~~ 267 (958)
..+...-|++--+++..++. -++...|| +..-+...+...+... .+...+|||- +..+++++
T Consensus 105 ~EV~Svdwn~~~r~~~ltsS------WD~TiKLW--~~~r~~Sv~Tf~gh~~----~Iy~a~~sp~~~nlfas~S----- 167 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSS------WDGTIKLW--DPNRPNSVQTFNGHNS----CIYQAAFSPHIPNLFASAS----- 167 (311)
T ss_pred hheEEeccccccceeEEeec------cCCceEee--cCCCCcceEeecCCcc----EEEEEecCCCCCCeEEEcc-----
Confidence 37889999997777776553 23444455 4443333333222222 2668899975 45556541
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
.+ +.-.||-+...|+...|..+ ..+....||.=...+
T Consensus 168 ----------------gd--------------------------~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 168 ----------------GD--------------------------GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred ----------------CC--------------------------ceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 11 33446666656655555544 577888999988888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... ++.|+.||+..-. .+|.. .++....++.+.|||--..++..
T Consensus 206 l~Tg~v------------d~~vr~wDir~~r-~pl~e----------L~gh~~AVRkvk~Sph~~~lLaS---------- 252 (311)
T KOG0277|consen 206 LATGGV------------DNLVRGWDIRNLR-TPLFE----------LNGHGLAVRKVKFSPHHASLLAS---------- 252 (311)
T ss_pred EEecCC------------CceEEEEehhhcc-cccee----------ecCCceEEEEEecCcchhhHhhh----------
Confidence 888743 4489999987321 11111 12333567899999987776653
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec-CCceEEEEEeccccceEEEEEcC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.+.+..+.+|+.+..+ +..+....+..-+.++.||+ ++.+++-..+++. +|++++
T Consensus 253 --asYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~----l~Vw~p 308 (311)
T KOG0277|consen 253 --ASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL----LYVWNP 308 (311)
T ss_pred --ccccceEEecccccch-hhhhhhhccceEEeccccccccCceeeecccccc----eeeecc
Confidence 1334456677741111 12222223333456677877 4667777777664 555543
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=84.65 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC-CCC---CC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIG---EG 727 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~-~~G---~G 727 (958)
|+..+|.|..-..+ . +||+|++|||.+..+.. ..+... .....+..+..+|+.++||- ..| .|
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~--------~~~~~~--~~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSA--------SSFEII--SPAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeeccc--------cchhhc--CchhccccCCEEEEEecccceeceeeecC
Confidence 66788888753221 2 89999999986543321 111000 11223345577788777652 223 22
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccC
Q 002164 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (958)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (958)
.+.. .+.....|+..|++|+.++ ---||++|.|+|||+||..+..+... ...+|..+|..+|.
T Consensus 164 d~~~---~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAA---PGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCC---CCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 2222 2344566999999999985 22699999999999999998776652 22578888888775
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0028 Score=69.46 Aligned_cols=270 Identities=14% Similarity=0.116 Sum_probs=138.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+...+-.|-|.||+-.+ ..+.|.+|.+.||...+.+...+. +..++|.|.++.=+.+.......
T Consensus 401 g~Vr~iSvdp~G~wlasGs---------dDGtvriWEi~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGS---------DDGTVRIWEIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CeEEEEEecCCcceeeecC---------CCCcEEEEEeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCce
Confidence 4577778889999999843 466777888889988776655553 78999998875433221111111
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE----c-CCeeeecCCCccccccccCCCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSPDE 343 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~----~-~g~~~~l~~~~~~~~~~~SpDG 343 (958)
....+ -.|.++.... -.+++....+...-+ .....|.-. + .|-...|..+..+..+.|+-+|
T Consensus 467 ~ivnp--~~G~~~e~~~---------t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 467 LIVNP--IFGDRLEVGP---------TKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred EEeCc--cccchhhhcc---------hhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 00000 0000000000 000000000000000 001122222 1 1223344455778899999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.+|+.+.... ....+.|+++.....+ .|.. ...+-+..+.|.|-..++++.
T Consensus 534 DYlatV~~~~----------~~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~FHPs~p~lfVa------- 584 (733)
T KOG0650|consen 534 DYLATVMPDS----------GNKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKFHPSKPYLFVA------- 584 (733)
T ss_pred ceEEEeccCC----------CcceEEEEeccccccc----Cchh--------hcCCceeEEEecCCCceEEEE-------
Confidence 9999987432 2346778877632211 1111 111234567888887777663
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
....|.++|+ ....-++.|..+...+..++.+|.|..|+..+..+ ++..+|++-+. ++........
T Consensus 585 -------Tq~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldlss-kPyk~lr~H~ 650 (733)
T KOG0650|consen 585 -------TQRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLSS-KPYKTLRLHE 650 (733)
T ss_pred -------eccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccCc-chhHHhhhhh
Confidence 2335777885 23223344444555677889999999988876443 35555555431 2222111111
Q ss_pred ---ccccCCCCCCce-EeccCCceEEEEe
Q 002164 504 ---EDVYSDPGSPMM-RRTSTGTYVIAKI 528 (958)
Q Consensus 504 ---~~~~~~~~~~~~-~~spdG~~l~~~~ 528 (958)
..+.....-|.+ +-|+||..++|-.
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEee
Confidence 111111222333 4578888887765
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.016 Score=62.24 Aligned_cols=213 Identities=19% Similarity=0.158 Sum_probs=123.4
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+..++.. ++. -.-.||+|..- +.+.-+||++||.... -.+...-....+.|.++|++.+...
T Consensus 63 e~~~L~~-~~~-~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit 124 (310)
T PF12048_consen 63 EVQWLQA-GEE-RFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSIT 124 (310)
T ss_pred hcEEeec-CCE-EEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEec
Confidence 3444544 333 34467788642 2246789999994211 1122222345567889999999832
Q ss_pred CCCCCC---------------CC--Ccc---------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 002164 720 TTPIIG---------------EG--DEE---------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (958)
Q Consensus 720 ~~~~~G---------------~G--~~~---------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S 767 (958)
..+-.+ -+ ... ....+......-+.+++.++.+++. .+|+|+||+
T Consensus 125 ~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G 201 (310)
T PF12048_consen 125 LPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHG 201 (310)
T ss_pred CCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeC
Confidence 222000 00 000 0112234556667788888887763 359999999
Q ss_pred hHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 768 YGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 768 ~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
.|+++++.++...+. .+.++|.+++...... ........+.+++.|+|=|++.. ....
T Consensus 202 ~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~-------------------~n~~l~~~la~l~iPvLDi~~~~-~~~~- 260 (310)
T PF12048_consen 202 TGAGWAARYLAEKPPPMPDALVLINAYWPQPD-------------------RNPALAEQLAQLKIPVLDIYSAD-NPAS- 260 (310)
T ss_pred hhHHHHHHHHhcCCCcccCeEEEEeCCCCcch-------------------hhhhHHHHhhccCCCEEEEecCC-ChHH-
Confidence 999999999998753 4789999887422100 00122244567889999888776 3221
Q ss_pred ChHHHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 847 LTMQSDRFFNALKG-HGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 847 ~~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
...+.+-....+. ....++-+.+++..|.....+ ..+.++|..||.++
T Consensus 261 -~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~~--~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 261 -QQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSGWQ--EQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHHHHHhccCCCceeEecCCCCCChhhHH--HHHHHHHHHHHHhh
Confidence 2222222222222 234567777777777653222 23788999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.026 Score=58.26 Aligned_cols=182 Identities=11% Similarity=0.064 Sum_probs=116.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+.+..+.+-|-.+|++. +.....+-+||+++|+...-..+.-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~----~vr~vavS~rHpYlFs~g------ 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE----TVRGVAVSKRHPYLFSAG------ 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh----eeeeeeecccCceEEEec------
Confidence 57888899998888776 34477889999999987543222221 267889998888888661
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~ 345 (958)
...++--+|+ ..+. +..... ..+..++..|--..
T Consensus 213 -------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 213 -------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred -------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 1234556666 3332 333333 66777788887776
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+..+. +..+.+||+.++.. ..+..+. ..+.++.+.|-...++-
T Consensus 250 l~t~gr-------------Dst~RvWDiRtr~~V~~l~GH~-------------~~V~~V~~~~~dpqvit--------- 294 (460)
T KOG0285|consen 250 LVTGGR-------------DSTIRVWDIRTRASVHVLSGHT-------------NPVASVMCQPTDPQVIT--------- 294 (460)
T ss_pred EEecCC-------------cceEEEeeecccceEEEecCCC-------------CcceeEEeecCCCceEE---------
Confidence 665542 34899999986543 3333222 22234555553333333
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
.+.+..|.+||+ ..|+....++.+.-.++.++-.|+-..++.+
T Consensus 295 ----~S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 295 ----GSHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ----ecCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 255667899997 6777788888888888888888876544433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.013 Score=62.48 Aligned_cols=227 Identities=11% Similarity=0.216 Sum_probs=128.2
Q ss_pred eceeEEEccCCCCCCc-------eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--Cc---
Q 002164 163 TGIGIHQLFPDGKLGQ-------EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GK--- 230 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-------~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~--- 230 (958)
++++|++......... ..+|+++.. .....+|++.-.--+.+. .....|-+||+.. .+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~--------~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSG--------SDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeec--------cCCCcEEEEeccccccCCcc
Confidence 5889998855432221 225666543 346689998655443322 2234455555443 21
Q ss_pred --eeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHH
Q 002164 231 --ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLF 308 (958)
Q Consensus 231 --~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~ 308 (958)
++.++..... .+..++|.+-.+.+|.+..
T Consensus 217 ~~p~~~~~~h~~----~VeDV~~h~~h~~lF~sv~--------------------------------------------- 247 (422)
T KOG0264|consen 217 VDPKTIFSGHED----VVEDVAWHPLHEDLFGSVG--------------------------------------------- 247 (422)
T ss_pred ccceEEeecCCc----ceehhhccccchhhheeec---------------------------------------------
Confidence 1222222222 2778999987766664411
Q ss_pred HHhhcceEEEEEc-CC--eeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc
Q 002164 309 DYYATTQLVLVSL-DG--TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (958)
Q Consensus 309 ~~~~~~~l~~~~~-~g--~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~ 383 (958)
..+.|.+.|+ ++ +...... . +.+..++|+|=+..|+.+... ++++.+||+..=.. .+..
T Consensus 248 ---dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~------------D~tV~LwDlRnL~~-~lh~ 311 (422)
T KOG0264|consen 248 ---DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA------------DKTVALWDLRNLNK-PLHT 311 (422)
T ss_pred ---CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC------------CCcEEEeechhccc-Ccee
Confidence 1234666666 43 1121111 1 677889999977777766532 45899999873221 2222
Q ss_pred CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC---------CCceEEEe-
Q 002164 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG---------EGPEILHK- 453 (958)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g---------~~~~~l~~- 453 (958)
+.+....+..+.|||+-..++... +..+.+.+||+..... +.+..|..
T Consensus 312 ----------~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 312 ----------FEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ----------ccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 223335567899999999887741 3345677888622211 11233322
Q ss_pred --eccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 454 --LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 454 --~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+...+..+.|.|.--+++.+...++ ..+||.+.
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 2345677899999888777665553 37788764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.21 Score=58.08 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=132.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++-.++|.|---||+.+--. +.|.+||-.= |++ ..+.-. +.+
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~tl--i~rFde--HdG 52 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-GTL--IDRFDE--HDG 52 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-hhH--Hhhhhc--cCC
Confidence 45678899999888876543 3566776522 111 111211 335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|.|++- +|++ +.....|-+|+-+.... +...-+ . -..+..+.|.+.=-||+.++
T Consensus 53 pVRgv~FH~~qp--lFVS-------GGDDykIkVWnYk~rrc--lftL~G-H-lDYVRt~~FHheyPWIlSAS------- 112 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVS-------GGDDYKIKVWNYKTRRC--LFTLLG-H-LDYVRTVFFHHEYPWILSAS------- 112 (1202)
T ss_pred ccceeeecCCCC--eEEe-------cCCccEEEEEeccccee--hhhhcc-c-cceeEEeeccCCCceEEEcc-------
Confidence 788899999775 4555 22355566666544322 211111 0 01155666777767777551
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
+ ...|.+++- ++ ....++.+ -.+....|.|-...|
T Consensus 113 --------------D----------------------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 113 --------------D----------------------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred --------------C----------------------------CCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 1 122444444 44 45566665 667788899988888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc---------C-c-------ccccccccCcceeeeecC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED---------I-P-------IAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~---------~-p-------~~~~~~~~~~~~~~~spD 409 (958)
+..+. +++|.+||+.|=..+........+. . + .-..++.-|+.-++|.|-
T Consensus 151 VSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 151 VSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 77763 4699999998643333222211100 0 0 012222333444555553
Q ss_pred CCCceEEEEeccCCCcccccccCC--eEEEEeCCCCCCCCceEE---EeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
-..|+- . +.+. .+|+++ ++ +.-.+ ..+-..+.++.|.|....|+..++++. .++|
T Consensus 218 lpliVS---G----------~DDRqVKlWrmn----et-KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVw 277 (1202)
T KOG0292|consen 218 LPLIVS---G----------ADDRQVKLWRMN----ET-KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVW 277 (1202)
T ss_pred cceEEe---c----------CCcceeeEEEec----cc-cceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEE
Confidence 332222 1 1122 256655 22 22222 345567888999998777776665554 6666
Q ss_pred EEcCC
Q 002164 485 VISPG 489 (958)
Q Consensus 485 ~~~~~ 489 (958)
.++-.
T Consensus 278 Dm~kR 282 (1202)
T KOG0292|consen 278 DMTKR 282 (1202)
T ss_pred ecccc
Confidence 65533
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00042 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~ 223 (958)
.....|+|||||++|+|++.+. +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998733 147778885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0051 Score=63.56 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=48.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-- 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-- 780 (958)
.+++.+...++.|..+. ..|.+.........+.+..+..+.| ++.. ...++.|+|||+||.+|..+|.+-
T Consensus 18 ~la~~l~~~~~~v~~i~---~~~~~~~~~~~~si~~la~~y~~~I---~~~~--~~gp~~L~G~S~Gg~lA~E~A~~Le~ 89 (229)
T PF00975_consen 18 PLARALPDDVIGVYGIE---YPGRGDDEPPPDSIEELASRYAEAI---RARQ--PEGPYVLAGWSFGGILAFEMARQLEE 89 (229)
T ss_dssp HHHHHHTTTEEEEEEEC---STTSCTTSHEESSHHHHHHHHHHHH---HHHT--SSSSEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEEe---cCCCCCCCCCCCCHHHHHHHHHHHh---hhhC--CCCCeeehccCccHHHHHHHHHHHHH
Confidence 34444444446676633 3344322233344556665555544 3321 113899999999999999988742
Q ss_pred -CCceeEEEEeccC
Q 002164 781 -PHLFCCGIARSGA 793 (958)
Q Consensus 781 -p~~~~a~v~~~~~ 793 (958)
...+..++++.+.
T Consensus 90 ~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 90 AGEEVSRLILIDSP 103 (229)
T ss_dssp TT-SESEEEEESCS
T ss_pred hhhccCceEEecCC
Confidence 2447778777743
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.17 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=26.7
Q ss_pred cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 328 IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 328 l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
|.-+.....+.+||||++++.+... ...+.++|++.
T Consensus 317 IPVGKsPHGV~vSPDGkylyVankl------------S~tVSVIDv~k 352 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIANGKL------------SPTVTVIDVRK 352 (635)
T ss_pred EECCCCccceEECCCCCEEEEeCCC------------CCcEEEEEChh
Confidence 3333556788999999999988744 34788888874
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0047 Score=64.09 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=79.2
Q ss_pred eeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 367 QVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 367 ~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
.|||||+..-+ ...|...+.. ..+...++.++++.+++|-.. ...+.|+++|+ .+-
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n----------~~gl~AlS~n~~n~ylAyp~s-----------~t~GdV~l~d~--~nl 163 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPN----------PKGLCALSPNNANCYLAYPGS-----------TTSGDVVLFDT--INL 163 (391)
T ss_pred cEEEEecccceeehhhhccCCC----------ccceEeeccCCCCceEEecCC-----------CCCceEEEEEc--ccc
Confidence 79999997532 2222222111 123444555566668888311 12457899986 333
Q ss_pred CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC--CccccCCCCCCceEeccCCce
Q 002164 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTY 523 (958)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdG~~ 523 (958)
.....+..+++.+..++|++||..|+.+++.++ -|.++....+ +....+.+. ...+|+ ++|+||+++
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGT---VIRVf~v~~G--~kl~eFRRG~~~~~IyS------L~Fs~ds~~ 232 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGT---VIRVFSVPEG--QKLYEFRRGTYPVSIYS------LSFSPDSQF 232 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCce---EEEEEEcCCc--cEeeeeeCCceeeEEEE------EEECCCCCe
Confidence 345566778888889999999999998876664 4555665554 323333332 233455 889999999
Q ss_pred EEEEe
Q 002164 524 VIAKI 528 (958)
Q Consensus 524 l~~~~ 528 (958)
|...+
T Consensus 233 L~~sS 237 (391)
T KOG2110|consen 233 LAASS 237 (391)
T ss_pred EEEec
Confidence 88776
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0034 Score=64.73 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCccccccccc
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+...+.+.-+ ..+..+.|+|--..|+.+.. .++.|.|||+..+. .+.+... .
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~------------sDrsIvLyD~R~~~Pl~KVi~~--------------m 230 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCA------------SDRSIVLYDLRQASPLKKVILT--------------M 230 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeec------------cCCceEEEecccCCccceeeee--------------c
Confidence 4444555544 56778889998777766552 24489999998443 3333221 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-EeeccccCceeeecCCceEEEEEeccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
....+.|+| ....|.+ .+++..+|.+|.-.+ ..+..+ .++-..+..+.|||-|+.++..+-+.+
T Consensus 231 RTN~IswnP--eafnF~~-----------a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 231 RTNTICWNP--EAFNFVA-----------ANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cccceecCc--cccceee-----------ccccccceehhhhhh--cccchhhcccceeEEEeccCCCcchhccccccce
Confidence 224689999 3333421 244557898885111 122222 233345678999999999998876665
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+||-++ .+. ....-.......++. +.||-|.++|+.++
T Consensus 296 --IRIf~~~--~~~-SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 296 --IRIFPVN--HGH-SRDIYHTKRMQHVFC------VKYSMDSKYIISGS 334 (433)
T ss_pred --EEEeecC--CCc-chhhhhHhhhheeeE------EEEeccccEEEecC
Confidence 5565544 321 111111222233333 78999999998776
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=73.15 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCCceecCCCCEEEEEecC---------CCCCchhc---ccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRR---------ALPPLEEL---ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
...++.+|+-|.+....... +......+ ..+...+.++.+|.-.......+.++-+..|+.+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~----- 524 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK----- 524 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-----
Confidence 56788999999987664432 11111122 12233444555554443333334445677777733
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
...+..+.-+..+..+..+-....++.. -+...|.++|+.+-+..+...+...+ +..+.|||||+|
T Consensus 525 -k~l~~~l~l~~~~~~iv~hr~s~l~a~~---------~ddf~I~vvD~~t~kvvR~f~gh~nr----itd~~FS~DgrW 590 (910)
T KOG1539|consen 525 -KVLKKSLRLGSSITGIVYHRVSDLLAIA---------LDDFSIRVVDVVTRKVVREFWGHGNR----ITDMTFSPDGRW 590 (910)
T ss_pred -cceeeeeccCCCcceeeeeehhhhhhhh---------cCceeEEEEEchhhhhhHHhhccccc----eeeeEeCCCCcE
Confidence 1122222222244555555555555543 24778999998887666555544444 789999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCcccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~ 335 (958)
|+.+. ..+.|.++|+ +|..- -+.-+....
T Consensus 591 lisas-------------------------------------------------mD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 591 LISAS-------------------------------------------------MDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred EEEee-------------------------------------------------cCCcEEEEeccCcceeeeEecCCcce
Confidence 99771 2345778888 77432 222224567
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
++.+||+|.+||.+..+. ..|++|.-.
T Consensus 622 sls~SPngD~LAT~Hvd~------------~gIylWsNk 648 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQ------------NGIYLWSNK 648 (910)
T ss_pred eeEECCCCCEEEEEEecC------------ceEEEEEch
Confidence 889999999999988552 378888543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=75.46 Aligned_cols=170 Identities=12% Similarity=0.148 Sum_probs=95.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+....|+|.+.-++.+... .++|+|||++.-+ ...+.. . + .....+..++|...-+
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~---~-~-----~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG---S-Q-----APPSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC---C-C-----CCcccceEeccchhhh
Confidence 677788999988844433322 3599999998411 111110 0 0 0113455677776555
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCce-EEEEEeccc-cceEEEEEc
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLA-LVYESWYKT-RRTRTWVIS 487 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~-l~~~~~~~~-~~~~l~~~~ 487 (958)
.|+.. .+..+...+||+ ...+....+.... ..+..+.|.||... |+.+++++. ....+|.+.
T Consensus 175 hILAS------------~s~sg~~~iWDl--r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 175 HILAS------------GSPSGRAVIWDL--RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred HHhhc------------cCCCCCceeccc--cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 55442 134556777886 2222333443332 34678999999755 444444443 335556544
Q ss_pred CCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEE
Q 002164 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~ 566 (958)
-.+ .+..+...+...+.+ ++|.+.+..++.... ...++..||.++|++.-
T Consensus 241 ~as---sP~k~~~~H~~Gils------lsWc~~D~~lllSsg--------------------kD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 241 FAS---SPLKILEGHQRGILS------LSWCPQDPRLLLSSG--------------------KDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ccC---Cchhhhcccccceee------eccCCCCchhhhccc--------------------CCCCeeEecCCCceEee
Confidence 433 334444444444444 789998866555541 12368899999987643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.04 Score=57.54 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEe-cCCe-E-EEEEec
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNST-L-LVCTIP 263 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG~-~-l~~~~~ 263 (958)
+...++.+.-+ +++|+... +.+.+.+|+.+|....++....+. +..++|- +|.. . ++.+
T Consensus 104 hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsa-- 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSA-- 165 (423)
T ss_pred chhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEe--
Confidence 33466666666 78998844 466788889887766666554443 6778886 3332 2 3322
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC--ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP--AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~--~~~~~~~ 338 (958)
+.+ ..-.||.++. .-. ......+ ..+.+++
T Consensus 166 -------------------s~D--------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 166 -------------------SMD--------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred -------------------cCC--------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 110 2344666665 221 1222223 6678888
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccC------------CccccCcc-cccccccCcceee
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL------------PLAEDIPI-AFNSVRKGMRSIN 405 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~------------~~~~~~p~-~~~~~~~~~~~~~ 405 (958)
..+||.++.-.+- +..+-+|+........+... ......|. ...++...+.++.
T Consensus 201 v~~sgtr~~SgS~-------------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 201 VDSSGTRFCSGSW-------------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ecCCCCeEEeecc-------------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 8999999887763 34777887332211111110 01111222 3344556678899
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
|++ ...+|. .+-+..|.+||+ ..|+....++ .+.....+..+|..+.|+..+.+. .|.+
T Consensus 268 w~d--~~v~yS------------~SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr----~irl 326 (423)
T KOG0313|consen 268 WSD--ATVIYS------------VSWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR----HIRL 326 (423)
T ss_pred EcC--CCceEe------------ecccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC----ceee
Confidence 988 445553 234556889997 2344444443 334456688899888777665332 3666
Q ss_pred EcCCCCCCCcE-EEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 486 ISPGSKDVAPR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 486 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.|+..+.++.. +.+-.+...+.+ +.|+|...+++...
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 67776644432 334444445444 78999988776665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.071 Score=53.82 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=68.4
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..-.|||||++|+.+.++-. ...+-|-+||.+.+ ..++-..+.. ..++..+.|.+||+.
T Consensus 115 fyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~~-fqrvgE~~t~----------GiGpHev~lm~DGrt 175 (366)
T COG3490 115 FYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDAREG-FQRVGEFSTH----------GIGPHEVTLMADGRT 175 (366)
T ss_pred eecccccCCCCcEEEeecCCCC--------CCCceEEEEecccc-cceecccccC----------CcCcceeEEecCCcE
Confidence 3456689999999998876531 12456888888733 3333333222 246678999999999
Q ss_pred ceEE---EEec-cCCCccccc-ccCCeEEEEeCCCCCCCCceEEE----eeccccCceeeecCCceEEEEEeccc
Q 002164 413 TLYW---AETQ-DGGDAKVEV-TPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 413 l~~~---~~~~-~~~~~~~~~-~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++.. ++.. +-+....+. +..-.+.+++. .+|.-.++.+ .....++.+...+||+ |+|.+.+.+
T Consensus 176 lvvanGGIethpdfgR~~lNldsMePSlvlld~--atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G 247 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDA--ATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG 247 (366)
T ss_pred EEEeCCceecccccCccccchhhcCccEEEEec--cccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC
Confidence 9874 1111 111111111 12234666663 3454333332 1223455567777875 566665444
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.028 Score=66.47 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=81.2
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
.+|+|.... .++|.+.|.+|...+.+ .... ..+-.+.|||||+.|+|-+....
T Consensus 319 tkiAfv~~~------------~~~L~~~D~dG~n~~~ve~~~~-------------~~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDV------------TGNLAYIDYTKGASRAVEIEDT-------------ISVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcC------------CCeEEEEecCCCCceEEEecCC-------------CceecCcCCCCCCEEEEEEeecC-
Confidence 367777632 23899999998887776 3322 22356889999999999433221
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce-EEEEEecccc-------ceEEEEEcCCCCC-C
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKTR-------RTRTWVISPGSKD-V 493 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~~-------~~~l~~~~~~~~~-~ 493 (958)
+..+..||+.++. .++..+.+|.-.+..+..-...+.|.. |+|.++.+++ ....|++....|+ +
T Consensus 373 ------~~g~s~vYv~~L~-t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNLN-ASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEehh-ccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 1235569999972 345555666555555555555677654 7787743331 2457888876553 5
Q ss_pred CcEEEeccCCcc
Q 002164 494 APRILFDRSSED 505 (958)
Q Consensus 494 ~~~~~~~~~~~~ 505 (958)
+++.+++.....
T Consensus 446 ~p~kl~dga~hg 457 (912)
T TIGR02171 446 TPKKLFDGAYHG 457 (912)
T ss_pred Cchhhhcccccc
Confidence 677777776544
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.13 Score=58.60 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce--eeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~--~~lt~~~~ 187 (958)
.+...++|||++.+|++.+. .++.. -+|.+.++.+ +.. ..++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~------y~lr~kdL~t----g~~~~d~i~---- 173 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQ------YTLRFKDLAT----GEELPDEIT---- 173 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccE------EEEEEEeccc----ccccchhhc----
Confidence 35678899999999999873 33333 3788999865 332 1121
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--CceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.....+|.+|++.+.|++..+ ......||...+.+ .+.+.+...++..+ +-++.=|...++|++.
T Consensus 174 -~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 174 -NTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred -ccccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 1356789999999999988533 23456788888776 44454554444321 2244445566666655
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.037 Score=58.02 Aligned_cols=138 Identities=10% Similarity=0.024 Sum_probs=79.9
Q ss_pred cceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEec-cCCcccc
Q 002164 313 TTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAED 389 (958)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~-~~~~~~~ 389 (958)
...+.++++ +|+ ...|..++.+.++.|+-||..|+.+..+ .+|.+||..++++..-. .+.+
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~v~e~~~heG--- 216 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTVVSEGVAHEG--- 216 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcEeeecccccC---
Confidence 456778888 774 4456644888999999999999988744 48999999866543221 1111
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCC
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDS 467 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg 467 (958)
.......|-.||+ ++++-+. .-...++-+|+.++++ ++..+.. ....+-.|.|.||.
T Consensus 217 ---------~k~~Raifl~~g~--i~tTGfs--------r~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 217 ---------AKPARAIFLASGK--IFTTGFS--------RMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred ---------CCcceeEEeccCc--eeeeccc--------cccccceeccCccccc--CcceeEEeccCCceEEeeecCCC
Confidence 1224567888887 3332211 1123356777753332 2222222 22234457787776
Q ss_pred ceEEEEEeccccceEEEEEcC
Q 002164 468 LALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+.| |....+..+.+.|-+..
T Consensus 276 ~iv-Yl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 276 SIV-YLCGKGDSSIRYFEITN 295 (472)
T ss_pred CEE-EEEecCCcceEEEEecC
Confidence 654 44444444455565543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=63.11 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=88.5
Q ss_pred ceEEEEEc-CC-eeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc
Q 002164 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~ 389 (958)
+.|.+..+ ++ +...++.+ ..+..+.+||-.|+++.+..+ .+.+.+||+.|..+.--.. .
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~~~--~--- 205 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFHAS--E--- 205 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc------------CCeEEEEeccCCCcccchh--h---
Confidence 34666666 55 34455544 445678899999998888754 3589999999754322111 0
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
.+..-.+++.|||-...|++. ++.+..|+++|. .......-...+.....++|+++|.+
T Consensus 206 ------~HsAP~~gicfspsne~l~vs------------VG~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 206 ------AHSAPCRGICFSPSNEALLVS------------VGYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred ------hccCCcCcceecCCccceEEE------------ecccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 111223679999999888775 355668999995 32222222234556778999999988
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 002164 470 LVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
|+.... +.+|+.+|+.+.
T Consensus 265 L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGNS----KGELIAYDMRST 282 (673)
T ss_pred EEeecC----CceEEEEecccC
Confidence 877642 256999998875
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0043 Score=70.19 Aligned_cols=183 Identities=12% Similarity=0.105 Sum_probs=110.6
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|-+||++-. ....+++.+.+.. .+....|++---.|+.+.. ...-|-.||+...+....+....+.
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--------QDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS--------QDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC--------CCceEEEEeeecccccccccccchh
Confidence 57889999432 2234444344333 7888899987778877543 3445566666655555555443332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+.+++|+|--...|++..+. +.-|+|-+..
T Consensus 179 ----iRDV~fsp~~~~~F~s~~ds----------------------------------------------G~lqlWDlRq 208 (839)
T KOG0269|consen 179 ----IRDVKFSPGYGNKFASIHDS----------------------------------------------GYLQLWDLRQ 208 (839)
T ss_pred ----hhceeeccCCCceEEEecCC----------------------------------------------ceEEEeeccC
Confidence 77999997554444441110 2334444443
Q ss_pred -CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+.-..+++.+ +.+.-..|+|++.+||.... ++.+.||+..+...+.+..... . .
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------------DK~vkiWd~t~~~~~~~~tInT--i---------a 264 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------------DKMVKIWDMTDSRAKPKHTINT--I---------A 264 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCC-------------CccEEEEeccCCCccceeEEee--c---------c
Confidence 3345566666 77889999999999997763 3489999998655444322110 0 1
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
-+..+.|.|+-+..+-.... .....|++||+
T Consensus 265 pv~rVkWRP~~~~hLAtcsm----------v~dtsV~VWDv 295 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATCSM----------VVDTSVHVWDV 295 (839)
T ss_pred eeeeeeeccCccchhhhhhc----------cccceEEEEee
Confidence 23578899998865543111 23446888886
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.018 Score=61.40 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=132.8
Q ss_pred cCCCCEEEEEecC--CCCCchhcccccceeeceeecCCC-------CC-ccceeeEeceeEEEccCCCCC----Cceeee
Q 002164 117 SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRIDGKC-------NT-RSRMSFYTGIGIHQLFPDGKL----GQEIEI 182 (958)
Q Consensus 117 SPDG~~laf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~l~i~~~~~dg~~----~~~~~l 182 (958)
+|.|.-.+|-... +.+....-.+|+++|.+..-++.+ .+ ....+.+..+-+|+++..+.. .+..-+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 7888888886553 333333345566666554432211 11 112223367889999654431 122222
Q ss_pred ccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC--CceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 183 t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
++ +...+...+|.|-.+.++-.. .....|.++|+.+ .++......... .+..++|.|-+..|+.
T Consensus 224 ~~--h~~~VeDV~~h~~h~~lF~sv--------~dd~~L~iwD~R~~~~~~~~~~~ah~~----~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SG--HEDVVEDVAWHPLHEDLFGSV--------GDDGKLMIWDTRSNTSKPSHSVKAHSA----EVNCVAFNPFNEFILA 289 (422)
T ss_pred ec--CCcceehhhccccchhhheee--------cCCCeEEEEEcCCCCCCCcccccccCC----ceeEEEeCCCCCceEE
Confidence 33 334788999999666554332 1366788888874 333333322222 2778999987766665
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C--CeeeecCCC-ccccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D--GTVKEIGPP-AVYTS 336 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~--g~~~~l~~~-~~~~~ 336 (958)
+. + ..+.|.++|+ + .....+... ..+..
T Consensus 290 T~--------------------S----------------------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 290 TG--------------------S----------------------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred ec--------------------c----------------------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence 51 0 1234566665 3 334444444 77889
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc---cccccccCcceeeeecCCCCc
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI---AFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~---~~~~~~~~~~~~~~spDG~~l 413 (958)
+.|||+-+.|+.++. .++.+.+||+..-..++.. ....+..|- -=.++...+..+.|.|.-.++
T Consensus 322 V~WSPh~etvLASSg------------~D~rl~vWDls~ig~eq~~-eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 322 VEWSPHNETVLASSG------------TDRRLNVWDLSRIGEEQSP-EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred EEeCCCCCceeEecc------------cCCcEEEEeccccccccCh-hhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence 999999998888773 3458999999732111110 001111111 112334456789999999888
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeC
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
+..+ .+.+.+.+|..
T Consensus 389 I~Sv------------aeDN~LqIW~~ 403 (422)
T KOG0264|consen 389 IASV------------AEDNILQIWQM 403 (422)
T ss_pred EEEe------------cCCceEEEeec
Confidence 8752 44566777763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.086 Score=53.51 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l 234 (958)
.-...+||||+..|||+.. .+.|.++|+.|.+...+
T Consensus 45 QWRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 3456789999999999764 66888889888665544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.038 Score=55.66 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=124.5
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC-----eEEEEEeeccccCCCCCceEEEEEcCCCceee---cc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~-----~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---lt 235 (958)
.|.|..+..++ ++......+..........|.||.+ .||.+ +....||++..+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs---------~D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS---------SDFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhcc---------cCeEEEEeccCcCCceehhhhhc
Confidence 45566664433 3322222122223567788999985 34443 235678887765444322 22
Q ss_pred CCCCccccccccceEEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
...+..+.+.+.++.|. -|-++|..++-+ .+=
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSiD-----------------------------------------------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSID-----------------------------------------------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeeccc-----------------------------------------------CeE
Confidence 22333345567789998 456666655211 122
Q ss_pred eEEEEEc--CC--eeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 315 ~l~~~~~--~g--~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
.||-+.. .| +.+.|.....+..++|+.+|..++.+- . .++.+.++|+...+...|.-.+....
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv-g-----------aDGSvRmFDLR~leHSTIIYE~p~~~- 242 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV-G-----------ADGSVRMFDLRSLEHSTIIYEDPSPS- 242 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe-c-----------CCCcEEEEEecccccceEEecCCCCC-
Confidence 3444443 22 344455557888999999887766554 2 24588899988665544432111111
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceE
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (958)
...-.++|.+....+..+ . .-....|.++|+ -.-....-.|..+.+.+.+++|.|-++.-
T Consensus 243 --------~pLlRLswnkqDpnymAT--f---------~~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 243 --------TPLLRLSWNKQDPNYMAT--F---------AMDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred --------CcceeeccCcCCchHHhh--h---------hcCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 112345666544332221 1 112345666775 11223345567788889999999998776
Q ss_pred EEEEeccccceEEEEEc
Q 002164 471 VYESWYKTRRTRTWVIS 487 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~ 487 (958)
+.+..++- +.-+|.++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 66655442 23345443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.11 Score=53.97 Aligned_cols=241 Identities=14% Similarity=0.047 Sum_probs=134.0
Q ss_pred hcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccC
Q 002164 136 ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS 214 (958)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~ 214 (958)
.+.++-.++..+.++|.......++.+..+.|||+.+ ++ ...|+++- ..+..+++|+---+++-+.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----g~LkltltGhi--~~vr~vavS~rHpYlFs~g------- 212 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----GQLKLTLTGHI--ETVRGVAVSKRHPYLFSAG------- 212 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----CeEEEeecchh--heeeeeeecccCceEEEec-------
Confidence 3444556667777777766666666668899999966 43 23344432 3678889998666554432
Q ss_pred CCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccch
Q 002164 215 SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (958)
Q Consensus 215 ~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 294 (958)
+..+|--||++..+..+-..+.-.. +..++..|--+.|+...
T Consensus 213 --edk~VKCwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~g-------------------------------- 254 (460)
T KOG0285|consen 213 --EDKQVKCWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTGG-------------------------------- 254 (460)
T ss_pred --CCCeeEEEechhhhhHHHhccccce----eEEEeccccceeEEecC--------------------------------
Confidence 4668899999887766554433222 44555667777777541
Q ss_pred hhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 295 ~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
..+.+-++|+ +. .+..+... ..+.++.+.|-.-.|+..+. +..|.+|
T Consensus 255 -----------------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-------------D~tvrlW 304 (460)
T KOG0285|consen 255 -----------------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-------------DSTVRLW 304 (460)
T ss_pred -----------------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-------------CceEEEe
Confidence 1122334444 43 33444433 55666666664444555542 4489999
Q ss_pred ecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 372 TTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 372 d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
|+. |+....++.+. ..++.+...|+-..++- ...+.+--|++ ..|.-...
T Consensus 305 Dl~agkt~~tlt~hk-------------ksvral~lhP~e~~fAS--------------as~dnik~w~~--p~g~f~~n 355 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHK-------------KSVRALCLHPKENLFAS--------------ASPDNIKQWKL--PEGEFLQN 355 (460)
T ss_pred eeccCceeEeeeccc-------------ceeeEEecCCchhhhhc--------------cCCccceeccC--Cccchhhc
Confidence 998 66666777653 23355556665433322 22334444554 23433333
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+......+..++-..||- +++ .. .+..++..|..++
T Consensus 356 lsgh~~iintl~~nsD~v--~~~-G~--dng~~~fwdwksg 391 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDGV--LVS-GG--DNGSIMFWDWKSG 391 (460)
T ss_pred cccccceeeeeeeccCce--EEE-cC--CceEEEEEecCcC
Confidence 444444445555555552 222 21 2245777776664
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.38 Score=49.04 Aligned_cols=122 Identities=16% Similarity=0.296 Sum_probs=73.4
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee--ccCCCCccccccccceEEecCCeE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~--lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
..++..|+ ..++..+|||..+.++-... -++...+|.+... |.... ....+ +.+-.++|+.||..
T Consensus 20 ~ev~~pP~-DsIS~l~FSP~~~~~~~A~S------WD~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 20 YEVPNPPE-DSISALAFSPQADNLLAAGS------WDGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGSK 86 (347)
T ss_pred eecCCCcc-cchheeEeccccCceEEecc------cCCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCce
Confidence 34443332 36899999995544443322 3344555555433 33221 11222 22668999999988
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~ 335 (958)
++... ...++-++|+ +|+..++..+ +.+.
T Consensus 87 Vf~g~-------------------------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 87 VFSGG-------------------------------------------------CDKQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred EEeec-------------------------------------------------cCCceEEEEccCCCeeeeeeccccee
Confidence 88651 2345667888 8888888776 6777
Q ss_pred ccccCCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCc
Q 002164 336 SLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (958)
Q Consensus 336 ~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~ 376 (958)
...|-+-.. .|+..+ ++..|..||....
T Consensus 118 t~~wv~~~~~~cl~TGS-------------WDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGS-------------WDKTLKFWDTRSS 147 (347)
T ss_pred EEEEecCCCcceeEecc-------------cccceeecccCCC
Confidence 777776555 333332 4668999998743
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.013 Score=69.93 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=71.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+..+|+|+.++|..+..+.........+|+.+... .+.++.... ...+.|+|||+.+++......
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~--- 82 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGG--- 82 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCC---
Confidence 466788899999999988653344455667889876544 334443333 558899999999999831000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (958)
...++|+++.+| .+... ..+....|+|+|+.+++
T Consensus 83 ------------------------------------------~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 83 ------------------------------------------RVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ------------------------------------------CcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence 135688888754 22222 56678899999999999
Q ss_pred E
Q 002164 349 S 349 (958)
Q Consensus 349 ~ 349 (958)
.
T Consensus 118 ~ 118 (620)
T COG1506 118 L 118 (620)
T ss_pred E
Confidence 4
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.048 Score=53.61 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc---eEEEeccCCccccCcccccccccCcceeeeec
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~---~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
..+.+++|.|.+--+...... .+++|.+.+.++. ....+ +..+..|+.++.|.|
T Consensus 103 ~SVNsV~wapheygl~Lacas-----------SDG~vsvl~~~~~g~w~t~ki------------~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACAS-----------SDGKVSVLTYDSSGGWTTSKI------------VFAHEIGVNSVSWAP 159 (299)
T ss_pred ccceeecccccccceEEEEee-----------CCCcEEEEEEcCCCCccchhh------------hhccccccceeeecC
Confidence 667888898876644333211 2347777766532 11111 112336778899998
Q ss_pred C---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC---CceEEEeeccccCceeeecCC----ceEEEEEeccc
Q 002164 409 D---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE---GPEILHKLDLRYGGISWCDDS----LALVYESWYKT 478 (958)
Q Consensus 409 D---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~---~~~~l~~~~~~~~~~~~spDg----~~l~~~~~~~~ 478 (958)
- |..+-- ...+.-...+..+.++.+-+|+. +.+ ..+.|..+...++.++|+|.- .+|+..+.++.
T Consensus 160 a~~~g~~~~~--~~~~~~krlvSgGcDn~VkiW~~---~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 160 ASAPGSLVDQ--GPAAKVKRLVSGGCDNLVKIWKF---DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred cCCCcccccc--CcccccceeeccCCccceeeeec---CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 6 421100 00000000111233445566664 221 223356666778899999973 23444443332
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.-||..+.+...-+.+++.+ ....++. ++||..|..|+...
T Consensus 235 --viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 235 --VIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred --EEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 66888775543223333332 2333444 89999999887664
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.034 Score=56.68 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=51.5
Q ss_pred eceeEEEccCCCCCCceeeeccCC-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|.+|++ +....+..+. +.+.++..+..|-|+.-+-+. +...|..||+-.|+.-.+......
T Consensus 107 G~i~iw~~------~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---------~D~~lr~WNLV~Gr~a~v~~L~~~- 170 (362)
T KOG0294|consen 107 GHIIIWRV------GSWELLKSLKAHKGQVTDLSIHPSGKLALSVG---------GDQVLRTWNLVRGRVAFVLNLKNK- 170 (362)
T ss_pred CcEEEEEc------CCeEEeeeecccccccceeEecCCCceEEEEc---------CCceeeeehhhcCccceeeccCCc-
Confidence 57888887 3333332222 223699999999886544433 355677788877765555544443
Q ss_pred ccccccceEEecCCeEEEEE
Q 002164 242 LNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (958)
...+.|+|.|.++++.
T Consensus 171 ----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 171 ----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred ----ceeeEEcCCCCEEEEE
Confidence 3468999999988877
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0096 Score=60.79 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccCC
Q 002164 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (958)
Q Consensus 740 ~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (958)
.+-+..+++++.+.. ...+++|.++||||||.++-.++...+ +.++.+|..+.+.
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 344455566665543 356789999999999999988887543 4688888876543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=71.67 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
.....|++.||.+ . .+..|.|..+.........++++.+.++.+.+... .+++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4566789999977 3 35556666655433345567778888887776522 3589999999999999999988775
Q ss_pred c----eeEEEEeccCCCC
Q 002164 783 L----FCCGIARSGAYNR 796 (958)
Q Consensus 783 ~----~~a~v~~~~~~~~ 796 (958)
. ++..|++++.+..
T Consensus 186 ~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred hHHhHhccEEEECCCCCC
Confidence 3 6888888877653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0076 Score=67.42 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
+..++.||+|+.||..... ..... ..|++|+... ..+...|.+ +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS----------------------~~~eh------AvI~lw~t~~---W~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS----------------------SLKEH------AVIRLWNTAN---WLQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh----------------------CCccc------eEEEEEeccc---hhhhheecc--cceE
Confidence 5578999999999987653 11111 3689998732 122333433 2237
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+...+|||||++|+-+++ +....||-.--+-....+... ......++..+.|+||++.++..
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999999873 335566654211111111111 11122347789999999997765
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0039 Score=71.02 Aligned_cols=150 Identities=12% Similarity=0.100 Sum_probs=88.2
Q ss_pred EEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCc---HHHHHHHHCCcEEE
Q 002164 641 LIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAIL 716 (958)
Q Consensus 641 ~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~vl 716 (958)
.+.+.. ..+..+..|++...+ ++. ..|+||+++|||.++...+.....+|-....-+. .....|.+.+..++
T Consensus 51 y~~v~~~~~~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~ 126 (462)
T PTZ00472 51 YFDIPGNQTDKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIY 126 (462)
T ss_pred EEEeCCCCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEE
Confidence 344432 235678888887653 222 3799999999998876554444445443321110 01113556655555
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhC---C---C----c
Q 002164 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA---P---H----L 783 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~---p---~----~ 783 (958)
. +..-..|++..... ........+|+.++++...++ +.....++.|+|+||||..+-.+|.+- . + -
T Consensus 127 i-DqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~in 205 (462)
T PTZ00472 127 V-DQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYIN 205 (462)
T ss_pred E-eCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceee
Confidence 4 32112343332211 122356678888888766553 444557899999999999887777642 0 1 2
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
++++++..|..+
T Consensus 206 LkGi~IGNg~~d 217 (462)
T PTZ00472 206 LAGLAVGNGLTD 217 (462)
T ss_pred eEEEEEeccccC
Confidence 788888888655
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.031 Score=56.17 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=98.1
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~ 733 (958)
+|+..|+. |. .||.+-||.+.. ..|+- .+..+.+.|+++||+|++.+|.. + +...
T Consensus 8 ~wvl~P~~-------P~-gvihFiGGaf~g--------a~P~i---tYr~lLe~La~~Gy~ViAtPy~~--t----fDH~ 62 (250)
T PF07082_consen 8 SWVLIPPR-------PK-GVIHFIGGAFVG--------AAPQI---TYRYLLERLADRGYAVIATPYVV--T----FDHQ 62 (250)
T ss_pred cEEEeCCC-------CC-EEEEEcCcceec--------cCcHH---HHHHHHHHHHhCCcEEEEEecCC--C----CcHH
Confidence 46677753 22 466677765331 12221 12345677889999999965521 1 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC---CCCC----C--
Q 002164 734 RFVEQLVACAEAAVEEVVRRGVAHPS--KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTPF----G-- 802 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~--~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~~----~-- 802 (958)
............+++.|.++...++. +++-+|||+|+-+-+.+....+..-++-|.++ +-|.. ..++ .
T Consensus 63 ~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 63 AIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccc
Confidence 22334455566777778776544433 68889999999999888776543334444443 11100 0000 0
Q ss_pred cc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC-CCcEEEEEeCCCCcc
Q 002164 803 FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH-GALCRLVILPFESHG 876 (958)
Q Consensus 803 ~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~ 876 (958)
+. +....+-+......+.- .+ ...|+|-=.+|. .+++..+.+.|+.+ ...++....|| .|.
T Consensus 142 l~~EF~PsP~ET~~li~~~Y------~~-~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 142 LRLEFTPSPEETRRLIRESY------QV-RRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cccCccCCHHHHHHHHHHhc------CC-ccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 00 00011111111111110 12 235666666675 47788888888865 23466777886 885
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.33 Score=54.25 Aligned_cols=208 Identities=11% Similarity=0.084 Sum_probs=117.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+++.||+-.+ -+.-+...++.. .+....|-+--+||+..+ ...+|.+++..+++...........
T Consensus 35 G~V~IWnyet-qtmVksfeV~~~----PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy- 99 (794)
T KOG0276|consen 35 GDVQIWNYET-QTMVKSFEVSEV----PVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY- 99 (794)
T ss_pred CeeEEEeccc-ceeeeeeeeccc----chhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc-
Confidence 5788998744 111122333332 477778888788888844 3678888888888766554444332
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (958)
+..++-.|.--++..++.+ ..-.+|.++-.
T Consensus 100 ---IR~iavHPt~P~vLtsSDD-----------------------------------------------m~iKlW~we~~ 129 (794)
T KOG0276|consen 100 ---IRSIAVHPTLPYVLTSSDD-----------------------------------------------MTIKLWDWENE 129 (794)
T ss_pred ---eeeeeecCCCCeEEecCCc-----------------------------------------------cEEEEeeccCc
Confidence 5666667766665544111 12234444321
Q ss_pred CeeeecCCC--ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccc
Q 002164 323 GTVKEIGPP--AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 323 g~~~~l~~~--~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~ 398 (958)
=...+..++ -.+..++|.| |-..++..+. ++++-+|.+....+ ..|. ++.
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL-------------DrTVKVWslgs~~~nfTl~-------------gHe 183 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASL-------------DRTVKVWSLGSPHPNFTLE-------------GHE 183 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeec-------------cccEEEEEcCCCCCceeee-------------ccc
Confidence 134444444 5677889999 5666666653 34888998863321 2222 333
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEE
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
.|+..+.|-+-|.+=+..+- +.+..+-+||. .+....+.|..+...++.+.|.|.=-.|+..+
T Consensus 184 kGVN~Vdyy~~gdkpylIsg-----------aDD~tiKvWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISG-----------ADDLTIKVWDY--QTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred cCcceEEeccCCCcceEEec-----------CCCceEEEeec--chHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 56666667665544443211 22335677875 22234566666666677777766654444444
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0045 Score=70.74 Aligned_cols=88 Identities=23% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHH-CCcEEEEcCCCCCCCCCCcccch---------hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 002164 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 705 ~~~la~-~G~~vl~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~av~~l~~~~-~~d~~~i~l~G~S~GG~~a 773 (958)
...||+ .|-.++. .-.+-||.+.... -..++.++|+...++++.++. ..+..+++++|.||||.||
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 345665 4666666 4455677774321 115688999999999999753 3445699999999999999
Q ss_pred HHHHHhCCCceeEEEEeccCCC
Q 002164 774 ANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+++-.++|+.|.|+++.+++..
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999988654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0086 Score=55.35 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccc-----h
Q 002164 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDR-----T 809 (958)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~-----~ 809 (958)
......+.++.+|..+ .| ...+|+|-|.||+.|.+++.+. -+++++. +|..-.....-++..... .
T Consensus 41 ~p~~a~~ele~~i~~~-----~~-~~p~ivGssLGGY~At~l~~~~--Girav~~-NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQEL-----GD-ESPLIVGSSLGGYYATWLGFLC--GIRAVVF-NPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHc-----CC-CCceEEeecchHHHHHHHHHHh--CChhhhc-CCCcCchhhhhhhcCCCCCCCCcc
Confidence 3455566666655432 22 2489999999999999999887 3555543 333221111111111000 0
Q ss_pred hh-hcHHHHHhcCcccccCCCCCC-EEEEee-CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 810 LW-EATSTYVEMSPFMSANKLKKP-ILLVHG-EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 810 ~~-~~~~~~~~~sp~~~~~~~~~P-~Lii~G-~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
-| -........ -...+..++.| .|++-. +.|.+.. ..++.+.+...+ ..+..|.+|.|.+ ....
T Consensus 112 ~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---hHHh
Confidence 01 000101110 11223334443 444444 4488877 777777766554 3467888999854 4566
Q ss_pred HHHHHHHHH
Q 002164 887 LWETDRWLQ 895 (958)
Q Consensus 887 ~~~i~~fl~ 895 (958)
++.|..|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 788888853
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.068 Score=61.01 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=62.5
Q ss_pred HHHHCCcEEEEcCCCCCCCCC----Cccc-----chhhHHHHHHHHHHHHHHHHHcCC-CCCCcEEEEEeChHHHHHHHH
Q 002164 707 LWLARGFAILGGPTTPIIGEG----DEEA-----NDRFVEQLVACAEAAVEEVVRRGV-AHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 707 ~la~~G~~vl~~~~~~~~G~G----~~~~-----~~~~~~~~~~D~~~av~~l~~~~~-~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.-+++||+++.-|. |..+.. .++. ..+|....+.+...+.+.|.+..+ ..+++-...|-|-||-.++.+
T Consensus 54 ~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 54 TALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 34689999998433 222221 1122 134445567777777788887643 567899999999999999999
Q ss_pred HHhCCCceeEEEEecc
Q 002164 777 LAHAPHLFCCGIARSG 792 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~ 792 (958)
|-++|+.|.++++.+|
T Consensus 133 AQryP~dfDGIlAgaP 148 (474)
T PF07519_consen 133 AQRYPEDFDGILAGAP 148 (474)
T ss_pred HHhChhhcCeEEeCCc
Confidence 9999999999999887
|
It also includes several bacterial homologues of unknown function. |
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.028 Score=58.43 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=56.2
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
..++|.|.+.+++|.+++ .+..+++.+..++.|.+++...+.+..|.-....+.+++.+.+.+|
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 345899999999999999 9999999999999999999999999999876667777887777766
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.046 Score=54.96 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=69.3
Q ss_pred cccccccCC--CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 VYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 ~~~~~~~Sp--DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.+++-.||| ||..++.+.. ++++-||+.+... ...... .....++++.|.|+-
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d--------------~tl~~~D~RT~~~--~~sI~d---------AHgq~vrdlDfNpnk 226 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSD--------------STLQFWDLRTMKK--NNSIED---------AHGQRVRDLDFNPNK 226 (370)
T ss_pred eecccccCCCCccceEEEeCC--------------CcEEEEEccchhh--hcchhh---------hhcceeeeccCCCCc
Confidence 456778999 9999998873 3889999874221 111110 111345788899998
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-CceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
+.++.. .+..+.|.+||. ...+ ..+.+..+...+..+.|.|.-..|+.+...+
T Consensus 227 q~~lvt------------~gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 227 QHILVT------------CGDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred eEEEEE------------cCCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 887774 244556888885 2222 3345566667778888999877777775544
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.27 Score=49.79 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred EEEEEc-CCeee-ecCCCccccccccCCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 316 LVLVSL-DGTVK-EIGPPAVYTSLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 316 l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
|-++|. +-+.. .+.-++.+++-+|||=.- .|+.+..+. .+|.+.|++.+.......
T Consensus 126 lKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~------------~~VrLCDi~SGs~sH~Ls-------- 185 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD------------VQVRLCDIASGSFSHTLS-------- 185 (397)
T ss_pred EEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCC------------CcEEEEeccCCcceeeec--------
Confidence 445554 33322 222236677888998443 343333332 389999999665433222
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCC----------CCCCCceEE---Eeecccc
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP----------VQGEGPEIL---HKLDLRY 458 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~g~~~~~l---~~~~~~~ 458 (958)
++..++-.+.|||...++++.. +.++.+.+||+-. -+++.+..+ +...+.+
T Consensus 186 ----GHr~~vlaV~Wsp~~e~vLatg------------saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 186 ----GHRDGVLAVEWSPSSEWVLATG------------SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred ----cccCceEEEEeccCceeEEEec------------CCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 2336678899999999888751 2334455555411 122222112 2345567
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEc
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
.+++|+.||++++...-++ +.++|...
T Consensus 250 ngla~tSd~~~l~~~gtd~--r~r~wn~~ 276 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDD--RIRVWNME 276 (397)
T ss_pred eeeeecccchhhhhccCcc--ceEEeecc
Confidence 8899999999987654332 25566543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.018 Score=64.65 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=74.6
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC-ccccCcccccccccCcceeeeecCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
-.++++..|..|+++..-.+ .+|.|+++..++.+...... ..+..+ -.+...|.|-
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD-------------rnirif~i~sgKq~k~FKgs~~~eG~l----------IKv~lDPSgi 654 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD-------------RNIRIFDIESGKQVKSFKGSRDHEGDL----------IKVILDPSGI 654 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc-------------cceEEEeccccceeeeecccccCCCce----------EEEEECCCcc
Confidence 45677788899999888754 38999999965544433322 222222 2355666666
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|+.. -.+..|-++|. ..|.-..+.+.+...+.++.|++|=|.|+..+.++= .-+|++..
T Consensus 655 Y~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred EEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 55543 12335677775 456666677778888899999999999987764432 44565554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.044 Score=55.22 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=93.8
Q ss_pred cceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCC-eEEEEEeeccccCCCCCceEEEEEcCCCceeecc
Q 002164 157 SRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235 (958)
Q Consensus 157 ~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt 235 (958)
...+++..|.+||.++ -+..-. +.-.+.+..-+|||=.. +-+... +....+|.+.|+++|......
T Consensus 118 tssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred ecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCcceeee
Confidence 3345667899999865 222211 22224678888999654 333333 223678999999999877665
Q ss_pred CCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcce
Q 002164 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (958)
Q Consensus 236 ~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~ 315 (958)
.+.... +-.+.|||-.+++.++....+. .+.|+- |+ ..+-
T Consensus 185 sGHr~~----vlaV~Wsp~~e~vLatgsaDg~-----------irlWDi--------Rr-----------------asgc 224 (397)
T KOG4283|consen 185 SGHRDG----VLAVEWSPSSEWVLATGSADGA-----------IRLWDI--------RR-----------------ASGC 224 (397)
T ss_pred ccccCc----eEEEEeccCceeEEEecCCCce-----------EEEEEe--------ec-----------------ccce
Confidence 554443 7789999999999987211111 011111 10 1133
Q ss_pred EEEEEc-CCeeeecCC----C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce
Q 002164 316 LVLVSL-DGTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (958)
Q Consensus 316 l~~~~~-~g~~~~l~~----~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~ 377 (958)
+..+|. +++.-++.. . +.+...+|+.||++++....+ ..+.+|+...+.
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGR 279 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCc
Confidence 455666 443222221 1 667889999999999877643 378889887543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.089 Score=55.32 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=63.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..+.|.|--.-+++++.. +..+.+|++.+++. ..|. ++ .-+.++.|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 456778999988888777632 45899999997653 3333 32 445789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc-ccCceeeecCCceEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYE 473 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~ 473 (958)
..++-. ..+..|.+||. ..|.....-..+.+ ......|-.+|+ |+.+
T Consensus 186 s~l~Tt-------------ckDKkvRv~dp--r~~~~v~e~~~heG~k~~Raifl~~g~-i~tT 233 (472)
T KOG0303|consen 186 SLLCTT-------------CKDKKVRVIDP--RRGTVVSEGVAHEGAKPARAIFLASGK-IFTT 233 (472)
T ss_pred ceeeee-------------cccceeEEEcC--CCCcEeeecccccCCCcceeEEeccCc-eeee
Confidence 988763 33446888873 33322222212222 334578888988 4444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0045 Score=63.85 Aligned_cols=172 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+|-|||..-+ .+.+.++ -+. .+....++|--..|+-+.. ....|+++|+..+.+.+-....- .
T Consensus 168 ~i~IWD~~R~---~Pv~sms---wG~Dti~svkfNpvETsILas~~--------sDrsIvLyD~R~~~Pl~KVi~~m-R- 231 (433)
T KOG0268|consen 168 QIDIWDEQRD---NPVSSMS---WGADSISSVKFNPVETSILASCA--------SDRSIVLYDLRQASPLKKVILTM-R- 231 (433)
T ss_pred eeeecccccC---Cccceee---cCCCceeEEecCCCcchheeeec--------cCCceEEEecccCCccceeeeec-c-
Confidence 5778887432 2333332 222 6788899998887776542 35688999987765532211111 1
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
...++|+|.+ ..|.+ . + ....||.+|.
T Consensus 232 ---TN~IswnPea-fnF~~-a-------------------------------------~----------ED~nlY~~DmR 259 (433)
T KOG0268|consen 232 ---TNTICWNPEA-FNFVA-A-------------------------------------N----------EDHNLYTYDMR 259 (433)
T ss_pred ---ccceecCccc-cceee-c-------------------------------------c----------ccccceehhhh
Confidence 3478999944 23322 1 1 1245888876
Q ss_pred C-CeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccc
Q 002164 322 D-GTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (958)
Q Consensus 322 ~-g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~ 398 (958)
. .....+..+ ..+.+++|||-|+-++..+ ++..|.|+.++.+.-+.+..... .
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs-------------yDksIRIf~~~~~~SRdiYhtkR-----------M 315 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS-------------YDKSIRIFPVNHGHSRDIYHTKR-----------M 315 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhcccc-------------ccceEEEeecCCCcchhhhhHhh-----------h
Confidence 2 122233333 5678999999999988776 45589999988665555443211 1
Q ss_pred cCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 399 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
..+-.+.||-|.++|+-- +....|.+|.+
T Consensus 316 q~V~~Vk~S~Dskyi~SG-------------Sdd~nvRlWka 344 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISG-------------SDDGNVRLWKA 344 (433)
T ss_pred heeeEEEEeccccEEEec-------------CCCcceeeeec
Confidence 345678999999987662 44455677764
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.058 Score=55.81 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=111.4
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCC-CCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE-FPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
.+++.-| .++..++--. ++..|++|-.|--. -+... |.............+.|+++.++.
T Consensus 3 ~v~t~~G-~v~V~v~G~~------~~~kp~ilT~HDvG-----------lNh~scF~~ff~~~~m~~i~~~f~i~Hi~a- 63 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDP------KGNKPAILTYHDVG-----------LNHKSCFQGFFNFEDMQEILQNFCIYHIDA- 63 (283)
T ss_dssp EEEETTE-EEEEEEESS--------TTS-EEEEE--TT-------------HHHHCHHHHCSHHHHHHHTTSEEEEEE--
T ss_pred eeccCce-EEEEEEEecC------CCCCceEEEecccc-----------ccchHHHHHHhcchhHHHHhhceEEEEEeC-
Confidence 3555454 6777777422 12379999999621 11111 211111122233456799988444
Q ss_pred CCCCC--CCcccchhh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 722 PIIGE--GDEEANDRF----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 722 ~~~G~--G~~~~~~~~----~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|+ |....+..+ .++..+++..+++++ .+ +.+..+|--+|+++-..+|.++|+++-++|++++...
T Consensus 64 --PGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f----~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 64 --PGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF----GL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCT 135 (283)
T ss_dssp --TTTSTT-----TT-----HHHHHCTHHHHHHHH----T-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S
T ss_pred --CCCCCCcccccccccccCHHHHHHHHHHHHHhC----Cc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCC
Confidence 443 322223332 334455555555554 23 4799999999999999999999999999999998643
Q ss_pred CC--------------CCCCCccccc--chhh-------------------------hcH-------HHHHhc-Cccccc
Q 002164 796 RT--------------LTPFGFQNED--RTLW-------------------------EAT-------STYVEM-SPFMSA 826 (958)
Q Consensus 796 ~~--------------~~~~~~~~~~--~~~~-------------------------~~~-------~~~~~~-sp~~~~ 826 (958)
.. +...++.... .-.| .++ ..|... +.....
T Consensus 136 ~~gw~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~ 215 (283)
T PF03096_consen 136 AAGWMEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIER 215 (283)
T ss_dssp ---HHHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SEC
T ss_pred CccHHHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhc
Confidence 11 0000110000 0000 000 111111 222234
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
....+|+|++.|+.-+. .+.+.++..+|.. ...+++.++++|=... .+....+.+.+.=|+.
T Consensus 216 ~~~~c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 216 PSLGCPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TTCCS-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 55679999999999876 5678889888854 3689999998866553 4455555555555544
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.13 Score=57.57 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
...+....|-| |+..+... .|...+..||+++++.+.. .-+.... +.+.+|.|+...+|++
T Consensus 100 ~nAifDl~wap-ge~~lVsa--------sGDsT~r~Wdvk~s~l~G~~~~~GH~~S----vkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 100 KNAIFDLKWAP-GESLLVSA--------SGDSTIRPWDVKTSRLVGGRLNLGHTGS----VKSECFMPTNPAVFCT 162 (720)
T ss_pred cceeEeeccCC-CceeEEEc--------cCCceeeeeeeccceeecceeecccccc----cchhhhccCCCcceee
Confidence 34788899999 87766653 2466778888888776544 3323322 6788999998888876
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.22 Score=53.52 Aligned_cols=228 Identities=13% Similarity=0.143 Sum_probs=127.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
++|-+|++.+.+. ....-+...+++..++...|+|-...-+|... ..+.|...|++++....+......
T Consensus 210 G~VG~Wn~~~~~~-d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS--------yDGtiR~~D~~~~i~e~v~s~~~d-- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEK-DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS--------YDGTIRLQDFEGNISEEVLSLDTD-- 278 (498)
T ss_pred CcEEEEecCCCCC-ccCceEEeccCCccccceEecCCChhheeeec--------cCceeeeeeecchhhHHHhhcCcc--
Confidence 5789999942221 12222333445567899999996655445432 356788889888766555544221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
+..+.++.++.+...+++.. ..+.+-++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~-------------------------------------------------~~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGD-------------------------------------------------NVGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEee-------------------------------------------------cccceEEEEee
Confidence 11255777777766666651 1122335555
Q ss_pred -CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEE-EeccCCccccCccccc
Q 002164 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVR-ELCDLPLAEDIPIAFN 395 (958)
Q Consensus 322 -~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~-~l~~~~~~~~~p~~~~ 395 (958)
+| +...+.-. ..+.++++.|--.+++.+... ++...|||+.. ++.. .|...+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~H--------- 368 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLPH--------- 368 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceecccc---------
Confidence 33 23444433 578889999988887777633 34778999872 2221 2333221
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-Cc-eEEEeeccc------cCceeeecCC
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GP-EILHKLDLR------YGGISWCDDS 467 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~-~~l~~~~~~------~~~~~~spDg 467 (958)
...+.++.|||+|-.|+.. ..++.|.++|..-+... .+ ..| .++.. .....|.||-
T Consensus 369 --rrsV~sAyFSPs~gtl~TT-------------~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 369 --RRSVNSAYFSPSGGTLLTT-------------CQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred --cceeeeeEEcCCCCceEee-------------ccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCc
Confidence 1345678899998886653 45667888874100010 11 122 11111 2346899987
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..|+...- . ..|=+++..++
T Consensus 433 ~li~vg~~-~---r~IDv~~~~~~ 452 (498)
T KOG4328|consen 433 NLIVVGRY-P---RPIDVFDGNGG 452 (498)
T ss_pred cEEEEecc-C---cceeEEcCCCC
Confidence 76666532 2 23556666553
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0026 Score=44.53 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.5
Q ss_pred eEEEeeccccCceeeecCCceEEEEEecc-ccceEEEE
Q 002164 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (958)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~ 485 (958)
++++........+.|||||++|+|+++.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666666778899999999999999876 12367774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.17 Score=52.12 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
.++..+|.||.+.|+.+.+ +...|+.++.+|.-.+++.-.+... ...+++..+|.+++
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEE
Confidence 5888999999999888753 4678999998765555543222222 56788888886555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.61 Score=54.40 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEcCC-CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
.-.++||.+++++....+ + +..+|+ +.. +.+...-.++..+...+.+ ++||+||.+|+.+..+
T Consensus 209 t~~~~spn~~~~Aa~d~d-G-rI~vw~-d~~~~~~~~t~t~lHWH~~~V~~------L~fS~~G~~LlSGG~E------- 272 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD-G-RILVWR-DFGSSDDSETCTLLHWHHDEVNS------LSFSSDGAYLLSGGRE------- 272 (792)
T ss_pred eeEEeccccceEEEeccC-C-cEEEEe-ccccccccccceEEEecccccce------eEEecCCceEeecccc-------
Confidence 347899999998876543 2 255554 222 2222223334444444444 8899999999877632
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~ 617 (958)
..|.+|.+++++.+-|-.-... .. ...+|||+..+.+..+. .+|.++..+
T Consensus 273 --------------~VLv~Wq~~T~~kqfLPRLgs~-----I~-------~i~vS~ds~~~sl~~~D----NqI~li~~~ 322 (792)
T KOG1963|consen 273 --------------GVLVLWQLETGKKQFLPRLGSP-----IL-------HIVVSPDSDLYSLVLED----NQIHLIKAS 322 (792)
T ss_pred --------------eEEEEEeecCCCcccccccCCe-----eE-------EEEEcCCCCeEEEEecC----ceEEEEecc
Confidence 2588999999986555443332 11 23577888777776662 335555443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.089 Score=56.42 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred ccCCeEEEEeCCCCCC-CCceEEE--eeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 430 TPRDIIYTQQAEPVQG-EGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 430 ~~~~~l~~~~~~~~~g-~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+..+.|.+|.+ .+| .....+. ...+.+.++.|+++|++|+.......+-.+-|
T Consensus 399 S~~G~vrLW~i--~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 399 SWSGCVRLWKI--EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCCceEEEEe--cCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 44556667764 122 2333442 24566788999999999888765554333333
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.023 Score=58.05 Aligned_cols=139 Identities=14% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCCceecCCCCEE-EEEecCC--CCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 111 LPALSFSPQRDKI-LFLKRRA--LPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 111 ~~~~~~SPDG~~l-af~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
....+++|+.+.+ +|....+ ..+...+..+...+.++...+..+...+.+.+.+-|+|....||+..+.-.|..+
T Consensus 22 rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi-- 99 (361)
T KOG1523|consen 22 RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI-- 99 (361)
T ss_pred CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe--
Confidence 4455566665444 3333221 1233345555555555666666655555555568899988666655554444333
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc-eeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.....+.|||.+..+|..+. .....|+.+.-+..- .-+.+..+ +...+..+.|.|++-.|+..
T Consensus 100 NrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E~ENdWWVsKhikkP---irStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 100 NRAATCVKWSPKENKFAVGSG-------ARLISVCYYEQENDWWVSKHIKKP---IRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred ccceeeEeecCcCceEEeccC-------ccEEEEEEEecccceehhhhhCCc---cccceeeeeccCCcceeccc
Confidence 345788999999999988442 123334444322110 00011111 11126689999999887765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.31 Score=49.35 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=81.5
Q ss_pred ccccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCce----EEEeccCCccccCcccccccccCcceeee
Q 002164 332 AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 332 ~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
...+++.|.. |-++|..++-+ .+..+||++.+. .++|..+. ..+..++|
T Consensus 151 aPlTSFDWne~dp~~igtSSiD-------------TTCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf 204 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSID-------------TTCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAF 204 (364)
T ss_pred CcccccccccCCcceeEeeccc-------------CeEEEEEEeeccccceeeEEEecC-------------cceeEEEe
Confidence 5678899987 55666666533 377899998651 23444332 45578899
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-Eee---ccccCceeeecCC-ceEEEEEeccccce
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKL---DLRYGGISWCDDS-LALVYESWYKTRRT 481 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~---~~~~~~~~~spDg-~~l~~~~~~~~~~~ 481 (958)
+.+|..+... ++..+.+.++|+ ...+...+ ... ....-.++|++.. ++++.... +. .
T Consensus 205 ~~~s~~~FAS------------vgaDGSvRmFDL---R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~-dS--~ 266 (364)
T KOG0290|consen 205 LKGSRDVFAS------------VGADGSVRMFDL---RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-DS--N 266 (364)
T ss_pred ccCccceEEE------------ecCCCcEEEEEe---cccccceEEecCCCCCCcceeeccCcCCchHHhhhhc-CC--c
Confidence 9977766553 344566777775 33333333 221 1223446777654 34442222 22 4
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
++.++|..-+ ..+......+...+.+ ++|.|-.+.-+..
T Consensus 267 ~V~iLDiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hict 305 (364)
T KOG0290|consen 267 KVVILDIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICT 305 (364)
T ss_pred eEEEEEecCC-CcceehhhcCcccccc------eEecCCCCceeee
Confidence 5777776654 2344444444444444 7898877554444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.069 Score=55.80 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=85.1
Q ss_pred eEEEEEc-CCe----eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCcc
Q 002164 315 QLVLVSL-DGT----VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLA 387 (958)
Q Consensus 315 ~l~~~~~-~g~----~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~ 387 (958)
+|++... +|. .+.++.+ ..+..+.|||.-+.++++-.- ++.|.|||+..+..+ .++...
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~kA-- 300 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTKA-- 300 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEeec--
Confidence 3555544 452 3344444 678899999998888777633 458999999855221 222211
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce-EEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spD 466 (958)
....+.-++|+.+-..|+. .+..+.+-+||+-.+..+++. ....+...+..+.|+|.
T Consensus 301 ---------h~sDVNVISWnr~~~lLas-------------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 301 ---------HNSDVNVISWNRREPLLAS-------------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ---------cCCceeeEEccCCcceeee-------------cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 1123456889887664444 134556778886444555443 33556778899999997
Q ss_pred CceEEEEEeccccceEEEEEcCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...++.++..+. +..||.+.++.
T Consensus 359 e~s~iaasg~D~-QitiWDlsvE~ 381 (440)
T KOG0302|consen 359 EDSVIAASGEDN-QITIWDLSVEA 381 (440)
T ss_pred cCceEEeccCCC-cEEEEEeeccC
Confidence 665554444332 37788877665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.5 Score=48.16 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=30.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEec
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC 382 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~ 382 (958)
..-+.++||||+..||++.. .+.|.++|+.|.....|.
T Consensus 44 PQWRkl~WSpD~tlLa~a~S-------------~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAES-------------TGTIRVFDLMGSELFVIP 81 (282)
T ss_pred chheEEEECCCCcEEEEEcC-------------CCeEEEEecccceeEEcC
Confidence 45567899999999999974 358999999987766554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=61.91 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=61.9
Q ss_pred CCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCC
Q 002164 364 FPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (958)
Q Consensus 364 ~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (958)
.+++|++||++.+..+.+........... ..+....+.+++-.+.|. +++. .+-...|.+|| +.
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~t~~sl-~sG~k~siYSLA~N~t~t-~ivs------------Ggtek~lr~wD--pr 201 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNVTVNSL-GSGPKDSIYSLAMNQTGT-IIVS------------GGTEKDLRLWD--PR 201 (735)
T ss_pred CCccEEEEEccCcchhhhhhccccccccC-CCCCccceeeeecCCcce-EEEe------------cCcccceEEec--cc
Confidence 56799999999664432222110000000 001112334444445552 2221 13344678888 46
Q ss_pred CCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 444 QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 444 ~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
...+...|..+...++.+..++||++++.++.+++ .+||.+.
T Consensus 202 t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt--IrlWdLg 243 (735)
T KOG0308|consen 202 TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT--IRLWDLG 243 (735)
T ss_pred cccceeeeeccccceEEEEEcCCCCeEeecCCCce--EEeeecc
Confidence 67777778777778888999999999998877665 6677653
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.008 Score=65.01 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=58.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CCcEEEEcCCCCCCCCCCccc-chhhHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEA-NDRFVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~ 745 (958)
.|++|++||..... ....+.......+.. .++.|+.+|... +-..... ........-..+..
T Consensus 71 ~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDWs~--~a~~~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 71 KPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDWSR--GASNNYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp SEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE-HH--HHSS-HHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcchh--hccccccchhhhHHHHHHHHHH
Confidence 79999999953111 011122223333333 488999855511 1000000 00111223344556
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEeccC
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (958)
.+..|.+...+++++|.|+|||+||.+|..++.+... ++..+....|.
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 6777775555789999999999999999999887755 67777777764
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.31 Score=50.18 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=67.8
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..++.++|.||.+.|+.+.+. +..|+.++.+|+-.+.+.-... ....++++.-+|+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l~g~------------~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPLDGF------------GDYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE-SS-------------SSEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeCCCC------------CCceeEEEECCCE
Confidence 457889999999999888855 3478888888776666543211 2235677876665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-----eEEE-----eeccccCceeeecCCceEEEEEeccccce
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-----~~l~-----~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
.++. + .....+++++++. .+... +.+. ..+..+.+++|.|.++.|+...+.+. .
T Consensus 78 ~vl~--~-----------Er~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P--~ 141 (248)
T PF06977_consen 78 YVLS--E-----------ERDQRLYIFTIDD-DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP--K 141 (248)
T ss_dssp EEEE--E-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS--E
T ss_pred EEEE--E-----------cCCCcEEEEEEec-cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC--h
Confidence 3332 1 1244677766511 22211 1221 12334678999999999988876655 5
Q ss_pred EEEEEcC
Q 002164 482 RTWVISP 488 (958)
Q Consensus 482 ~l~~~~~ 488 (958)
.||.++.
T Consensus 142 ~l~~~~~ 148 (248)
T PF06977_consen 142 RLYEVNG 148 (248)
T ss_dssp EEEEEES
T ss_pred hhEEEcc
Confidence 7888876
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.62 Score=52.08 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=99.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+++|||+.++.... ......++++|.+++........... -...+.+|+|+.++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999888652 11478899999888776554332221 24788999999888761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee------cCCCccccccccCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE------IGPPAVYTSLDPSPD 342 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~------l~~~~~~~~~~~SpD 342 (958)
. ..+.|..++. +-...+ +..+.......++||
T Consensus 179 ---------------~--------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 ---------------S--------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred ---------------c--------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 0 2345667776 333332 222234467789999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|+++++...... ...+...|...+......... . . .....+..+|+|+.++...
T Consensus 218 g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~-~---------~-~~~~~v~~~p~g~~~yv~~----- 271 (381)
T COG3391 218 GNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPV-G---------S-GAPRGVAVDPAGKAAYVAN----- 271 (381)
T ss_pred CCEEEEEeccCC----------CceEEEEeCCCceEEEecccc-c---------c-CCCCceeECCCCCEEEEEe-----
Confidence 999888764321 247777887765544431110 0 0 0235688999999887741
Q ss_pred CCcccccccCCeEEEEeC
Q 002164 423 GDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~ 440 (958)
...+.+++++.
T Consensus 272 -------~~~~~V~vid~ 282 (381)
T COG3391 272 -------SQGGTVSVIDG 282 (381)
T ss_pred -------cCCCeEEEEeC
Confidence 22456777773
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=57.90 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 703 ~~~~~la~~G~~---vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
.....|.++||. +++..+ |.+..... ....-.....+.+.|+.+++. ... ||=|+|||+||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 446689999999 677555 22222111 111122346677777777654 334 89999999999999988
Q ss_pred HHhC
Q 002164 777 LAHA 780 (958)
Q Consensus 777 a~~~ 780 (958)
+...
T Consensus 93 i~~~ 96 (219)
T PF01674_consen 93 IKGG 96 (219)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 7643
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0053 Score=66.38 Aligned_cols=125 Identities=26% Similarity=0.285 Sum_probs=80.1
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE-EEcCCCCC-CC---C
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI-LGGPTTPI-IG---E 726 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v-l~~~~~~~-~G---~ 726 (958)
|+..+|.|. .++.+ .-++|+++||.|.++.+.-.+.++ ..|++.+-++ +.++||-. -| .
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 666778784 23333 459999999988877655554432 2556655544 44666421 12 1
Q ss_pred -CCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
|..+.+. .-..-|..-|+.|+.++ ---||++|.++|.|+|+.-+.+-+... ...|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 2333333 34467888899999996 236999999999999998765433321 146888888887544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.09 Score=56.50 Aligned_cols=142 Identities=12% Similarity=0.008 Sum_probs=78.4
Q ss_pred ceEEEEEc-CCeeeecC-CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 314 TQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
.+||++.+ +|..-.+. .+ ..++-..||-||++|+..+++ +.+.+|.+.. .+...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskD-------------g~V~vW~l~~----lv~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKD-------------GAVLVWLLTD----LVSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCC-------------ccEEEEEEEe----ecccccCCCcc
Confidence 56999999 89654433 33 667888999999999877754 4788887531 11111100111
Q ss_pred cc-cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCce
Q 002164 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (958)
Q Consensus 391 p~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (958)
|. -|+.+...+.++...+-|..-.+ +.++.+..+.+|++ ..+..-.-...+.....++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl-----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARL-----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceE-----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 12223333444444444322111 12355667788886 44432211234556677888998887
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002164 470 LVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~ 490 (958)
++..... ..+|+.++-.
T Consensus 232 ~yiGt~~----G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEE----GKIFQNLLFK 248 (476)
T ss_pred EEecCCc----ceEEeeehhc
Confidence 7665433 3477665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1 Score=54.75 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=43.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+....+--|+..|.+.. +.++|.++|+++....-+....++ +....||||++++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~---------~~G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT---------ALGDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALI 127 (1265)
T ss_pred ceEEEEEecccceEEEEe---------cCCcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEE
Confidence 566777888888888854 366888888887766655444443 7789999999999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.15 Score=53.35 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=81.3
Q ss_pred ceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 366 ~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
..|++|...++..+. +..| |.+....+..+.|||.-+.+++.. +-.+.|.+||+ ..+
T Consensus 234 ~~I~lw~~~~g~W~v-------d~~P--f~gH~~SVEDLqWSptE~~vfaSc------------S~DgsIrIWDi--Rs~ 290 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKV-------DQRP--FTGHTKSVEDLQWSPTEDGVFASC------------SCDGSIRIWDI--RSG 290 (440)
T ss_pred cceEeeeeccCceee-------cCcc--ccccccchhhhccCCccCceEEee------------ecCceEEEEEe--cCC
Confidence 478888877654432 1111 223345677899999988877742 34556788885 333
Q ss_pred C-CceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCce
Q 002164 446 E-GPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523 (958)
Q Consensus 446 ~-~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 523 (958)
. +.... ..++.++.-+.|+.+-..|++....+. .+||.+..-.. ++++..+..+...+++ +.|+|....
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt--~~iwDLR~~~~-~~pVA~fk~Hk~pIts------ieW~p~e~s 361 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT--LSIWDLRQFKS-GQPVATFKYHKAPITS------IEWHPHEDS 361 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcceeeecCCCce--EEEEEhhhccC-CCcceeEEeccCCeeE------EEeccccCc
Confidence 2 22223 345668888999988776665544333 66776664443 3667777777666666 889997765
Q ss_pred EEEE
Q 002164 524 VIAK 527 (958)
Q Consensus 524 l~~~ 527 (958)
++..
T Consensus 362 ~iaa 365 (440)
T KOG0302|consen 362 VIAA 365 (440)
T ss_pred eEEe
Confidence 4444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.48 Score=52.96 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=122.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
......+++|++++.... ....+.+++.++.....-...+.. ...++++|||+.++++-...
T Consensus 76 p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc-----
Confidence 345677889987766432 256788888665443332222221 44789999999999871100
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCCCCcEEEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....+++++. ++.... +..+......+++|||+.++.
T Consensus 138 -----------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 138 -----------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV 176 (381)
T ss_pred -----------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence 1245777777 553322 222222367899999999988
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
.... .+.+.+.|.++....+ ...... .....++..+.++|||++++.....
T Consensus 177 ~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~--------- 227 (381)
T COG3391 177 TNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG--------- 227 (381)
T ss_pred EecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc---------
Confidence 8733 3478888877665543 111000 0111345689999999988874211
Q ss_pred cccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+....+..++. ..+..... .........+..+|+|+.++...... ..+.++|....
T Consensus 228 -~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 -SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred -CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33333332 11111345688999999988775442 45888887663
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=55.86 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=43.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.+...+-+|+|.+|+-. ....+||+|.+.+|....+....-. .+.-+.|+.||+.|+..
T Consensus 82 g~v~al~s~n~G~~l~ag---------~i~g~lYlWelssG~LL~v~~aHYQ----~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAG---------TISGNLYLWELSSGILLNVLSAHYQ----SITCLKFSDDGSHIITG 141 (476)
T ss_pred cceeeeecCCCceEEEee---------cccCcEEEEEeccccHHHHHHhhcc----ceeEEEEeCCCcEEEec
Confidence 456777889999887763 2467999999999986544322211 16678899999999866
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.32 Score=55.00 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc------CCccccCcccccccccCcceeeee
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD------LPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~------~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
...+.||+|.+.++|.... +++.++|.+|+..+.+.. .......|....+..+.......+
T Consensus 159 l~hv~ws~D~~~~Lf~~an-------------ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKAN-------------GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred ccceeecccHHHHHhhhcC-------------CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 4578899999999988743 378888887764333211 111111222111211211222222
Q ss_pred -cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 408 -SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 408 -pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
||-..+++-.+ .++-+|.+-. +...+..+ +....+.+..|+++|..|+...+
T Consensus 226 ~pdrP~lavcy~-----------nGr~QiMR~e----ND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 226 PPDRPRLAVCYA-----------NGRMQIMRSE----NDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred CCCCCEEEEEEc-----------Cceehhhhhc----CCCCCeEE-ecccEeecceecCCCcEEEEccC
Confidence 36555554211 1222332211 22233333 33355667899999999988754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.12 Score=53.16 Aligned_cols=211 Identities=18% Similarity=0.146 Sum_probs=115.0
Q ss_pred eeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC
Q 002164 160 SFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (958)
Q Consensus 160 ~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~ 239 (958)
..+.+|.|||.++ ..-.+.|++++ +.+-...+ |.+ ++.+ +.....|.+||.++|++.....+.-
T Consensus 214 lrDnTikiWD~n~---~~c~~~L~GHt--GSVLCLqy--d~r-viis--------GSSDsTvrvWDv~tge~l~tlihHc 277 (499)
T KOG0281|consen 214 LRDNTIKIWDKNS---LECLKILTGHT--GSVLCLQY--DER-VIVS--------GSSDSTVRVWDVNTGEPLNTLIHHC 277 (499)
T ss_pred cccCceEEecccc---HHHHHhhhcCC--CcEEeeec--cce-EEEe--------cCCCceEEEEeccCCchhhHHhhhc
Confidence 3346889999743 12345666654 44555554 444 3332 3446789999999998865543333
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
.. +-.+.++ +| +++..+.+ ..-.+|.+
T Consensus 278 ea----VLhlrf~-ng-~mvtcSkD-----------------------------------------------rsiaVWdm 304 (499)
T KOG0281|consen 278 EA----VLHLRFS-NG-YMVTCSKD-----------------------------------------------RSIAVWDM 304 (499)
T ss_pred ce----eEEEEEe-CC-EEEEecCC-----------------------------------------------ceeEEEec
Confidence 21 4456665 44 33332110 11224444
Q ss_pred Ec-CC-eee-ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccc
Q 002164 320 SL-DG-TVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAF 394 (958)
Q Consensus 320 ~~-~g-~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~ 394 (958)
+. +. ..+ .|... ..+..+.|+ .|+|+..+.+ .+|.+|+..+.+.. .|..+.
T Consensus 305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD-------------RTikvW~~st~efvRtl~gHk--------- 360 (499)
T KOG0281|consen 305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD-------------RTIKVWSTSTCEFVRTLNGHK--------- 360 (499)
T ss_pred cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC-------------ceEEEEeccceeeehhhhccc---------
Confidence 43 21 222 23333 556666664 6788776643 48999999876543 333221
Q ss_pred cccccCcceeeee-cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEE
Q 002164 395 NSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 395 ~~~~~~~~~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
++++-- -.|+ +++. .+..+.|.+|++ ..|.-.+.|..++.-++-+.| |.++|+..
T Consensus 361 -------RGIAClQYr~r-lvVS------------GSSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 361 -------RGIACLQYRDR-LVVS------------GSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred -------ccceehhccCe-EEEe------------cCCCceEEEEec--cccHHHHHHhchHHhhhheee--cCceeeec
Confidence 222222 1232 2221 245667889986 345566777777766777777 56677765
Q ss_pred EeccccceEEEEEcCC
Q 002164 474 SWYKTRRTRTWVISPG 489 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~ 489 (958)
.-++. .++|.+...
T Consensus 417 aYDGk--ikvWdl~aa 430 (499)
T KOG0281|consen 417 AYDGK--IKVWDLQAA 430 (499)
T ss_pred cccce--EEEEecccc
Confidence 43332 567765543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.4 Score=53.64 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=91.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+.+.++.|--|+..|.+.... ++|.++|..+.....+... ..|+..++||||++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-------------G~iilvd~et~~~eivg~v-------------d~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-------------GDIILVDPETLELEIVGNV-------------DNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecC-------------CcEEEEcccccceeeeeec-------------cCceEEEeecCCCc
Confidence 356677788888888887743 3777887766554443332 25778899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEe--CCC-----C--------------CCCCceEEEee----------------
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQ--AEP-----V--------------QGEGPEILHKL---------------- 454 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-----~--------------~g~~~~~l~~~---------------- 454 (958)
.+++.+.. ..|++.. .+| + =|.+.+++...
T Consensus 123 ~l~liT~~-------------~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 123 LLALITGR-------------QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred EEEEEeCC-------------cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 98886431 1111110 000 0 01222222110
Q ss_pred -----ccccCceeeecCCceEEEEEeccc-cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 455 -----DLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 455 -----~~~~~~~~~spDg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+..-.++.|--||++++...-... +...+.+++.++. ...+..+... -.+.++|-|.|..++...
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~-----l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEG-----LQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCcccc-----cccceeecCCCCeEeeee
Confidence 111234899999998887543222 2134556665531 1112222222 223389999998887665
Q ss_pred eeccCCCcEEEEccCCCC
Q 002164 529 KKENDEGTYILLNGNGAT 546 (958)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (958)
...+ +...+|+.++|-.
T Consensus 261 ~~~s-d~~IvffErNGL~ 277 (1265)
T KOG1920|consen 261 CKTS-DSDIVFFERNGLR 277 (1265)
T ss_pred ecCC-CCcEEEEecCCcc
Confidence 4432 3367777777644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.57 Score=50.49 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+.+..++.+...++|..+- +.+.+||+.. .+...+..+. ..+.++++.|-
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~-------------G~f~~iD~R~~~s~~~~~~lh~-------------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNV-------------GNFNVIDLRTDGSEYENLRLHK-------------KKITSVALNPV 333 (498)
T ss_pred eeeeeccccCCCccEEEeecc-------------cceEEEEeecCCccchhhhhhh-------------cccceeecCCC
Confidence 556788888888888887643 2566777763 3333332221 34567888887
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
-.+++.+ .+.++.+.+||+-.+.++..-.| ..+...+.+..|||+|-.|+.+..++. .+||..
T Consensus 334 ~p~~laT------------~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~--IRv~ds 398 (498)
T KOG4328|consen 334 CPWFLAT------------ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE--IRVFDS 398 (498)
T ss_pred Cchheee------------cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc--eEEeec
Confidence 7776653 13344566777533444331133 344556788999999888877765443 556654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.66 Score=51.50 Aligned_cols=117 Identities=11% Similarity=0.202 Sum_probs=68.2
Q ss_pred cceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEe------c
Q 002164 313 TTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------C 382 (958)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l------~ 382 (958)
...||+++| .|. ..++... +.+..+..++-...|++... .+.+..||...+. ...| .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-------------~g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-------------DGVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEeccc-------------CceEEEecchhhhhheeeecccccC
Confidence 356999999 774 2333322 55666777777666766652 3478889877432 2222 1
Q ss_pred cCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc--ccCc
Q 002164 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL--RYGG 460 (958)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~--~~~~ 460 (958)
.+++.+.. ..+.++.|+-||=.+++- ...+.++++|+ -..++-.+-.+.+ .+..
T Consensus 221 s~pg~~~~--------~svTal~F~d~gL~~aVG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 221 SHPGGDAA--------PSVTALKFRDDGLHVAVG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKK 276 (703)
T ss_pred CCcccccc--------CcceEEEecCCceeEEee-------------ccCCcEEEEEc---ccCCceeecccCCccceee
Confidence 12222111 236789999998777773 34567899996 5455544433332 3455
Q ss_pred eeeecC
Q 002164 461 ISWCDD 466 (958)
Q Consensus 461 ~~~spD 466 (958)
+.|-+.
T Consensus 277 l~~~~~ 282 (703)
T KOG2321|consen 277 LDWQDT 282 (703)
T ss_pred eccccc
Confidence 677554
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.22 Score=48.48 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-
Q 002164 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA- 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~- 780 (958)
.....+-+.+|..+.+..+. +.|+|.. ...+..+|+..+++++...++. ..|+++|||-|..-.++++.+.
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~fS--t~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGFS--TDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCcc--cceEEEecCccchHHHHHHHhcc
Confidence 34556778999998755443 3466653 2456788889999988776553 4899999999999999888543
Q ss_pred -CCceeEEEEeccCCCCCC
Q 002164 781 -PHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 781 -p~~~~a~v~~~~~~~~~~ 798 (958)
+..+.++|+.+|+.|.++
T Consensus 130 ~~r~iraaIlqApVSDrEY 148 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDREY 148 (299)
T ss_pred chHHHHHHHHhCccchhhh
Confidence 456899999999988763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.22 Score=51.34 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=57.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+-|+|.++.. + .-...+.+ +|..++...+-|+--.|+.+.. ....|.+|++.++....+..+-++ .
T Consensus 115 GvIrVid~~~-~--~~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~eg-H 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-G--QCSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVEG-H 180 (385)
T ss_pred eEEEEEecch-h--hhccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEeccccc-c
Confidence 5678888743 1 11223333 4568999999998877776543 356788889988888776543332 2
Q ss_pred cccccceEEecCCeEEEEE
Q 002164 243 NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (958)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3336689999999988855
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.08 Score=59.65 Aligned_cols=98 Identities=10% Similarity=-0.104 Sum_probs=60.5
Q ss_pred eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----cccCceeeecCCceEEEEEeccc
Q 002164 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----LRYGGISWCDDSLALVYESWYKT 478 (958)
Q Consensus 403 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----~~~~~~~~spDg~~l~~~~~~~~ 478 (958)
++...|..+.++.. ..+..|.++++ ..++.++..++. +..-.+...|.|-+|+....+++
T Consensus 601 Dm~Vdp~~k~v~t~-------------cQDrnirif~i---~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTV-------------CQDRNIRIFDI---ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred EeeeCCCcceEEEE-------------ecccceEEEec---cccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 34455655655542 34456778885 555555554443 33344677888988887765554
Q ss_pred cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 479 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|-.+|.-++ +.......+.+.+.+ +.|++|-++|+...
T Consensus 665 ----l~~~Df~sg--EcvA~m~GHsE~VTG------~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 665 ----LCFVDFVSG--ECVAQMTGHSEAVTG------VKFLNDCKHLISVS 702 (1080)
T ss_pred ----eEEEEeccc--hhhhhhcCcchheee------eeecccchhheeec
Confidence 666666664 333333445555555 78999999998776
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=64.79 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=52.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +....++-+||.....+........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~--- 154 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHT--- 154 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCc---
Confidence 5899999964 1 3356666644 35777889998876533 3346677777766433333333222
Q ss_pred cccccceEEecCCeEEEEE
Q 002164 243 NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (958)
..+..++++|||++++..
T Consensus 155 -~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 155 -RVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -ceeEEEeecCCCceeecc
Confidence 226788999999999954
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.043 Score=52.72 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=60.2
Q ss_pred CceEEEEECCCCC-cCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc-ccchhhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEF-KSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~a 746 (958)
+..++|++||.+. .++.|+-.+.-+-+--.+.-..+...-.+.||.|+..+..+-+-.-+. ..+..+....++-+.-+
T Consensus 100 ~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yv 179 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYV 179 (297)
T ss_pred ccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHH
Confidence 3568999999532 222222222211111111122345556678999887444222111111 11222233334444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..+++.. ..++.|+++-||+||.+++.++.+.|+
T Consensus 180 w~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 180 WKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 4444443 456789999999999999999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.22 Score=55.90 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=96.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
++..+.+--+|+.++..+.+ +.+.+|+...+++ .-...|.. +..
T Consensus 75 WVNDiiL~~~~~tlIS~SsD---------------------------------tTVK~W~~~~~~~-~c~stir~--H~D 118 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSD---------------------------------TTVKVWNAHKDNT-FCMSTIRT--HKD 118 (735)
T ss_pred HHhhHHhhcCCCceEEecCC---------------------------------ceEEEeecccCcc-hhHhhhhc--ccc
Confidence 56778888999988888876 5889999865431 12233332 234
Q ss_pred cccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-------cccccceEEecCCeEEEEE
Q 002164 190 KLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~l~~~ 261 (958)
++...+. .++...+|- +.=...|++||+.+|.++.+........ ...+.+++-.+.|..|+..
T Consensus 119 YVkcla~~ak~~~lvaS---------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVAS---------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEe---------cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 6777766 555554444 2336689999999886643322221110 0012233333445333322
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~ 338 (958)
. ....|-++|- ++ +...|-.+ .++..+.
T Consensus 190 -----------------------g--------------------------tek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 190 -----------------------G--------------------------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred -----------------------C--------------------------cccceEEeccccccceeeeeccccceEEEE
Confidence 0 1233566666 54 44455544 7888899
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
.++||.+++..+.+ +.|.+||+.-
T Consensus 221 ~~dDGt~~ls~sSD-------------gtIrlWdLgq 244 (735)
T KOG0308|consen 221 VNDDGTRLLSASSD-------------GTIRLWDLGQ 244 (735)
T ss_pred EcCCCCeEeecCCC-------------ceEEeeeccc
Confidence 99999999988744 4899999973
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.042 Score=62.64 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=83.7
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc--C--cHHHHHHHHCCcEEEE
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--G--STSVLLWLARGFAILG 717 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~la~~G~~vl~ 717 (958)
+.+....+..+..|+|.-.+ ++. ..|+||++.|||.++.-.+.....+|-..... . ..-...|.+. ..+|.
T Consensus 16 l~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~ 90 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLF 90 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEE
T ss_pred EecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEE
Confidence 44544467889888886544 333 37999999999988766655555555444311 0 0111234444 44555
Q ss_pred cCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHh----C------CCc
Q 002164 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A------PHL 783 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~----~------p~~ 783 (958)
+|..-..|+........ -.....+|+..++..... .+.....++.|+|.||||..+-.+|.. . +=.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 44323345443322222 234556676666665444 455566689999999999987666542 2 123
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
++++++.+|..+
T Consensus 171 LkGi~IGng~~d 182 (415)
T PF00450_consen 171 LKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEESE-SB
T ss_pred cccceecCcccc
Confidence 889999888654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.42 Score=48.74 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.5
Q ss_pred eeeEeceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEE
Q 002164 159 MSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVA 224 (958)
Q Consensus 159 ~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~ 224 (958)
.+.+....||.+++ | .-....+++. +.++...|+|.|..++..+ +++..+||.+
T Consensus 166 ASADhTA~iWs~Es-g--~CL~~Y~GH~--GSVNsikfh~s~~L~lTaS-------GD~taHIW~~ 219 (481)
T KOG0300|consen 166 ASADHTARIWSLES-G--ACLATYTGHT--GSVNSIKFHNSGLLLLTAS-------GDETAHIWKA 219 (481)
T ss_pred cccccceeEEeecc-c--cceeeecccc--cceeeEEeccccceEEEcc-------CCcchHHHHH
Confidence 34445678888865 2 2233444533 5799999999887666644 6677888874
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.089 Score=52.48 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEeccCCCCCC-CC------CCcccc-
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTL-TP------FGFQNE- 806 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~-~~------~~~~~~- 806 (958)
..=+..++.+|.+++.+ .++-++||||||.....++..+. +.++..|.+++.++... .+ ......
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 44466888999999766 48999999999999988887541 23677777777776111 11 001110
Q ss_pred -cchhhhcHHHHHhcCcccccCCC--CCCEEEEeeCC------CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002164 807 -DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEE------DNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (958)
Q Consensus 807 -~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~------D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H 875 (958)
..++. ..|... +...+ ..-+|++.|+- |..|| ...+...+..+...+..+.-.+|+| +.|
T Consensus 197 ~~~t~y---~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 197 LIKTPY---YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred ccCcHH---HHHHHh----cceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 00110 111111 11111 35689999975 45677 6778888888888887777777876 467
Q ss_pred cCCCcccHHHHHHHHHHHHHH
Q 002164 876 GYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.-. .++ ..+...+..||..
T Consensus 268 s~l-hen-~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL-HEN-PTVAKYVKNFLWE 286 (288)
T ss_pred hcc-CCC-hhHHHHHHHHhhc
Confidence 643 333 4556667777754
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.5 Score=43.57 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=39.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
.+++..+|+||.+.|..+. +....|.-++.+|.-.+.+ +...+ .+.+.|.-+|++.+.
T Consensus 86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~n~fvi~ 145 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGGNQFVIV 145 (316)
T ss_pred ccccceeeCCCcceEEEec--------CCCceEEEEecCCceEEEecccccCC------hhHeEEecCCEEEEE
Confidence 3589999999998877654 3466788788776555543 22222 457889888876663
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.02 Score=50.27 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=46.5
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..|+||+.++.|+..| +..++++.+.|.. .+++..++.||.... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 5899999999999999 9999999998875 489999999999753 2223444555555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.1 Score=47.97 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCC-Cce-eeccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKA-RPLFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~-~~lt~~~~ 239 (958)
..+.+|+..... .....+..... ..+....+ ++++..++... ......+.+++..+ ... ..+.....
T Consensus 87 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~ 156 (466)
T COG2319 87 GTIKLWDLDNGE--KLIKSLEGLHD-SSVSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSE 156 (466)
T ss_pred CcEEEEEcCCCc--eeEEEEeccCC-CceeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCcc
Confidence 367777764310 02223322111 13444555 88888444432 11234677777765 333 33333222
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. +..+.|+|+++.++.... ....+.++
T Consensus 157 ~-----v~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~ 183 (466)
T COG2319 157 S-----VTSLAFSPDGKLLASGSS------------------------------------------------LDGTIKLW 183 (466)
T ss_pred c-----EEEEEECCCCCEEEecCC------------------------------------------------CCCceEEE
Confidence 2 568999999996654410 01235555
Q ss_pred Ec-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE--eccCCccccCcccc
Q 002164 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAF 394 (958)
Q Consensus 320 ~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~--l~~~~~~~~~p~~~ 394 (958)
++ .+. ...+... ..+..++|+|+|+.++.... .++.+.+||...+.... +..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~--------- 242 (466)
T COG2319 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS------------SDGTIRLWDLSTGKLLRSTLSGHS--------- 242 (466)
T ss_pred EcCCCceEEeeccCCCceEEEEEcCCcceEEEEec------------CCCcEEEEECCCCcEEeeecCCCC---------
Confidence 55 433 3333333 67788999999994444411 13467788766333222 11110
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEE
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
... ...|+|++..++.. .....+.+++. ..... ...+......+..+.|+|++..++..
T Consensus 243 ----~~~-~~~~~~~~~~~~~~-------------~~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 243 ----DSV-VSSFSPDGSLLASG-------------SSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred ----cce-eEeECCCCCEEEEe-------------cCCCcEEEeee--cCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 111 11699999444421 34556777775 11222 12221224456667899988888874
Q ss_pred EeccccceEEEEEcCCC
Q 002164 474 SWYKTRRTRTWVISPGS 490 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~ 490 (958)
. .++. ..+| +...
T Consensus 303 ~-~d~~-~~~~--~~~~ 315 (466)
T COG2319 303 S-SDGT-VRLW--DLET 315 (466)
T ss_pred e-CCCc-EEEE--EcCC
Confidence 3 3332 5677 5444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.81 Score=52.67 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=66.0
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..++++.|||--...+++..+ .+.+.+||+.-- -.++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 678899999944333333322 348999999732 223333332 23356889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEE-EeccccceEEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYE-SWYKTRRTRTWVI 486 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~l~~~ 486 (958)
+.+|+-- +-+..+-+|+. ++.....+ ...-..+..+.|-|+-++.+.+ +-......++|.+
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 8887761 22335778885 43333333 2334567789999997764443 3333323445544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.8 Score=47.48 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=35.4
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcccc-----------CCCCC-CceEeccCCceEE
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY-----------SDPGS-PMMRRTSTGTYVI 525 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~spdG~~l~ 525 (958)
+..+..|.|.|+|+++.+-.+ .++++|.... ..++++.....+... ...+. .|++.|-||++|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 456789999999999988775 5777777665 355554322111110 01122 3578999999999
Q ss_pred EEe
Q 002164 526 AKI 528 (958)
Q Consensus 526 ~~~ 528 (958)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 886
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.066 Score=58.79 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=87.1
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTP 722 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~ 722 (958)
|.+.++...+=+.|.+..+.... -|+.|++-|-.... . .|..........|| +.|-.|+. .-
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEgp~~--------~---~wv~~~~~~~~~~AkkfgA~v~~---lE 125 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEGPES--------D---KWVGNENLTWLQWAKKFGATVFQ---LE 125 (514)
T ss_pred hhcchhhhhhhheeeccccccCC---CceEEEEcCCCCCC--------C---CccccCcchHHHHHHHhCCeeEE---ee
Confidence 34445555555667776653222 69999997732111 0 12111222233455 46888887 33
Q ss_pred CCCCCCcccc---------hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 723 IIGEGDEEAN---------DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 723 ~~G~G~~~~~---------~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
.+=||.+..- .-...+.+.|+...|+.+..+ +.-|+.+.+.+|.||-|.|++|+=..+|+++.++|+.++
T Consensus 126 HRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 126 HRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred eeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 4445544211 112457789999999998776 456667999999999999999999999999999998877
Q ss_pred CC
Q 002164 793 AY 794 (958)
Q Consensus 793 ~~ 794 (958)
+.
T Consensus 206 pv 207 (514)
T KOG2182|consen 206 PV 207 (514)
T ss_pred ce
Confidence 54
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.011 Score=64.92 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=66.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.-+|+++|||.|. ..+...+. .+.+.|+. .|.-|+.++| +.+++..++...+++.-|.-
T Consensus 396 ~sli~HcHGGGfV--------AqsSkSHE----~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGFV--------AQSSKSHE----PYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCcee--------eecccccc----HHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 4689999998643 32222222 33556664 6999998777 66777788899999999999
Q ss_pred HHHHcCC---CCCCcEEEEEeChHHHHHHHHHHh
Q 002164 749 EVVRRGV---AHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 749 ~l~~~~~---~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
|++++.. -..+||++.|.|+||.+.+-++.+
T Consensus 456 W~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 9998621 245899999999999987766653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.52 Score=53.18 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=21.9
Q ss_pred eEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEeec
Q 002164 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIH 352 (958)
Q Consensus 315 ~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~ 352 (958)
.|..+|. +++ .+++.- ..+..+.||+||+++++.+.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCC
Confidence 4788888 664 445543 236788999999999999744
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.9 Score=44.61 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCceEEEEEcCCCcee--eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccch
Q 002164 217 SKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (958)
Q Consensus 217 ~~~~l~~~~~~~g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 294 (958)
..++|-++++..-+.. .+....... +.-++..-+|..||.++.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~----Iacv~Ln~~Gt~vATaSt------------------------------- 201 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSD----IACVALNLQGTLVATAST------------------------------- 201 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCc----eeEEEEcCCccEEEEecc-------------------------------
Confidence 3578888887764442 222222222 567778899999987611
Q ss_pred hhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeE
Q 002164 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVG 369 (958)
Q Consensus 295 ~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~ 369 (958)
..+-|-+.|. +| ....+-.+ ..+..++||||+.+|+++++.+ ++.
T Consensus 202 -----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlH 251 (346)
T KOG2111|consen 202 -----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLH 251 (346)
T ss_pred -----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEE
Confidence 1122445566 66 33344333 6778999999999999999653 788
Q ss_pred EEeccC
Q 002164 370 VWTTDG 375 (958)
Q Consensus 370 l~d~~~ 375 (958)
++.+..
T Consensus 252 iF~l~~ 257 (346)
T KOG2111|consen 252 IFSLRD 257 (346)
T ss_pred EEEeec
Confidence 887764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.2 Score=43.92 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+++..|+||.+.|+.+.+..+ .|.-.+.+|.-.+.+.-.-. .....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~------------~iVElt~~GdlirtiPL~g~------------~DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPA------------AIVELTKEGDLIRTIPLTGF------------SDPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCCc------------eEEEEecCCceEEEeccccc------------CChhHeEEecCCE
Confidence 56889999999999998876532 55555666776666543221 1234577777776
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC------ceEEEe--e-ccccCceeeecCCceEEEEEeccccceE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------PEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
..+. +. ....+|.+.+++ ++.. ...|.. . +-...+++|+|..+.+++..+++. ..
T Consensus 142 fvi~--dE-----------R~~~l~~~~vd~-~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~ 205 (316)
T COG3204 142 FVIV--DE-----------RDRALYLFTVDA-DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IG 205 (316)
T ss_pred EEEE--eh-----------hcceEEEEEEcC-CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cE
Confidence 5444 11 123455555411 2111 111111 1 334567999999999999988877 67
Q ss_pred EEEEcC
Q 002164 483 TWVISP 488 (958)
Q Consensus 483 l~~~~~ 488 (958)
||.++.
T Consensus 206 I~~~~~ 211 (316)
T COG3204 206 IFEVTQ 211 (316)
T ss_pred EEEEec
Confidence 888873
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.4 Score=45.81 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=43.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC-eEEEEE
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TLLVCT 261 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~l~~~ 261 (958)
+...+|.-.=+.|+++. .....|.+||+++|++.+.+...+.. +..+.|.|.- ..|+..
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLSG 305 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEec
Confidence 45678887888888853 34678999999999998877655444 7899999865 455533
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.027 Score=57.09 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEeccC
Q 002164 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (958)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (958)
.....|++|+.+.-.-.+++|.+.|||.||++|.++++..+ +++..+.+..|+
T Consensus 66 ~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 66 PQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 34456777776642223446999999999999999998742 467788777653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.2 Score=44.13 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=61.5
Q ss_pred CceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCe-EEEEeCCCC
Q 002164 365 PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDI-IYTQQAEPV 443 (958)
Q Consensus 365 ~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 443 (958)
.+.+.+.|+...... .|...+.+...+.-++.+-+|..++-. +..+. |.++|. .
T Consensus 158 ~GqvQi~dL~~~~~~----------~p~~I~AH~s~Iacv~Ln~~Gt~vATa-------------StkGTLIRIFdt--~ 212 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPN----------APSIINAHDSDIACVALNLQGTLVATA-------------STKGTLIRIFDT--E 212 (346)
T ss_pred cceEEEEEhhhcCcC----------CceEEEcccCceeEEEEcCCccEEEEe-------------ccCcEEEEEEEc--C
Confidence 468999998754431 111112222344567788888877763 34444 677885 4
Q ss_pred CCCCceEEEee--ccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 444 QGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 444 ~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|.....+-.+ ...+..++||||+.+|+.+++.++ .+++.+..
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT--lHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT--LHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe--EEEEEeec
Confidence 55555555322 345667999999999999988776 56666654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=45.33 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=45.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~~~lt~~~~~~ 241 (958)
.++..+.+..++..-....++. ....-...+||......|.... ...+-+||+..- .+-.-.......
T Consensus 180 ~~Vf~y~id~~sey~~~~~~a~--t~D~gF~~S~s~~~~~FAv~~Q---------dg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 180 RRVFRYAIDDESEYIENIYEAP--TSDHGFYNSFSENDLQFAVVFQ---------DGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred CcceEEEeCCccceeeeeEecc--cCCCceeeeeccCcceEEEEec---------CCcEEEEEecccccchhhhcccCCC
Confidence 5677777755442211112222 1123466789987777776552 334555555432 211111111112
Q ss_pred ccccccceEEecCC--eEEEEE
Q 002164 242 LNAIFDNFVWVNNS--TLLVCT 261 (958)
Q Consensus 242 ~~~~~~~~~wspDG--~~l~~~ 261 (958)
.++.+..+.||+-| .+|+|+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred CCCceEEEEecCCCcceEEEEe
Confidence 34458899999876 566665
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.97 Score=46.45 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=80.6
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc-CcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~vl~ 717 (958)
.++..+++.-| .++..++--+ +++.|++|-.|.-...... .|... ....++.+..+ |+|+.
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~s----------cFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHKS----------CFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchHh----------HhHHhhcCHhHHHHHhh-eEEEe
Confidence 34556676664 4777777421 1246889988873211110 01111 12334556667 88888
Q ss_pred cCCCCCCCCCCc--ccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 718 GPTTPIIGEGDE--EAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 718 ~~~~~~~G~G~~--~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
++ ..|+-.. ..+. ...+...+++..+++++ .-+.|.-+|--+|+++-...|..+|+++-++|+++
T Consensus 84 V~---~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f------~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn 154 (326)
T KOG2931|consen 84 VD---APGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF------GLKSVIGMGVGAGAYILARFALNHPERVLGLVLIN 154 (326)
T ss_pred cC---CCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc------CcceEEEecccccHHHHHHHHhcChhheeEEEEEe
Confidence 43 3443221 1122 22456677777777764 23578899999999999999999999999999998
Q ss_pred cCC
Q 002164 792 GAY 794 (958)
Q Consensus 792 ~~~ 794 (958)
+..
T Consensus 155 ~~~ 157 (326)
T KOG2931|consen 155 CDP 157 (326)
T ss_pred cCC
Confidence 753
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.69 E-value=8 Score=42.14 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=66.2
Q ss_pred ceeEEEeccCceEEEeccCCccc-cCcc--cccccccCcceeeeecCCCCceEEEEec---cCCCcccccccCCeEEEEe
Q 002164 366 RQVGVWTTDGIFVRELCDLPLAE-DIPI--AFNSVRKGMRSINWRSDKPSTLYWAETQ---DGGDAKVEVTPRDIIYTQQ 439 (958)
Q Consensus 366 ~~i~l~d~~~~~~~~l~~~~~~~-~~p~--~~~~~~~~~~~~~~spDG~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~ 439 (958)
..|+.++.+|...+.+.. |..- .... .......+..+++++|||+.|+...+.. ++.......+..-.|+.++
T Consensus 112 p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred CEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEec
Confidence 478888888665555422 1110 0000 0001124678899999999888776644 2211111112223455665
Q ss_pred CCCCC-CCCceEE-E--e------eccccCceeeecCCceEEEEEec---cccceEEEEEcCCC
Q 002164 440 AEPVQ-GEGPEIL-H--K------LDLRYGGISWCDDSLALVYESWY---KTRRTRTWVISPGS 490 (958)
Q Consensus 440 ~~~~~-g~~~~~l-~--~------~~~~~~~~~~spDg~~l~~~~~~---~~~~~~l~~~~~~~ 490 (958)
. .. +....+. . . ....+..+.+-+|++.|+..... .....+||.+++..
T Consensus 191 ~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 191 P--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred C--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 3 22 2122332 1 1 23456678999999988777652 23458899999865
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.077 Score=54.73 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEE
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (958)
.-|+. ....|++.........+...+...++|..+ ++. ..+.+.|+|+||++|..+|.+- .+.++-+++
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~--QP~---GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRV--QPE---GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHh--CCC---CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55665 444555433233334455655555555433 332 3789999999999999998863 223555555
Q ss_pred eccC
Q 002164 790 RSGA 793 (958)
Q Consensus 790 ~~~~ 793 (958)
+...
T Consensus 99 lD~~ 102 (257)
T COG3319 99 LDAV 102 (257)
T ss_pred eccC
Confidence 5443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=5.7 Score=40.71 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=93.7
Q ss_pred eeccccCceeeecCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeec
Q 002164 453 KLDLRYGGISWCDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (958)
Q Consensus 453 ~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (958)
....+.-.++++|-. +.++|...-+ .-.+++|+.+. .+++.+......-.|+. -.|||||++|+.+.++.
T Consensus 65 ~lpaR~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~LYATEndf 135 (366)
T COG3490 65 ALPARGHGIAFHPALPRAVAFARRPG---TFAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLLYATENDF 135 (366)
T ss_pred ecccccCCeecCCCCcceEEEEecCC---ceEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEEEeecCCC
Confidence 334556678899984 5577775544 35778888886 34555544444444442 34899999998887543
Q ss_pred cCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCC-----
Q 002164 532 NDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKT----- 606 (958)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~----- 606 (958)
|. ++..|-+||.. ....++-+-.. .-+.. .+..+.+||+.+++...+..
T Consensus 136 d~----------------~rGViGvYd~r-~~fqrvgE~~t--------~GiGp-Hev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 136 DP----------------NRGVIGVYDAR-EGFQRVGEFST--------HGIGP-HEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred CC----------------CCceEEEEecc-cccceeccccc--------CCcCc-ceeEEecCCcEEEEeCCceeccccc
Confidence 22 33457778775 23333322111 00111 13567888888877554322
Q ss_pred ---------CCceEEEEECCCCCeeEeecCCCCCC-CCCCCcEEEEEEEeCCCeEEEEEEEe
Q 002164 607 ---------ENTQYYIQSWPDKKSCQITDFPHPYP-QLASLQKELIKYQRKDGVQLSATLYL 658 (958)
Q Consensus 607 ---------~p~~~~~~d~~~g~~~~Lt~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~l~~ 658 (958)
..+.+.+++..+|+...-. .+| .+..+..+.+.+- .||+...+.-|.
T Consensus 190 gR~~lNldsMePSlvlld~atG~liekh----~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEKH----TLPASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhhc----cCchhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 2355666776666532211 122 3444455555554 488877777776
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.21 Score=51.27 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CceeEEEEeccCCCCCCCCCCcccccch
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 809 (958)
...++...++.|.+.. ...+|.|++||||+.+.+.++... + .+|..+|+.+|=.+..
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d------------ 140 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND------------ 140 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH------------
Confidence 3455666666666652 346999999999999999877642 1 2466677776643310
Q ss_pred hhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCC
Q 002164 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (958)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (958)
.+...- ..+.+...++.+.+..+|..
T Consensus 141 ------~f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 141 ------VFRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred ------HHHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 010000 02223347889999999865
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.4 Score=63.60 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=48.5
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (958)
..++.|+.+ ...|++..............++.+.++.+. ...++.++|||+||.++..+|.+ .++++..
T Consensus 1092 ~~~~~v~~~---~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGI---QSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 456888873 444555432223345556666655554321 12479999999999999999885 4677888
Q ss_pred EEEecc
Q 002164 787 GIARSG 792 (958)
Q Consensus 787 ~v~~~~ 792 (958)
++...+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 877664
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.051 Score=57.93 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe-ccC
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR-SGA 793 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~~~ 793 (958)
.++..+|....+..|++........|+++|.||||++++|+=.++|+.+.++.+. +|+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCce
Confidence 4577899999999998875556678999999999999999999999988777654 444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.5 Score=53.31 Aligned_cols=87 Identities=18% Similarity=0.384 Sum_probs=46.7
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
|..|.+.++. .|.+||.+++ ..+++.. ..+..+.||+||+.+++.
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v---------------~~vk~V~Ws~~g~~val~----- 162 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRIDV---------------SAVKYVIWSDDGELVALV----- 162 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE-----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEEec---------------CCCcEEEEECCCCEEEEE-----
Confidence 8888777632 5999999854 4444432 124678999999999985
Q ss_pred CCCcccccccCCeEEEEeC--C-----CCCCC--CceEEEeeccccCceeeecCCceEEEEE
Q 002164 422 GGDAKVEVTPRDIIYTQQA--E-----PVQGE--GPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~--~-----~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
..+.+|+++. + +.+|- ....+......+.+..|-.| .++|+.
T Consensus 163 ---------t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 163 ---------TKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ---------eCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 2334565553 0 00111 22333443667778888766 667764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.078 Score=60.02 Aligned_cols=112 Identities=10% Similarity=0.103 Sum_probs=67.2
Q ss_pred eEEEEEc-CC-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 315 QLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 315 ~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
.|-++|+ .+ ..+.|+.+ ..+.++.|+|=|.+.+-.+. +.++-+||...+.....
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-------------dtd~~iwD~Rk~Gc~~~---------- 149 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST-------------DTDLKIWDIRKKGCSHT---------- 149 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc-------------cccceehhhhccCceee----------
Confidence 4667777 44 56777777 77788899999988854442 34788898873322111
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
+++....++.+.|+|||++++-- ++.+.+-+||+ ..|+-..........+..+.|.|-
T Consensus 150 --~~s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 150 --YKSHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred --ecCCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCch
Confidence 11222456788999999987651 33456777875 233322233334445555555554
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.2 Score=53.59 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 697 ~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
|..........|.++|+-|+-+|- .-| +.....-+....|+...+++..++ -...++.++|+|+|+-+--.+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvds---LRY---fW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDS---LRY---FWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeeh---hhh---hhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHH
Confidence 444555677789999999998433 222 122222357788888999888775 234699999999999876655
Q ss_pred HHhCCC
Q 002164 777 LAHAPH 782 (958)
Q Consensus 777 a~~~p~ 782 (958)
-.+-|.
T Consensus 344 ~n~L~~ 349 (456)
T COG3946 344 YNRLPP 349 (456)
T ss_pred HHhCCH
Confidence 555544
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=3.2 Score=48.26 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=79.7
Q ss_pred eEEEEEcCCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCccc
Q 002164 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~ 393 (958)
.||.....+..+.+......+.+.|+++| ++....+.. ++.+..+.-++. ....... . ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~---~---~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPT---V---TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccc---e---eec
Confidence 46666655555555555567899999998 776554321 123433333221 1000000 0 000
Q ss_pred cccccc-CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-----ccccCceeeecCC
Q 002164 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (958)
Q Consensus 394 ~~~~~~-~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~spDg 467 (958)
...... .+..+..|+||-++++.++. +...+|++.-+.-...+.++.|+.. .....++.|..++
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 011112 26789999999999997543 2233455433211234455566332 2456778999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..++.....+ .+..++++.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8666554333 3356777777554
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.84 E-value=7.6 Score=47.41 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
..|||.+.+++..+.............+++++.++. .......+.. .+..+.|+|.|+.|+|...
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLHPPEYEGS---KIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-cccCcccCCC---eeEEEEEcCCCCEEEEEEe
Confidence 778999999997653211112224455666666666 1111111111 1567889999988888843
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.31 Score=48.68 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=35.3
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+.++..++|.++| ......+-+... |..+++ ++ .||.-...-....+.++|.+-|++.
T Consensus 309 ~ivv~A~~D~Yip--r~gv~~lQ~~WP--g~eVr~--~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIP--RTGVRSLQEIWP--GCEVRY--LE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCcccc--ccCcHHHHHhCC--CCEEEE--ee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 5677899999997 543444444332 445554 44 4896433333456667788887774
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.5 Score=49.19 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=36.6
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-Ccee--eccCCCCccccc-cccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~--~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (958)
+.....|+|.++| +|..+.+ +....|.++..++ ++.. .........+.. .|..+..|+||-+++..
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi 451 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVI 451 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEE
Confidence 3468899999999 6665432 1223666655432 2211 000000111111 27799999999888876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.2 Score=50.76 Aligned_cols=29 Identities=0% Similarity=-0.110 Sum_probs=19.8
Q ss_pred eeecCCCccccccccCCCCcEEEEEeecC
Q 002164 325 VKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (958)
Q Consensus 325 ~~~l~~~~~~~~~~~SpDGk~l~~~~~~~ 353 (958)
+..+..+-.+....|+++|..|++-.+..
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCcc
Confidence 33333333456789999999999887553
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=3 Score=47.66 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=106.2
Q ss_pred cCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccceee
Q 002164 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (958)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w 196 (958)
+-|+..++|... ..-|+..|.+++..+..+.+..++- ...++.+.++.+|.... +.. .+.+++ ..+..+..
T Consensus 78 ~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~--~l~gH~--asVWAv~~ 148 (745)
T KOG0301|consen 78 GMDTTIIVFKLS-QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVY--SLQGHT--ASVWAVAS 148 (745)
T ss_pred cccceEEEEecC-CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhc--ccCCcc--hheeeeee
Confidence 444444444433 4677888999999998888766654 34466678899998722 111 233332 45666666
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (958)
-|+++. +. +.....|++|. +|+..+........ +..++..|++..|-+.
T Consensus 149 l~e~~~-vT---------gsaDKtIklWk--~~~~l~tf~gHtD~----VRgL~vl~~~~flScs--------------- 197 (745)
T KOG0301|consen 149 LPENTY-VT---------GSADKTIKLWK--GGTLLKTFSGHTDC----VRGLAVLDDSHFLSCS--------------- 197 (745)
T ss_pred cCCCcE-Ee---------ccCcceeeecc--CCchhhhhccchhh----eeeeEEecCCCeEeec---------------
Confidence 777732 22 33466788887 45555555544443 7788999988766654
Q ss_pred CCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCCC-ccccccccCCCCcEEEEEeecCC
Q 002164 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRP 354 (958)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~ 354 (958)
..+.|..++++|+ ....... ..+++++..+++..|+.+..+
T Consensus 198 -----------------------------------NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED-- 240 (745)
T KOG0301|consen 198 -----------------------------------NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED-- 240 (745)
T ss_pred -----------------------------------CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC--
Confidence 2345667777554 3344333 556677767777777776643
Q ss_pred ccccccCCCCCceeEEEecc
Q 002164 355 YSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 355 ~~~~~~~~~~~~~i~l~d~~ 374 (958)
+.+.+|+.+
T Consensus 241 -----------rtlriW~~~ 249 (745)
T KOG0301|consen 241 -----------RTLRIWKKD 249 (745)
T ss_pred -----------ceEEEeecC
Confidence 489999877
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.35 Score=51.31 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCceeEEEEecc
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----PHLFCCGIARSG 792 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----p~~~~a~v~~~~ 792 (958)
.+-..+++..+.+|.+...+ ++|.|+.||||.++++.++-+ . +..|+-+|..+|
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaP 232 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAP 232 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCC
Confidence 45577888999999988654 589999999999999876643 2 234666677666
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.1 Score=41.72 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEecc
Q 002164 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSG 792 (958)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~ 792 (958)
..+..-++++.+.- ....||.++|||-|++|.+.++-.... .+..+++.-|
T Consensus 93 ~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 93 DQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred hHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 33455566666642 234699999999999999999874322 2444554444
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.34 Score=51.08 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH---CC------cEEEEc
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RG------FAILGG 718 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G------~~vl~~ 718 (958)
.|.++|-....|+.-+ .++..+|++| +||+|...+ .|. .+...|.. +| |-|++
T Consensus 132 eGL~iHFlhvk~p~~k-~~k~v~PlLl-~HGwPGsv~-----------EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKK-KKKKVKPLLL-LHGWPGSVR-----------EFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCccc-cCCcccceEE-ecCCCchHH-----------HHH----hhhhhhcCccccCCccceeEEEec-
Confidence 6788888888887532 3334567655 899874321 111 11212322 12 67787
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
....|||-+.+....+-..++ +..+++- +...++ ++.+|-|.-+|..++..+|..+|+.+.+.-+
T Consensus 194 --PSlPGygwSd~~sk~GFn~~a-~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAAA-TARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred --cCCCCcccCcCCccCCccHHH-HHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 455788887665322212211 1222222 334444 6999999999999999999999998876644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.12 E-value=11 Score=42.89 Aligned_cols=199 Identities=12% Similarity=0.137 Sum_probs=114.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+-.+.+.|---|++-.-- +++|-+|+-++....+-....+.. +....|-+--.+|+..+
T Consensus 15 RVKsVd~HPtePw~la~Ly---------nG~V~IWnyetqtmVksfeV~~~P----vRa~kfiaRknWiv~Gs------- 74 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY---------NGDVQIWNYETQTMVKSFEVSEVP----VRAAKFIARKNWIVTGS------- 74 (794)
T ss_pred ceeeeecCCCCceEEEeee---------cCeeEEEecccceeeeeeeecccc----hhhheeeeccceEEEec-------
Confidence 5666777887788876442 445555555554443322222222 55777777777888661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
...+|-+++. +++ ++.+..+ +.++.++.+|.--++
T Consensus 75 ------------------------------------------DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 75 ------------------------------------------DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ------------------------------------------CCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence 1245667777 664 4444444 778899999998888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+.++++. .|.+|+-+++ ...+. |.++...+-.++|.|....-...
T Consensus 113 LtsSDDm-------------~iKlW~we~~wa~~qt------------feGH~HyVMqv~fnPkD~ntFaS--------- 158 (794)
T KOG0276|consen 113 LTSSDDM-------------TIKLWDWENEWACEQT------------FEGHEHYVMQVAFNPKDPNTFAS--------- 158 (794)
T ss_pred EecCCcc-------------EEEEeeccCceeeeeE------------EcCcceEEEEEEecCCCccceee---------
Confidence 8777553 5666766543 22221 12333455677888854433221
Q ss_pred ccccccCCeEEEEeCCCCCC-CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.+-+..|-+|.+ .. -..-.|..+...+..+.|-+-|.+-+..+..+..-..+|.+..++
T Consensus 159 ---~sLDrTVKVWsl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 159 ---ASLDRTVKVWSL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ---eeccccEEEEEc---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 133456777775 22 223455666666777888776654444333333336677665443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=18 Score=40.18 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred EEEEEc-C-C-eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccC
Q 002164 316 LVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDI 390 (958)
Q Consensus 316 l~~~~~-~-g-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~ 390 (958)
+..++. . + ....+... ..+..+.|+|+++.++.... ..+.+.+|++..+ ....+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------- 196 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAG------- 196 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeecc-------
Confidence 555555 3 2 33334333 56678999999996665542 1348899998853 2233222
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE--EEeeccccCceeeecCCc
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSL 468 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~--l~~~~~~~~~~~~spDg~ 468 (958)
....+..+.|+|+|+.++.. .+....+.+|+. ..+.... +....... ...|+|++.
T Consensus 197 ------~~~~v~~~~~~~~~~~~~~~------------~~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 197 ------HTDPVSSLAFSPDGGLLIAS------------GSSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred ------CCCceEEEEEcCCcceEEEE------------ecCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCCC
Confidence 11345778999999833221 022334556664 2222222 22222221 127999996
Q ss_pred eEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 469 ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
.++.. ..+. ..++|.+.... . ...........+.. ..|+|++..++..
T Consensus 255 ~~~~~-~~d~-~~~~~~~~~~~--~-~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 255 LLASG-SSDG-TIRLWDLRSSS--S-LLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred EEEEe-cCCC-cEEEeeecCCC--c-EEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 55522 2222 24555444333 1 11222122222222 5688888777763
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=9.5 Score=44.35 Aligned_cols=140 Identities=10% Similarity=0.014 Sum_probs=77.2
Q ss_pred EEEEEcCCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccc
Q 002164 316 LVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 316 l~~~~~~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~ 394 (958)
|++-...+..+.+........+.|+++| ++....+.. ...+.... .+....+. .+...
T Consensus 357 l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~-v~~~~------ 415 (557)
T PRK13615 357 WSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVA-VSWTA------ 415 (557)
T ss_pred EEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEee-ccccC------
Confidence 4433334455555554567899999999 776554321 12222221 12222221 11111
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-Ee------eccccCceeeecCC
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDS 467 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~------~~~~~~~~~~spDg 467 (958)
...+..+..|+||-++++.++. ....+|++.-+.- +++.++.| +. ......++.|..++
T Consensus 416 ---~~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 416 ---TGRVVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred ---CCeeEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 1246789999999999997553 2334565543322 34444455 22 22356678999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+..+.....+ ....++++.+++.
T Consensus 482 ~laVl~~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTLAPD-GERQVELHQVGGP 504 (557)
T ss_pred EEEEEeccCC-CCceEEEEECCCc
Confidence 8655553333 3356888888874
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.64 Score=52.51 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=80.4
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcC-----c---HHHHHHHHC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG-----S---TSVLLWLAR 711 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~la~~ 711 (958)
-.+.+....+..+..+++.... ++. ..|+|+++-|||.++...+.....+|-....-. . .-...|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3455554456677777775432 222 379999999999887655444444443332110 0 001123443
Q ss_pred CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHh----C----
Q 002164 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~----~---- 780 (958)
- .++.+|..-..|+....... ..-....+|+..++....+ .+.....++.|+|.||||..+-.+|.. .
T Consensus 118 a-nllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 A-NIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred C-cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 3 34443433334443321111 1112334566666554433 444455689999999999866555542 1
Q ss_pred -CC-ceeEEEEeccCCC
Q 002164 781 -PH-LFCCGIARSGAYN 795 (958)
Q Consensus 781 -p~-~~~a~v~~~~~~~ 795 (958)
+. -++++++.+|..+
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 11 3678888887654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.59 E-value=4.6 Score=44.90 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=25.2
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
..+++++. +++.+.+..+ .....++|+|+|+.++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEE
Confidence 56999998 6666666655 5556889999997643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=92.56 E-value=14 Score=37.93 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=28.5
Q ss_pred cceEEEEEc-CCeeeecCC-CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 313 TTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
...|+.+|. +|+...-.. ...+... ...++..|++... .+.++.+|..+++.
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~-------------~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTS-------------DGSLYALDAKTGKV 98 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEET-------------TSEEEEEETTTSCE
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-eeecccccccccc-------------eeeeEecccCCcce
Confidence 457999998 886543322 2222211 1335566665552 23788888665543
|
... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.9 Score=46.55 Aligned_cols=130 Identities=10% Similarity=0.064 Sum_probs=66.4
Q ss_pred eEEEEEc---CCe---eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE-eccCc-----eEEEe
Q 002164 315 QLVLVSL---DGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW-TTDGI-----FVREL 381 (958)
Q Consensus 315 ~l~~~~~---~g~---~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~-d~~~~-----~~~~l 381 (958)
+|++++. +|. .+.+... .....+++.+|| |+++.. .+|+.+ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 343 2344444 445778899998 555431 156544 44321 22333
Q ss_pred cc-CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC-------cccccccCCeEEEEeCCCCCCCCceEEEe
Q 002164 382 CD-LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD-------AKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (958)
Q Consensus 382 ~~-~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (958)
.. .+.... ........+.|.|||+ |++..-...+.. ........+.+++++. ++++.+.+..
T Consensus 112 ~~~~~~~~~------~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQIN------NHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH 181 (367)
T ss_pred EEccCCCCC------cccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec
Confidence 22 221100 0113356799999995 555321100000 0001122356888884 6666666654
Q ss_pred eccccCceeeecCCceE
Q 002164 454 LDLRYGGISWCDDSLAL 470 (958)
Q Consensus 454 ~~~~~~~~~~spDg~~l 470 (958)
.-.....++|+|+|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 44445679999998653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=3.8 Score=47.48 Aligned_cols=98 Identities=7% Similarity=-0.031 Sum_probs=56.4
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
.++++|+||+.+|++... ..+++.... +..+.+. .+...
T Consensus 337 ~s~avS~dg~~~A~v~~~---------------------------------~~l~vg~~~-----~~~~~~~---~~~~L 375 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------------------------------GVWSVGDGD-----RDAVLLD---TRPGL 375 (557)
T ss_pred ccceEcCCCceEEEEcCC---------------------------------ceEEEecCC-----Ccceeec---cCCcc
Confidence 466778888887777532 246665441 2344442 23358
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
..|+|.++| +|....+ ++ ...+.... .+|+...+. .+-. ....|..+..|+||-+++..
T Consensus 376 t~PS~d~~g-~vWtv~~------g~-~~~l~~~~-~~G~~~~v~-v~~~-~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 376 VAPSLDAQG-YVWSTPA------SD-PRGLVAWG-PDGVGHPVA-VSWT-ATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred ccCcCcCCC-CEEEEeC------CC-ceEEEEec-CCCceEEee-cccc-CCCeeEEEEeCCCccEEEEE
Confidence 899999999 6665432 11 22333332 335554432 1110 11237899999999888876
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=9.1 Score=45.10 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+..++.|+||+.+|++.. ....||+-.+.++.. +.+..... +..+.|.++| +++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5778999999999999742 245788876544332 23332222 5688899888 66644
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.31 Score=45.67 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.....+...+..+.++.. +.+|.+.|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 444556666666666543 3699999999999999988875
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.41 Score=45.68 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEecc
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSG 792 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~ 792 (958)
.....+...++....+ ....+|.++|||+||.+|..++..... ....+++.++
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 3444445555544433 234699999999999999998886533 3344444444
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=92.25 E-value=15 Score=37.65 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.0
Q ss_pred cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCC
Q 002164 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS 237 (958)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 237 (958)
.+++++|+... ....|+.+|+.+|+..--...
T Consensus 33 ~~~~~~v~~~~---------~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 33 VPDGGRVYVAS---------GDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp EEETTEEEEEE---------TTSEEEEEETTTSEEEEEEEC
T ss_pred EEeCCEEEEEc---------CCCEEEEEECCCCCEEEEeec
Confidence 34677777753 377999999988876544333
|
... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.13 E-value=8.9 Score=44.65 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=34.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
+-...-|+|.| .|||.+ ..-|.++|.-+-+..+..+.+... +..+.|+|-.
T Consensus 17 N~~A~Dw~~~G-LiAygs----------hslV~VVDs~s~q~iqsie~h~s~----V~~VrWap~~ 67 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS----------HSLVSVVDSRSLQLIQSIELHQSA----VTSVRWAPAP 67 (1062)
T ss_pred cccccccCccc-eEEEec----------CceEEEEehhhhhhhhccccCccc----eeEEEeccCC
Confidence 45678899877 899965 567888887665544444444432 6788998654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=15 Score=41.40 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=35.1
Q ss_pred eEEEEEc-CCeeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE
Q 002164 315 QLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR 379 (958)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~ 379 (958)
++..++. ++....+... ..+.+.+.||||+.++..+ ++|-+||+++++..
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 125 KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKVLDIETKEVV 177 (541)
T ss_pred eEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEEEEccCceEE
Confidence 4455555 5554444433 5678899999999988776 28999999977653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.3 Score=44.82 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCC--CCCCceeeeccCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFPD 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d--g~~~~~~~lt~~~~ 187 (958)
-+.++.||.+|++||....+ ....+|.+..- ...-++.++.+.++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD---------------------------------~~~~~W~~de~~~~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDD---------------------------------MHGRVWNVDELMVRKTPKPIGVMEHPH 104 (609)
T ss_pred ccceeeeccCCeEEeecCCc---------------------------------ceeeeechHHHHhhcCCCCceeccCcc
Confidence 37789999999999987664 23456655210 00123445555555
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
..++....|.- |.+.+|.. ....+|...|+++.+...+....... +.+..+.-+|-...++.+
T Consensus 105 ~SNIF~L~F~~-~N~~~~SG--------~~~~~VI~HDiEt~qsi~V~~~~~~~--~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 105 RSNIFSLEFDL-ENRFLYSG--------ERWGTVIKHDIETKQSIYVANENNNR--GDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred ccceEEEEEcc-CCeeEecC--------CCcceeEeeecccceeeeeecccCcc--cceeecccCCCCceEEEE
Confidence 55788888874 56666642 33567788888888776666544321 124455566665555554
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.7 Score=48.83 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=82.5
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH---HHHHHCCcEEEE
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV---LLWLARGFAILG 717 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~G~~vl~ 717 (958)
-+.+....+..+..|++.-.. .+.. .|+||++-|||.++.-.+.....+|=+....+.... -.|.+..- ++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aN-iLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEAN-ILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCcccccccc-EEE
Confidence 456665678899988886542 2222 699999999999876554444444432221111000 01222222 222
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH----HhC-----C-Cc
Q 002164 718 GPTTPIIGEGDEEAND---RFVEQLVACAE-AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~-~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (958)
.+..-..|+..+.... .--....+|.. ...+|+.+.+..-.+.+.|.|.||+|..+=.+| ... | =-
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 2222223433322111 11123345544 445677777777778899999999995554444 332 1 13
Q ss_pred eeEEEEeccCCC
Q 002164 784 FCCGIARSGAYN 795 (958)
Q Consensus 784 ~~a~v~~~~~~~ 795 (958)
+++.+...|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 788888888755
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.65 E-value=14 Score=41.88 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=62.5
Q ss_pred ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee
Q 002164 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
.+..+ .....++|.|||+.|+.... .++|++++..++..+.+...+... ...-..+.-+++
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~-------------~G~I~~v~~~~~~~~~~~~l~~v~-----~~~ge~GLlgla 85 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERA-------------TGKILRVNPETGEVKVVFTLPEIV-----NDAQHNGLLGLA 85 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEec-------------CCEEEEEeCCCCceeeeecCCcee-----ccCCCCceeeEE
Confidence 34433 55678899999975554431 247888876655444443332110 000125667899
Q ss_pred eecCC------CCceEEEEeccCCCcccccccCCeEEEEeCCCCCC--CCceEE-Eee----ccccCceeeecCCceEEE
Q 002164 406 WRSDK------PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG--EGPEIL-HKL----DLRYGGISWCDDSLALVY 472 (958)
Q Consensus 406 ~spDG------~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~~~~~l-~~~----~~~~~~~~~spDg~~l~~ 472 (958)
++||= .+|++.....++... ......|.++.++.... ...+.| ... ...-..+.|.|||+ |++
T Consensus 86 l~PdF~~~~~n~~lYvsyt~~~~~~~---~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYV 161 (454)
T TIGR03606 86 LHPDFMQEKGNPYVYISYTYKNGDKE---LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYY 161 (454)
T ss_pred ECCCccccCCCcEEEEEEeccCCCCC---ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEE
Confidence 99874 234443222211100 01245676666421111 112333 211 12245689999996 666
Q ss_pred EE
Q 002164 473 ES 474 (958)
Q Consensus 473 ~~ 474 (958)
+.
T Consensus 162 s~ 163 (454)
T TIGR03606 162 TI 163 (454)
T ss_pred EE
Confidence 54
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.2 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.6
Q ss_pred CCcEEEEEeChHHHHHHHHHHh
Q 002164 758 PSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877763
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=30 Score=40.95 Aligned_cols=132 Identities=12% Similarity=0.040 Sum_probs=71.1
Q ss_pred ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeee
Q 002164 327 EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 327 ~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
.+......+.++|.++| ++.......+ ...-+.+..-.+ +...+.. + +..+ ..+..+..
T Consensus 404 ~~~~~~~Lt~PS~d~~g-~vWtvd~~~~---------~~~vl~v~~~~G-~~~~V~~-~-------~l~g--~~I~~lrv 462 (599)
T PRK13613 404 GVTADGRLTSPSWDGRG-DLWVVDRDPA---------DPRLLWLLQGDG-EPVEVRT-P-------ELDG--HRVVAVRV 462 (599)
T ss_pred eeeccCcccCCcCcCCC-CEEEecCCCC---------CceEEEEEcCCC-cEEEeec-c-------ccCC--CEeEEEEE
Confidence 34444567899999998 6665521110 011144444333 3222222 1 1111 14678999
Q ss_pred ecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE------eeccccCceeeecCCceEEEEEeccccc
Q 002164 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH------KLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 407 spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~------~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
|+||-++++.++. ....+|++--+.....+. ..|+ ..-..+..+.|..++..++...... ..
T Consensus 463 SrDG~RvAvv~~~----------~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~-~~ 530 (599)
T PRK13613 463 ARDGVRVALIVEK----------DGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEG-GV 530 (599)
T ss_pred CCCccEEEEEEec----------CCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEeccCC-CC
Confidence 9999999997553 223344433321112232 3332 2233467889999988666553333 23
Q ss_pred eEEEEEcCCCC
Q 002164 481 TRTWVISPGSK 491 (958)
Q Consensus 481 ~~l~~~~~~~~ 491 (958)
..+|.+.+++.
T Consensus 531 ~~v~~v~vdG~ 541 (599)
T PRK13613 531 QQARYVQVDGS 541 (599)
T ss_pred cceEEEecCCc
Confidence 67999999885
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.43 Score=53.37 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHCCcEE----EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002164 703 TSVLLWLARGFAI----LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 703 ~~~~~la~~G~~v----l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
.+.+.|.+.||.. ++.+| |.+ .... .....+..+...|+.+.+.. .++|.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR-----~~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWR-----LSPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chh-----hchh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566788878754 33222 221 1111 12344455566666665542 469999999999999999888
Q ss_pred hCCC------ceeEEEEeccCCC
Q 002164 779 HAPH------LFCCGIARSGAYN 795 (958)
Q Consensus 779 ~~p~------~~~a~v~~~~~~~ 795 (958)
..+. .++..|.+++++.
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCCC
Confidence 7643 4889999987654
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=6.8 Score=39.66 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=66.7
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+...|+|+++++.+.+. .++++|.++... ...++..+.. .+.-..+||....
T Consensus 161 ~ns~~~snd~~~~~~Vgds-------------~~Vf~y~id~~sey~~~~~~a~t~-----------D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS-------------RRVFRYAIDDESEYIENIYEAPTS-----------DHGFYNSFSENDL 216 (344)
T ss_pred eeeeEEcCCCceEEEecCC-------------CcceEEEeCCccceeeeeEecccC-----------CCceeeeeccCcc
Confidence 5678899999999988743 278888877432 2222222211 2223456776665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEE----EeeccccCceeeecCCce-EEEEEeccccceEEEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----HKLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWV 485 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~ 485 (958)
..++. .+.+.+-+||+ ..-+.+ ... ..+++.++...||+-|-- |+|-++ ..+.+-+
T Consensus 217 ~FAv~-------------~Qdg~~~I~DV--R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv 278 (344)
T KOG4532|consen 217 QFAVV-------------FQDGTCAIYDV--RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHV 278 (344)
T ss_pred eEEEE-------------ecCCcEEEEEe--cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEE
Confidence 55542 33445666665 111111 111 235677888999987643 555543 3366888
Q ss_pred EcCCCC
Q 002164 486 ISPGSK 491 (958)
Q Consensus 486 ~~~~~~ 491 (958)
+|+...
T Consensus 279 ~D~R~~ 284 (344)
T KOG4532|consen 279 VDTRNY 284 (344)
T ss_pred EEcccC
Confidence 888775
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.93 Score=51.17 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=77.4
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCc-----CcH---HHHHHHHCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-----GST---SVLLWLARG 712 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~la~~G 712 (958)
.+.+....+..+..+++...+ ++. ..|+||++-|||.++.-.+.....+|-+.... ... -...|.+..
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 116 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA 116 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC
Confidence 344443346677777776443 222 37999999999987754333333333321100 000 011234433
Q ss_pred cEEEEcCCCCCCCCCCcccchhhH--HHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFV--EQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~--~~~~~D~~~av~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----- 780 (958)
.++.+|..-..|+.......... ....+|+..++.. +.+.+..-...+.|+|.|+||..+-.+|.. .
T Consensus 117 -nllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 -NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred -cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 34443432233443221111110 1223555555543 344454455689999999999866655542 1
Q ss_pred C-CceeEEEEeccCCC
Q 002164 781 P-HLFCCGIARSGAYN 795 (958)
Q Consensus 781 p-~~~~a~v~~~~~~~ 795 (958)
+ =-++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 1 13788888888654
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=6.7 Score=45.20 Aligned_cols=275 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
..+-.+++|++ +...+-||+++-.+|+.+.+.+...... +.....|++..++++.+...+..
T Consensus 40 c~dst~~~l~~---------GsS~G~lyl~~R~~~~~~~~~~~~~~~~---~~~~~vs~~e~lvAagt~~g~V~------ 101 (726)
T KOG3621|consen 40 CVDATEEYLAM---------GSSAGSVYLYNRHTGEMRKLKNEGATGI---TCVRSVSSVEYLVAAGTASGRVS------ 101 (726)
T ss_pred EeecCCceEEE---------ecccceEEEEecCchhhhcccccCccce---EEEEEecchhHhhhhhcCCceEE------
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCC-----ccccccccCCCCcEEE
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-----AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~-----~~~~~~~~SpDGk~l~ 347 (958)
++.++. -+....++.. ..++...||+||++++
T Consensus 102 -----------------------------------------v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y 140 (726)
T KOG3621|consen 102 -----------------------------------------VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY 140 (726)
T ss_pred -----------------------------------------eehhhccCCCcceeeccccccCCceEEEEEecccccEEe
Q ss_pred EEeecCCccccccCCCCCceeEEEeccC-----ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG-----IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~-----~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
+....+ +|.+..++. -..+.|...+.. -+..+-=-..+++
T Consensus 141 sGD~~G-------------kv~~~~L~s~~~~~~~~q~il~~ds~---------------IVQlD~~q~~LLV------- 185 (726)
T KOG3621|consen 141 SGDSQG-------------KVVLTELDSRQAFLSKSQEILSEDSE---------------IVQLDYLQSYLLV------- 185 (726)
T ss_pred ecCCCc-------------eEEEEEechhhhhccccceeeccCcc---------------eEEeecccceehH-------
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeecccc---CceeeecC----CceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDD----SLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---~~~~~spD----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
+.-.+-.+.+. +.++.+++-+.+.+- .+..|-|. .+-.+|.+.-+ .++|.+|..|
T Consensus 186 -------Stl~r~~Lc~t---E~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG---~RlWead~~G----- 247 (726)
T KOG3621|consen 186 -------STLTRCILCQT---EAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG---LRLWEADFAG----- 247 (726)
T ss_pred -------hhhhhhheeec---chhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC---CceEEeecce-----
Q ss_pred EEEeccCCccccCCCCCCceEecc-------------------------CCceEEEEeeeccCCCcEEEEccCCCCCCCC
Q 002164 496 RILFDRSSEDVYSDPGSPMMRRTS-------------------------TGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (958)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~sp-------------------------dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (958)
.++-..-..+....+..|...+-. ++..|+|...+
T Consensus 248 ~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-------------------- 307 (726)
T KOG3621|consen 248 EVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-------------------- 307 (726)
T ss_pred eEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce--------------------
Q ss_pred CCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
||++|...-.+....+.... ..+.+.+|+.|++...+. .++.+.+.+.+.+
T Consensus 308 ---iyv~d~~~~~v~l~se~~~D--------------I~dVs~~~neiFvL~~d~----~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 308 ---IYVFDSNNSQVYLWSEGGHD--------------ILDVSHCGNEIFVLNLDR----GLKVESVASRQRK 358 (726)
T ss_pred ---EEEEEeccceEEEeecCCCc--------------eeEEeecCceEEEEecCC----ceeEEEeehhHHH
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=14 Score=38.88 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-------------eeccCCCCccccccccceEE
Q 002164 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-------------RPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~lt~~~~~~~~~~~~~~~w 251 (958)
+++...++.+.|.-+|.+||. +++++.+.+..-+...- -..-....-.....+..++|
T Consensus 22 vteadiis~vef~~~Ge~Lat---------GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLAT---------GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred echhcceeeEEeecccceEee---------cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhcee
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-----
Q 002164 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----- 325 (958)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~----- 325 (958)
.+++..-.|. +..++ .+-.||.+.. +-+.
T Consensus 93 ~~~~n~a~FL-------------------lstNd--------------------------ktiKlWKi~er~~k~~~~~~ 127 (433)
T KOG1354|consen 93 LDDGNLAEFL-------------------LSTND--------------------------KTIKLWKIRERGSKKEGYNL 127 (433)
T ss_pred cCCCCccEEE-------------------EecCC--------------------------cceeeeeeeccccccccccc
Q ss_pred ----------------------------eecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 326 ----------------------------KEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 326 ----------------------------~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
+++... ..+.++++..|++.++-...- .|-+|.++
T Consensus 128 ~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL--------------RINLWnle 193 (433)
T KOG1354|consen 128 PEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL--------------RINLWNLE 193 (433)
T ss_pred cccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce--------------eeeecccc
Q ss_pred -CceEEEeccCCccccCcccccccccCcceeeeecC-CCCceEEEEeccCCCcccccccCCeEEEEeC------------
Q 002164 375 -GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPSTLYWAETQDGGDAKVEVTPRDIIYTQQA------------ 440 (958)
Q Consensus 375 -~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD-G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~------------ 440 (958)
...--.|.+ ..|..-.....-+.+..|+|. -..++|. +..+.|.+.|.
T Consensus 194 i~d~sFnIVD-----IKP~nmEeLteVITsaEFhp~~cn~f~YS-------------SSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 194 IIDQSFNIVD-----IKPANMEELTEVITSAEFHPHHCNVFVYS-------------SSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ccCCceeEEE-----ccccCHHHHHHHHhhhccCHhHccEEEEe-------------cCCCcEEEeechhhhhhcchhhh
Q ss_pred --CCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE------------eccCCccc
Q 002164 441 --EPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL------------FDRSSEDV 506 (958)
Q Consensus 441 --~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~ 506 (958)
+|.++....-.+.--..+..+.||+.|++|+.- ..-+ ..||.++.+.+..+..++ .....-+-
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dylt--vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLT--VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccce--eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Q ss_pred cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+. .+||-++.++..++ -.....+++++.|..+..+
T Consensus 333 Fe------c~~sg~~~~v~TGs---------------------y~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 333 FE------CSWSGNDSYVMTGS---------------------YNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred eE------EEEcCCcceEeccc---------------------ccceEEEecCCCCcceeec
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=90.57 E-value=33 Score=38.30 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=29.5
Q ss_pred eEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 553 ~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
.|+.+|.++|+. +|..... ......+....+..+++... ...+|.++..+|+...
T Consensus 290 ~l~~~d~~tG~~--~W~~~~~----------~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGSE--LWKNDEL----------KYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCcE--EEccccc----------cCCccccCEEECCEEEEEeC----CCEEEEEECCCCCEEE
Confidence 589999988864 4443210 00000111223555555433 2468999988887653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.52 E-value=40 Score=39.27 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=37.6
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA 231 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~ 231 (958)
.+++|++.... .++..+. ....+....++|....++.. +-.+++|.+||+..+..
T Consensus 223 ~~~vW~~~~p~--~Pe~~~~---~~s~v~~~~f~p~~p~ll~g--------G~y~GqV~lWD~~~~~~ 277 (555)
T KOG1587|consen 223 VLLVWSLKNPN--TPELVLE---SPSEVTCLKFCPFDPNLLAG--------GCYNGQVVLWDLRKGSD 277 (555)
T ss_pred eEEEEecCCCC--CceEEEe---cCCceeEEEeccCCcceEEe--------eccCceEEEEEccCCCC
Confidence 58999996532 3343332 12357888999987777774 44678999999887654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.44 E-value=14 Score=40.39 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=40.0
Q ss_pred cceeeeecCCCCceEEEEeccCCC---cccccccCCeEEEEeCCCCCCC-------------CceEEEeeccccCceeee
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGD---AKVEVTPRDIIYTQQAEPVQGE-------------GPEILHKLDLRYGGISWC 464 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~g~-------------~~~~l~~~~~~~~~~~~s 464 (958)
...+.|.||| .|++. ..+.+. ........+.|++++. +|. .......+-.....++|.
T Consensus 116 g~~l~fgpDG-~LYvs--~G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d 189 (331)
T PF07995_consen 116 GGGLAFGPDG-KLYVS--VGDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFD 189 (331)
T ss_dssp EEEEEE-TTS-EEEEE--EB-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEE
T ss_pred CccccCCCCC-cEEEE--eCCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEE
Confidence 3569999999 55554 222222 1111234567888884 443 233334444445568999
Q ss_pred cCCceEEEEEeccccceEEEEEc
Q 002164 465 DDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
|....|+...+.....-+|.++.
T Consensus 190 ~~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 190 PNTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCCcEEEEccCCCCCcEEEEec
Confidence 98444444433222235566664
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.42 E-value=22 Score=40.20 Aligned_cols=141 Identities=10% Similarity=0.036 Sum_probs=83.5
Q ss_pred cceEEEEEc-CCeee-ecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc
Q 002164 313 TTQLVLVSL-DGTVK-EIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~-~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~ 387 (958)
.+.++++++ .|+.+ .+..+ +.+....|+.+-..|+-... +..+..|+........+...
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a-------------d~~v~~~~~~~~~~~~~~~~--- 142 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA-------------DLKVVYILEKEKVIIRIWKE--- 142 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC-------------ceeEEEEecccceeeeeecc---
Confidence 456889998 77544 44433 55666666666555554442 23677777776554443321
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spD 466 (958)
....+.++..+|||+.++.. ..+|-+++. +.++ ....+.+...++.+.|.-+
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~a---------------s~~ik~~~~---~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTA---------------SRQIKVLDI---ETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEec---------------cceEEEEEc---cCceEEEEecCCCcceEEEEEEEe
Confidence 11345688999999887752 345677775 3333 3444666667777777766
Q ss_pred -----CceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 467 -----SLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 467 -----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
|++++.....+ +...+|+++-.....+...
T Consensus 196 ~~g~~G~~vLssa~~~-r~i~~w~v~~~~kkks~~~ 230 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAE-RGITVWVVEKEDKKKSLSC 230 (541)
T ss_pred ccccccceeeeccccc-cceeEEEEEcccccchhhe
Confidence 66655443322 3467888887554333333
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.35 E-value=3.3 Score=44.24 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=58.9
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
.......||+|+.||.+...+ ...+.+..++. .+.+...... .....+.+-.+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-------------~~~~f~~~~~~~~~kl~~~~~v~-----------~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-------------QRAVFDYRENPKGAKLLDVSCVP-----------KRPTAISFIRED 119 (390)
T ss_pred cccccccCCCceEEEEEeCCC-------------ceEEEEEecCCCcceeeeEeecc-----------cCcceeeeeecc
Confidence 345667788888888776432 44444444322 2222221111 223455565555
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
..+.+. ...+.+|.++.-....+..+.+..+-..+..++||||++.|+++ ++++ +|++...
T Consensus 120 ~sv~v~-------------dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~Iita-DRDE---kIRvs~y 180 (390)
T KOG3914|consen 120 TSVLVA-------------DKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITA-DRDE---KIRVSRY 180 (390)
T ss_pred ceEEEE-------------eecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEe-cCCc---eEEEEec
Confidence 555442 22333444442001214444555555566789999999888876 3333 3555443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=90.27 E-value=16 Score=41.58 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=80.9
Q ss_pred cceEEEEEc-CCeeeecCCC---ccccccccCCC-CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc--CC
Q 002164 313 TTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LP 385 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~--~~ 385 (958)
..+|.++.. .++...|.-- .......||-. ...|..+...-+. .++..-+.-+|++..++.+++.. .+
T Consensus 183 raNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~-----~g~~~~d~ciYE~~r~klqrvsvtsip 257 (545)
T PF11768_consen 183 RANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV-----KGEPSADSCIYECSRNKLQRVSVTSIP 257 (545)
T ss_pred hccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC-----CCCceeEEEEEEeecCceeEEEEEEEe
Confidence 346778887 4455555421 34456677773 3444433322110 11122245567776665655432 22
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp 465 (958)
.. ..+...+++|+.+++++- -.++.|.++|. ....+..+........++|.|
T Consensus 258 L~-----------s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 258 LP-----------SQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHP 309 (545)
T ss_pred cC-----------CcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcC
Confidence 22 345678999999998883 34667888884 334455555555566789999
Q ss_pred CCceEEEEEeccccceEEEEEcC
Q 002164 466 DSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+|..++..+.++. .++|.+.+
T Consensus 310 ~gai~~V~s~qGe--lQ~FD~AL 330 (545)
T PF11768_consen 310 DGAIFVVGSEQGE--LQCFDMAL 330 (545)
T ss_pred CCcEEEEEcCCce--EEEEEeec
Confidence 9998887754433 44444433
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.45 Score=52.17 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
-+.+++++|.+++.-++++|.|.|.|+||+-++.-+-
T Consensus 139 i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 139 ILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 3568999999998888999999999999999886543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=26 Score=36.27 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=26.4
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~ 380 (958)
+.+....|-.-|+.++..+= +....+||++++++..
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSW-------------DRTAnlwDVEtge~v~ 308 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASW-------------DRTANLWDVETGEVVN 308 (481)
T ss_pred cceEehhhhcCcceeeeeec-------------cccceeeeeccCceec
Confidence 55566778888999887762 3467789999776544
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=89.85 E-value=3 Score=41.71 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.7
Q ss_pred CcEEEEEeChHHHHHHHHHHh---CCCceeEEEEecc
Q 002164 759 SKIAVGGHSYGAFMTANLLAH---APHLFCCGIARSG 792 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~~ 792 (958)
.++.++|||+||.++..++.+ .+..+..++....
T Consensus 64 ~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 64 RPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 578999999999999888875 3345666665543
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=89.78 E-value=2.3 Score=41.29 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=48.5
Q ss_pred CcEEEEcCCCCCC-CCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 712 GFAILGGPTTPII-GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 712 G~~vl~~~~~~~~-G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
.-+++..-.++.+ +.........+......++.+.++-|.... ....++.++|||||+.++..++...+..+.-+|.+
T Consensus 62 ~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~ 140 (177)
T PF06259_consen 62 SVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLV 140 (177)
T ss_pred CeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEE
Confidence 4566664333444 222222334444555666666666666654 34568999999999999998887744455555554
Q ss_pred c
Q 002164 791 S 791 (958)
Q Consensus 791 ~ 791 (958)
.
T Consensus 141 G 141 (177)
T PF06259_consen 141 G 141 (177)
T ss_pred C
Confidence 3
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.54 E-value=9.7 Score=41.10 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=74.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
+.-..++...|..|+.+ +.-..|+.++.++|.+..++...++.--...+.+...++| .|+|+...
T Consensus 116 RPLGl~f~~~ggdL~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSS----- 180 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSS----- 180 (376)
T ss_pred CcceEEeccCCCeEEEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEeccc-----
Confidence 45556788888666653 2466899999999998888765443211113456666755 55555110
Q ss_pred CCCCCCCCCCceeeecCCcccccchh-hhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTF-QDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~-~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
..++.|.+ .+.+..+ ..++|+.||. +.+.+.|.++ .....++.|||+.++
T Consensus 181 ------------------sk~~~rd~~~a~l~g~---------~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 181 ------------------SKYDRRDFVFAALEGD---------PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred ------------------cccchhheEEeeecCC---------CccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 01111110 1111111 3567999998 7777777766 666788999999999
Q ss_pred EEEeec
Q 002164 347 LISSIH 352 (958)
Q Consensus 347 ~~~~~~ 352 (958)
+|....
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 998643
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.38 Score=50.54 Aligned_cols=133 Identities=15% Similarity=0.175 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec-cCCCCCC------CCCC--cccccch
Q 002164 740 VACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG--FQNEDRT 809 (958)
Q Consensus 740 ~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~--~~~~~~~ 809 (958)
+..+..|++-..+. ..+.-++..|.|.|--|+.+...|..+|+ +.++|..+ -..+... ..++ +......
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~p 292 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAP 292 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccch
Confidence 34444555544332 23444689999999999999999999965 55555432 1111100 0000 0000000
Q ss_pred h--------hhcH---HHHHhcCccccc-----CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 810 L--------WEAT---STYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 810 ~--------~~~~---~~~~~~sp~~~~-----~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
. .+.+ ....-.+|+.+. .++..|-+|+.+..|...+ ++.+.-+|..|... +-+...|+.
T Consensus 293 yyaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~ 367 (507)
T COG4287 293 YYAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPND 367 (507)
T ss_pred hHhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCC
Confidence 1 1111 112223565554 5677899999999999987 88888888888764 678889999
Q ss_pred CccCC
Q 002164 874 SHGYA 878 (958)
Q Consensus 874 ~H~~~ 878 (958)
.|...
T Consensus 368 ~H~~~ 372 (507)
T COG4287 368 PHNLI 372 (507)
T ss_pred cchhh
Confidence 99874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 958 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 6e-08 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 1e-04 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 5e-04 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 958 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-32 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 3e-31 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-25 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 4e-24 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-20 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 2e-20 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 9e-20 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 2e-19 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 1e-18 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 2e-18 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 3e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 6e-14 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 1e-12 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 4e-12 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 2e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 3e-11 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-10 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 2e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 8e-10 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 1e-09 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 1e-09 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 4e-09 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 8e-08 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 1e-07 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-07 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 2e-07 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 2e-07 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 3e-07 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 2e-06 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 2e-06 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 3e-06 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 6e-06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 7e-06 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 7e-04 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 2e-05 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 2e-05 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 2e-05 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-05 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 8e-05 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-04 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 1e-04 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-04 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 3e-04 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 3e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 6e-04 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 7e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 8e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-32
Identities = 58/315 (18%), Positives = 100/315 (31%), Gaps = 47/315 (14%)
Query: 606 TENTQYYIQSWPDKKSCQITDFPHPYPQLASLQK-ELIKYQRKDGVQLSATLYLPPG--Y 662
+ ++ I A + ++ + DG ++ A +Y P +
Sbjct: 357 RTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDF 416
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GG 718
D P + ++ G R + + +RG + GG
Sbjct: 417 TGPADELPPYVVMAHGG--------PTSRVPAVLDLDV-----AYFTSRGIGVADVNYGG 463
Query: 719 PTTPIIGEGDE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
T G G E VE A A A E G A +++AV G S G +
Sbjct: 464 ST----GYGRAYRERLRGRWGVVDVEDCAAVATALAE----EGTADRARLAVRGGSAGGW 515
Query: 772 MTANLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEATSTYVEMSP 822
A+ L ++ CG + + E Y + +P
Sbjct: 516 TAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAP 574
Query: 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882
A++++ P LL+ G ED Q DRF A+ G G + E HG+ +E+
Sbjct: 575 LTRADRVRVPFLLLQGLEDPV--CPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKET 632
Query: 883 IMHVLWETDRWLQKY 897
++ L +
Sbjct: 633 MVRALEAELSLYAQV 647
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-31
Identities = 90/722 (12%), Positives = 171/722 (23%), Gaps = 188/722 (26%)
Query: 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253
+ DG L S + ++ D G+ L + P
Sbjct: 27 LQGVVDGDKLLVV------GFSEGSVNAYL--YDGGETVKLNREPIN-----SVLDPHYG 73
Query: 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313
+++ E
Sbjct: 74 VGRVIL----------------------------------VRDVSKGAEQ---------- 89
Query: 314 TQLVLVSLDGTVKEIG--PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371
L V+ +E L + ++ + +
Sbjct: 90 HALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYA----------L 139
Query: 372 TTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431
G+ REL LP + + + + +L+ + GG
Sbjct: 140 DGGGL--RELARLP---GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------- 186
Query: 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491
+ + + S R R + P
Sbjct: 187 ----------------LRVFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDG 228
Query: 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551
V + S+D S + + +A + + + P+GN
Sbjct: 229 SVED---LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNH 285
Query: 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQY 611
+ + K + S T +
Sbjct: 286 GRVV--------------LWRGKLV---TSHTSLSTPPRIVS------------------ 310
Query: 612 YIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLP 671
P + P + + L+ + DG ++ + P P
Sbjct: 311 ----LPSGEPLLEGGLPEDLRRSIA-GSRLVWVESFDGSRVPTYVLESGR----APTPGP 361
Query: 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL----GGPTTPIIGEG 727
+ + G S + A GF ++ G T G G
Sbjct: 362 TVVLVHGG--------PFAEDSDSWDTFAA-----SLAAAGFHVVMPNYRGST----GYG 404
Query: 728 DE--EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780
+E +E + A A A E G+A S++ + G+SYG +MT L
Sbjct: 405 EEWRLKIIGDPCGGELEDVSAAARWARE----SGLA--SELYIMGYSYGGYMTLCALTMK 458
Query: 781 PHLFCCGIARSGAYN-----RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835
P LF G+A + + ++ + SP +++K+P+ L
Sbjct: 459 PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLAL 518
Query: 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+H + + T R L G I+P H E + +L +L
Sbjct: 519 IHPQNASR--TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLA 576
Query: 896 KY 897
Sbjct: 577 TQ 578
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 41/299 (13%), Positives = 82/299 (27%), Gaps = 44/299 (14%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
+LS TL P G P + + + G + R
Sbjct: 14 GQDELSGTLLTPTGM--------PGVLFVHGW--------GGSQHHSLVRAR-------E 50
Query: 708 WLARGFAIL-----GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIA 762
+ G + G Q + +AA +++ IA
Sbjct: 51 AVGLGCICMTFDLRGH------EGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIA 104
Query: 763 VGGHSYGAFMTANLLAHAPHLFCCGIA----RSGAYNRTLTPFGFQNEDRTLWEATSTYV 818
V G SYG +++A L P + + + +++ +
Sbjct: 105 VVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPG 164
Query: 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ + + K +LLV E D + +A + ++ H +
Sbjct: 165 DNLALAACAQYKGDVLLVEAENDVI--VPHPVMRNYADAFT-NARSLTSRVIAGADHALS 221
Query: 879 ARESIMHVLWETDRWLQKYCVSNTADRSTDLKVSKDDESKGAPHLQNKTVAASGGGGTE 937
+E WL + V + ++ ++ + Q V+ G G E
Sbjct: 222 VKEHQQEYTRALIDWLTEMVVGRRIALAKEVVAAR---KQLLKEQQGDAVSLPGQGSRE 277
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 42/287 (14%), Positives = 79/287 (27%), Gaps = 57/287 (19%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ Y+ +++ +P +GP P + Y G G +E
Sbjct: 57 YRLTYKSFGNARITGWYAVPDK-----EGPHPAIVK-YHG------YNASYDGEIHEM-- 102
Query: 700 IGSTSVLLWLARGFAIL----------GGPTTPIIGE-------GDEEANDRFVEQLVAC 742
+ W G+A + G G + + + +
Sbjct: 103 ------VNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTL 798
A A+E + ++I V G S G +T A + N +
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDV 216
Query: 799 TPFGFQNEDR----------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLT 848
E T +A T A+++K P+L+ G D T
Sbjct: 217 ALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--TPP 274
Query: 849 MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895
+N L+ L + + H Y + + + L+
Sbjct: 275 STVFAAYNHLETKK---ELKVYRYFGHEYIPAFQTEKLAF-FKQILK 317
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 1e-20
Identities = 116/759 (15%), Positives = 220/759 (28%), Gaps = 140/759 (18%)
Query: 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAI 245
G +N + S DG+ + + S + D++ + + P+
Sbjct: 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118
Query: 246 F----DNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL----GPKMQSNEKRDIIQVRTFQD 297
+ +V N+ + V P P + + N D +
Sbjct: 119 WSPVGHKLAYVWNNDIYVK-------IEPNLPSYRITWTGKEDIIYNGITDWV------- 164
Query: 298 LLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPS--PDEKYILISSIHRPY 355
Y+E++F Y+ S +G + Y + + P +Y S Y
Sbjct: 165 -----YEEEVFSAYSALWW---SPNG--TFL----AYAQFNDTEVPLIEYSFYSDESLQY 210
Query: 356 SFIVPCGRFPR--------QVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407
V +P+ + V TD + + P + + + W
Sbjct: 211 PKTVRV-PYPKAGAVNPTVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWA 268
Query: 408 SDKPSTLYWA-ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466
+ + +L W Q+ ++ + G ++ + + W
Sbjct: 269 TQERISLQWLRRIQN----------YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318
Query: 467 SLALVYESWYKTRRTRTWVISP-GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525
+ + G + + + T GT+ +
Sbjct: 319 FRPSEPHFTLDGNSFYKIISNEEGYRHIC-----------YFQIDKKDCTFITK-GTWEV 366
Query: 526 AKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT---VAL 582
I+ + Y + N P G +L+ I ++ E E
Sbjct: 367 IGIEALTSDYLYYISNEYKGMPGGR----NLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422
Query: 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQ--KE 640
S + Y S DK + D L ++Q +
Sbjct: 423 FSKE--AKYYQL------RCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSK 474
Query: 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI 700
+ + + + + LPP +D SK P L Y G + + F R+
Sbjct: 475 KLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGP-----CSQKAD---TVF-RL 523
Query: 701 GSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEEANDRFVEQLVACAEAAVE 748
+ L + G + G+ G E D Q+ A
Sbjct: 524 NWATYLA-STENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVED----QI-----EAAR 573
Query: 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGF 803
+ + G +IA+ G SYG ++T+ +L +F CGIA + Y+ T
Sbjct: 574 QFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYT---- 629
Query: 804 QNE----DRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNAL 858
E T + Y + A K LL+HG D+N QS + AL
Sbjct: 630 --ERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDN--VHFQQSAQISKAL 685
Query: 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
G + + E HG A+ + H+ ++++
Sbjct: 686 VDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQC 724
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 38/281 (13%), Positives = 75/281 (26%), Gaps = 41/281 (14%)
Query: 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPGEFKSKDAAGQV--- 690
+ + G ++ L +P ++ LPC+ +P ++ + G +
Sbjct: 71 VTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPHDWLFWPSMGYICFV 126
Query: 691 ---RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
RG + + + + G P G D + ++ A AV
Sbjct: 127 MDTRGQGSGWLKGDTPD----YPEGPVDPQYPGFMTRGILDPR--TYYYRRVFTDAVRAV 180
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-------- 799
E +I + G S G + + A + +
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP 240
Query: 800 ----PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855
+ T A + K P L G DN T+ F
Sbjct: 241 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV-----F 295
Query: 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
A + + I P+ +H + + + +K
Sbjct: 296 AAYNYYAGPKEIRIYPYNNHEGGGSFQAVEQVKFLKKLFEK 336
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 9e-20
Identities = 35/285 (12%), Positives = 74/285 (25%), Gaps = 62/285 (21%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
+ ++ + + + G ++ A P +G P L + G
Sbjct: 72 ESSFQ-VSFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIR-FHG-------Y 117
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLV 740
G N+ L ++A GF ++ GG + + G N + L
Sbjct: 118 SSNSGDWNDK--------LNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLD 169
Query: 741 ACAE------------AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788
A+ V+ ++ V G S G ++ A P +
Sbjct: 170 DDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVS 229
Query: 789 ARSGAYNRTLT------------PFGFQNEDRTLWEATSTYVEMSPFMS----ANKLKKP 832
+ + E + ++ A ++K
Sbjct: 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD 289
Query: 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+L+ G D +N + + + + P H
Sbjct: 290 VLMCVGLMDQV--CPPSTVFAAYNNI---QSKKDIKVYPDYGHEP 329
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-19
Identities = 71/310 (22%), Positives = 114/310 (36%), Gaps = 75/310 (24%)
Query: 624 ITDFPHPYPQLASLQK--ELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
+ D HPY + Q+ E DG L+ ++ P G+DP+K P + Y G
Sbjct: 470 LADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVYGGP 527
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPIIGE----------G 727
A+ V + +P G +LA +G+ + L TP G G
Sbjct: 528 -----ASQTV---TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQG 579
Query: 728 DEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787
E D QL V + ++ P++I V G S G +MT LLA A + CG
Sbjct: 580 TVEVAD----QL-----RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACG 630
Query: 788 IARSGA---------------YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832
+A GA Y +N+ Y E L+ P
Sbjct: 631 VA--GAPVTDWGLYDSHYTERYMDLPA----RNDAG--------YREARVLTHIEGLRSP 676
Query: 833 ILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889
+LL+HG D+N + + +AL+ G L+ P HG + +++ +
Sbjct: 677 LLLIHGMADDNVLFTNST-----SLMSALQKRGQPFELMTYPGAKHGLSGADALH--RYR 729
Query: 890 T-DRWLQKYC 898
+ +L +
Sbjct: 730 VAEAFLGRCL 739
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 1e-18
Identities = 73/418 (17%), Positives = 129/418 (30%), Gaps = 70/418 (16%)
Query: 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF--DINTGSK 564
Y + ++G + I + + + N P +++ I +
Sbjct: 341 YIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRR----NIYRISIGSYPP 396
Query: 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624
+ + + S Y D++ +
Sbjct: 397 SKKCVTCHLRKERCQYYTASFSDYAKYYAL------VCYGPGIPISTLHDGRTDQEIKIL 450
Query: 625 TDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
+ L ++Q + + D + L + LPP +D SK P L Y G
Sbjct: 451 EENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSK--KYPLLIQVYGGP-- 506
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI--LGGPTTPIIGE----------GDEE 730
+ V + F + S L G I + G T G+ G E
Sbjct: 507 ---CSQSV---RSVF-AVNWISYLA-SKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYE 558
Query: 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790
D Q+ AV + + G +IA+ G SYG ++++ LA LF CGIA
Sbjct: 559 VED----QI-----TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAV 609
Query: 791 SG---------AYN-RTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHG 838
+ Y R + P N + Y + A + LL+HG
Sbjct: 610 APVSSWEYYASVYTERFMGLPTKDDNLEH--------YKNSTVMARAEYFRNVDYLLIHG 661
Query: 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D+N S + AL + + ++HG + S H+ +L++
Sbjct: 662 TADDN--VHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQ 716
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-18
Identities = 57/316 (18%), Positives = 99/316 (31%), Gaps = 63/316 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKD 667
+ + + K S + + +P A + DG L L +P +DP+K
Sbjct: 426 RKVTVTN-IGKGSHTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK- 483
Query: 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPII 724
P + + Y G + + R +++A +G+A+ + +
Sbjct: 484 -KYPVIVYVYGG--------PHAQLVTKTW-RSSVGGWDIYMAQKGYAVFTVDSRGSANR 533
Query: 725 GE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
G G E D Q+ V+ + + +I V G SYG FMT
Sbjct: 534 GAAFEQVIHRRLGQTEMAD----QM-----CGVDFLKSQSWVDADRIGVHGWSYGGFMTT 584
Query: 775 NLLAHAPHLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
NL+ +F G+A Y R E Y +
Sbjct: 585 NLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF---------DAPQENPEGYDAANLLK 635
Query: 825 SANKLKKPILLVHGEEDNN---SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881
A LK ++L+HG D +L F +A + P H +
Sbjct: 636 RAGDLKGRLMLIHGAIDPVVVWQHSL-----LFLDACVKARTYPDYYVYPSHEHNVMGPD 690
Query: 882 SIMHVLWETDRWLQKY 897
+ H+ R+ +
Sbjct: 691 RV-HLYETITRYFTDH 705
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-17
Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 63/319 (19%)
Query: 609 TQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQ--RKDGVQLSATLYLPPGYDPSK 666
+ KK + H + Q ++Y+ D L + P + +
Sbjct: 435 MVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT 494
Query: 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI--LGGPTTPI 723
P L + V + ++ G + G +
Sbjct: 495 --HYPLLLVVDGT-----PGSQSVAEKFEVSWE------TVMVSSHGAVVVKCDGRGSGF 541
Query: 724 IGE----------GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
G G E D Q+ AV +++ +++AV G YG +++
Sbjct: 542 QGTKLLHEVRRRLGLLEEKD----QM-----EAVRTMLKEQYIDRTRVAVFGKDYGGYLS 592
Query: 774 ANLLAHAP----HLFCCGIARSG---------AYN-RTLTPFGFQNEDRTLWEATSTYVE 819
+L F CG A S A++ R L Y
Sbjct: 593 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYL---------GLHGLDNRAYEM 643
Query: 820 MSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
+ L++ L++H D + L A L I P ESH +
Sbjct: 644 TKVAHRVSALEEQQFLIIHPTADEK--IHFQHTAELITQLIRGKANYSLQIYPDESHYFT 701
Query: 879 ARESIMHVLWETDRWLQKY 897
+ H+ + +
Sbjct: 702 SSSLKQHLYRSIINFFVEC 720
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 6e-14
Identities = 65/409 (15%), Positives = 121/409 (29%), Gaps = 96/409 (23%)
Query: 505 DVYSDPGSPMMRRTSTGTYVIA----KIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560
V G RT T Y N+ G Y++L L D++
Sbjct: 44 SVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLE------------LSTEDLH 91
Query: 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620
+ + ++ + + D ++QL + + + + D+K
Sbjct: 92 SNT------------IVFGPNFLNTRMKLDYIVSQLVPIFDVDGNE--VEPFTSKQTDEK 137
Query: 621 SCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGE 680
I DF + GV++ L++P +P + PL + + + G
Sbjct: 138 HLIIDDF-----------LAFTFKDPETGVEIPYRLFVPKDVNPDRKYPL--VVFLH-G- 182
Query: 681 FKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG-----PTTPIIG----EGDEEA 731
AG+ RG+ N G+ ++W + ++ P P +
Sbjct: 183 ------AGE-RGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRE 235
Query: 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791
N E+ + + +++ ++I + G S G + T + P LF I
Sbjct: 236 NPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPIC 295
Query: 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQ 850
G + ++K PI + H E+D
Sbjct: 296 GGGD---------------------------VSKVERIKDIPIWVFHAEDDPVV--PVEN 326
Query: 851 SDRFFNALKGHGALCRLVILP---FESHGYAARESIMHVLWETD--RWL 894
S L G R E HG+ S + + WL
Sbjct: 327 SRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWL 375
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 1e-12
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 18/199 (9%)
Query: 707 LWLARGFAIL-------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ RGF +L G P + + E A
Sbjct: 46 GYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGL 105
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819
+ + G S GAF+ LLA + L + L +
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVL-----ALYQ 160
Query: 820 MSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
P P+L +HG D+ + ++ AL+ H RL E G+
Sbjct: 161 APPATRGEAYGGVPLLHLHGSRDHI--VPLARMEKTLEALRPHYPEGRLARFVEEGAGHT 218
Query: 879 ARESIMHVLWETDRWLQKY 897
+ +L+ +
Sbjct: 219 LTPL---MARVGLAFLEHW 234
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 48/283 (16%), Positives = 84/283 (29%), Gaps = 68/283 (24%)
Query: 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWS--YPGEFKSKDAAGQVRGSPNEFPRIG 701
Y DG++L+A L +P P + G + +
Sbjct: 5 YIDCDGIKLNAYLDMPKN----NPEKCPLCIIIHGFTG---HSEERH--------IVAVQ 49
Query: 702 STSVLLWLA-RGFAIL-------GGPTTPIIGEGD-EEANDRFVEQLVACAEAAVEEVVR 752
L G A L G +G E+ + + + A V+ +
Sbjct: 50 E-----TLNEIGVATLRADMYGHGK------SDGKFEDHT---LFKWLTNILAVVDYAKK 95
Query: 753 RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-----RTLTPFGFQNED 807
+ I + GHS G A + I S A RT G + +
Sbjct: 96 LD--FVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153
Query: 808 RTLWEATSTYV-------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854
+ + + + +K KP+L+VHG++D S F
Sbjct: 154 ENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEA--VPYEASVAF 211
Query: 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
K C+LV +P ++H Y + V ++ +
Sbjct: 212 SKQYKN----CKLVTIPGDTHCYDHHLEL--VTEAVKEFMLEQ 248
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 54/252 (21%)
Query: 664 PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723
P + LP K++D V G ++ L+ G++ +
Sbjct: 141 PFEGELLPGYAIISED--KAQDTLIVVGG-------GDTSREDLFYMLGYSGWEHDYNVL 191
Query: 724 I----GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779
+ G+G N A AA+ ++ A KIA+ G S G + TA +
Sbjct: 192 MVDLPGQGK---NPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEK 248
Query: 780 APHLFCCGIARSGAYN-----------------------------------RTLTPFGFQ 804
+ IA + Y+ L + +Q
Sbjct: 249 DKRIKAW-IASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQ 307
Query: 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864
+ + +E + + NK+ P L + G +++ L QS ++ K G
Sbjct: 308 FGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDS--ELMRQSQVLYDNFKQRGID 365
Query: 865 CRLVILPFESHG 876
L ES
Sbjct: 366 VTLRKFSSESGA 377
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 46/262 (17%), Positives = 74/262 (28%), Gaps = 45/262 (17%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
DG+ + + +P G GP P + E + E ++ + L
Sbjct: 135 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMEN----L 174
Query: 708 WLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
L RG A GP G+G+ R A V+ + + I V G
Sbjct: 175 VLDRGMATATFDGP-----GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLG 229
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAYN----RTLTPFGFQNEDRTLWEATSTYV--- 818
S G A P L C I+ G + TP ++ T
Sbjct: 230 RSLGGNYALKSAACEPRLAAC-ISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLH 288
Query: 819 ---EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ +++ P ++HG D + D + LV+ H
Sbjct: 289 VHAALETRDVLSQIACPTYILHGVHDEVPLS---FVDTVLELVPAEHL--NLVVEKDGDH 343
Query: 876 GYAARESIMHVLWETDRWLQKY 897
+ E WL
Sbjct: 344 CCHNLGIRPRL--EMADWLYDV 363
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 37/244 (15%), Positives = 69/244 (28%), Gaps = 33/244 (13%)
Query: 656 LYLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713
+LPPG + G + P + G + L GF
Sbjct: 129 HFLPPGVWRQSVRAGRVRA-TLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGF 184
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773
A L E + + E AV +++ I + G S GA +
Sbjct: 185 ATLA--LAYYNFEDLP---NNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
Query: 774 ANLLAHAPHLFCCGIARSGA--------------------YNRTLTPFGFQNEDRTLWEA 813
++ + ++ R F + + A
Sbjct: 240 LSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNA 299
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPF 872
+ + K + PILL+ G++D+N + + L+ HG +++ P
Sbjct: 300 LVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELY-AQTVSERLQAHGKEKPQIICYPG 358
Query: 873 ESHG 876
H
Sbjct: 359 TGHY 362
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 36/298 (12%), Positives = 71/298 (23%), Gaps = 45/298 (15%)
Query: 632 PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVR 691
+ E ++ + + P G +P + + G+
Sbjct: 80 EKKEGYILEKWEFYPFPKSVSTFLVLKPEH----LKGAVPGVLCIPGSGRTKEGLVGEPG 135
Query: 692 GSPNEFPRIGSTSV---LLWLARGFAIL-----------GGPTTPIIGEGDEEANDRFVE 737
+ V L + G+ + D + RF+
Sbjct: 136 ICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLL 195
Query: 738 QL--------VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-------APH 782
+L + + + +I + G S G L +
Sbjct: 196 ELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYN 255
Query: 783 LFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE 839
F C F N R L Y P + A+ +PI+ G
Sbjct: 256 DFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNF-PDVVASLAPRPIIFTEGG 314
Query: 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL--WETDRWLQ 895
D + A G P + A R+ + H+ ++ + +
Sbjct: 315 LD----RDFRLVQSAYAAS-GKPENAEFHHYP-KFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 83/601 (13%), Positives = 154/601 (25%), Gaps = 190/601 (31%)
Query: 78 SSSNAVATEDEDNLEGRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEEL 137
V E+ L Y+ I+ P + + QRD+ L+ + +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKY-NV 131
Query: 138 ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG-----------QEIEIQ-GF 185
+R + L LR + + I G LG ++Q
Sbjct: 132 SRLQPYLK-LR-----QALLELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 186 PDGAKLNFVTW---SQDGKH-------LAFSIRID----AEDSSSSKLRVWVADVDTGKA 231
+ W +ID + SS +++ + +
Sbjct: 181 DFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 232 RPLFQSPDIYLNA--IFDNFVWVNNSTL----LVCTIPLL-------------------R 266
R L +S Y N + N V N L C I LL
Sbjct: 236 R-LLKSKP-YENCLLVLLN-VQ-NAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS 290
Query: 267 GDPPKKPLVP----------LGPKMQS--NEKRDI--IQVRTFQDLLKDEYDEDLFDYY- 311
D L P L + Q E ++ + ++D +D +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWK 348
Query: 312 -----ATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPY-SFIVPCGRFP 365
T ++ SL+ L+P+ K + V FP
Sbjct: 349 HVNCDKLTTIIESSLN-------------VLEPAEYRKM---------FDRLSV----FP 382
Query: 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425
+ D+ ++ + + + + + + K ST+
Sbjct: 383 P--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VE-KQPKESTIS---------- 427
Query: 426 KVEVTPRDIIYT-QQAEPVQGEGPEILHK--LDLRYGGI-SWCDDSLALVYES--WY--- 476
I + V+ E LH+ +D Y ++ D L Y +Y
Sbjct: 428 ---------IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 477 -----KTRRTRTWVISPGSKDVAPRILFD--------RSSEDVYSDPGSPMMRRTSTGTY 523
+ + D R ++ GS + Y
Sbjct: 478 GHHLKNIEHPERM-------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 524 --VIAKIKKENDEGTYILLNGNGATPEGNI---PFLDLFDINTGSKERIWESDKEKYYET 578
I + + +L+ E N+ + DL I ++ E +E
Sbjct: 531 KPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRI-------ALMAEDEAIFEE 582
Query: 579 T 579
Sbjct: 583 A 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 8e-04
Identities = 59/548 (10%), Positives = 129/548 (23%), Gaps = 174/548 (31%)
Query: 424 DAK-VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-------------DDSLA 469
D K V+ P+ I+ ++ + + + + W ++ L
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLR--LFWTLLSKQEEMVQKFVEEVLR 88
Query: 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529
+ Y+ + + +T P ++ + +Y+D + + K++
Sbjct: 89 INYK-FLMSP-IKTEQRQPS----MMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLR 141
Query: 530 K---ENDEGTYILLNGNGATPEG----------NIPFLDLFD-----INTGSKERIWESD 571
+ E +L++G + G + D +N
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK--------- 190
Query: 572 KEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY 631
+ ++ L TS+ + N + I S + + PY
Sbjct: 191 ---NCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPY 243
Query: 632 PQLASL-------QKELIKY----------QRKDGV--QLSATLYLPPGYDPSKDGPLPC 672
L + R V LSA D
Sbjct: 244 EN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---- 297
Query: 673 LFWSYPGEFKSKDAAGQVRG-SPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731
+ K + P + PR T+ L+ II E +
Sbjct: 298 -L----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS------------IIAESIRDG 340
Query: 732 NDRFVEQLVACAEAAVEEVVRRGVAH--PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789
+ + + ++ + P++ + +
Sbjct: 341 LATW-DNWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRL---------------SV- 380
Query: 790 RSGAYNRTLTPFGFQNED-----RTL---WEATSTYVEMSPFMSANKLKKPILLVHGEED 841
F L W M + NKL K L+ E+
Sbjct: 381 -------------FP-PSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLV---EKQ 420
Query: 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH-VLWETDRWLQKYCVS 900
T+++ + E E +H + + + +
Sbjct: 421 PKESTISI-----------PS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 901 NTADRSTD 908
+ D
Sbjct: 463 DLIPPYLD 470
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 49/258 (18%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF-- 713
++ P + + G + + I + RG+
Sbjct: 72 VFYSEK----TTNQAPLFVFVHGGYW--------QEMDMSMSCSIVGP----LVRRGYRV 115
Query: 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVA-HPSKIAVGGHSYGAFM 772
A++ P + +EQL+ + + S + GH GA +
Sbjct: 116 AVMDYNLCP-------QVT---LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHL 165
Query: 773 TANLLAHA-------PHLFCCGIARSGAYN-RTLTPFGFQNEDRTLWEATSTYVEMSPFM 824
A +L + I G Y+ R L+ N L +SP +
Sbjct: 166 LAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPML 225
Query: 825 SANKLKK-----PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879
I +V E D S T QS + + L+ G + H
Sbjct: 226 WEYTDVTVWNSTKIYVVAAEHD--STTFIEQSRHYADVLRKKGYKASFTLFKGYDHF--- 280
Query: 880 RESIMHVLWETDRWLQKY 897
I+ D + ++
Sbjct: 281 --DIIEETAIDDSDVSRF 296
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 35/290 (12%), Positives = 72/290 (24%), Gaps = 47/290 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPC--LFWSYPGEFKSKDAAGQVRGSPNEF 697
E ++ + + +P + P+P G + + N+
Sbjct: 93 EKWEFYPLPKCVSTFLVLIPDN----INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDR 148
Query: 698 PRIGSTSVLLWLA-RGFAIL-----------GGPTTPIIGEGDEEANDRFVEQL------ 739
+ + L G+ + + D + R++ +L
Sbjct: 149 YKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLG 208
Query: 740 --VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC----CGIARSGA 793
+ + + +I V G S G L ++ + ++
Sbjct: 209 YASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQTQE 268
Query: 794 YNRTLTP------FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
+T F N R L P + A +PI+L G D
Sbjct: 269 RAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNF-PDIVAALAPRPIILTEGGLD------ 321
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
D A G + I ++ + L L +
Sbjct: 322 -RDLDLVRKAYAIVGTPDNVKIYHYKKFSDPDTRKNVEYL---PEGLDRN 367
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 44/226 (19%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
L+LP G P+ + + G + + + + L++G+A+
Sbjct: 55 LFLPEG------TPVGLFVFVHGG--------YWMAFDKSSWSHLAVG----ALSKGWAV 96
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
+ + ++ AV + I + GHS G + A
Sbjct: 97 AMPSYEL--------CPEVRISEITQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVAR 145
Query: 776 LLAHAPHLFCCG------IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829
+L G + S + L P + + + SP N+
Sbjct: 146 MLDPEVLPEAVGARIRNVVPISPLSD--LRPLLRTSMNEKFKMDADAAIAESPVEMQNRY 203
Query: 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
+ + G + Q+ A VI + H
Sbjct: 204 DAKVTVWVGGAE--RPAFLDQAIWLVEAWD-----ADHVIAFEKHH 242
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 33/243 (13%)
Query: 657 YLPPG--YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714
+LPPG +P + G P E + G+ + L +GFA
Sbjct: 146 FLPPGVRREPVRVG-RVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFA 201
Query: 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774
++ + + +E E A+ ++ + + G S G +
Sbjct: 202 VMA-LAYYNYEDLPKTMETLHLEYF----EEAMNYLLSHPEVKGPGVGLLGISKGGELCL 256
Query: 775 NLLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNED-----------RTLWEAT 814
++ + + + N TL P G + +
Sbjct: 257 SMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSP 316
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFE 873
+ F+ + + L + G++D+N + + L+ HG +++ P
Sbjct: 317 LEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYA-NEACKRLQAHGRRKPQIICYPET 375
Query: 874 SHG 876
H
Sbjct: 376 GHY 378
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 26/241 (10%), Positives = 51/241 (21%), Gaps = 39/241 (16%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYD----PSKDGPLPCLFWSYPGEFK 682
Q + A P + G + + K
Sbjct: 139 HLKSDNLAIQAQVLANSAYLE------AAKKSKYIIKQLEIPFEKGKITAHLHLTNTD-K 191
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL--GGPTTPIIGEGDEEANDRFVEQLV 740
G + + A+L P G + E
Sbjct: 192 PHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMP-----SVG-YSSKYPLTEDYS 245
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799
+A + E+ ++ + G +G L + +
Sbjct: 246 RLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFAS 305
Query: 800 -------PFGFQNEDRTLWEATSTYVEM------------SPFMSANKLKKPILLVHGEE 840
P + + + + + F+S+ K K PIL + E
Sbjct: 306 PQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 841 D 841
D
Sbjct: 366 D 366
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 35/163 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-----------------APHLFC 785
A + + +V+ + I + GHS GA +LA +
Sbjct: 100 AVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVK 157
Query: 786 CGIARSGAYNRTLTPFGFQN----------EDRTLWEATSTYVEMSPFMSANKLKKPILL 835
G Y+ + + ++E + V + ++ + L
Sbjct: 158 RVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHL 217
Query: 836 VHGEEDNNSGTL--TMQSDRFFNALKGHGALCRLVILPFESHG 876
VH D L Q++ + L+ + +L + H
Sbjct: 218 VHSYSD----ELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 35/272 (12%), Positives = 69/272 (25%), Gaps = 46/272 (16%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
+ D + Y +++ P + PG G S E
Sbjct: 15 NKSTFSLNDTAWV--DFYQLQNPRQNENYTFPAIII-CPG-------GGYQHISQRES-- 62
Query: 700 IGSTSVLLWLA-RGFAI------LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR 752
+ L +G+ + + + + L ++
Sbjct: 63 ---DPLALAFLAQGYQVLLLNYTVMN---------KGTNYNFLSQNLEEVQAVF--SLIH 108
Query: 753 RGVA----HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDR 808
+ +P ++ + G S G + A G+ Y T FG+ ++
Sbjct: 109 QNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVI--LCYPVTSFTFGWPSDLS 166
Query: 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868
E + P + H +D G S ++ + L H
Sbjct: 167 HFNFEIENISEYNISEKVTSSTPPTFIWHTADDE--GVPIYNSLKYCDRLSKHQVPFEAH 224
Query: 869 ILPFESHGYAAR-----ESIMHVLWETDRWLQ 895
HG + S + L RW+
Sbjct: 225 FFESGPHGVSLANRTTAPSDAYCLPSVHRWVS 256
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 63/268 (23%)
Query: 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712
A +YLPPGY K L+ G GS N++ G +
Sbjct: 47 PARVYLPPGYSKDK--KYSVLYLL----------HGI-GGSENDWFEGGG---RANVIAD 90
Query: 713 FAILGGPTTPII---------GEGDEEANDRFVEQLVACAEAAVEEVVR------RGVAH 757
I G P+I G G + + F + L+ ++
Sbjct: 91 NLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLL-------NSLIPYIESNYSVYTD 143
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817
A+ G S G + N+ F S A N F + +
Sbjct: 144 REHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGK--------- 194
Query: 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877
+A + K + + G D+ L R + ++ H +
Sbjct: 195 -------AAREKLKLLFIACGTNDS----LIGFGQRVHEYCVANNINHVYWLIQGGGHDF 243
Query: 878 AA-RESIMHVLWETDRWLQKYCVSNTAD 904
+ + + L + + ++ +
Sbjct: 244 NVWKPGLWNFL----QMADEAGLTRDGN 267
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 35/269 (13%), Positives = 61/269 (22%), Gaps = 53/269 (19%)
Query: 647 KDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV 705
T Y D P + PG G S E +
Sbjct: 11 TAAHPFQITAYWLDQISDFETAVDYPIMII-CPG-------GGFTYHSGREE-----API 57
Query: 706 LLWLA-RGFA-------ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAH 757
+ G ++ G + + L A ++ + + AH
Sbjct: 58 ATRMMAAGMHTVVLNYQLIVGDQS------------VYPWALQQLG-ATIDWITTQASAH 104
Query: 758 ---PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNR-----------TLTPFG 802
+I + G S G + A A + LT G
Sbjct: 105 HVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTA-G 163
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
F + T+ + KP + D + S ++ A+ H
Sbjct: 164 FPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATD--ESVPPINSLKYVQAMLQHQ 221
Query: 863 ALCRLVILPFESHGYAARESIMHVLWETD 891
+ HG A + +
Sbjct: 222 VATAYHLFGSGIHGLALANHVTQKPGKDK 250
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 39/268 (14%)
Query: 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAG 688
H + + Q + Q+ T YL + LP + PG
Sbjct: 9 HHHHENLYFQGMQVIKQKLTATCAQLTGYLHQPDTNAHQTNLPAIII-VPG-------GS 60
Query: 689 QVRGSPNEFPRIGSTSVLLWLA-RGFA--ILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
+ + + A G+ L + + ++
Sbjct: 61 YTHIPVAQAESLA-----MAFAGHGYQAFYLEYTLLT-------DQQPLGLAPVLDLG-R 107
Query: 746 AVEEVVRRGVAH---PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR------ 796
AV + + P +I G S G + A + + + A +
Sbjct: 108 AVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVL 167
Query: 797 ----TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852
GF +D TL T T E++ N +P + +D +
Sbjct: 168 GYPVISPLLGFPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADD--PIVPATNTL 225
Query: 853 RFFNALKGHGALCRLVILPFESHGYAAR 880
+ AL L + HG A
Sbjct: 226 AYATALATAKIPYELHVFKHGPHGLALA 253
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Length = 403 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 32/249 (12%), Positives = 55/249 (22%), Gaps = 48/249 (19%)
Query: 655 TLYLPPGYDPSK-------DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
++ + DG S Q+
Sbjct: 185 WIFTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPP--------------- 229
Query: 708 WLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGG 765
A+ E N F + V+ + + V G
Sbjct: 230 ------AVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPF-SDRADRTVVAG 282
Query: 766 HSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMS 825
S+G H P F C +++SG+Y G Q E +E
Sbjct: 283 QSFGGLSALYAGLHWPERFGCVLSQSGSYWW--PHRGGQQEG--------VLLEKLKAGE 332
Query: 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885
+ I+L G + + + + L + R +M
Sbjct: 333 VSAEGLRIVLEAGIREPM---IMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQ 389
Query: 886 VLWETDRWL 894
L L
Sbjct: 390 GL----IDL 394
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* Length = 297 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 45/289 (15%), Positives = 75/289 (25%), Gaps = 52/289 (17%)
Query: 623 QITDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFW--SYPG 679
Q P Y ++K S +YLP GYDP+K +
Sbjct: 23 QYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNK--KYNIFYLMHGGGE 80
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII-----GEGDEEANDR 734
+ F +L AI+ G P+I G
Sbjct: 81 NENTI------------FSNDVKLQNIL----DHAIMNGELEPLIVVTPTFNGGNCTAQN 124
Query: 735 F----VEQLVACAEA-----AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785
F + ++ E+ A + A GG + G T ++ +
Sbjct: 125 FYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA 184
Query: 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845
+ SG Y +P N + +K + + G ED
Sbjct: 185 YFMPLSGDYWYGNSPQDKANSIAEAINRS----------GLSKREYFVFAATGSEDIAYA 234
Query: 846 TLTMQSD------RFFNALKGHGALCRLVILPFESHGYAA-RESIMHVL 887
+ Q + F ++ P +H + R I L
Sbjct: 235 NMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDAL 283
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 Length = 223 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 29/150 (19%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781
I E + A A E +R + G+S GA + ++L+ P
Sbjct: 76 ERIDPTRFEQKS--ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHP 133
Query: 782 HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ + + + L++ G D
Sbjct: 134 GIVRLAALLRP------------------------MPVLDHVPATDLAGIRTLIIAGAAD 169
Query: 842 NNSGTLTMQSDRFFNALKGHGALCRLVILP 871
T L HGA I+P
Sbjct: 170 E---TYGPFVPALVTLLSRHGAEVDARIIP 196
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* Length = 278 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 36/289 (12%), Positives = 63/289 (21%), Gaps = 57/289 (19%)
Query: 624 ITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYP----- 678
I D + ++ + + R V +P P+ YP
Sbjct: 3 IADKGSVFYHFSATSFDSVDGTRHYRVWT----AVPNTTAPAS---------GYPILYML 49
Query: 679 -GE--FKSKDAAGQVRGSPNEFPRI-----GSTSVLLWLARGF------AILGGPTTPII 724
G D + S P I + +R +
Sbjct: 50 DGNAVMDRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGR 109
Query: 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784
++ F + L VE+ + + + GHSYG + F
Sbjct: 110 FSRKSGGSNNFRQLLETRIAPKVEQGLN---IDRQRRGLWGHSYGGLFVLDSWLS-SSYF 165
Query: 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNS 844
+ S + + ++ K + ++ G
Sbjct: 166 RSYYSASPSL---------------GRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGD 210
Query: 845 GTLTMQSD------RFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887
T LK G P HG S L
Sbjct: 211 NRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHGPMFNASFRQAL 259
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 52/215 (24%)
Query: 196 WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255
S DGK +AF + +WVAD++T ++ + ++ +I + W +S
Sbjct: 66 ISPDGKKIAFM----RANEEKKVSEIWVADLETLSSKKILEAKNI------RSLEWNEDS 115
Query: 256 TLLVCTIPLLRGDPP-----KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310
L+ R D P EK T + + +E+++ F
Sbjct: 116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSS 175
Query: 311 YA-------------------TTQLVLVSLDGTVKE-----IGPPAVYTSLDPSPDEKYI 346
+ + +E + AV D + I
Sbjct: 176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAV------DSDGERI 229
Query: 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381
L+ ++ DG V +
Sbjct: 230 LLYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 31/301 (10%), Positives = 73/301 (24%), Gaps = 83/301 (27%)
Query: 83 VATEDEDNLEGRYRLPPP--EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARP 140
+ +E + + ++I++A + +L ++ K+L + + + +
Sbjct: 76 MRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFED 135
Query: 141 EEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDG 200
+ D + + + E+ + + + W +D
Sbjct: 136 DVPA---WFDDLGFFDGEKT-----TFWIFDTESE-----EVIEEFEKPRFSSGIWHRDK 182
Query: 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-------SPD---IYLNAIFDNFV 250
+ R + + GK +F+ D I L +
Sbjct: 183 IVVNVPHREIIPQYF---KFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKY 239
Query: 251 WVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFD- 309
++ L + E + DE D +
Sbjct: 240 MSEHNKLYI---------------------YDGKEVM----------GILDEVDRGVGQA 268
Query: 310 -------YYATT---QLVLVSLDGTVKEI------------GPPAVYTSLDPS-PDEKYI 346
Y+ + L DG +K I VY + E +
Sbjct: 269 KIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFT 328
Query: 347 L 347
Sbjct: 329 W 329
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 51/314 (16%), Positives = 86/314 (27%), Gaps = 96/314 (30%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLF----WSYPGEFKSKD 685
+P A ++ + + + G+ L+A LYLP + LP + + E S
Sbjct: 59 TFPLSAKVEHRKVTFANRYGITLAADLYLPKNRGGDR---LPAIVIGGPFGAVKEQSSGL 115
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745
A G L + GG + D D A
Sbjct: 116 YA-------QTMAERG-FVTLAFDPSYTGESGG-QPRNVASPDINTED---------FSA 157
Query: 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--------FCCGIARSGAYNRT 797
AV+ + + +I V G M N +A + + S YN +
Sbjct: 158 AVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDS 217
Query: 798 LTPFGFQ------NEDRTL----------------------------------------- 810
+T + R
Sbjct: 218 VTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRA 277
Query: 811 ------WEATS--TYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861
W T+ +++ M ++ +PILL+HGE S+ + A
Sbjct: 278 VNSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERA----HSRYFSETAYAAAAEP 333
Query: 862 GALCRLVILPFESH 875
L+I+P SH
Sbjct: 334 K---ELLIVPGASH 344
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782
+ EG + D + ++E + + I G+S GA + A+LL H +
Sbjct: 85 RLAEGIFDEED--LIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN 142
Query: 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
+ V AN K + + G D
Sbjct: 143 ALKGAVLHHP------------------------MVPRRGMQLANLAGKSVFIAAGTND 177
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 45/296 (15%), Positives = 80/296 (27%), Gaps = 63/296 (21%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
L I +R DG+QL T P G G F +
Sbjct: 9 HHSSGRENLYFQGMATITLER-DGLQLVGTREEPFG------EIYDMAIIF-HG-FTAN- 58
Query: 686 AAGQVRGSPNEFPRIGSTSVLL--WLA-RGFAIL-----GGPTTPIIGEGDEEANDRFVE 737
R S + L A + G G+ D + + V
Sbjct: 59 -------------RNTSLLREIANSLRDENIASVRFDFNGH------GDSDGKFENMTVL 99
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-- 795
+ A A + V H I + GH+ G + + L P L + + A
Sbjct: 100 NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLK 157
Query: 796 RTLTPFGFQNEDRTLWEATSTYV---------------EMSPFMSANKLKKPILLVHGEE 840
Q ++ + + + KP+ L+HG +
Sbjct: 158 GDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTD 217
Query: 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896
D + S ++ + L ++ H ++ + + T +LQ
Sbjct: 218 D-TVVSPNA-SKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 36/203 (17%)
Query: 692 GSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVE 748
GSPN+ + L R G+ + P G E + + A + AAV
Sbjct: 33 GSPNDMNFMAR-----ALQRSGYGVYV-PLFSGHGTVEPLDILTKGNPDIWWAESSAAVA 86
Query: 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY--NRTLTPF----- 801
+ + +K+ V G S G L P + G+ S L P
Sbjct: 87 HMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYA 142
Query: 802 -------GFQNEDRTLWEATSTYV-EMSPFMS-----ANKLKKPILLVHGEEDNNSGTLT 848
G +E + + + F + N +K+P + +D
Sbjct: 143 EYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQD--ELVDG 200
Query: 849 MQSDRFFNALKGHGALCRLVILP 871
+ + +AL A
Sbjct: 201 RLAYQLRDALINA-ARVDFHWYD 222
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 27/123 (21%)
Query: 722 PIIGEGDEEANDRFVEQLVACAEA---AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
+ G G + +E L + V + + K+ G+S GA + N+
Sbjct: 62 KLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFL 121
Query: 779 HAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHG 838
F IA G + K + L +
Sbjct: 122 RGKINFDKIIAFHGMQLEDFEQ------------------------TVQLDDKHVFLSYA 157
Query: 839 EED 841
D
Sbjct: 158 PND 160
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 19/158 (12%), Positives = 32/158 (20%), Gaps = 34/158 (21%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
+ +G I + S A A + L I G N T
Sbjct: 93 LCTVYHWLQTKG---TQNIGLIAASLSA-RVAYEVISDLEL-SFLITAVGVVNLRDTLEK 147
Query: 803 FQNEDRTLWEATSTYVEM-------------------------SPFMSANKLKKPILLVH 837
D ++ S P++
Sbjct: 148 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFT 207
Query: 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875
D+ + ++ C+L L SH
Sbjct: 208 ANNDDW--VKQEEVYDMLAHIRTGH--CKLYSLLGSSH 241
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 30/233 (12%), Positives = 53/233 (22%), Gaps = 46/233 (19%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P+P +A+ + S +Y P P + W G
Sbjct: 8 GAPFPAVANFDRSGPYTVSSQSEGPSCRIYRPRDLGQG-GVRHPVILWG-NG-------- 57
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747
P+ + + S W + GF + T G G E E
Sbjct: 58 --TGAGPSTYAGLLS----HWASHGFVVAA-AETSNAGTGREMLACLDYLV----RENDT 106
Query: 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
G + ++ GHS G + + + G
Sbjct: 107 PYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQDTR------VRTTAPIQPYTLGLGH---- 156
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S + + P+ L+ G D + +
Sbjct: 157 --------------DSASQRRQQGPMFLMSGGGDTIAFPYLNA-QPVYRRANV 194
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 47/263 (17%), Positives = 68/263 (25%), Gaps = 74/263 (28%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV-----RGSPNEFPRIGS 702
V+L L +P G A G V GS PR
Sbjct: 20 GEVKLKGNLVIPNG------------------------ATGIVLFAHGSGSSRYSPRNRY 55
Query: 703 TSVLLWLARGFAILG----GPTTPIIGEGDEEANDRF----VEQLVACAEAAVEEVVRRG 754
+ +L G A L E + + R + L + A + +
Sbjct: 56 VAEVLQ-QAGLATLLIDLLTQ-----EEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNP 109
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 814
K+ G S G A P ++R G L
Sbjct: 110 DTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGG---------RPDLAPSALP--- 157
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
+K P LL+ G D + AL+ RLVI+P S
Sbjct: 158 -------------HVKAPTLLIVGGYDLPVIAMNED------ALEQLQTSKRLVIIPRAS 198
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H + ++ V W Y
Sbjct: 199 HLFEEPGALTAVAQLASEWFMHY 221
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGI----------ARSGAYNRTLTPFGFQNED 807
P+ ++V G + G +M A L +F G AR+ Y +
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEED 841
T + + +++ AN ++ I + G D
Sbjct: 70 PTANMKSWSGNQIASV--ANLGQRKIYMWTGSSD 101
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 46/264 (17%), Positives = 75/264 (28%), Gaps = 39/264 (14%)
Query: 649 GVQLSATLYLPPGYDPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGSPNE 696
++ +YLPP + G P L+W S G +S G V +P+
Sbjct: 27 NCKMKFAVYLPPKAE---TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDT 83
Query: 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGD-------EEANDRFVEQLVACAEAAVEE 749
PR G I G + G G E+ E +
Sbjct: 84 SPR------------GCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQL 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
+ P ++++ GHS G P + A + N L P+G +
Sbjct: 132 INANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGY 191
Query: 810 LWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
L S + IL+ G++D + D F A
Sbjct: 192 LGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEKKIPVV 251
Query: 867 LVILPFESHGYAARESIM--HVLW 888
+ H Y + + H+
Sbjct: 252 FRLQEDYDHSYYFIATFITDHIRH 275
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 6e-04
Identities = 24/154 (15%), Positives = 38/154 (24%), Gaps = 20/154 (12%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
S L +P G S GP P L W +P E + V
Sbjct: 61 ATASGVLLIPGGERCS--GPYPLLGWGHPTEALRAQEQAKEIRDAKGD----DPLVTRLA 114
Query: 710 ARGFAI-------LGGPTTPIIG--EGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK 760
++G+ + LG EA+ + AA + K
Sbjct: 115 SQGYVVVGSDYLGLGKSNYAYHPYLHSASEASAT-----IDAMRAARSVLQHLKTPLSGK 169
Query: 761 IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794
+ + G+S G +
Sbjct: 170 VMLSGYSQGGHTAMATQREIEAHLSKEFHLVASA 203
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 41/235 (17%), Positives = 61/235 (25%), Gaps = 65/235 (27%)
Query: 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL 709
T+Y P + + S + G+ S + WL
Sbjct: 81 GFGGGTIYYPRE-----NNTYGAIAIS------------------PGYT--GTQSSIAWL 115
Query: 710 ARGFAILG----GPTTPIIGEGDEEANDRFVEQLVACAE--AAVEEVVRRGVAHPSKIAV 763
A G T + D QL A + R S++AV
Sbjct: 116 GERIASHGFVVIAIDTN----TTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAV 171
Query: 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823
GHS G LA I LTP+
Sbjct: 172 MGHSMGGG-GTLRLASQRPDLKAAIP--------LTPWHLNK------------------ 204
Query: 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878
S + P L++ E D + T+ S F+N++ + L SH
Sbjct: 205 -SWRDITVPTLIIGAEYDTIASV-TLHSKPFYNSIPS-PTDKAYLELDGASHFAP 256
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 25/171 (14%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLF-WS-YPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+DGV+L + LP G P + + Y + SP+ + +
Sbjct: 33 RDGVKLHTVIVLPKG-----AKNAPIVLTRTPY-----DASGRTERLASPHMKDLLSAGD 82
Query: 705 VLLWLARGFAIL----------GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG 754
+++ G+ + G + A ++ +V+
Sbjct: 83 -DVFVEGGYIRVFQDVRGKYGSEGDYVMT--RPLRGPLNPSEVDHATDAWDTIDWLVKNV 139
Query: 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805
K+ + G SY F L + + S + + F
Sbjct: 140 SESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFNY 190
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 958 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.89 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.89 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.88 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.87 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.87 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.86 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.86 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.86 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.86 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.85 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.85 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.85 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.85 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.85 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.85 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.85 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.85 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.85 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.84 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.84 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.84 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.83 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.82 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.82 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.82 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.82 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.82 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.82 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.81 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.81 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.81 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.8 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.8 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.8 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.8 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.8 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.8 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.8 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.8 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.79 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.78 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.78 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.78 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.78 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.78 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.78 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.78 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.77 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.77 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.77 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.77 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.77 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.77 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.77 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.76 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.76 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.76 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.76 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.75 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.74 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.74 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.74 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.74 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.74 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.74 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.74 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.74 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.73 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.73 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.73 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.73 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.72 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.72 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.72 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.72 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.71 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.71 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.71 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.71 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.71 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.7 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.7 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.7 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.7 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.69 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.69 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.69 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.69 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.69 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.69 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.69 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.68 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.68 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.68 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.68 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.68 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.68 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.68 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.67 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.67 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.67 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.67 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.66 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.66 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.66 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.66 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.66 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.66 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.66 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.65 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.65 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.65 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.65 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.65 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.65 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.64 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.64 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.64 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.64 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.64 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.64 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.64 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.64 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.64 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.64 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.64 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.64 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.64 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.64 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.63 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.63 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.63 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.63 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.63 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.63 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.63 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.63 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.62 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.62 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.62 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.61 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.61 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.61 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.61 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.61 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.61 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.61 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.61 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.61 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.61 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.61 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.6 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.6 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.6 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.6 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.6 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.6 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.6 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.6 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.59 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.59 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.59 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.59 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.59 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.58 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.58 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.58 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.58 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.58 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.58 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.58 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.58 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.57 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.57 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.57 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.57 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.57 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.57 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.56 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.56 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.56 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.56 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.56 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.56 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.56 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.55 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.55 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.55 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.54 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.54 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.54 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.54 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.54 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.54 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.54 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.54 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.53 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.53 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.53 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.53 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.52 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.52 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.52 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.52 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.52 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.52 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.52 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.51 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.51 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.51 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.51 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.51 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.51 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.51 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.51 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.51 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.5 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.5 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.5 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.5 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.5 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.5 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.49 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.49 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.49 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.49 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.49 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.49 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.48 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.48 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.48 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.48 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.48 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.48 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.48 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.48 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.47 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.46 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.46 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.46 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.46 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.46 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.45 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.45 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.45 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.45 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.45 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.44 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.44 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.44 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.44 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.43 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.43 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.43 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.43 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.41 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.41 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.4 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.4 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.39 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.39 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.39 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.38 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.38 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.38 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.38 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.37 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.37 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.37 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.37 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.36 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.36 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.03 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.34 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.34 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.33 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.33 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.33 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.32 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.3 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.3 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.28 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.27 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.25 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.25 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.25 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.24 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.23 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.23 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.23 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.2 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.2 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.19 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.19 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.19 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.19 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.18 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.17 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.17 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.16 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.16 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.16 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.16 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.15 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.14 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.14 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.14 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.13 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.13 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.11 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.11 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.11 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.11 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.11 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.11 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.1 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.09 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.09 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.08 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.06 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.05 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.04 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.03 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.03 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.03 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.02 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.0 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.98 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.98 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.93 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.91 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.87 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.87 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.86 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.84 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.84 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.83 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.82 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.82 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.8 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.75 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.73 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.72 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.71 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.7 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.69 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.69 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.68 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.67 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.67 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.66 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.65 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.62 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.6 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.59 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.59 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.55 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.54 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.54 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.53 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.52 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.52 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.52 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.49 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.49 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.48 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.47 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.46 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.46 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.45 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.43 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.42 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.41 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.41 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.39 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.37 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.37 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.36 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.34 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.33 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.32 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.29 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.27 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.27 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.22 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.18 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.17 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.16 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.15 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.14 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.13 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.13 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.12 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.11 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.09 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.07 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.02 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.97 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.95 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.95 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.9 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.9 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.86 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.86 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.79 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.69 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.67 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.51 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.47 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.46 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.37 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.15 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.1 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.06 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.02 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.02 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.99 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=540.59 Aligned_cols=629 Identities=14% Similarity=0.090 Sum_probs=441.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee-ccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l-t~~~~~ 188 (958)
....++|||||++|+.. . ++|++|++.+ +..+.+ ++....
T Consensus 18 ~~~~~~w~~dg~~~~~~-~----------------------------------~~i~~~~~~~----~~~~~~~~~~~~~ 58 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-E----------------------------------NNILVFNAEY----GNSSVFLENSTFD 58 (740)
T ss_dssp CCCCEEECSSSEEEEEE-T----------------------------------TEEEEEETTT----CCEEEEECTTTTT
T ss_pred cccccEECCCCcEEEEc-C----------------------------------CcEEEEECCC----CceEEEEechhhh
Confidence 46689999999877764 3 3799999865 444444 322111
Q ss_pred C-cc--cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCC
Q 002164 189 A-KL--NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 189 ~-~~--~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
. .+ ..++|||||++|+|..........+...++|++|+++|+.++|+..+.. +..++|||||+.|+|+
T Consensus 59 ~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~-----~~~~~~SPdG~~la~~---- 129 (740)
T 4a5s_A 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN-----TQWVTWSPVGHKLAYV---- 129 (740)
T ss_dssp TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT-----EEEEEECSSTTCEEEE----
T ss_pred hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc-----ceeeEECCCCCEEEEE----
Confidence 1 22 2389999999999987533222234457899999999999988765543 6689999999999998
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCcc---c-------
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAV---Y------- 334 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~---~------- 334 (958)
...+||++++ +|+.++|+..+. +
T Consensus 130 ----------------------------------------------~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~ 163 (740)
T 4a5s_A 130 ----------------------------------------------WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW 163 (740)
T ss_dssp ----------------------------------------------ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred ----------------------------------------------ECCeEEEEECCCCceEEEcCCCCccceecCcccc
Confidence 2346999999 888888875411 1
Q ss_pred ----------cccccCCCCcEEEEEeecCCcccc--c-------------------cCCC--CCceeEEEeccC---c--
Q 002164 335 ----------TSLDPSPDEKYILISSIHRPYSFI--V-------------------PCGR--FPRQVGVWTTDG---I-- 376 (958)
Q Consensus 335 ----------~~~~~SpDGk~l~~~~~~~~~~~~--~-------------------~~~~--~~~~i~l~d~~~---~-- 376 (958)
..+.|||||++|+|.+.+...... . +.+. ...+|++||+++ +
T Consensus 164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 247899999999999755331100 0 0011 112688999988 6
Q ss_pred -eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-------c
Q 002164 377 -FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-------P 448 (958)
Q Consensus 377 -~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-------~ 448 (958)
..+.+..... ..+....+..++|||||+.++++.+.. .....|+++++ ++++ .
T Consensus 244 ~~~~~l~~~~~-------~~~~~~~~~~~~wspdg~~~~~~~~r~---------~~~~~i~~~d~---~tg~~~~~~~~~ 304 (740)
T 4a5s_A 244 ATSIQITAPAS-------MLIGDHYLCDVTWATQERISLQWLRRI---------QNYSVMDICDY---DESSGRWNCLVA 304 (740)
T ss_dssp CCEEEECCCHH-------HHTSCEEEEEEEEEETTEEEEEEEESS---------TTEEEEEEEEE---ETTTTEEEECGG
T ss_pred ceEEEecCCcc-------CCCCCeEEEEEEEeCCCeEEEEEeCCC---------CCEEEEEEEEC---CCCccccceeEE
Confidence 4555542100 000112346789999999777764432 22346899996 4544 3
Q ss_pred eEE-Ee-ecccc-----CceeeecCCceEE-EEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccC
Q 002164 449 EIL-HK-LDLRY-----GGISWCDDSLALV-YESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTST 520 (958)
Q Consensus 449 ~~l-~~-~~~~~-----~~~~~spDg~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 520 (958)
+++ .. ....+ ..+.|||||+.|+ +.++.++ ..+||+++++++ ..+.++...... . ..+++|
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G-~~~l~~~~~~~~--~~~~lT~g~~~v-~-------~~~~~d 373 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKK--DCTFITKGTWEV-I-------GIEALT 373 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCS--SCEESCCSSSCE-E-------EEEEEC
T ss_pred EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC-ceEEEEEECCCC--ceEecccCCEEE-E-------EEEEEe
Confidence 334 22 22222 3799999999998 6655554 488999999884 556666543322 1 113467
Q ss_pred CceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE-EEecCC-cccccceeEeecCCCccccccccCCEE
Q 002164 521 GTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE-RIWESD-KEKYYETTVALMSDQTEGDLYLNQLKI 598 (958)
Q Consensus 521 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l 598 (958)
|+.|+|..... .. .....+||.+++++++.+ +|+... .. . .....++||+||+.+
T Consensus 374 ~~~i~f~~~~~------------~~--~~~~~~ly~v~~~g~~~~~~lt~~~~~~----~-----~~~~~~~~S~dg~~~ 430 (740)
T 4a5s_A 374 SDYLYYISNEY------------KG--MPGGRNLYKIQLIDYTKVTCLSCELNPE----R-----CQYYSVSFSKEAKYY 430 (740)
T ss_dssp SSEEEEEESCG------------GG--CTTCBEEEEEETTEEEEEEESSTTTSTT----T-----BCBEEEEECTTSSEE
T ss_pred CCEEEEEEecC------------CC--CCceeEEEEEECCCCCcceeeccccCCC----C-----CceEEEEECCCCCEE
Confidence 88999887320 00 112458999999887665 565321 00 0 011236899999999
Q ss_pred EEEEecCCCCceEEEEECCCCCeeEeecCCCCC----CCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEE
Q 002164 599 LTSKESKTENTQYYIQSWPDKKSCQITDFPHPY----PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLF 674 (958)
Q Consensus 599 ~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~----~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv 674 (958)
++.++++. |+.+++++..+++..++...+..+ ........+.+++ ..||..+++++++|+++++.+ ++|+||
T Consensus 431 ~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~~~~~~~--~~P~vv 506 (740)
T 4a5s_A 431 QLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPPHFDKSK--KYPLLL 506 (740)
T ss_dssp EEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECTTCCTTS--CEEEEE
T ss_pred EEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCCCCCCCC--CccEEE
Confidence 99999887 788999998888776766554322 2333345677777 679999999999999886544 599999
Q ss_pred EECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHH
Q 002164 675 WSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEV 750 (958)
Q Consensus 675 ~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l 750 (958)
++||++..... ...| ...+...++ ++||+|+++++++..++|..+.. ..+....++|+.+++++|
T Consensus 507 ~~HGg~~~~~~--------~~~~---~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l 575 (740)
T 4a5s_A 507 DVYAGPCSQKA--------DTVF---RLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQF 575 (740)
T ss_dssp ECCCCTTCCCC--------CCCC---CCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHH
T ss_pred EECCCCccccc--------cccc---CcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHH
Confidence 99998643210 0111 112344566 49999999888766555544321 233446789999999999
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc-cc--hhhhcHHHHHhcCcccccC
Q 002164 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DR--TLWEATSTYVEMSPFMSAN 827 (958)
Q Consensus 751 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~sp~~~~~ 827 (958)
.+++.+|++||+|+||||||++|+.++.++|++|+++|+.+|+.++......+... .+ ..+.+++.|...+|+..+.
T Consensus 576 ~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 655 (740)
T 4a5s_A 576 SKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAE 655 (740)
T ss_dssp HTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHHHHHHCCSSTTTTHHHHHHSCSGGGGG
T ss_pred HhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHHHHHcCCCCccccHHHHHhCCHHHHHh
Confidence 99898999999999999999999999999999999999999998754322111100 11 1256677888999999999
Q ss_pred CCCC-CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 828 KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 828 ~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++++ |+||+||++|.+|| +.++.+++++|+..++++++++||+++|.+...+...++++.+.+||.++|....
T Consensus 656 ~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 729 (740)
T 4a5s_A 656 NFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPA 729 (740)
T ss_dssp GGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred cCCCCcEEEEEcCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcCCCC
Confidence 9987 99999999999999 9999999999999999999999999999997677788899999999999997543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=530.01 Aligned_cols=629 Identities=17% Similarity=0.220 Sum_probs=443.6
Q ss_pred ChhHHHhhc-----CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCC
Q 002164 99 PPEIREIVD-----APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (958)
Q Consensus 99 ~~~~~~~~~-----~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d 173 (958)
+..+.+++. ...+..++|||||++|+|.+.. ++.... ..|++|++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~----------------------d~~~~~-----~~i~~~d~~~- 73 (741)
T 2ecf_A 22 KLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGK----------------------DSDRNQ-----LDLWSYDIGS- 73 (741)
T ss_dssp CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECC----------------------SSCTTE-----EEEEEEETTT-
T ss_pred cccHHHHhccCCcCCCCCCCceEecCCCEEEEEecc----------------------CCCCcc-----cEEEEEECCC-
Confidence 345666664 4457789999999999999862 110001 3799999855
Q ss_pred CCCCceeeeccCCCC-----------------------CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-
Q 002164 174 GKLGQEIEIQGFPDG-----------------------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG- 229 (958)
Q Consensus 174 g~~~~~~~lt~~~~~-----------------------~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g- 229 (958)
+..+++...... ..+..++|||||++|+|.. ...||+++++++
T Consensus 74 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~----------~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 74 ---GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPL----------GGELYLYDLKQEG 140 (741)
T ss_dssp ---CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEE----------TTEEEEEESSSCS
T ss_pred ---CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEe----------CCcEEEEECCCCC
Confidence 444444322111 1268899999999999976 279999999999
Q ss_pred --ceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhH
Q 002164 230 --KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDL 307 (958)
Q Consensus 230 --~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~ 307 (958)
+.++++..... +..++|||||++|++.
T Consensus 141 ~~~~~~l~~~~~~-----~~~~~~SPDG~~la~~---------------------------------------------- 169 (741)
T 2ecf_A 141 KAAVRQLTHGEGF-----ATDAKLSPKGGFVSFI---------------------------------------------- 169 (741)
T ss_dssp TTSCCBCCCSSSC-----EEEEEECTTSSEEEEE----------------------------------------------
T ss_pred cceEEEcccCCcc-----cccccCCCCCCEEEEE----------------------------------------------
Confidence 78888765443 6789999999999988
Q ss_pred HHHhhcceEEEEEc-CCeeeecCCC-cc-----------------ccccccCCCCcEEEEEeecCCcccc----------
Q 002164 308 FDYYATTQLVLVSL-DGTVKEIGPP-AV-----------------YTSLDPSPDEKYILISSIHRPYSFI---------- 358 (958)
Q Consensus 308 ~~~~~~~~l~~~~~-~g~~~~l~~~-~~-----------------~~~~~~SpDGk~l~~~~~~~~~~~~---------- 358 (958)
...+||++++ +|+.++++.. .. +..+.|||||++|++.+.+......
T Consensus 170 ----~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 170 ----RGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp ----ETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSC
T ss_pred ----eCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCc
Confidence 1236999999 8888877754 21 3678999999999999765321000
Q ss_pred -------cc-CCC--CCceeEEEeccC-ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 359 -------VP-CGR--FPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 359 -------~~-~~~--~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
.+ .+. ....|++||+++ ++.+.+..... ....+..+.| |||+.|++......
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~-pDg~~l~~~~~~~~------ 308 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKE----------QDIYLARVNW-RDPQHLSFQRQSRD------ 308 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSC----------SSEEEEEEEE-EETTEEEEEEEETT------
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCC----------cceEEEEEEe-CCCCEEEEEEeccc------
Confidence 00 000 112788899988 77666543210 1134467899 99999998643211
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeecc-----ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDL-----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
.....|+++++ ++++.+.+..... .+..+.|||||+ +++.+..++ ..+||.++++++ ...++...
T Consensus 309 --~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~---~~~l~~~~ 378 (741)
T 2ecf_A 309 --QKKLDLVEVTL---ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK---AAALTHGN 378 (741)
T ss_dssp --SSEEEEEEEET---TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC---EEESCCSS
T ss_pred --CCeEEEEEEEC---CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC---eeeeeecc
Confidence 23457999996 5666666643322 345799999999 666655544 378999997762 33333322
Q ss_pred CccccCCCCCCce-EeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEe
Q 002164 503 SEDVYSDPGSPMM-RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (958)
Q Consensus 503 ~~~~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~ 581 (958)
. .+.. + .|||||++|++..... + ....+||.++++++..++|+...+ +.
T Consensus 379 ~-~v~~------~~~~s~dg~~l~~~~~~~------------~----~~~~~l~~~~~~g~~~~~l~~~~~------~~- 428 (741)
T 2ecf_A 379 W-SVDE------LLAVDEKAGLAYFRAGIE------------S----ARESQIYAVPLQGGQPQRLSKAPG------MH- 428 (741)
T ss_dssp S-CEEE------EEEEETTTTEEEEEECSS------------C----TTCBEEEEEETTCCCCEECCCSCS------EE-
T ss_pred e-EEEe------EeEEeCCCCEEEEEEeCC------------C----CceEEEEEEEcCCCCeeecccCCC------ce-
Confidence 1 1111 3 5999999998876321 0 013368888877666777765222 11
Q ss_pred ecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCC-----CCCCC--CCCcEEEEEEEeCCC-eEEE
Q 002164 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-----PYPQL--ASLQKELIKYQRKDG-VQLS 653 (958)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~-----~~~~~--~~~~~~~~~~~~~dg-~~l~ 653 (958)
.++|||||+.+++..++...|+++|+++..++..+.|+..+. .+... .....+.+++++.+| ..++
T Consensus 429 ------~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 502 (741)
T 2ecf_A 429 ------SASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLN 502 (741)
T ss_dssp ------EEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEE
T ss_pred ------EEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEE
Confidence 257999999999999999999999999987766666664332 22223 444688999999999 9999
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCc-HHHHHHHHCCcEEEEcCCCCCCCCCCccc-
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGFAILGGPTTPIIGEGDEEA- 731 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~~vl~~~~~~~~G~G~~~~- 731 (958)
++++.|+++++.+ ++|+||++||++..... ...|..... ..+..|+++||+|+++++++..+.|..+.
T Consensus 503 ~~~~~P~~~~~~~--~~p~vv~~hG~~~~~~~--------~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~ 572 (741)
T 2ecf_A 503 YSVIKPAGFDPAK--RYPVAVYVYGGPASQTV--------TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGG 572 (741)
T ss_dssp EEEECCSSCCTTS--CEEEEEECCCSTTCCSC--------SSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHH
T ss_pred EEEEeCCCCCCCC--CcCEEEEEcCCCCcccc--------cccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhH
Confidence 9999998765433 48999999998643210 011211100 35678899999999966654433332211
Q ss_pred --chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccc-ccc
Q 002164 732 --NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-EDR 808 (958)
Q Consensus 732 --~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-~~~ 808 (958)
...+....+.|+.+++++|.+++.+|+++|+|+||||||++++.++.++|++|+++|+.+|+.++......+.. ...
T Consensus 573 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 652 (741)
T 2ecf_A 573 ALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMD 652 (741)
T ss_dssp TTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBHHHHHHHHC
T ss_pred HHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhccccchhhcC
Confidence 11222456899999999999998889999999999999999999999999999999999998774322111100 012
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002164 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (958)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~ 888 (958)
.++...+.|...+|+..+.++++|+|++||++|.++| +.++.+++++|+..+++++++++|+++|.+..... .++.+
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~ 729 (741)
T 2ecf_A 653 LPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVL--FTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA-LHRYR 729 (741)
T ss_dssp CTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHHH-HHHHH
T ss_pred CcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCC--HHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCch-hHHHH
Confidence 3455667788889999999999999999999999999 99999999999999999999999999999864333 77889
Q ss_pred HHHHHHHHhhc
Q 002164 889 ETDRWLQKYCV 899 (958)
Q Consensus 889 ~i~~fl~~~l~ 899 (958)
.+.+||+++|+
T Consensus 730 ~i~~fl~~~l~ 740 (741)
T 2ecf_A 730 VAEAFLGRCLK 740 (741)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=519.12 Aligned_cols=632 Identities=12% Similarity=0.059 Sum_probs=422.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC-
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~- 188 (958)
....++|||||++++ ...+ +.|++|++.+ ++.+.+......
T Consensus 18 ~~~~~~~spdg~~~~-~~~d---------------------------------g~i~~~d~~~----g~~~~~~~~~~~~ 59 (723)
T 1xfd_A 18 HDPEAKWISDTEFIY-REQK---------------------------------GTVRLWNVET----NTSTVLIEGKKIE 59 (723)
T ss_dssp CCCCCCBSSSSCBCC-CCSS---------------------------------SCEEEBCGGG----CCCEEEECTTTTT
T ss_pred cccccEEcCCCcEEE-EeCC---------------------------------CCEEEEECCC----CcEEEEecccccc
Confidence 366899999999554 3322 3789999865 444444321111
Q ss_pred -CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 189 -AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 189 -~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
..+..++|||||++|+|...............||++++++|+.++++..... ...+..++|||||+.|+|.
T Consensus 60 ~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~SPdG~~la~~------ 131 (723)
T 1xfd_A 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS--NAKLQYAGWGPKGQQLIFI------ 131 (723)
T ss_dssp TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC--SCCCSBCCBCSSTTCEEEE------
T ss_pred ccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc--cccccccEECCCCCEEEEE------
Confidence 1378899999999999986422111122347899999999988777654331 1114579999999999988
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccc----------
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVY---------- 334 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~---------- 334 (958)
...+||++++ +|+.++++.. ..+
T Consensus 132 --------------------------------------------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 132 --------------------------------------------FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp --------------------------------------------ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred --------------------------------------------ECCeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 1236999999 7877777654 222
Q ss_pred --------cccccCCCCcEEEEEeecCCccccc-------------------cCC--CCCceeEEEeccCceE-EEeccC
Q 002164 335 --------TSLDPSPDEKYILISSIHRPYSFIV-------------------PCG--RFPRQVGVWTTDGIFV-RELCDL 384 (958)
Q Consensus 335 --------~~~~~SpDGk~l~~~~~~~~~~~~~-------------------~~~--~~~~~i~l~d~~~~~~-~~l~~~ 384 (958)
..++|||||++|+|.+.+....... +.+ .....+++||+++++. +.+...
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 5789999999999998653210000 000 1123799999987763 555432
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--cccc----
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRY---- 458 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~---- 458 (958)
... ......+..+.|||||+.|++..... .....|+++++ ++++...+... ...+
T Consensus 248 ~~~-------~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 248 DDP-------RMREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCDA---TTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp CCG-------GGSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEET---TTCCEEEEEEEECSSCCCCCC
T ss_pred ccC-------CCccceeEEEEEeCCCeEEEEEEcCC---------CCeEEEEEEeC---CCCcceEEEEeccCCEEeccC
Confidence 100 00012346799999999776653321 22356899996 56665555322 2222
Q ss_pred CceeeecCCceEEEE-Eeccc---cceEEEEEc-CCCCCC-CcEEEeccCCccccCCCCCCceEeccCCceEEEEeeecc
Q 002164 459 GGISWCDDSLALVYE-SWYKT---RRTRTWVIS-PGSKDV-APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (958)
Q Consensus 459 ~~~~~spDg~~l~~~-~~~~~---~~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (958)
..+.|||||+.|++. ...++ ...+||+++ ..++.. ....++...... .. .++|||||++|+|.....
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~-~~-----~~~~spdg~~l~~~~~~~- 381 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV-TK-----ILAYDEKGNKIYFLSTED- 381 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE-EE-----EEEEETTTTEEEEEESSS-
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE-Ee-----eeEEcCCCCEEEEEEcCC-
Confidence 379999999999997 44333 146899999 455310 033333221111 10 157999999999886321
Q ss_pred CCCcEEEEccCCCCCCCCCCeEEEEECCCC-ceEEEecC--CcccccceeEeecCCCccccccccCCEEEEEEecCCCCc
Q 002164 533 DEGTYILLNGNGATPEGNIPFLDLFDINTG-SKERIWES--DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (958)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g-~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (958)
.....+||.++++++ +.++|+.. ... ....++|||||+.+++..+++..|.
T Consensus 382 ---------------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~spdg~~l~~~~~~~~~p~ 435 (723)
T 1xfd_A 382 ---------------LPRRRQLYSANTVGNFNRQCLSCDLVENC-----------TYFSASFSHSMDFFLLKCEGPGVPM 435 (723)
T ss_dssp ---------------CTTCCEEEEECSSTTCCCBCSSTTSSSSC-----------CCCEEEECTTSSEEEEECCSSSSCC
T ss_pred ---------------CCcceEEEEEeCCCCCCcceecccccCCC-----------CeEEEEECCCCCEEEEEccCCCCCe
Confidence 012346888887664 44555432 110 0123579999999999999999887
Q ss_pred eEEEEECCCCCeeEeecCCC----CCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcc
Q 002164 610 QYYIQSWPDKKSCQITDFPH----PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685 (958)
Q Consensus 610 ~~~~~d~~~g~~~~Lt~~~~----~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~ 685 (958)
.++. +..+++...+...+. .+........+.+++++.+| ++++++|+|+++++.+ ++|+||++||++.....
T Consensus 436 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~--~~p~vv~~HG~~~~~~~ 511 (723)
T 1xfd_A 436 VTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTT--HYPLLLVVDGTPGSQSV 511 (723)
T ss_dssp EEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSS--CEEEEEECCCCTTCCCC
T ss_pred EEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCC--ccCEEEEEcCCCCcccc
Confidence 6654 655555333322221 11233344567888998898 9999999999875443 59999999998643110
Q ss_pred cCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 002164 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIA 762 (958)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~ 762 (958)
...|. .......|+++||+|+++++++..++|..+. ...+....++|+.++++++.+++.+|++||+
T Consensus 512 --------~~~~~--~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~ 581 (723)
T 1xfd_A 512 --------AEKFE--VSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVA 581 (723)
T ss_dssp --------CCCCC--CSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEE
T ss_pred --------Ccccc--ccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEE
Confidence 01111 1123445677999999977765555433221 1223346789999999999998888999999
Q ss_pred EEEeChHHHHHHHHHHhC----CCceeEEEEeccCCCCCCCCCCccc-ccchhhhcHHHHHhcCcccccCCCC-CCEEEE
Q 002164 763 VGGHSYGAFMTANLLAHA----PHLFCCGIARSGAYNRTLTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLK-KPILLV 836 (958)
Q Consensus 763 l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii 836 (958)
|+||||||++++.++.++ |++|+++|+.+|+.++......+.. ....++...+.+...++...+.+++ +|+||+
T Consensus 582 l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii 661 (723)
T 1xfd_A 582 VFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLII 661 (723)
T ss_dssp EEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEE
T ss_pred EEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcCCccCChhHHHhcChhhHHhhcCCCCEEEE
Confidence 999999999999999999 9999999999998875432111100 0011222333455667778888999 799999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||++|.+|| +.++.+++++|+..+.+++++++|+++|.+...+....+.+.+.+||.++|+
T Consensus 662 ~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 662 HPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp EETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred EeCCCCCcC--HhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999999999999999999999986667778889999999998874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-51 Score=498.21 Aligned_cols=569 Identities=14% Similarity=0.106 Sum_probs=406.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..++|||| ++|+|+. ...||++++++++.++++..... +..++|||||+.|+++
T Consensus 83 ~v~~~~~spd-~~~~~~~----------~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~-------- 138 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT----------QGGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYV-------- 138 (706)
T ss_dssp CCEEEEETTT-TEEEEEE----------TTEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEE--------
T ss_pred CceeEEECCC-CeEEEEE----------CCEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEE--------
Confidence 4788999999 8899875 36999999999998888765443 6689999999999987
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C-----CeeeecCCC-cc---------
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-----GTVKEIGPP-AV--------- 333 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~-----g~~~~l~~~-~~--------- 333 (958)
...+||++++ + |+.++++.. ..
T Consensus 139 ------------------------------------------~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 139 ------------------------------------------RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp ------------------------------------------ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred ------------------------------------------ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 2346999999 7 887777655 22
Q ss_pred ------ccccccCCCCcEEEEEeecCCccc-------------------ccc-CCCCCceeEEEeccCceEEEeccCCcc
Q 002164 334 ------YTSLDPSPDEKYILISSIHRPYSF-------------------IVP-CGRFPRQVGVWTTDGIFVRELCDLPLA 387 (958)
Q Consensus 334 ------~~~~~~SpDGk~l~~~~~~~~~~~-------------------~~~-~~~~~~~i~l~d~~~~~~~~l~~~~~~ 387 (958)
+..+.|||||++|++.+.+..... ..+ .......|++||+++++.+.+......
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 378899999999999874321000 000 011235799999998887666532111
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-CceEEEee-cc----ccCce
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKL-DL----RYGGI 461 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~-~~----~~~~~ 461 (958)
...+..+.|||||+.|++...... .....|+++++ +++ ..+.+... .. .+..+
T Consensus 257 ----------~~~~~~~~~spdg~~l~~~~~~~~--------~~~~~v~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 257 ----------EKFLTNLSWSPDENILYVAEVNRA--------QNECKVNAYDA---ETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp ----------TCEEEEEEECTTSSEEEEEEECTT--------SCEEEEEEEET---TTCCEEEEEEEEECSSCCCCCSCC
T ss_pred ----------ceeEeeEEEECCCCEEEEEEeCCC--------CCeeEEEEEEC---CCCceeeEEEEccCCCeECccCCc
Confidence 123467999999999988532110 12347899996 555 45555322 11 13568
Q ss_pred eeec--CCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEE
Q 002164 462 SWCD--DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYIL 539 (958)
Q Consensus 462 ~~sp--Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 539 (958)
.||| ||+.| +.+..++ ..+||.++.+++ ....++..... +.. .+.|||||++|++.....
T Consensus 316 ~~sp~~dg~~l-~~~~~~g-~~~l~~~~~~~~--~~~~l~~~~~~-v~~-----~~~~spdg~~l~~~~~~~-------- 377 (706)
T 2z3z_A 316 TFLPGSNNQFI-WQSRRDG-WNHLYLYDTTGR--LIRQVTKGEWE-VTN-----FAGFDPKGTRLYFESTEA-------- 377 (706)
T ss_dssp EECTTCSSEEE-EEECTTS-SCEEEEEETTSC--EEEECCCSSSC-EEE-----EEEECTTSSEEEEEESSS--------
T ss_pred eeecCCCCEEE-EEEccCC-ccEEEEEECCCC--EEEecCCCCeE-EEe-----eeEEcCCCCEEEEEecCC--------
Confidence 9999 99855 4444443 378999997653 23333322111 110 157999999999887321
Q ss_pred EccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 540 LNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 540 ~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
. ....+||.+|+++++.++++.... +. .++|||||+.+++...+...|.+++++++.++
T Consensus 378 ------~--~~~~~l~~~d~~~~~~~~l~~~~~------~~-------~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 378 ------S--PLERHFYCIDIKGGKTKDLTPESG------MH-------RTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ------C--TTCBEEEEEETTCCCCEESCCSSS------EE-------EEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ------C--CceEEEEEEEcCCCCceeccCCCc------eE-------EEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 0 012479999999988877764332 11 25799999999999999999999999999888
Q ss_pred CeeEeecCCCCCCCCCCCcEEEEEEEeCCC-eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCC
Q 002164 620 KSCQITDFPHPYPQLASLQKELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698 (958)
Q Consensus 620 ~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~ 698 (958)
+.+.++..+ .+..+.....+.++++..+| .++++++++|+++++.+ ++|+||++||++..... ...|.
T Consensus 437 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~--~~p~iv~~HGg~~~~~~--------~~~~~ 505 (706)
T 2z3z_A 437 SHTLLEAKN-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK--KYPVIVYVYGGPHAQLV--------TKTWR 505 (706)
T ss_dssp EEEEEECC-------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTS--CEEEEEECCCCTTCCCC--------CSCC-
T ss_pred eEeeccccc-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCC--CccEEEEecCCCCceee--------ccccc
Confidence 755555443 34445555678899999999 89999999999876543 48999999998643210 01121
Q ss_pred CcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 699 RIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 699 ~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.....+++.|+++||.|+++++++..+.|..+. ...+....++|+.+++++|.+++.+|++|++|+||||||++|+.
T Consensus 506 ~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 585 (706)
T 2z3z_A 506 SSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN 585 (706)
T ss_dssp ---CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred cCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHH
Confidence 111125678899999999976665544433221 12334567899999999999988889999999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCccc-ccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
++.++|++|+++|+.+|+.++......+.. ....++..++.|...+|...+.++++|+|++||++|.+|| +.++.++
T Consensus 586 ~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~ 663 (706)
T 2z3z_A 586 LMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVV--WQHSLLF 663 (706)
T ss_dssp HHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSC--THHHHHH
T ss_pred HHHhCCCcEEEEEEcCCccchHHHHhhhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCC--HHHHHHH
Confidence 999999999999999998774322111100 0123445667788889999999999999999999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+++|+..+++++++++|+++|.+... ...++.+.+.+||.++|
T Consensus 664 ~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 664 LDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998644 67788999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-51 Score=500.45 Aligned_cols=606 Identities=15% Similarity=0.096 Sum_probs=410.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCC--CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce---eeccCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDG--AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA---RPLFQS 237 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~--~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~---~~lt~~ 237 (958)
++|++|++.+ +..+++...... ..+..++|||||++|+|.......-.......||++++++|+. ++++
T Consensus 36 ~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-- 109 (719)
T 1z68_A 36 NNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-- 109 (719)
T ss_dssp SCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--
T ss_pred CCEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC--
Confidence 4799999865 555555421100 0278899999999999987522000012357899999999988 6553
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEE
Q 002164 238 PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLV 317 (958)
Q Consensus 238 ~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~ 317 (958)
.. +..++|||||+.|+|+ ...+|+
T Consensus 110 -~~-----~~~~~~SPDG~~la~~--------------------------------------------------~~~~i~ 133 (719)
T 1z68_A 110 -RP-----IQYLCWSPVGSKLAYV--------------------------------------------------YQNNIY 133 (719)
T ss_dssp -SS-----BCCEEECSSTTCEEEE--------------------------------------------------ETTEEE
T ss_pred -cc-----cccceECCCCCEEEEE--------------------------------------------------ECCeEE
Confidence 21 5689999999999988 224689
Q ss_pred EEEc-CCeeeecCCCc--c------------------ccccccCCCCcEEEEEeecCCcccc------------------
Q 002164 318 LVSL-DGTVKEIGPPA--V------------------YTSLDPSPDEKYILISSIHRPYSFI------------------ 358 (958)
Q Consensus 318 ~~~~-~g~~~~l~~~~--~------------------~~~~~~SpDGk~l~~~~~~~~~~~~------------------ 358 (958)
++++ +|+.++++..+ . ...++|||||++|+|.+.+......
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9998 88777776431 1 1478999999999998865321000
Q ss_pred -ccCC--CCCceeEEEeccCceEE---EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccC
Q 002164 359 -VPCG--RFPRQVGVWTTDGIFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (958)
Q Consensus 359 -~~~~--~~~~~i~l~d~~~~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 432 (958)
...+ ....++++||++++... .+... ..+......+..++|||||+.++.+.+.. ...
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~---------~~~ 277 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-------AMIASSDYYFSWLTWVTDERVCLQWLKRV---------QNV 277 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCC-------HHHHTSCEEEEEEEESSSSEEEEEEEESS---------TTE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCC-------ccCCCCcceEEEeEEeCCCeEEEEEeccc---------cCe
Confidence 0000 11237889999876542 22210 00011113346799999976433322211 123
Q ss_pred CeEEEEe----CCCCCCCCceEEE-----eeccccC-----ceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 433 DIIYTQQ----AEPVQGEGPEILH-----KLDLRYG-----GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 433 ~~l~~~~----~~~~~g~~~~~l~-----~~~~~~~-----~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
..|++++ + ++++.+.+. .....+. .+.|||||+.|++.........+||+++++++ +.+.+
T Consensus 278 ~~l~~~d~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~l 352 (719)
T 1z68_A 278 SVLSICDFREDW---QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQI 352 (719)
T ss_dssp EEEEEEEECSSS---SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEEC
T ss_pred EEEEEEcccCCC---CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEec
Confidence 4688998 5 344433333 2233344 78999999999986544444578999999875 34455
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCC--ceEEEecCCccccc
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG--SKERIWESDKEKYY 576 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g--~~~~l~~~~~~~~~ 576 (958)
+..... +.. +.++ ||++|+|..... .......+||.++++++ +.++|+..-..
T Consensus 353 t~~~~~-v~~------~~~~-d~~~i~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~--- 407 (719)
T 1z68_A 353 TSGKWE-AIN------IFRV-TQDSLFYSSNEF--------------EEYPGRRNIYRISIGSYPPSKKCVTCHLRK--- 407 (719)
T ss_dssp SCSSSC-EEE------EEEE-CSSEEEEEESCG--------------GGCTTCBEEEEEECSSSSCCEEESSTTTTT---
T ss_pred ccCceE-EEE------EEEE-eCCEEEEEEecC--------------CCCCceEEEEEEeCCCCCCCceeccCccCC---
Confidence 432221 111 4456 999999887320 00012346888888666 44566531100
Q ss_pred ceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCC----CCCCCCCcEEEEEEEeCCCeEE
Q 002164 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP----YPQLASLQKELIKYQRKDGVQL 652 (958)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~----~~~~~~~~~~~~~~~~~dg~~l 652 (958)
.. .....++||+||+.+++..+++..| .++++++.+|+..+++..+.. +........+.++++..+ .++
T Consensus 408 ~~-----~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 480 (719)
T 1z68_A 408 ER-----CQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-ITL 480 (719)
T ss_dssp TT-----BCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEE
T ss_pred CC-----CceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eEE
Confidence 00 0001257899999999998888777 688899888887777766542 233444467889999877 999
Q ss_pred EEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCccc
Q 002164 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEA 731 (958)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~ 731 (958)
++++++|+++++.+ ++|+||++||++..... ...| ...+...++ ++||+|+.+++++..++|..+.
T Consensus 481 ~~~~~~P~~~~~~~--~~p~vl~~hG~~~~~~~--------~~~~---~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~ 547 (719)
T 1z68_A 481 WYKMILPPQFDRSK--KYPLLIQVYGGPCSQSV--------RSVF---AVNWISYLASKEGMVIALVDGRGTAFQGDKLL 547 (719)
T ss_dssp EEEEEECTTCCSSS--CEEEEEEECCCTTBCCC--------CCCC---CCCHHHHHHHTTCCEEEEEECTTBSSSCHHHH
T ss_pred EEEEEeCCCCCCCC--CccEEEEECCCCCcCcc--------cccc---hhhHHHHHHhcCCeEEEEEcCCCCCCCchhhH
Confidence 99999999875433 58999999998643210 0111 112344454 7999999977765544443221
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccc-cc
Q 002164 732 ---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-ED 807 (958)
Q Consensus 732 ---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-~~ 807 (958)
...+....+.|+.+++++|.+++.+|++||+|+||||||++|+.++.++|++|+++|+.+|+.++......+.. ..
T Consensus 548 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 627 (719)
T 1z68_A 548 YAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFM 627 (719)
T ss_dssp GGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHHH
T ss_pred HHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhhc
Confidence 12234567899999999999988899999999999999999999999999999999999998875432111100 00
Q ss_pred chh--hhcHHHHHhcCcccccCCCCC-CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH
Q 002164 808 RTL--WEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM 884 (958)
Q Consensus 808 ~~~--~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~ 884 (958)
+.+ ++..+.|...+|+..+.++++ |+||+||++|.+|| +.++.+++++|+..+++++++++|+++|.+ ..+...
T Consensus 628 g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~ 704 (719)
T 1z68_A 628 GLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVH--FQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTN 704 (719)
T ss_dssp CCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHH
T ss_pred CCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCCCCcC--HHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHH
Confidence 111 345566788889889999998 89999999999999 999999999999999999999999999998 455678
Q ss_pred HHHHHHHHHHHHhhc
Q 002164 885 HVLWETDRWLQKYCV 899 (958)
Q Consensus 885 ~~~~~i~~fl~~~l~ 899 (958)
.+.+.+.+||.++|+
T Consensus 705 ~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 705 HLYTHMTHFLKQCFS 719 (719)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 889999999999873
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=474.18 Aligned_cols=575 Identities=16% Similarity=0.149 Sum_probs=415.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccccccc---------ceEEe--cCCeE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFD---------NFVWV--NNSTL 257 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~---------~~~ws--pDG~~ 257 (958)
..+..|+||+ ++++|+..+. ..++...||++ ..+|+.++++..+.. +. .+.|+ |||+.
T Consensus 24 ~~~~~~~~s~--~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 24 GRPACVGAVG--DEVWWVAPRP---AEAGRATLVRR-RADGAEESALPAPWN-----VRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp SCCEEEEEET--TEEEEEEEET---TTTTEEEEEEE-CTTSCEEESSCTTCC-----BCCCGGGTCCCCEEEECCSSSSC
T ss_pred CccceeEEcC--CeEEEEecCc---ccCCcEEEEEE-CCCCCcceeCCCCcc-----ccccccccCCccceeeeecCCCe
Confidence 4688899995 4788887532 23456788888 567888899876532 22 56687 99999
Q ss_pred -EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC----CeeeecCC--
Q 002164 258 -LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD----GTVKEIGP-- 330 (958)
Q Consensus 258 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~l~~-- 330 (958)
|+|+.. ...+||+++++ |+.++|+.
T Consensus 93 ~la~~~~------------------------------------------------~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 93 LLVFTHF------------------------------------------------GDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp EEEEEBT------------------------------------------------TTCCEEEECTTSTTCCCCEECSCCC
T ss_pred EEEEEEC------------------------------------------------CCCeEEEEcCCCCCCCCCEeccCCc
Confidence 888711 12469999986 77888876
Q ss_pred ---C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC------ceEEEec-cCCccccCccccccccc
Q 002164 331 ---P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IFVRELC-DLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 331 ---~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~------~~~~~l~-~~~~~~~~p~~~~~~~~ 399 (958)
. ..+..++|||||++|++++.+.... . ......+|++|++++ +..+.|+ ... .
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~--~-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------------~ 188 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGE--G-PSDVRRFLAAVPLDGSAAADRSAVRELSDDAH-------------R 188 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSS--S-TTCEEEEEEEEETTSTTTTCGGGSEESSCSCS-------------S
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCC--C-CCCceeEEEEEECCCCccccCCceeEEEecCC-------------C
Confidence 3 4567899999999999998642100 0 001124899999998 7777776 422 2
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCC-CC---CceEEEee-ccccCceeeecCCceEEEEE
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GE---GPEILHKL-DLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~---~~~~l~~~-~~~~~~~~~spDg~~l~~~~ 474 (958)
....+.|||||+.|++.....++.. .....||++++ + ++ +.+.++.. ...+..+.|||||+ |+|.+
T Consensus 189 ~~~~~~~SpDG~~la~~~~~~~~~~-----~~~~~i~~~d~---~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~ 259 (662)
T 3azo_A 189 FVTGPRLSPDGRQAVWLAWDHPRMP-----WEGTELKTARV---TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT 259 (662)
T ss_dssp EECCCEECTTSSEEEEEEECTTCCT-----TTCEEEEEEEE---CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred cccCceECCCCCEEEEEECCCCCCC-----CCCcEEEEEEE---CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence 2356889999999998643221100 12347999996 4 34 55666554 46677899999999 88887
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCC---CCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCC
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP---GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNI 551 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (958)
+.++ ..+||+++++++ +.+.++..... ..... +...+.|+|||+.++... . ..
T Consensus 260 ~~~~-~~~l~~~~~~~~--~~~~l~~~~~~-~~~p~w~~~~~~~~~~~~~~~~~~~~-------------------~-~~ 315 (662)
T 3azo_A 260 DRTG-WWNLHRVDPATG--AATQLCRREEE-FAGPLWTPGMRWFAPLANGLIAVVHG-------------------K-GA 315 (662)
T ss_dssp CTTS-SCEEEEECTTTC--CEEESSCCSSB-SSCCCCSTTCCSEEECTTSCEEEEEB-------------------S-SS
T ss_pred CCCC-CeEEEEEECCCC--ceeeccccccc-ccCccccccCceEeEeCCCEEEEEEE-------------------c-Cc
Confidence 6654 368999998764 33444432221 11100 001144556665433322 1 23
Q ss_pred CeEEEEECCCCceEEEecCCcccccceeEeecCCCccccc-cccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCC
Q 002164 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDL-YLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (958)
Q Consensus 552 ~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~ 630 (958)
.+||++|+++++.++|+..... +. .+ ++|++.+++...+...+..+|++++.+++.++|+..+..
T Consensus 316 ~~l~~~d~~~~~~~~l~~~~~~-----~~---------~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~ 381 (662)
T 3azo_A 316 AVLGILDPESGELVDAAGPWTE-----WA---------ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTD 381 (662)
T ss_dssp CEEEEEETTTTEEEECCSSCCE-----EE---------EEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCC
T ss_pred cEEEEEECCCCcEEEecCCCCe-----EE---------EEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcc
Confidence 4799999998888877654322 11 23 778899999999999999999999999999999876543
Q ss_pred -CCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCC--CCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHH
Q 002164 631 -YPQLASLQKELIKYQRKDGVQLSATLYLPPGYD--PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (958)
Q Consensus 631 -~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~--~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (958)
+........+.++++..+|..+++++++|++++ ....+++|+||++||++..... ..| ...++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~---------~~~----~~~~~~ 448 (662)
T 3azo_A 382 PVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP---------AVL----DLDVAY 448 (662)
T ss_dssp SSCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCC---------CSC----CHHHHH
T ss_pred cCCccccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCc---------ccc----hHHHHH
Confidence 233333457888999889999999999998754 0112358999999998643211 012 245678
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
|+++||+|+.+++++..|+|.++.. ..+....++|+.+++++|++++.+|++||+|+||||||+++++++.+ |++|
T Consensus 449 l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~ 527 (662)
T 3azo_A 449 FTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVY 527 (662)
T ss_dssp HHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCC
T ss_pred HHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCce
Confidence 8999999999998888888887542 23344678999999999999998999999999999999999999887 7999
Q ss_pred eEEEEeccCCCCCCC------CCC--cc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 785 CCGIARSGAYNRTLT------PFG--FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 785 ~a~v~~~~~~~~~~~------~~~--~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
+++|+.+|+.++... .+. +. ...+...+..+.|...+|+.++.++++|+|++||++|.+|| +.++++++
T Consensus 528 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~ 605 (662)
T 3azo_A 528 ACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCP--PEQCDRFL 605 (662)
T ss_dssp SEEEEESCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred EEEEecCCccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCC--HHHHHHHH
Confidence 999999998763210 000 00 00111224567788889999999999999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
++|+..|++++++++|+++|.+...++..++.+.+.+||.++|+..
T Consensus 606 ~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 651 (662)
T 3azo_A 606 EAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFGVE 651 (662)
T ss_dssp HHHTTSCCCEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998766777889999999999999754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-49 Score=468.75 Aligned_cols=538 Identities=16% Similarity=0.147 Sum_probs=397.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|||||++|||++. .++..+||.+ ++|+.++++...... +..++|||| ++++.. ....+.
T Consensus 23 ~~~~~~~~~DG~~la~~s~------~~g~~~lw~~--~~g~~~~lt~~~~~~----~~~~~~spd-~~l~~~-~~~~g~- 87 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGF------SEGSVNAYLY--DGGETVKLNREPINS----VLDPHYGVG-RVILVR-DVSKGA- 87 (582)
T ss_dssp CEEEEEEEETTTEEEEEEE------ETTEEEEEEE--ETTEEEECCSSCCSE----ECEECTTCS-EEEEEE-ECSTTS-
T ss_pred chheeecCCCCCeEEEEEc------cCCceeEEEE--cCCCcEeeecccccc----cccccCCCC-eEEEEe-ccCCCC-
Confidence 4778899999999999875 2356677775 689999998766322 668999999 655443 110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDGk~l~ 347 (958)
...+||.+++ +|....++........+|||||+.++
T Consensus 88 ------------------------------------------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 88 ------------------------------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp ------------------------------------------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEE
T ss_pred ------------------------------------------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEE
Confidence 2346999998 77666776654445679999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
+++... ..+.+||+++++.++++..+. ..+.|||||+.|++.....
T Consensus 126 ~~s~~~------------~~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~la~~~~~~------- 171 (582)
T 3o4h_A 126 FTGATE------------DRVALYALDGGGLRELARLPG---------------FGFVSDIRGDLIAGLGFFG------- 171 (582)
T ss_dssp EEEECS------------SCEEEEEEETTEEEEEEEESS---------------CEEEEEEETTEEEEEEEEE-------
T ss_pred EEecCC------------CCceEEEccCCcEEEeecCCC---------------ceEEECCCCCEEEEEEEcC-------
Confidence 887542 256699999988888775331 4788999999999863321
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcccc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 507 (958)
.....||++++ ++++.+.|+.....+..++|||||+.|+ .+..++ ..+||+++++++ +.. ++......+.
T Consensus 172 --~~~~~i~~~d~---~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~-~~~i~~~d~~~~--~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 172 --GGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAR-EARLVTVDPRDG--SVE-DLELPSKDFS 241 (582)
T ss_dssp --TTEEEEEEEET---TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSS-CEEEEEECTTTC--CEE-ECCCSCSHHH
T ss_pred --CCCeEEEEEcC---CCCCceEeecCCCccccceECCCCCEEE-EccCCC-eeEEEEEcCCCC--cEE-EccCCCcChh
Confidence 12246999995 7778888887777788999999999999 433332 368999999885 333 3333222222
Q ss_pred CCCCCCceE--------eccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 508 SDPGSPMMR--------RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 508 ~~~~~~~~~--------~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
. +. ||||| .+++..... ..+.+|++ |+..+.. .+ .+
T Consensus 242 ~------~~~~~~~~~~~spdg-~~~~~~~~~--------------------g~~~l~~~--g~~~~~~--~~-----~v 285 (582)
T 3o4h_A 242 S------YRPTAITWLGYLPDG-RLAVVARRE--------------------GRSAVFID--GERVEAP--QG-----NH 285 (582)
T ss_dssp H------HCCSEEEEEEECTTS-CEEEEEEET--------------------TEEEEEET--TEEECCC--SS-----EE
T ss_pred h------hhhccccceeEcCCC-cEEEEEEcC--------------------CcEEEEEE--CCeeccC--CC-----ce
Confidence 2 44 99999 666655321 14677777 5544311 11 11
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCC---CCCCcEEEEEEEeCCCeEEEEEE
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQ---LASLQKELIKYQRKDGVQLSATL 656 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~---~~~~~~~~~~~~~~dg~~l~~~l 656 (958)
. .++|+ ||+ +++...+...|+++|+++..+ +.++| .+.. ......+.+++++.+|.++++++
T Consensus 286 ~-------~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~~~~l-----~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 350 (582)
T 3o4h_A 286 G-------RVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-PLLEG-----GLPEDLRRSIAGSRLVWVESFDGSRVPTYV 350 (582)
T ss_dssp E-------EEEEE-TTE-EEEEEEETTEEEEEEEETTCC-EEECC-----CCCHHHHHTEEEEEEEEEECTTSCEEEEEE
T ss_pred E-------EEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-ceEEE-----ecCCccccccCcceEEEEECCCCCEEEEEE
Confidence 1 24678 664 567788888899999998755 55555 1222 44456789999999999999999
Q ss_pred EecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---h
Q 002164 657 YLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---D 733 (958)
Q Consensus 657 ~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~ 733 (958)
+.|+++++ ++|+||++||+++.... ..| ...++.|+++||+|+++++++..|+|.++.. .
T Consensus 351 ~~p~~~~~----~~p~vv~~HG~~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~ 413 (582)
T 3o4h_A 351 LESGRAPT----PGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIG 413 (582)
T ss_dssp EEETTSCS----SEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTT
T ss_pred EcCCCCCC----CCcEEEEECCCcccccc---------ccc----CHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhh
Confidence 99987533 48999999998643210 111 3457789999999999888888778877432 3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC----Ccc-cccc
Q 002164 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQ-NEDR 808 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~-~~~~ 808 (958)
.+....++|+.++++++.+++.+| +++|+|||+||++++.++.++|++|+++|+.+|+.++..... .+. ....
T Consensus 414 ~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (582)
T 3o4h_A 414 DPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ 491 (582)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHH
Confidence 445677899999999999998887 999999999999999999999999999999999876321000 000 0000
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002164 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (958)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~ 888 (958)
.+..+.+.+...+|+.++.++++|+|++||++|.+|| +.++++++++|+..|++++++++|+++|.+...++..++++
T Consensus 492 ~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 569 (582)
T 3o4h_A 492 LTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTP--LKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILL 569 (582)
T ss_dssp HTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHH
T ss_pred HcCcCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcC--HHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHH
Confidence 1114567788899999999999999999999999999 99999999999999999999999999999876777889999
Q ss_pred HHHHHHHHhhcc
Q 002164 889 ETDRWLQKYCVS 900 (958)
Q Consensus 889 ~i~~fl~~~l~~ 900 (958)
.+.+||+++|+.
T Consensus 570 ~i~~fl~~~l~~ 581 (582)
T 3o4h_A 570 PAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999863
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=468.21 Aligned_cols=584 Identities=12% Similarity=0.096 Sum_probs=406.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc--cccccccceEEecCCeEEEEEecCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+..| +|||++++|+.... +.....||+++..+++.+.|+..... ..+..+..++|||||++|+|.....+.
T Consensus 76 ~~~p--~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~- 148 (710)
T 2xdw_A 76 YSCH--FKKGKRYFYFYNTG----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS- 148 (710)
T ss_dssp ECCC--EEETTEEEEEEECS----SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC-
T ss_pred CCCC--EEECCEEEEEEEcC----CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC-
Confidence 4445 49999999987532 33355899999888877755432210 001125689999999999998321110
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
...+|+++++ +|+...++.. ..+..++|||||+.|
T Consensus 149 -------------------------------------------~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 149 -------------------------------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp -------------------------------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEE
T ss_pred -------------------------------------------ceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEE
Confidence 1237999999 8877665433 346789999999999
Q ss_pred EEEeecCCcc---ccccCCCCCceeEEEeccCceE--EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 347 LISSIHRPYS---FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 347 ~~~~~~~~~~---~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
+|++...+.. ..........+|++|++.++.. +.+...+.. ......+.|||||+.|++......
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~----------~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----------PKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC----------CeEEEEEEEcCCCCEEEEEEEccC
Confidence 9998654310 0001112345799999986542 222221110 012357899999999998643210
Q ss_pred CCCcccccccCCeEEEEeCCCCCC------C--CceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCC
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQG------E--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g------~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~ 493 (958)
.....||++++ ++ + ..+.|+...... ...|+|||+.|+|.++.+..+.+|+.++++++..
T Consensus 256 --------~~~~~l~~~d~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 256 --------DPVNRLWYCDL---QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp --------SSCCEEEEEEG---GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred --------CCccEEEEEEC---cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 11457999996 33 2 466676544333 3469999999999988766567899999987521
Q ss_pred -CcEEEeccCC-ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc-eEEEecC
Q 002164 494 -APRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS-KERIWES 570 (958)
Q Consensus 494 -~~~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~-~~~l~~~ 570 (958)
..+.++.... ..+.+ +.|++++ .+++.... ....+|+++|+.+|+ .+.|...
T Consensus 324 ~~~~~l~~~~~~~~~~~------~~~~~~~-~lv~~~~~------------------~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEW------VACVRSN-FLVLCYLH------------------DVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp GGCEEEECCCSSCEEEE------EEEETTT-EEEEEEEE------------------TTEEEEEEEETTTCCEEEEECCC
T ss_pred ccceeccCCCCCCeEEE------EEEEcCC-EEEEEEEE------------------CCEEEEEEEECCCCCEEEecCCC
Confidence 1234433322 12222 6677555 45554421 123469999996665 4555433
Q ss_pred CcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC--eeEeecCCCCCCCCCCCcEEEEEEEeCC
Q 002164 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK--SCQITDFPHPYPQLASLQKELIKYQRKD 648 (958)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~--~~~Lt~~~~~~~~~~~~~~~~~~~~~~d 648 (958)
.+. +. .+++++|++.+++..++...|..+|++++.+|+ .+.+........+...+..+.+++++.|
T Consensus 379 ~~~-----v~-------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d 446 (710)
T 2xdw_A 379 VGS-----VV-------GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD 446 (710)
T ss_dssp SSE-----EE-------EEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTT
T ss_pred Cce-----EE-------EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCC
Confidence 221 11 245788999999999999999999999999988 7777764422123345678899999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEG 727 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G 727 (958)
|.+|++++++|+++... ++.|+||++||++.....+ .| ......|++ +||+|++++++++.++|
T Consensus 447 g~~i~~~~~~p~~~~~~--~~~P~vl~~hGg~~~~~~~---------~~----~~~~~~l~~~~G~~v~~~d~rG~g~~g 511 (710)
T 2xdw_A 447 GTKIPMFIVHKKGIKLD--GSHPAFLYGYGGFNISITP---------NY----SVSRLIFVRHMGGVLAVANIRGGGEYG 511 (710)
T ss_dssp SCEEEEEEEEETTCCCS--SCSCEEEECCCCTTCCCCC---------CC----CHHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred CCEEEEEEEecCCCCCC--CCccEEEEEcCCCCCcCCC---------cc----cHHHHHHHHhCCcEEEEEccCCCCCCC
Confidence 99999999999986433 3589999999986432210 11 123456788 99999998888776666
Q ss_pred Ccccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC--
Q 002164 728 DEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-- 802 (958)
Q Consensus 728 ~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-- 802 (958)
..+.. .......+.|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++......
T Consensus 512 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 591 (710)
T 2xdw_A 512 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 591 (710)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCC
Confidence 54322 2344567899999999999999999999999999999999999999999999999999999875432110
Q ss_pred ---cccccch--hhhcHHHHHhcCcccccC-----CCCC-CEEEEeeCCCCCCCCChHHHHHHHHHHHhC-------CCc
Q 002164 803 ---FQNEDRT--LWEATSTYVEMSPFMSAN-----KLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GAL 864 (958)
Q Consensus 803 ---~~~~~~~--~~~~~~~~~~~sp~~~~~-----~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~ 864 (958)
+....+. ..+..+.+..++|+.++. +++. |+||+||++|.+|| +.++.+++++|+.. |.+
T Consensus 592 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 592 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHHHTTTSTTCCSC
T ss_pred ChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccC--hhHHHHHHHHHHhhhccccCCCcC
Confidence 0000001 112234566789999998 7886 99999999999999 99999999999987 899
Q ss_pred EEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhhcc
Q 002164 865 CRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++++++++||++... ....+....+++||.++|+.
T Consensus 670 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 670 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998654 34567888999999999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=464.33 Aligned_cols=579 Identities=15% Similarity=0.095 Sum_probs=404.3
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc--cccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
..+|||++|+|+.... +.....||+++..+++.++|+..... .....+..++|||||++|+|+....+.
T Consensus 74 ~p~~dG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~----- 144 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHK----DKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA----- 144 (695)
T ss_dssp CCEEETTEEEEEEECT----TCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC-----
T ss_pred CCEEECCEEEEEEEcC----CCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC-----
Confidence 3459999999988532 33467899999988888888753320 001126689999999999998322111
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee---ecCCCccccccccCCCCcEEEE
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
...+|+++++ +|+.. .+.. .....++|||||+.|+|
T Consensus 145 ---------------------------------------~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 145 ---------------------------------------DEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp ---------------------------------------SCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEEE
T ss_pred ---------------------------------------ceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEEE
Confidence 1357999999 77654 1211 22368999999999999
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceE--EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
++.+.+............+|++|++.++.. +.+...+.. ......+.|||||+.|++.....
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~------ 248 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD----------PTTFLQSDLSRDGKYLFVYILRG------ 248 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC----------TTCEEEEEECTTSCCEEEEEEET------
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC----------CEEEEEEEECCCCCEEEEEEeCC------
Confidence 986542100000111234799999986542 333332211 02335789999999999863321
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC-cEEEeccC-Cc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA-PRILFDRS-SE 504 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~ 504 (958)
.....||+++. .+++.+.|+........+.| +||+ |++.++.+..+.+|+.++++++... .+.++... ..
T Consensus 249 ---~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 320 (695)
T 2bkl_A 249 ---WSENDVYWKRP---GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA 320 (695)
T ss_dssp ---TTEEEEEEECT---TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC
T ss_pred ---CCceEEEEEcC---CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC
Confidence 02447888874 55677888766555556666 7888 8888776544578999999875211 13343322 11
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecC
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (958)
.+.+ ++|+ ++ .|++.... ....+|++++++++..+.+...... ..
T Consensus 321 ~l~~------~~~~-~~-~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~-----~v---- 365 (695)
T 2bkl_A 321 SLLS------VSIV-GG-HLSLEYLK------------------DATSEVRVATLKGKPVRTVQLPGVG-----AA---- 365 (695)
T ss_dssp EEEE------EEEE-TT-EEEEEEEE------------------TTEEEEEEEETTCCEEEECCCSSSS-----EE----
T ss_pred eEEE------EEEE-CC-EEEEEEEE------------------CCEEEEEEEeCCCCeeEEecCCCCe-----EE----
Confidence 1111 4565 44 45544421 1234799999876555555432111 01
Q ss_pred CCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCC
Q 002164 585 DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDP 664 (958)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~ 664 (958)
..+++++|++.+++..++...|..+|++++.+++.+.|+..+.. .....+..+.+++++.||.++++++++|++++.
T Consensus 366 --~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~ 442 (695)
T 2bkl_A 366 --SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKR 442 (695)
T ss_dssp --CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCCC
T ss_pred --EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCCC
Confidence 12467889999999999999999999999999998888876543 223446788999999999999999999998643
Q ss_pred CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHH
Q 002164 665 SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVA 741 (958)
Q Consensus 665 ~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~ 741 (958)
. ++.|+||++|||+...... .|. .....|+++||+|+.+++++..++|..+.. .......++
T Consensus 443 ~--~~~p~vl~~hGg~~~~~~~---------~~~----~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~ 507 (695)
T 2bkl_A 443 D--GNAPTLLYGYGGFNVNMEA---------NFR----SSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507 (695)
T ss_dssp S--SCCCEEEECCCCTTCCCCC---------CCC----GGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred C--CCccEEEEECCCCccccCC---------CcC----HHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHH
Confidence 3 3589999999986443211 121 123468899999999888887777765322 234567789
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-C----cccccchh--hhcH
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G----FQNEDRTL--WEAT 814 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~----~~~~~~~~--~~~~ 814 (958)
|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..... . +....+.+ .+..
T Consensus 508 D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~ 587 (695)
T 2bkl_A 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDF 587 (695)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHH
T ss_pred HHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999987543210 0 00000111 0122
Q ss_pred HHHHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCccCCC-cccHHHHHH
Q 002164 815 STYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAA-RESIMHVLW 888 (958)
Q Consensus 815 ~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~p~~~H~~~~-~~~~~~~~~ 888 (958)
+.+..++|+.++.+++ +|+||+||++|.+|| +.++.+++++|+. .|.+++++++|++||++.. .....+...
T Consensus 588 ~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 665 (695)
T 2bkl_A 588 KTLHAYSPYHHVRPDVRYPALLMMAADHDDRVD--PMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSV 665 (695)
T ss_dssp HHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSC--THHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHHH
T ss_pred HHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHHH
Confidence 4456789999999876 699999999999999 9999999999998 6889999999999999854 344667788
Q ss_pred HHHHHHHHhhccC
Q 002164 889 ETDRWLQKYCVSN 901 (958)
Q Consensus 889 ~i~~fl~~~l~~~ 901 (958)
.+++||.++|+..
T Consensus 666 ~~~~fl~~~l~~~ 678 (695)
T 2bkl_A 666 DLYSFLFQVLDVQ 678 (695)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCC
Confidence 8999999998653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=455.06 Aligned_cols=576 Identities=13% Similarity=0.093 Sum_probs=400.3
Q ss_pred ecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC---CccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 196 WSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP---DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 196 wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~---~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
.+++|.+++|..... .....-+|+...++++.. |.... ... ...+..++|||||++|+|+....+.
T Consensus 84 p~~~g~~~y~~~~~~----~~~~~~~~r~~~~~~~~v-llD~n~la~~~-~~~l~~~~~SpDg~~lAy~~~~~G~----- 152 (693)
T 3iuj_A 84 PFREGRYHYFFKNDG----LQNQNVLWRQQEGKPAEV-FLDPNTLSPDG-TTALDQLSFSRDGRILAYSLSLAGS----- 152 (693)
T ss_dssp CEEETTEEEEEEECS----SCSSCEEEEECTTSCCEE-EECGGGGSTTS-CCEEEEEEECTTSSEEEEEEECSSC-----
T ss_pred CEEECCEEEEEEEcC----CCceeEEEEeCCCCCcEE-EEehhhccCCC-cEEEEEEEECCCCCEEEEEEecCCC-----
Confidence 356899999876422 333446777665554433 32211 111 1126688999999999998322111
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCc-cccccccCCCCcEEEEEe
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-VYTSLDPSPDEKYILISS 350 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~-~~~~~~~SpDGk~l~~~~ 350 (958)
...+|+++|+ +|+........ ....++|| ||+.|+|++
T Consensus 153 ---------------------------------------~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 153 ---------------------------------------DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp ---------------------------------------CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEE
T ss_pred ---------------------------------------ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEE
Confidence 2356999999 88765543322 25789999 999999998
Q ss_pred ecCCccccccCCCCCceeEEEeccCce--EEEeccCCc-cccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPL-AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
.+.+............+|++|++.+.. .+.+...+. .. ....++.|||||+.|++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----------~~~~~~~~SpDg~~l~~~~~~~------- 255 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----------HRYVGATVTEDDRFLLISAANS------- 255 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC----------CSEEEEEECTTSCEEEEEEESS-------
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC----------eEEEEEEEcCCCCEEEEEEccC-------
Confidence 664311111111234589999987543 234443321 10 1234688999999998863321
Q ss_pred ccccCCeEEEEeCCCCCCC--CceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC-cEEEeccCCc
Q 002164 428 EVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA-PRILFDRSSE 504 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 504 (958)
.....||++++ +++ +.+.|+........+ |+++|++|+|.++.+..+.+|+.++++++... .+.+......
T Consensus 256 --~~~~~i~~~d~---~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 256 --TSGNRLYVKDL---SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp --SSCCEEEEEET---TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred --CCCcEEEEEEC---CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 12358999996 333 566776544333333 89999999999887765689999999885321 1333322221
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecC
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (958)
. +.|+++|++|++..... ...+|+++|++++..+.+.-.... ...
T Consensus 330 ~---------~~~s~~g~~lv~~~~~~------------------g~~~l~~~d~~g~~~~~l~~p~~~-----~~~--- 374 (693)
T 3iuj_A 330 V---------LTVHSGSGYLFAEYMVD------------------ATARVEQFDYEGKRVREVALPGLG-----SVS--- 374 (693)
T ss_dssp C---------EEEEEETTEEEEEEEET------------------TEEEEEEECTTSCEEEEECCSSSS-----EEE---
T ss_pred E---------EEEEEECCEEEEEEEEC------------------CeeEEEEEECCCCeeEEeecCCCc-----eEE---
Confidence 1 36899999999887431 234799999998777766543321 111
Q ss_pred CCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCC
Q 002164 585 DQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDP 664 (958)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~ 664 (958)
.+++++|++.+++..++...|..+|.+++.+++.++|+..+..+ ....+..+.+++++.||.+|++++++|++++.
T Consensus 375 ---~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~~ 450 (693)
T 3iuj_A 375 ---GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAPF-KPEDYVSEQRFYQSKDGTRVPLIISYRKGLKL 450 (693)
T ss_dssp ---ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSSC-CGGGEEEEEEEEECTTSCEEEEEEEEESSCCC
T ss_pred ---eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCCc-ChhhCeeEEEEEecCCCcEEEEEEEecCCCCC
Confidence 23567899999999999999999999999999999998766433 23446789999999999999999999997643
Q ss_pred CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHH
Q 002164 665 SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVA 741 (958)
Q Consensus 665 ~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~ 741 (958)
. ++.|+||++|||+..... ..| ....+.|+++||+|+.+++++..++|..+.. .......++
T Consensus 451 ~--~~~P~ll~~hGg~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 515 (693)
T 3iuj_A 451 D--GSNPTILYGYGGFDVSLT---------PSF----SVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFD 515 (693)
T ss_dssp S--SCCCEEEECCCCTTCCCC---------CCC----CHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred C--CCccEEEEECCCCCcCCC---------Ccc----CHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHH
Confidence 3 358999999998643211 112 1335688999999999999888777765432 234456789
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-C----cccccchhhh--c-
Q 002164 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G----FQNEDRTLWE--A- 813 (958)
Q Consensus 742 D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~----~~~~~~~~~~--~- 813 (958)
|+.++++||++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..... . +....+.+.. .
T Consensus 516 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 595 (693)
T 3iuj_A 516 DFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAM 595 (693)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHH
T ss_pred HHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHH
Confidence 999999999999999999999999999999999999999999999999999988543211 0 0000011111 1
Q ss_pred HHHHHhcCcccccCC-CCCC-EEEEeeCCCCCCCCChHHHHHHHHHHHhC---CCcEEEEEeCCCCccCCCc-ccHHHHH
Q 002164 814 TSTYVEMSPFMSANK-LKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAAR-ESIMHVL 887 (958)
Q Consensus 814 ~~~~~~~sp~~~~~~-~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~---g~~~~~~~~p~~~H~~~~~-~~~~~~~ 887 (958)
.+.+..++|+.++.+ ++.| +||+||++|.+|| +.++.+++++|+.. |+++++++++++||++... ....+..
T Consensus 596 ~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 673 (693)
T 3iuj_A 596 FDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVV--PAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQS 673 (693)
T ss_dssp HHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSC--THHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHH
T ss_pred HHHHHhcCHHHhhcccCCCCceeEEecCCCCCCC--hhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHH
Confidence 234667899999999 8987 9999999999999 99999999999987 5899999999999998653 5567788
Q ss_pred HHHHHHHHHhhccC
Q 002164 888 WETDRWLQKYCVSN 901 (958)
Q Consensus 888 ~~i~~fl~~~l~~~ 901 (958)
..+.+||.++|+..
T Consensus 674 ~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 674 ADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCC
Confidence 89999999999754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=454.96 Aligned_cols=580 Identities=14% Similarity=0.092 Sum_probs=392.7
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcC---CCceeeccCCCCc--cccccccceEEecCCeEEEEEecCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD---TGKARPLFQSPDI--YLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~---~g~~~~lt~~~~~--~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
..+|||++++|+.... +.....||+++.. +++.+.|+..... .....+..++|||||++|+|.....+.
T Consensus 113 ~p~pdG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~-- 186 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSG----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS-- 186 (741)
T ss_dssp CCEEETTEEEEEEECS----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC--
T ss_pred CCEEECCEEEEEEEcC----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC--
Confidence 3459999999988532 3336789999987 7777775432210 001125689999999999998321100
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
...+|+++++ +|+....... ..+..++|||| +.|+
T Consensus 187 ------------------------------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 187 ------------------------------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALL 223 (741)
T ss_dssp ------------------------------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEE
T ss_pred ------------------------------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEE
Confidence 1256999999 8876554322 33468999999 9999
Q ss_pred EEeecCCcc-ccccCCCCCceeEEEeccCceE--EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 348 ISSIHRPYS-FIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|++...+.. ..........+|++|++.++.. +.+...+.. ......+.|||||+.|++......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~~--- 290 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL----------PKRGHGASVSSDGRWVVITSSEGT--- 290 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECTT---
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC----------CeEEEEEEECCCCCEEEEEEEccC---
Confidence 998654310 0001112345799999875432 233222111 012457899999999998643210
Q ss_pred cccccccCCeEEEEeCCCCCCC--C-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGE--G-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~--~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
.....||++++ +++ + .+.|.........+ ++|||+.|++.++.+..+.+||+++++++....+.++..
T Consensus 291 -----~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 291 -----DPVNTVHVARV---TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp -----CSCCEEEEEEE---ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred -----CCcceEEEEEC---CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 13457999996 554 5 67776544333334 569999999998876656889999988742122333322
Q ss_pred CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~ 581 (958)
....+.+ ++|+ +..|++.... ....+|++++++++..+.+...... .+.
T Consensus 362 ~~~~l~~------~~~~--~~~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~----~v~- 410 (741)
T 1yr2_A 362 SKDNLES------VGIA--GNRLFASYIH------------------DAKSQVLAFDLDGKPAGAVSLPGIG----SAS- 410 (741)
T ss_dssp CSSEEEE------EEEE--BTEEEEEEEE------------------TTEEEEEEEETTSCEEEECBCSSSC----EEE-
T ss_pred CCCeEEE------EEEE--CCEEEEEEEE------------------CCEEEEEEEeCCCCceeeccCCCCe----EEE-
Confidence 2211111 3444 4456555422 1234799999876656666532211 111
Q ss_pred ecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCC
Q 002164 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPG 661 (958)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~ 661 (958)
.+++++|++.+++..++...|..+|++++.+++.+.|+.... ..+...+..+.+++++.||.+++++++.|++
T Consensus 411 ------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~~-~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~ 483 (741)
T 1yr2_A 411 ------GLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVHL-TFDPADFRVEQVFYPSKDGTKVPMFIVRRKD 483 (741)
T ss_dssp ------EEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCCC-SSCGGGEEEEEEEEECTTSCEEEEEEEEETT
T ss_pred ------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCC-CCChhHCEEEEEEEEcCCCCEEEEEEEecCC
Confidence 246788999999999999999999999999998777776322 1233456788999999999999999999987
Q ss_pred CCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHH
Q 002164 662 YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQ 738 (958)
Q Consensus 662 ~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~ 738 (958)
+ .++.|+||++||++.....+ .| ......|+++||+|+.+++++..++|..+.. ......
T Consensus 484 ~----~~~~p~vl~~hGg~~~~~~~---------~~----~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~ 546 (741)
T 1yr2_A 484 A----KGPLPTLLYGYGGFNVALTP---------WF----SAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQN 546 (741)
T ss_dssp C----CSCCCEEEECCCCTTCCCCC---------CC----CHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHH
T ss_pred C----CCCCcEEEEECCCCCccCCC---------Cc----CHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCC
Confidence 5 23589999999986432210 11 1335578899999999888877766654322 223356
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-C----cccccchhh--
Q 002164 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G----FQNEDRTLW-- 811 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~----~~~~~~~~~-- 811 (958)
.++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..... . +....+.+.
T Consensus 547 ~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~ 626 (741)
T 1yr2_A 547 VFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKE 626 (741)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTSH
T ss_pred cHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCCH
Confidence 789999999999999999999999999999999999999999999999999999987543110 0 000001111
Q ss_pred hcHHHHHhcCcccccCC-CCC-CEEEEeeCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCccCCCc-ccHHH
Q 002164 812 EATSTYVEMSPFMSANK-LKK-PILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGYAAR-ESIMH 885 (958)
Q Consensus 812 ~~~~~~~~~sp~~~~~~-~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~p~~~H~~~~~-~~~~~ 885 (958)
+..+.+..++|+.++.+ +++ |+||+||++|.+|| +.++.+++++|+. .|.++++++++++||++... ....+
T Consensus 627 ~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~~ 704 (741)
T 1yr2_A 627 ADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVV--PGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIE 704 (741)
T ss_dssp HHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSC--THHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHHH
T ss_pred HHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCC--hhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHHH
Confidence 12344577899999997 885 99999999999999 9999999999999 88999999999999997543 33467
Q ss_pred HHHHHHHHHHHhhccCC
Q 002164 886 VLWETDRWLQKYCVSNT 902 (958)
Q Consensus 886 ~~~~i~~fl~~~l~~~~ 902 (958)
....+++||.++++...
T Consensus 705 ~~~~~~~fl~~~l~~~~ 721 (741)
T 1yr2_A 705 ETADVQAFLAHFTGLTP 721 (741)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 88899999999996543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=429.99 Aligned_cols=574 Identities=13% Similarity=0.054 Sum_probs=389.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc---CCC--ceeeccCCCC---ccccccccceEEe-cCCeEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV---DTG--KARPLFQSPD---IYLNAIFDNFVWV-NNSTLLVC 260 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~---~~g--~~~~lt~~~~---~~~~~~~~~~~ws-pDG~~l~~ 260 (958)
..+.|. ++|++++|++... +.....+|+.+. .++ ..+.+..... ..-...+..++|| |||++|+|
T Consensus 118 ~~~~p~--~~g~~~yy~~~~~----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy 191 (751)
T 2xe4_A 118 DMSAPY--VYGKYRYYTREVK----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAF 191 (751)
T ss_dssp EECCCE--EETTEEEEEEECT----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEE
T ss_pred cCCCCe--EECCEEEEEEECC----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEE
Confidence 445554 6899999987522 333456888886 554 4444432210 0000014579999 99999999
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC--ccccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTS 336 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~ 336 (958)
+....+. ...+||++++ +| +. +... .....
T Consensus 192 ~~~~~G~--------------------------------------------~~~~l~v~dl~~g~~~--l~~~~~~~~~~ 225 (751)
T 2xe4_A 192 SVDMSGN--------------------------------------------EVYTIEFKRISDPSQT--IADKVSGTNGE 225 (751)
T ss_dssp EEESSSS--------------------------------------------SCEEEEEEETTCTTCC--CCCCEEEECSC
T ss_pred EEeCCCC--------------------------------------------ceEEEEEEECCCCCEe--CCccccCceee
Confidence 8321110 1246999999 77 52 2222 33568
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE--EEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
+.|||||+.|+|++.+.. ....+|+++++.++.. +.+...+.. .....+.|||||+.|+
T Consensus 226 ~~WspDg~~l~y~~~d~~--------~~~~~v~~~~lgt~~~~~~lv~~~~~~-----------~~~~~~~~SpDg~~l~ 286 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDET--------LRENKVWRHVMGKLQSEDVCLYEEHNP-----------LFSAFMYKAADTNTLC 286 (751)
T ss_dssp CEECSSTTEEEEEEECTT--------CCEEEEEEEETTSCGGGCEEEEECCCT-----------TCEEEEEECTTSSEEE
T ss_pred EEEecCCCEEEEEEECCC--------CCCCEEEEEECCCCchhcEEEEecCCC-----------ceEEEEEECCCCCEEE
Confidence 999999999999985421 1224799999876532 233221100 1124678999999999
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCC--Cc--eEEEeeccccCceeeecC---CceEEEEEecc-ccceEEEEE
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GP--EILHKLDLRYGGISWCDD---SLALVYESWYK-TRRTRTWVI 486 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~--~~l~~~~~~~~~~~~spD---g~~l~~~~~~~-~~~~~l~~~ 486 (958)
+.... .....||++++ +++ +. +.+.... ..+.|+++ |+.|+|.++.+ ..+.+||.+
T Consensus 287 ~~~~~----------~~~~~l~~~d~---~~~~~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~ 350 (751)
T 2xe4_A 287 IGSQS----------PETAEVHLLDL---RKGNAHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIA 350 (751)
T ss_dssp EEEEC----------SSCEEEEEEES---SSCTTCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEEE
T ss_pred EEecC----------CCCceEEEEEC---CCCCCCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEE
Confidence 97432 23457999996 433 34 4454322 34567777 99999998876 455799999
Q ss_pred cCCCCCCCcE-EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC------
Q 002164 487 SPGSKDVAPR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI------ 559 (958)
Q Consensus 487 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl------ 559 (958)
+++++..-.. ++.......+ ..+++++++|++.... ....+|+++|+
T Consensus 351 d~~~~~~~~~~li~~~~~~~l--------~~~~~~~~~lv~~~~~------------------~g~~~l~~~dl~~~~~~ 404 (751)
T 2xe4_A 351 PRGQPSDWSHVLVDHSEDVFM--------ESIAVRSNYLVVAGRR------------------AGLTRIWTMMADSQDGV 404 (751)
T ss_dssp ETTSTTCCCCEEECCCSSEEE--------EEEEECSSEEEEEEEE------------------TTEEEEEEEECCTTTSC
T ss_pred cCCCcccceeeEECCCCCcEE--------EEEEEECCEEEEEEEe------------------CCEEEEEEEeccccccc
Confidence 9875311122 2322111011 2356667788777642 12347999996
Q ss_pred -CCCc-eEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCC-CCCCCC
Q 002164 560 -NTGS-KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP-YPQLAS 636 (958)
Q Consensus 560 -~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~-~~~~~~ 636 (958)
++++ .++|.-.... ....+ + ....+++|++.+++..++...|+.+|.+++.+++.++|++.+.. ......
T Consensus 405 ~~~g~~~~~l~l~~~~----~~~~~-~--~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~ 477 (751)
T 2xe4_A 405 FKAGTGLREVVMEEPI----FTVHL-V--ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAAN 477 (751)
T ss_dssp CCTTTCCEECCCCCSS----CEEEE-C--GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGG
T ss_pred ccCCccceEECCCCce----eEEEe-c--cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccc
Confidence 5666 6666432211 01111 0 00001568889999999999999999999999998999876532 122234
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+..+.+++++.||.+|++++++|+++++. +++|+||++|||+...... .|. ...+.|+++||+|+
T Consensus 478 ~~~~~~~~~s~dG~~i~~~l~~p~~~~~~--~~~P~vl~~HGg~~~~~~~---------~~~----~~~~~l~~~G~~v~ 542 (751)
T 2xe4_A 478 YKVERRFATAPDQTKIPLSVVYHKDLDMS--QPQPCMLYGYGSYGLSMDP---------QFS----IQHLPYCDRGMIFA 542 (751)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEETTSCTT--SCCCEEEECCCCTTCCCCC---------CCC----GGGHHHHTTTCEEE
T ss_pred eEEEEEEEECCCCcEEEEEEEcCCCCCCC--CCccEEEEECCCCCcCCCC---------cch----HHHHHHHhCCcEEE
Confidence 56889999999999999999999886433 3589999999986432211 121 12457889999999
Q ss_pred EcCCCCCCCCCCcccc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 717 GGPTTPIIGEGDEEAN----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~----~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
.++++++.++|..+.. .......++|+.++++||++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|
T Consensus 543 ~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~ 622 (751)
T 2xe4_A 543 IAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVP 622 (751)
T ss_dssp EECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESC
T ss_pred EEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCC
Confidence 9999888888765432 233457899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC------CCC--cccccchhhhcH---HHHHhcCcccccCCCCCC-EEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 793 AYNRTLT------PFG--FQNEDRTLWEAT---STYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 793 ~~~~~~~------~~~--~~~~~~~~~~~~---~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
+.++... ++. .....+.+ .++ +.+..++|+.++.++++| +||+||++|.+|| +.++.+++++|+.
T Consensus 623 ~~d~~~~~~~~~~~~~~~~~~~~g~p-~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp--~~~~~~~~~~L~~ 699 (751)
T 2xe4_A 623 FVDVMTTMCDPSIPLTTGEWEEWGNP-NEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVA--YWEPAKWVSKLRE 699 (751)
T ss_dssp CCCHHHHHTCTTSTTHHHHTTTTCCT-TSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSC--THHHHHHHHHHHH
T ss_pred cchHHhhhcccCcccchhhHHHcCCC-CCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCC--HHHHHHHHHHHHh
Confidence 8773211 100 00011111 122 345678999999999997 9999999999999 9999999999998
Q ss_pred CC---CcEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHhhccC
Q 002164 861 HG---ALCRLVILPFESHGYAARE-SIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 861 ~g---~~~~~~~~p~~~H~~~~~~-~~~~~~~~i~~fl~~~l~~~ 901 (958)
.+ .++.+.++|+++|++.... +.......+++||.++|+..
T Consensus 700 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~ 744 (751)
T 2xe4_A 700 CKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKST 744 (751)
T ss_dssp HCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCC
Confidence 84 4667777899999986432 44566778999999998643
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=348.58 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=248.3
Q ss_pred CeEEEEECCCCc--eEE-EecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCC
Q 002164 552 PFLDLFDINTGS--KER-IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFP 628 (958)
Q Consensus 552 ~~L~~~dl~~g~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~ 628 (958)
.+|+++|+++|+ .+. +.-.... .+. ..+.+++++.+++..++...|+.+|++++. ++.++|+..+
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~----~~~-------~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQN----AIF-------GMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTT----CEE-------EEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCS
T ss_pred EEEEEEECCCCceEEEeccCCCCCe----EEE-------EEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCC
Confidence 468899987764 344 3222111 011 123457888999999999999999999988 8888898876
Q ss_pred CCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH
Q 002164 629 HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (958)
..+. ...+..+.+++++.||.+|++++++|+++++. +++|+||++|||+...... .| .....+.|
T Consensus 440 ~~~~-~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~--~~~P~vl~~HGG~~~~~~~---------~~---~~~~~q~l 504 (711)
T 4hvt_A 440 YSFD-SENYVLEQKEATSFDGVKIPYFLVYKKGIKFD--GKNPTLLEAYGGFQVINAP---------YF---SRIKNEVW 504 (711)
T ss_dssp SCCC-GGGEEEEEEEEECTTSCEEEEEEEEETTCCCS--SCCCEEEECCCCTTCCCCC---------CC---CHHHHHHT
T ss_pred cccC-cccCeeEEEEEECCCCeEEEEEEEecCCCCCC--CCccEEEEECCCCCCCCCC---------cc---cHHHHHHH
Confidence 5433 23347889999999999999999999986543 3599999999987543211 11 11223578
Q ss_pred HHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 002164 709 LARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (958)
+++||+|+.++++++.|+|..+. ........++|+.++++||++++++|++||+|+|+|+||+++++++.++|++|+
T Consensus 505 a~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~ 584 (711)
T 4hvt_A 505 VKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFG 584 (711)
T ss_dssp GGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCS
T ss_pred HHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceE
Confidence 99999999999998888887643 344567889999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCC-----cccccchhh--hcHHHHHhcCcccccCCCCC--CEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 786 CGIARSGAYNRTLTPFG-----FQNEDRTLW--EATSTYVEMSPFMSANKLKK--PILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~sp~~~~~~~~~--P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
|+|+.+|++++...... +....+.++ +..+.+..++|+.++.++++ |+||+||++|.+|| +.++.++++
T Consensus 585 a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp--~~~s~~~~~ 662 (711)
T 4hvt_A 585 AVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVH--PWHGRIFEY 662 (711)
T ss_dssp EEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSC--THHHHHHHH
T ss_pred EEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCC--hHHHHHHHH
Confidence 99999999886432110 000111111 23355778899999999987 99999999999999 999999999
Q ss_pred HH-HhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhhcc
Q 002164 857 AL-KGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 857 ~l-~~~g~~~~~~~~p~~~H~~~~~-~~~~~~~~~i~~fl~~~l~~ 900 (958)
+| +..|++++++++|+++|++... .........+.+||.++|+.
T Consensus 663 aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~ 708 (711)
T 4hvt_A 663 VLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708 (711)
T ss_dssp HHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCC
Confidence 99 9999999999999999998543 34556777899999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=234.10 Aligned_cols=344 Identities=13% Similarity=0.098 Sum_probs=216.2
Q ss_pred CceeeeccCCCC---CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec
Q 002164 177 GQEIEIQGFPDG---AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 177 ~~~~~lt~~~~~---~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
+..++|+..+.. .....|+|||||++|+|... .++..+||++++++|+.++++...... +..+.|||
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~------~~g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~sp 90 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGA------FDGPWNYYLLDLNTQVATQLTEGRGDN----TFGGFLSP 90 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTCEEEECCCSSCBC----SSSCEECT
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEc------CCCCceEEEEeCCCCceEEeeeCCCCC----ccceEEcC
Confidence 566777653311 12234999999999999874 345779999999999999998766542 33678999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~- 331 (958)
||+.|+|.. ....||++++ +|+.+.+...
T Consensus 91 dg~~l~~~~-------------------------------------------------~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 91 DDDALFYVK-------------------------------------------------DGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp TSSEEEEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEe-------------------------------------------------CCCeEEEEECCCCcceeeeech
Confidence 999999882 1236999999 8876665543
Q ss_pred -ccc--cccccCCCCcEEEEEeecCCccccc---------cCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 332 -AVY--TSLDPSPDEKYILISSIHRPYSFIV---------PCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 332 -~~~--~~~~~SpDGk~l~~~~~~~~~~~~~---------~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
... ..+.++|||+.|+............ ........|+++|+++++.+.++... .
T Consensus 122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-------------~ 188 (388)
T 3pe7_A 122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-------------Q 188 (388)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-------------S
T ss_pred hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-------------c
Confidence 222 2234599999998654321100000 00112358999999988888776532 2
Q ss_pred Ccceeeeec-CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCceEEEEEec
Q 002164 400 GMRSINWRS-DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 400 ~~~~~~~sp-DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~ 476 (958)
....+.||| ||+.|+|..+... ......||+++. +++..+.++... ..+..+.|||||+.|+|.+..
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~-------~~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPH-------DLVDARMWLINE---DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCT-------TTSSCSEEEEET---TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred cccccEECCCCCCEEEEEEecCC-------CCCcceEEEEeC---CCCceEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 245789999 9999999643110 012447999985 777777776544 245678999999999998875
Q ss_pred ccc-ceEEEEEcCCCCCCCcEEEeccCCcc-ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeE
Q 002164 477 KTR-RTRTWVISPGSKDVAPRILFDRSSED-VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (958)
Q Consensus 477 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (958)
.+. ...||+++++++ +.+.+....... ...... ...|||||++|++..... .+. .......|
T Consensus 259 ~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~--~~~~spdg~~l~~~~~~~-----------~~~-~~~~~~~i 322 (388)
T 3pe7_A 259 KGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYD--GSLMVGDGSDAPVDVQDD-----------SGY-KIENDPFL 322 (388)
T ss_dssp TTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTT--SSEEEEEECCC------------------------CCCCEE
T ss_pred CCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCC--CCeEccCCCcceeEeeec-----------ccc-ccCCCCEE
Confidence 543 246999999986 333443322100 000000 146999999999875310 000 01123479
Q ss_pred EEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 555 ~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
++||+++++.++|+..... +......-......++|||||+.+++..... ...+||+++++++.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTS-WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPESV 386 (388)
T ss_dssp EEEETTTTEEEEEEECCCC-CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGGG
T ss_pred EEEeccCCceEEeccccCc-ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChhc
Confidence 9999999999888876531 0000000000123468999999999887654 45679999987654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=233.82 Aligned_cols=329 Identities=13% Similarity=0.097 Sum_probs=206.4
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
...++|||||++|+|.+.. ++ . .+||++++.+ +..++++... +..
T Consensus 38 ~~~~~~SpDg~~l~~~~~~----------------------~g--~------~~l~~~d~~~----g~~~~lt~~~-~~~ 82 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFGGAF----------------------DG--P------WNYYLLDLNT----QVATQLTEGR-GDN 82 (388)
T ss_dssp TTSCCBCTTSCEEEEEECT----------------------TS--S------CEEEEEETTT----CEEEECCCSS-CBC
T ss_pred hcCccCCCCCCEEEEEEcC----------------------CC--C------ceEEEEeCCC----CceEEeeeCC-CCC
Confidence 3458999999999999863 11 1 2699999855 6677776422 123
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE--ecCCeEEEEEecCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~~~~~~~ 268 (958)
...+.|||||++|+|... ...||++++++|+.++++..+... .....| +|||+.|+.........
T Consensus 83 ~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKD---------GRNLMRVDLATLEENVVYQVPAEW----VGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp SSSCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ccceEEcCCCCEEEEEeC---------CCeEEEEECCCCcceeeeechhhc----ccccceeECCCCCeeccccccCccc
Confidence 447899999999999763 458999999999998887665532 223334 79999888652110000
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCC-CCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DGk~ 345 (958)
.....+... ..........+|+++++ +|+.+.++.. ..+..+.||| ||++
T Consensus 150 ---------------------~~~~~~~~~------~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 150 ---------------------VPLTDWKKF------HEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp ---------------------CCCCSHHHH------HHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred ---------------------ccccccchh------hhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 000000000 00000113468999999 8888888765 5678899999 9999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+|...... .....+|++++++++..+.++..... .....+.|||||+.|+|......
T Consensus 203 l~~~~~~~~-------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~---- 260 (388)
T 3pe7_A 203 VAFCHEGPH-------DLVDARMWLINEDGTNMRKVKTHAEG-----------ESCTHEFWVPDGSALVYVSYLKG---- 260 (388)
T ss_dssp EEEEECSCT-------TTSSCSEEEEETTSCCCEESCCCCTT-----------EEEEEEEECTTSSCEEEEEEETT----
T ss_pred EEEEEecCC-------CCCcceEEEEeCCCCceEEeeeCCCC-----------cccccceECCCCCEEEEEecCCC----
Confidence 999985321 01134899999998887777653210 11346789999999998644311
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeecc------ccCceeeecCCceEEEEEecc-----ccceEEEEEcCCCCCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVISPGSKDVA 494 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~-----~~~~~l~~~~~~~~~~~ 494 (958)
.....||++++ ++++.+.++.... ....+.|||||+.|++..... .....||+++++++ +
T Consensus 261 ----~~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~ 331 (388)
T 3pe7_A 261 ----SPDRFIYSADP---ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG--T 331 (388)
T ss_dssp ----CCCEEEEEECT---TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT--E
T ss_pred ----CCcceEEEEec---CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC--c
Confidence 11225999995 6777777755433 134468999999999876431 23368999999885 3
Q ss_pred cEEEeccCCccc--cC--CCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 495 PRILFDRSSEDV--YS--DPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 495 ~~~~~~~~~~~~--~~--~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
...++....... .. ......++|||||++|+|.... ...++||++++..+.
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~------------------~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 332 QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV------------------HGKPALYLATLPESV 386 (388)
T ss_dssp EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT------------------TSSCEEEEEECCGGG
T ss_pred eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC------------------CCceeEEEEECChhc
Confidence 444544332100 00 0001126799999999998731 124579999987543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=252.38 Aligned_cols=348 Identities=16% Similarity=0.078 Sum_probs=219.4
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.++|||||++|+|.... . ...|.++.+++|+|++.+ ++.++|+..+ ..+.
T Consensus 66 ~~~~Spdg~~l~~~~~~----------------------~--~~~r~~~~~~~~~~d~~~----~~~~~l~~~~--~~~~ 115 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNY----------------------V--KQWRHSYTASYDIYDLNK----RQLITEERIP--NNTQ 115 (740)
T ss_dssp EEEECTTSSEEEEEEEE----------------------E--ECSSSCEEEEEEEEETTT----TEECCSSCCC--TTEE
T ss_pred ceEECCCCCEEEEEECC----------------------e--eeEEEccceEEEEEECCC----CcEEEcccCC--Ccce
Confidence 37899999999998863 0 111223336899999965 6666676433 4689
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--c------------ccccceEEecCCeEE
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNNSTLL 258 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspDG~~l 258 (958)
.|+|||||++|||+. ..+||++++++|+.+++|..+.... + .....+.|||||+.|
T Consensus 116 ~~~~SPdG~~la~~~----------~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 116 WVTWSPVGHKLAYVW----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp EEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred eeEECCCCCEEEEEE----------CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE
Confidence 999999999999986 4589999999999999986543210 0 001248899999999
Q ss_pred EEEecCCCCCCCC-----CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C---C---eee
Q 002164 259 VCTIPLLRGDPPK-----KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---G---TVK 326 (958)
Q Consensus 259 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~---g---~~~ 326 (958)
+|...+......- ......-+.... +..+..+. .....+|+++++ + | +.+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~---------------~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVR---------------VPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEE---------------EECCBTTS---CCCEEEEEEEETTSCCSSSCCCEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCccee---------------ecCCCCcC---cCCeeEEEEEECCCCCCCCcceEE
Confidence 9985443321000 000000000000 00111100 002347999999 7 7 566
Q ss_pred ecCC------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-------EEEeccCCccccCcc
Q 002164 327 EIGP------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-------VRELCDLPLAEDIPI 392 (958)
Q Consensus 327 ~l~~------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-------~~~l~~~~~~~~~p~ 392 (958)
.+.. . ..+..++|||||+.+++..++.. ....|++||+++++ .+++.... ...
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~---------~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----~~~ 314 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ---------NYSVMDICDYDESSGRWNCLVARQHIEMS----TTG 314 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST---------TEEEEEEEEEETTTTEEEECGGGCEEEEC----SSS
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC---------CEEEEEEEECCCCccccceeEEEEeeecc----CCc
Confidence 6754 2 45678999999998888776532 12379999998765 12221100 000
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEE
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (958)
+.+. .....+.|||||+.|+++.... ++..+||++++ ++++.++|+...+.+..+. ++||+.|+|
T Consensus 315 ~v~~--~~~~~p~fspDG~~l~~~~s~~---------~G~~~l~~~~~---~~~~~~~lT~g~~~v~~~~-~~d~~~i~f 379 (740)
T 4a5s_A 315 WVGR--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTFITKGTWEVIGIE-ALTSDYLYY 379 (740)
T ss_dssp CSSS--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSSCEESCCSSSCEEEEE-EECSSEEEE
T ss_pred eEcc--CcCCCceEcCCCCEEEEEEEcC---------CCceEEEEEEC---CCCceEecccCCEEEEEEE-EEeCCEEEE
Confidence 0000 0134688999999998553322 33568999995 7888899998887776654 467999999
Q ss_pred EEec--c-ccceEEEEEcCCCCCCCcEEEecc---CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 473 ESWY--K-TRRTRTWVISPGSKDVAPRILFDR---SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 473 ~~~~--~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
.++. + ....+||.++++++. ....++.. .....+ .++|||||+++++.....
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~-~~~~lt~~~~~~~~~~~------~~~~S~dg~~~~~~~s~~--------------- 437 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYT-KVTCLSCELNPERCQYY------SVSFSKEAKYYQLRCSGP--------------- 437 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEE-EEEESSTTTSTTTBCBE------EEEECTTSSEEEEEECSB---------------
T ss_pred EEecCCCCCceeEEEEEECCCCC-cceeeccccCCCCCceE------EEEECCCCCEEEEEeCCC---------------
Confidence 9876 2 345789999998741 11234321 111112 278999999988886321
Q ss_pred CCCCCCeEEEEECCCCceEEEecCC
Q 002164 547 PEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
..+.+++++.++++..+++...
T Consensus 438 ---~~p~~~l~~~~~~~~~~~l~~n 459 (740)
T 4a5s_A 438 ---GLPLYTLHSSVNDKGLRVLEDN 459 (740)
T ss_dssp ---SSCEEEEEETTTTEEEEEEECC
T ss_pred ---CCCEEEEEECCCCcEEEEeccC
Confidence 1457899999888777776543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=257.42 Aligned_cols=390 Identities=14% Similarity=0.054 Sum_probs=247.4
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
...+..++||| ++|||.+.. +||+|++.+ +..++|+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~----------------------------------~l~~~~~~g----g~~~~lt~~~- 52 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSNL- 52 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETT----------------------------------EEEEEETTT----CCEEEEECSS-
T ss_pred cceEeCcEEeC--CEEEEEECC----------------------------------cEEEEECCC----CcEEEeeeCC-
Confidence 33567889995 699999864 799999854 6778887633
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccc-------cceEEecCCeEEEE
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIF-------DNFVWVNNSTLLVC 260 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~-------~~~~wspDG~~l~~ 260 (958)
..+..++|||||++|||++... ..++..+||++++++|+.++|+..... + ..++|||||+ |+|
T Consensus 53 -~~v~~~~~SPDG~~la~~s~~~---~~~~~~~i~~~d~~~g~~~~lt~~~~~-----~~~~~~~~~~~~~SpDg~-ll~ 122 (1045)
T 1k32_A 53 -GVINNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGK-----STGRRMFTDVAGFDPDGN-LII 122 (1045)
T ss_dssp -SEEEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEE-----EETTEECSEEEEECTTCC-EEE
T ss_pred -CcccCeEECCCCCEEEEEEeec---cCCCCCeEEEEECCCCCeEEcccCCCc-----ccccccccccccCCCCCE-EEE
Confidence 5789999999999999987531 113567999999999999999875542 4 6899999999 555
Q ss_pred EecCCC---C-C-----------CCCCCCCCC-------C----------------------Cceee-ecCCcccccchh
Q 002164 261 TIPLLR---G-D-----------PPKKPLVPL-------G----------------------PKMQS-NEKRDIIQVRTF 295 (958)
Q Consensus 261 ~~~~~~---~-~-----------~~~~~~~~~-------~----------------------~~~~~-~~~~~~~~~r~~ 295 (958)
+..... . . .......+. + ..++. ..++........
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 533210 0 0 000000000 0 00000 000000000000
Q ss_pred hhh---ccCchhhhHHH--HhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeE
Q 002164 296 QDL---LKDEYDEDLFD--YYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVG 369 (958)
Q Consensus 296 ~d~---~~~~~~~~~~~--~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~ 369 (958)
... .....+.-.+. ..+..+||.++. ++..+.++....+..++|||||++|++.. .++|+
T Consensus 203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~--------------~~~i~ 268 (1045)
T 1k32_A 203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK--------------GGSIY 268 (1045)
T ss_dssp SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE--------------TTEEE
T ss_pred CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe--------------CCEEE
Confidence 000 00000000000 013467999998 66777787664456779999999999985 23899
Q ss_pred EEeccCceEEEeccCCccccCcccccccccCcceeeee-cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc
Q 002164 370 VWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP 448 (958)
Q Consensus 370 l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 448 (958)
+|+++++....+..... ...+. .......+..+.|| |||+.|++. ..+.++++++ .++..
T Consensus 269 ~~d~~~~~l~~l~~~~~-~~~~~-~~~~~~~v~~~~~S~pdG~~la~~--------------~~~~i~~~~~---~~~~~ 329 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDL-ESPED-RIISIPSKFAEDFSPLDGDLIAFV--------------SRGQAFIQDV---SGTYV 329 (1045)
T ss_dssp EECTTTCCEEECCCCCC-CBCCS-EEEECGGGGEEEEEECGGGCEEEE--------------ETTEEEEECT---TSSBE
T ss_pred EecCCceEeeeeccCcc-ccccc-ccccccccceeeecCCCCCEEEEE--------------EcCEEEEEcC---CCCce
Confidence 99996655544332110 00111 01112346789999 999999984 2457899985 55666
Q ss_pred eEEEeecc-ccCceeeecCCceEEEEEeccccceEEE-EEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEE
Q 002164 449 EILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTW-VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526 (958)
Q Consensus 449 ~~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 526 (958)
..+..... .+..+.|| ||+.|+|.+. ...|| ++++.++ +...+. .....+.. ++|||||++|++
T Consensus 330 ~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~--~~~~l~-~~~~~~~~------~~~SpDG~~la~ 395 (1045)
T 1k32_A 330 LKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRTG--KAEKFE-ENLGNVFA------MGVDRNGKFAVV 395 (1045)
T ss_dssp EECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTTC--CEEECC-CCCCSEEE------EEECTTSSEEEE
T ss_pred EEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCCC--CceEec-CCccceee------eEECCCCCEEEE
Confidence 66655555 67789999 9999999875 25799 8998874 333333 22222222 789999999998
Q ss_pred EeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecC-
Q 002164 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK- 605 (958)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~- 605 (958)
... ...|++||+++|+.+.+...... ....++|||||+.+++.....
T Consensus 396 ~~~---------------------~~~v~~~d~~tg~~~~~~~~~~~-----------~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 396 AND---------------------RFEIMTVDLETGKPTVIERSREA-----------MITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp EET---------------------TSEEEEEETTTCCEEEEEECSSS-----------CCCCEEECTTSCEEEEEEEECS
T ss_pred ECC---------------------CCeEEEEECCCCceEEeccCCCC-----------CccceEECCCCCeEEEEecCcc
Confidence 762 12699999999998888743321 112367999999998877654
Q ss_pred -----CCCceEEEEECCCCCeeEeecC
Q 002164 606 -----TENTQYYIQSWPDKKSCQITDF 627 (958)
Q Consensus 606 -----~~p~~~~~~d~~~g~~~~Lt~~ 627 (958)
..+..++++++.+++.+.++..
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred ccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 3456899999998887777654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=244.34 Aligned_cols=335 Identities=12% Similarity=0.074 Sum_probs=202.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC-
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~- 188 (958)
.+..++|||||++|||...+ ... .+......|++|++.+ +..++++.....
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~----------------------~~~--~~~~~~~~i~~~d~~~----~~~~~l~~~~~~~ 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNV----------------------EPI--YQHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESC----------------------CCC--SSSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceEEECCCCCEEEEEecC----------------------ccc--eeecceeeEEEEECCC----CceEeccCCcccc
Confidence 36789999999999999764 100 0111124799999965 444566533221
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--c------------ccccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspD 254 (958)
..+..++|||||++|||++ ..+||++++++|+.++++..+.... + ..+..++||||
T Consensus 114 ~~~~~~~~SPdG~~la~~~----------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred ccccccEECCCCCEEEEEE----------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 1478899999999999986 2489999999999988876543210 0 00247999999
Q ss_pred CeEEEEEecCCCCCCC---CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecC
Q 002164 255 STLLVCTIPLLRGDPP---KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIG 329 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~ 329 (958)
|+.|++...+...... ........+.+. .+....++.. ....+|+++++ +++ .+.+.
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVK---------------PYHYPKAGSE---NPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCE---------------EEECCBTTSC---CCEEEEEEEESSSSCCCEECC
T ss_pred CCEEEEEEECCCccceEEeeccCCcCCCcce---------------eccCCCCCCC---CCeeEEEEEECCCCceeEEee
Confidence 9999998544321100 000000000000 0001111100 02357999999 776 36665
Q ss_pred CC-------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcc
Q 002164 330 PP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (958)
Q Consensus 330 ~~-------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (958)
.+ ..+..++|||||++|++..++.. ....|++||+++++.+.+........ .. ....
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i~~~d~~~g~~~~~~~~~~~~~----~~---~~~~ 309 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQ---------NVSILTLCDATTGVCTKKHEDESEAW----LH---RQNE 309 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTS---------CEEEEEEEETTTCCEEEEEEEECSSC----CC---CCCC
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCC---------CeEEEEEEeCCCCcceEEEEeccCCE----Ee---ccCC
Confidence 42 34567999999998877765421 23479999999777665542110000 00 0013
Q ss_pred eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC---ceEEEeeccccCc-eeeecCCceEEEEEeccc
Q 002164 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGG-ISWCDDSLALVYESWYKT 478 (958)
Q Consensus 403 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~ 478 (958)
.+.|||||+.|++.....++.. .....||+++. .+++. .+.++.....+.. +.|||||+.|+|.+..+.
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~-----~~~~~l~~~d~--~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~ 382 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGR-----GKFYHITVSSS--QPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL 382 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSS-----SCEEEEEEECS--SCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred CceEcCCCCeEEEEEecccCCC-----cceeEEEEEec--cCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence 6899999999998633322210 11346888882 25555 6677655555544 689999999999876641
Q ss_pred -cceEEEEEcCCCCCCCcEEEecc--CCccccCCCCCCceEeccCCceEEEEeee
Q 002164 479 -RRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 479 -~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
...+||.++++++ .....++.. ....+.. ++|||||++|++....
T Consensus 383 ~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 383 PRRRQLYSANTVGN-FNRQCLSCDLVENCTYFS------ASFSHSMDFFLLKCEG 430 (723)
T ss_dssp TTCCEEEEECSSTT-CCCBCSSTTSSSSCCCCE------EEECTTSSEEEEECCS
T ss_pred CcceEEEEEeCCCC-CCcceecccccCCCCeEE------EEECCCCCEEEEEccC
Confidence 3478999998764 122333321 1111222 7899999999988743
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=210.27 Aligned_cols=221 Identities=19% Similarity=0.207 Sum_probs=165.8
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+..+.++++. +|..+.++++.|++. .++.|+||++||... ........+..|+++||.|+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~p~~~----~~~~p~vv~~HG~~g---------------~~~~~~~~~~~l~~~G~~v~ 63 (241)
T 3f67_A 4 IIAGETSIPS-QGENMPAYHARPKNA----DGPLPIVIVVQEIFG---------------VHEHIRDLCRRLAQEGYLAI 63 (241)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTC----CSCEEEEEEECCTTC---------------SCHHHHHHHHHHHHTTCEEE
T ss_pred ceeeeEEEec-CCcceEEEEecCCCC----CCCCCEEEEEcCcCc---------------cCHHHHHHHHHHHHCCcEEE
Confidence 4567888988 899999999999752 235899999999421 11112345667889999999
Q ss_pred EcCCCCCCCCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 717 GGPTTPIIGEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
++++++..|....... ........+|+.++++++.+++ +|+++|+++|||+||.+++.++.+.|+ +++
T Consensus 64 ~~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~ 141 (241)
T 3f67_A 64 APELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKA 141 (241)
T ss_dssp EECTTTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCE
T ss_pred EecccccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cce
Confidence 9666543222111110 1123467899999999999987 888999999999999999999999977 777
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
+|+..+....... .+...+|...+.++++|+|++||++|..+| +.++.++++.++..+.+++
T Consensus 142 ~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~ 203 (241)
T 3f67_A 142 AVAWYGKLVGEKS----------------LNSPKHPVDIAVDLNAPVLGLYGAKDASIP--QDTVETMRQALRAANATAE 203 (241)
T ss_dssp EEEESCCCSCCCC----------------SSSCCCHHHHGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHHHTTCSEE
T ss_pred EEEEeccccCCCc----------------cCCccCHHHhhhhcCCCEEEEEecCCCCCC--HHHHHHHHHHHHHcCCCcE
Confidence 7776664321110 112245556667789999999999999999 9999999999999999999
Q ss_pred EEEeCCCCccCCC-------cccHHHHHHHHHHHHHHh
Q 002164 867 LVILPFESHGYAA-------RESIMHVLWETDRWLQKY 897 (958)
Q Consensus 867 ~~~~p~~~H~~~~-------~~~~~~~~~~i~~fl~~~ 897 (958)
++++|+++|.+.. .+.....++.+.+||++|
T Consensus 204 ~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 204 IVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp EEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999852 334466778889998764
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=210.29 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=149.4
Q ss_pred CCCCeeEeecCCCCCCCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCC
Q 002164 617 PDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNE 696 (958)
Q Consensus 617 ~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~ 696 (958)
..|..+..+..+......-.++.+.+++. .||.+|++++|+|++ ..+.|+||++||++.. .
T Consensus 9 ~~~~~r~~~~~~~~~~~~~~~~e~~~~~~-~dG~~i~g~l~~P~~-----~~~~p~Vl~~HG~g~~-------------~ 69 (259)
T 4ao6_A 9 HHGSMRHQMSWNGKDERKLSVQERGFSLE-VDGRTVPGVYWSPAE-----GSSDRLVLLGHGGTTH-------------K 69 (259)
T ss_dssp --------CEECSCCEEETTEEEEEEEEE-ETTEEEEEEEEEESS-----SCCSEEEEEEC-------------------
T ss_pred ccCcceeeeccCCCccccCCceEEEEEEe-eCCeEEEEEEEeCCC-----CCCCCEEEEeCCCccc-------------c
Confidence 34544444444322222222333445554 599999999999976 2358999999997521 1
Q ss_pred CCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---------------------hhhHHHHHHHHHHHHHHHHHcCC
Q 002164 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---------------------DRFVEQLVACAEAAVEEVVRRGV 755 (958)
Q Consensus 697 ~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---------------------~~~~~~~~~D~~~av~~l~~~~~ 755 (958)
........++.|+++||+|+.+|++ |+|.+... .......+.|..++++++...
T Consensus 70 ~~~~~~~~a~~la~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~-- 144 (259)
T 4ao6_A 70 KVEYIEQVAKLLVGRGISAMAIDGP---GHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE-- 144 (259)
T ss_dssp --CHHHHHHHHHHHTTEEEEEECCC---C-------------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHCCCeEEeeccC---CCCCCCCcccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--
Confidence 1112234577899999999995554 55543211 011234467888999998765
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002164 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (958)
Q Consensus 756 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (958)
+|+++|+++|+|+||++++.+++..| +++++|...+..... ...++...+.++++|+|+
T Consensus 145 ~d~~rv~~~G~S~GG~~a~~~a~~~p-ri~Aav~~~~~~~~~--------------------~~~~~~~~a~~i~~P~Li 203 (259)
T 4ao6_A 145 EGPRPTGWWGLSMGTMMGLPVTASDK-RIKVALLGLMGVEGV--------------------NGEDLVRLAPQVTCPVRY 203 (259)
T ss_dssp HCCCCEEEEECTHHHHHHHHHHHHCT-TEEEEEEESCCTTST--------------------THHHHHHHGGGCCSCEEE
T ss_pred cCCceEEEEeechhHHHHHHHHhcCC-ceEEEEEeccccccc--------------------cccchhhhhccCCCCEEE
Confidence 68899999999999999999999996 477766654422100 011344556788999999
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+||++|.+|| ++++.++|+++.. ..++++++|+ +|... ...+..+.+++||++||+
T Consensus 204 ~hG~~D~~vp--~~~~~~l~~al~~--~~k~l~~~~G-~H~~~---p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 204 LLQWDDELVS--LQSGLELFGKLGT--KQKTLHVNPG-KHSAV---PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEESS-CTTCC---CHHHHTHHHHHHHHHHCC
T ss_pred EecCCCCCCC--HHHHHHHHHHhCC--CCeEEEEeCC-CCCCc---CHHHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999854 4578899998 55432 234667889999999985
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=222.16 Aligned_cols=231 Identities=19% Similarity=0.154 Sum_probs=174.5
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+.++++. ||.+|++++++|++. ++.|+||++||+.... .. .......|+++||+|+
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~-----~~~P~vl~~hG~~~~~-----------~~----~~~~~~~l~~~G~~v~ 183 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP-----GPHPAVIMLGGLESTK-----------EE----SFQMENLVLDRGMATA 183 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS-----CCEEEEEEECCSSCCT-----------TT----THHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC-----CCCCEEEEeCCCCccH-----------HH----HHHHHHHHHhCCCEEE
Confidence 5678889988 899999999999862 3589999999863110 11 1233667899999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
.+++ +|+|.+............++.+++++|.+++.+|+++|+|+|+|+||++++.++.+ |++|+++|+. |+++.
T Consensus 184 ~~d~---rG~G~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~ 258 (386)
T 2jbw_A 184 TFDG---PGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSD 258 (386)
T ss_dssp EECC---TTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSC
T ss_pred EECC---CCCCCCCCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCCh
Confidence 9554 56666522212223345668899999999988899999999999999999999999 7899999999 88775
Q ss_pred CCCCCCccc----------ccchhhhcH-HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH-HhCCCc
Q 002164 797 TLTPFGFQN----------EDRTLWEAT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-KGHGAL 864 (958)
Q Consensus 797 ~~~~~~~~~----------~~~~~~~~~-~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l-~~~g~~ 864 (958)
......+.. ....++... ..+...++...+.++++|+|++||++|. |+ +.++.++++++ +. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~--~~~~~~l~~~l~~~---~ 332 (386)
T 2jbw_A 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE---H 332 (386)
T ss_dssp STTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG---G
T ss_pred HHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CC--HHHHHHHHHHhcCC---C
Confidence 322110000 001122222 4456778888889999999999999999 98 99999999988 64 5
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
++++++++++|.+ .++...+.+.+.+||.+++...
T Consensus 333 ~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 333 LNLVVEKDGDHCC--HNLGIRPRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEEEEETTCCGGG--GGGTTHHHHHHHHHHHHHHTSS
T ss_pred cEEEEeCCCCcCC--ccchHHHHHHHHHHHHHhcCCc
Confidence 8999999999976 4556788999999999999754
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=212.05 Aligned_cols=238 Identities=14% Similarity=0.121 Sum_probs=172.1
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
.++...+|..+.+++..|....+ .++.|+||++||+++..+. .......+..|+++||.|+++++
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~--~~~~p~vv~~HGgg~~~~~------------~~~~~~~~~~l~~~G~~v~~~d~- 81 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNE--NYTFPAIIICPGGGYQHIS------------QRESDPLALAFLAQGYQVLLLNY- 81 (276)
T ss_dssp EECCCBTTBEEEEECCCC--------CCBCEEEEECCSTTTSCC------------GGGSHHHHHHHHHTTCEEEEEEC-
T ss_pred ccccCCCCeEEEEEEeCCccccc--CCCCCEEEEEcCCccccCC------------chhhHHHHHHHHHCCCEEEEecC-
Confidence 35666788888776665543211 2458999999997533211 11123456788999999999555
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEeccCCCCC
Q 002164 722 PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRT 797 (958)
Q Consensus 722 ~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~ 797 (958)
+|+|.+... ..+...+.|+.++++++.++. .+|+++|+|+|||+||.+++.++.+ .+++++++|+.+|+.+..
T Consensus 82 --~g~g~s~~~-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~ 158 (276)
T 3hxk_A 82 --TVMNKGTNY-NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFT 158 (276)
T ss_dssp --CCTTSCCCS-CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTT
T ss_pred --ccCCCcCCC-CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHH
Confidence 455554322 234578899999999999864 3788999999999999999999998 678999999999987633
Q ss_pred CCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
.. +........+. ..+. ...++...+.++++|+|++||++|..+| +.++.+++++++..+.+++++++|+++|.+
T Consensus 159 ~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 233 (276)
T 3hxk_A 159 FG-WPSDLSHFNFE-IENI-SEYNISEKVTSSTPPTFIWHTADDEGVP--IYNSLKYCDRLSKHQVPFEAHFFESGPHGV 233 (276)
T ss_dssp SS-CSSSSSSSCCC-CSCC-GGGBTTTTCCTTSCCEEEEEETTCSSSC--THHHHHHHHHHHTTTCCEEEEEESCCCTTC
T ss_pred hh-CCcchhhhhcC-chhh-hhCChhhccccCCCCEEEEecCCCceeC--hHHHHHHHHHHHHcCCCeEEEEECCCCCCc
Confidence 22 11110000111 0111 4567777888889999999999999999 999999999999999999999999999987
Q ss_pred CCc------------ccHHHHHHHHHHHHHHhhccCC
Q 002164 878 AAR------------ESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 878 ~~~------------~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
... +....+.+.+.+||+++.+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~ 270 (276)
T 3hxk_A 234 SLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNLE 270 (276)
T ss_dssp TTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC
T ss_pred cccCccccccccccCchHHHHHHHHHHHHHhCccccc
Confidence 532 2346788899999999876543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=233.96 Aligned_cols=331 Identities=13% Similarity=0.146 Sum_probs=211.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc------------------cc--ccccce
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY------------------LN--AIFDNF 249 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~------------------~~--~~~~~~ 249 (958)
.+..++|||||++|+|....+ .+.....||++++++|+.++++...... .. ..+..+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 578899999999999987311 1222468999999999988877543210 00 125689
Q ss_pred EEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC---ee
Q 002164 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TV 325 (958)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g---~~ 325 (958)
+|||||+.|++. ...+||++++ +| +.
T Consensus 115 ~~SpDg~~l~~~--------------------------------------------------~~~~i~~~d~~~~~~~~~ 144 (741)
T 2ecf_A 115 QWSPDAQRLLFP--------------------------------------------------LGGELYLYDLKQEGKAAV 144 (741)
T ss_dssp EECTTSSEEEEE--------------------------------------------------ETTEEEEEESSSCSTTSC
T ss_pred EECCCCCEEEEE--------------------------------------------------eCCcEEEEECCCCCcceE
Confidence 999999999988 1246999999 77 77
Q ss_pred eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccc---cCcccccc-cccC
Q 002164 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE---DIPIAFNS-VRKG 400 (958)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~---~~p~~~~~-~~~~ 400 (958)
+.++.. ..+..++|||||++|+|.+.. +|++||+++++.++++...... ..+.+... ....
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~~~--------------~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~ 210 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIRGR--------------NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDR 210 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEETT--------------EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCC
T ss_pred EEcccCCcccccccCCCCCCEEEEEeCC--------------cEEEEecCCCCEEEeccCCccceeccccceeeeecccc
Confidence 778766 667899999999999999732 8999999988887776533210 00000000 0012
Q ss_pred cceeeeecCCCCceEEEEeccCCCc----------------c----cccccCCeEEEEeCCCCCC-CCceEEEe---ecc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDA----------------K----VEVTPRDIIYTQQAEPVQG-EGPEILHK---LDL 456 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~----------------~----~~~~~~~~l~~~~~~~~~g-~~~~~l~~---~~~ 456 (958)
...+.|||||+.|++.......... . ........|+++++ ++ ++.+.+.. ...
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~ 287 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---AEQAQTQWIDLGKEQDI 287 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---STTCCCEEECCCSCSSE
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---CCCCceEEecCCCCcce
Confidence 4679999999999996432110000 0 00011226889985 66 66666642 334
Q ss_pred ccCceeeecCCceEEEEEe-ccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 457 RYGGISWCDDSLALVYESW-YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 457 ~~~~~~~spDg~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
.+..++| |||++|++... .......||++++.++ +...+.......... ....+.|||||+ +++....
T Consensus 288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~--~~~~~~~spdg~-~~~~~~~----- 356 (741)
T 2ecf_A 288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVP--LHNSLRFLDDGS-ILWSSER----- 356 (741)
T ss_dssp EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCC--CCSCCEECTTSC-EEEEECT-----
T ss_pred EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCC--cCCceEECCCCe-EEEEecC-----
Confidence 5677999 99999999875 3334578999999885 334443322211000 001177999999 4444321
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCC-CceEEEE
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTE-NTQYYIQ 614 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~-p~~~~~~ 614 (958)
....+||.+|++++ .+.|+..... +... ..||+||+.+++....... ...+|.+
T Consensus 357 -------------~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~------~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 357 -------------TGFQHLYRIDSKGK-AAALTHGNWS-----VDEL------LAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp -------------TSSCEEEEECSSSC-EEESCCSSSC-----EEEE------EEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred -------------CCccEEEEEcCCCC-eeeeeecceE-----EEeE------eEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 11247999998766 7777665432 1111 2589999988887764322 3467888
Q ss_pred ECCCCCeeEeec
Q 002164 615 SWPDKKSCQITD 626 (958)
Q Consensus 615 d~~~g~~~~Lt~ 626 (958)
+..++..++|+.
T Consensus 412 ~~~g~~~~~l~~ 423 (741)
T 2ecf_A 412 PLQGGQPQRLSK 423 (741)
T ss_dssp ETTCCCCEECCC
T ss_pred EcCCCCeeeccc
Confidence 766666677764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=215.86 Aligned_cols=324 Identities=13% Similarity=0.091 Sum_probs=202.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
...++|||||++|+|+... .+ . ..||++++.+ +..++++.. ...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~----------------------~g--~------~~l~~~d~~~----~~~~~l~~~--~~~ 81 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF----------------------DG--N------RNYYLLNLET----QQAVQLTEG--KGD 81 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT----------------------TS--S------CEEEEEETTT----TEEEECCCS--SCB
T ss_pred eecCcCCCCCCEEEEEEec----------------------CC--C------ceEEEEECCC----CcEEEeecC--CCC
Confidence 5688999999999999863 11 1 3689999854 566666532 223
Q ss_pred -ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 191 -LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 191 -~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
...+.|||||++|+|+.. ..+||++++++++.++++..+. . |+|+|+.|++........
T Consensus 82 ~~~~~~~spdg~~l~~~~~---------~~~l~~~d~~~~~~~~~~~~~~--------~--~~~~g~~l~~~~~~~~~~- 141 (396)
T 3c5m_A 82 NTFGGFISTDERAFFYVKN---------ELNLMKVDLETLEEQVIYTVDE--------E--WKGYGTWVANSDCTKLVG- 141 (396)
T ss_dssp CTTTCEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECCT--------T--EEEEEEEEECTTSSEEEE-
T ss_pred ccccceECCCCCEEEEEEc---------CCcEEEEECCCCCcEEEEeccc--------c--cCCCCCEEEeccCCcccc-
Confidence 334899999999999863 2379999999999888865433 1 899999998752110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHH------hhcceEEEEEc-CCeeeecCCC-ccccccccCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY------YATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP 341 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~------~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp 341 (958)
+... ......++..+.+ ....+||++++ +|+.+.+... ..+..+.|||
T Consensus 142 -----------~~~~-------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 142 -----------IEIL-------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp -----------EEEE-------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred -----------cccc-------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence 0000 0000011111110 14568999999 8887777654 5677899999
Q ss_pred -CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 -DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 -DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
||++|+|.+.... ......|++++++++..+.+...... ..+..+.|||||+.|++.....
T Consensus 198 ~dg~~l~~~~~~~~-------~~~~~~l~~~d~~~~~~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 198 FDDSTVGFCHEGPH-------DLVDARMWLVNEDGSNVRKIKEHAEG-----------ESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp TEEEEEEEEECSCS-------SSCSCCCEEEETTSCCCEESSCCCTT-----------EEEEEEEECTTSSCEEEEEEET
T ss_pred CCCCEEEEEecCCC-------CCCCceEEEEECCCCceeEeeccCCC-----------ccccceEECCCCCEEEEEecCC
Confidence 8999999874211 01124799999988776666542100 1235689999999999864331
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec-CCceEEEEEec------------cccceEEEEEc
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD-DSLALVYESWY------------KTRRTRTWVIS 487 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~------------~~~~~~l~~~~ 487 (958)
. .....|+++++ .+++.+.+...... . +.||| ||+.|++.... ......||+++
T Consensus 260 ~--------~~~~~l~~~d~---~~g~~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 260 G--------QTDRVIYKANP---ETLENEEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp T--------TCCEEEEEECT---TTCCEEEEEECCSE-E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred C--------CccceEEEEEC---CCCCeEEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 1 11234999995 66676666544332 2 89999 99988875421 11236799999
Q ss_pred CCCCCCCcEEEeccCCcc------ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 488 PGSKDVAPRILFDRSSED------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
+.++ +...+....... .+. ....++|||||++|+|.... .....||++|+++
T Consensus 327 ~~~~--~~~~l~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~s~~------------------~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 327 TKAK--SAQKLCKHSTSWDVLDGDRQI--THPHPSFTPNDDGVLFTSDF------------------EGVPAIYIADVPE 384 (396)
T ss_dssp TTTT--BCCEEEECCCCCCCBTTBSST--TCCCCEECTTSSEEEEEECT------------------TSSCEEEEEECCT
T ss_pred cccC--ceEEccCCCCccccccccccC--CCCCceEccCCCeEEEEecC------------------CCCceEEEEEEcc
Confidence 9875 333444332210 000 01126799999999988731 1235799999988
Q ss_pred CceEEE
Q 002164 562 GSKERI 567 (958)
Q Consensus 562 g~~~~l 567 (958)
++.+.+
T Consensus 385 ~~~~~~ 390 (396)
T 3c5m_A 385 SYKHLE 390 (396)
T ss_dssp TCC---
T ss_pred cccccc
Confidence 766544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=217.49 Aligned_cols=327 Identities=12% Similarity=0.087 Sum_probs=202.3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
+..++|||||++|+|+.. .++...||++++++++.++++...... ...+.|||||+.|+|..
T Consensus 38 ~~~~~~SpdG~~l~~~~~------~~g~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~spdg~~l~~~~-------- 99 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGD------FDGNRNYYLLNLETQQAVQLTEGKGDN----TFGGFISTDERAFFYVK-------- 99 (396)
T ss_dssp TTSCCBCTTSCEEEEEEC------TTSSCEEEEEETTTTEEEECCCSSCBC----TTTCEECTTSSEEEEEE--------
T ss_pred eecCcCCCCCCEEEEEEe------cCCCceEEEEECCCCcEEEeecCCCCc----cccceECCCCCEEEEEE--------
Confidence 678999999999999874 345678999999999999987655431 23489999999999872
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cc-ccc-----------
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AV-YTS----------- 336 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~-~~~----------- 336 (958)
...+||++++ +|+.+.+... .. ...
T Consensus 100 -----------------------------------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 100 -----------------------------------------NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTK 138 (396)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred -----------------------------------------cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCc
Confidence 1135899998 7776666542 11 111
Q ss_pred --------cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec
Q 002164 337 --------LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 337 --------~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
+.|||||+++++.... .......|++||+++++.+.+.... .....+.|+|
T Consensus 139 ~~~~~~~~~~~spdg~~~~~~~~~--------~~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~~~~sp 197 (396)
T 3c5m_A 139 LVGIEILKRDWQPLTSWEKFAEFY--------HTNPTCRLIKVDIETGELEVIHQDT-------------AWLGHPIYRP 197 (396)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHH--------HTCCCEEEEEEETTTCCEEEEEEES-------------SCEEEEEEET
T ss_pred cccccccccccCCCCcceeeeeec--------cCCCcceEEEEECCCCcEEeeccCC-------------cccccceECC
Confidence 3455555555443210 0012348999999988777665321 2345789999
Q ss_pred -CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--ccccCceeeecCCceEEEEEecccc-ceEEE
Q 002164 409 -DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTR-RTRTW 484 (958)
Q Consensus 409 -DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~-~~~l~ 484 (958)
||+.|+|..+ +... .....||++++ ++++.+.+... ...+..+.|||||++|+|.....+. ...||
T Consensus 198 ~dg~~l~~~~~---~~~~----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 198 FDDSTVGFCHE---GPHD----LVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp TEEEEEEEEEC---SCSS----SCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEec---CCCC----CCCceEEEEEC---CCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 8998888642 1000 11247899995 66676776543 2345678999999999998765432 24599
Q ss_pred EEcCCCCCCCcEEEeccCCccccCCCCCCceEecc-CCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
++++.++ +...+...... . +.||| ||+.+++.... .+ +.....+.........|++||+++++
T Consensus 268 ~~d~~~g--~~~~l~~~~~~-------~--~~~s~~dg~~l~~~~~~--~p---~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 268 KANPETL--ENEEVMVMPPC-------S--HLMSNFDGSLMVGDGCD--AP---VDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECTTTC--CEEEEEECCSE-------E--EEEECSSSSEEEEEECC--C-------------CCCCCCEEEEEETTTTB
T ss_pred EEECCCC--CeEEeeeCCCC-------C--CCccCCCCceEEEecCC--cc---eeeccccccccCCCCcEEEEecccCc
Confidence 9999875 33444322211 1 56999 99987765411 00 00000000001123579999999998
Q ss_pred eEEEecCCccc-ccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeec
Q 002164 564 KERIWESDKEK-YYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (958)
Q Consensus 564 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~ 626 (958)
.++|+...... .+.. ........++|+|||+.+++..... ...++|++++.+++.+.+..
T Consensus 332 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 332 AQKLCKHSTSWDVLDG--DRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp CCEEEECCCCCCCBTT--BSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC-----
T ss_pred eEEccCCCCccccccc--cccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEcccccccccc
Confidence 88887644210 0000 0000112367999999998887654 45679999998887766543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-21 Score=215.61 Aligned_cols=249 Identities=14% Similarity=0.113 Sum_probs=181.9
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|++|++. | +..+.++... ..+..++|||||++|+|+.. .++...|+++|+++|+.++++.....
T Consensus 159 ~~i~i~d~~--g--~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~------~~~~~~i~~~d~~tg~~~~l~~~~~~-- 224 (415)
T 2hqs_A 159 YELRVSDYD--G--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 224 (415)
T ss_dssp EEEEEEETT--S--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC--
T ss_pred ceEEEEcCC--C--CCCEEEeCCC--CcceeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCcEEEeecCCCc--
Confidence 379999984 3 5566776532 46899999999999999873 33457999999999998888765442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
+..++|||||+.|+++... + +..+||++++
T Consensus 225 ---~~~~~~spdg~~la~~~~~---------------------------------------~-------g~~~i~~~d~~ 255 (415)
T 2hqs_A 225 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 255 (415)
T ss_dssp ---EEEEEECTTSSEEEEEECT---------------------------------------T-------SSCEEEEEETT
T ss_pred ---ccCEEEcCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 6789999999999977210 0 3356999999
Q ss_pred CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|+.+.++.. ..+..++|||||++|++.+.... ..+|++||+++++.+.++... ..
T Consensus 256 ~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~~-------------~~ 312 (415)
T 2hqs_A 256 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 312 (415)
T ss_dssp TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSS-------------SE
T ss_pred CCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecCC-------------Cc
Confidence 8888888776 66789999999999999985321 237999999987766665422 22
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
...+.|||||+.|++.... .....|+++++ ++++.+.++... .+..++|+|||+.|++.+..++ .
T Consensus 313 ~~~~~~spdG~~l~~~~~~----------~g~~~i~~~d~---~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~ 377 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-G 377 (415)
T ss_dssp EEEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT-E
T ss_pred ccCeEECCCCCEEEEEECc----------CCceEEEEEEC---CCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-c
Confidence 3578999999999885321 12357999996 666766665543 6778999999999999887654 3
Q ss_pred eEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCC
Q 002164 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (958)
Q Consensus 481 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG 521 (958)
..||+++++++ ....+. .....+.+ ++|||--
T Consensus 378 ~~l~~~d~~g~--~~~~l~-~~~~~v~~------~~~~~~~ 409 (415)
T 2hqs_A 378 SVLNLVSTDGR--FKARLP-ATDGQVKF------PAWSPYL 409 (415)
T ss_dssp EEEEEEETTSC--CEEECC-CSSSEEEE------EEECCCC
T ss_pred cEEEEEECCCC--cEEEee-CCCCCCcC------Ccccccc
Confidence 68999999864 333333 23333443 7788854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=215.99 Aligned_cols=255 Identities=15% Similarity=0.132 Sum_probs=184.8
Q ss_pred CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002164 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (958)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (958)
.+++|+|+.... .+.....|+++|++++..+.++..... +..++|||||+.|++...+.
T Consensus 142 ~~~~l~~~s~~~---~~~~~~~i~i~d~~g~~~~~l~~~~~~-----v~~~~~Spdg~~la~~s~~~------------- 200 (415)
T 2hqs_A 142 FRTRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES------------- 200 (415)
T ss_dssp TTCEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT-------------
T ss_pred CCCEEEEEEecC---CCCccceEEEEcCCCCCCEEEeCCCCc-----ceeeEEcCCCCEEEEEEecC-------------
Confidence 488999987521 111127999999998888888765443 67899999999999882110
Q ss_pred CceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002164 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (958)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 356 (958)
+...|+++++ +|+.+.+... ..+..++|||||++|+|+....
T Consensus 201 ---------------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~--- 244 (415)
T 2hqs_A 201 ---------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--- 244 (415)
T ss_dssp ---------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT---
T ss_pred ---------------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC---
Confidence 2346999999 8887777765 6678999999999999887432
Q ss_pred ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEE
Q 002164 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (958)
Q Consensus 357 ~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (958)
...+|++||+++++.+.++... .....+.|||||+.|++.... .....||
T Consensus 245 -------g~~~i~~~d~~~~~~~~l~~~~-------------~~~~~~~~spdg~~l~~~s~~----------~g~~~i~ 294 (415)
T 2hqs_A 245 -------GSLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQNLAFTSDQ----------AGRPQVY 294 (415)
T ss_dssp -------SSCEEEEEETTTCCEEECCCCS-------------SCEEEEEECTTSSEEEEEECT----------TSSCEEE
T ss_pred -------CCceEEEEECCCCCEEeCcCCC-------------CcccceEECCCCCEEEEEECC----------CCCcEEE
Confidence 1237999999988777776543 234578999999999985321 2234799
Q ss_pred EEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceE
Q 002164 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (958)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (958)
++++ ++++.+.++.....+..+.|||||++|++....++ ...|++++++++ +...+.... .+.. ++
T Consensus 295 ~~d~---~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~~~--~~~~l~~~~--~~~~------~~ 360 (415)
T 2hqs_A 295 KVNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLSSTF--LDET------PS 360 (415)
T ss_dssp EEET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETTTC--CEEECCCSS--SCEE------EE
T ss_pred EEEC---CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEECCCC--CEEEecCCC--CcCC------eE
Confidence 9995 66677777655556678999999999999876543 367999999875 333333221 2222 78
Q ss_pred eccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
|+|||++|++..... ....||+||++++..++|....+
T Consensus 361 ~spdg~~l~~~s~~~------------------~~~~l~~~d~~g~~~~~l~~~~~ 398 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDG 398 (415)
T ss_dssp ECTTSSEEEEEEEET------------------TEEEEEEEETTSCCEEECCCSSS
T ss_pred EcCCCCEEEEEEcCC------------------CccEEEEEECCCCcEEEeeCCCC
Confidence 999999999987431 12369999999888888876654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=237.70 Aligned_cols=343 Identities=14% Similarity=0.055 Sum_probs=210.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce---eeeccCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE---IEIQGFP 186 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~---~~lt~~~ 186 (958)
.+..++|||||++|||.... . ...+-+....|++|++.+ ++. ++++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~----------------------~--~~~~~s~~~~i~~~d~~~----g~~~~~~~l~--- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDY----------------------S--KLWRYSYTATYYIYDLSN----GEFVRGNELP--- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEE----------------------E--ECSSSCEEEEEEEEETTT----TEECCSSCCC---
T ss_pred ceeeEEECCCCCeEEEEecC----------------------c--eeEEeecceEEEEEECCC----CccccceecC---
Confidence 36789999999999998762 0 001112236899999954 444 4442
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--c------------ccccceEEe
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWV 252 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~------------~~~~~~~ws 252 (958)
..+..++|||||++|||+. ..+||++++++|+.++++..+.... + .....++||
T Consensus 110 --~~~~~~~~SPDG~~la~~~----------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 110 --RPIQYLCWSPVGSKLAYVY----------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp --SSBCCEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred --cccccceECCCCCEEEEEE----------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 2478899999999999975 3489999999999988875442110 0 001479999
Q ss_pred cCCeEEEEEecCCCCCCC---CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee--
Q 002164 253 NNSTLLVCTIPLLRGDPP---KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-- 326 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-- 326 (958)
|||+.|++...+...... .....+..+.... . ..+..+. .....+|+++++ +++..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~--------~-------~yp~~g~---~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN--------I-------PYPKAGA---KNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE--------E-------ECCBTTS---CCCEEEEEEEESSCHHHHCC
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCcccee--------e-------cCCCCCC---CCCeeEEEEEECCCCCccce
Confidence 999999998543222100 0000000000000 0 0000000 002357999999 66542
Q ss_pred -ecCC------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEe----ccCceEEEecc---CCccccCc
Q 002164 327 -EIGP------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT----TDGIFVRELCD---LPLAEDIP 391 (958)
Q Consensus 327 -~l~~------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d----~~~~~~~~l~~---~~~~~~~p 391 (958)
.+.. . ..+..++|||||+.++...++.. ...+|++|| +++++.+.+.. ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~---------~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~---- 306 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ---------NVSVLSICDFREDWQTWDCPKTQEHIEESRT---- 306 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST---------TEEEEEEEEECSSSSSEECCGGGEEEEECSS----
T ss_pred eEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc---------CeEEEEEEcccCCCCCCceEEEEecccccCC----
Confidence 4432 2 45678999999765544333211 123799999 77776655542 0000
Q ss_pred ccccccccCcc-----eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 392 IAFNSVRKGMR-----SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 392 ~~~~~~~~~~~-----~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
..+. .+.|||||+.+++..... +....||++++ ++++.+.++...+.+..+.++ |
T Consensus 307 -------~~~~~~~~~~~~~spdg~~l~~~~~~~---------~g~~~l~~~~~---~~~~~~~lt~~~~~v~~~~~~-d 366 (719)
T 1z68_A 307 -------GWAGGFFVSTPVFSYDAISYYKIFSDK---------DGYKHIHYIKD---TVENAIQITSGKWEAINIFRV-T 366 (719)
T ss_dssp -------SCSSSSSCCCCEECTTSSCEEEEEECT---------TSCEEEEEESS---CSTTCEECSCSSSCEEEEEEE-C
T ss_pred -------ceEccccCCccEECCCCCeEEEEEEcc---------CCceEEEEEEC---CCCceEecccCceEEEEEEEE-e
Confidence 1122 678999999998864332 23457999985 667778887777777777778 9
Q ss_pred CceEEEEEec--c-ccceEEEEEcCCCCCCCcEEEecc---CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEE
Q 002164 467 SLALVYESWY--K-TRRTRTWVISPGSKDVAPRILFDR---SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILL 540 (958)
Q Consensus 467 g~~l~~~~~~--~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 540 (958)
|+.|+|.+.. + ....+||.++++++..+...++.. ....+.. ++|||||+++++.....
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~------~~~s~dg~~l~~~~s~~--------- 431 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT------ASFSDYAKYYALVCYGP--------- 431 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE------EEECGGGSSEEEEECCB---------
T ss_pred CCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE------EEECCCCCEEEEEcCCC---------
Confidence 9999999865 1 234789999986642223333321 1111112 67999999998876321
Q ss_pred ccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 541 NGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 541 ~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
..+.+++||+++|+..+++..
T Consensus 432 ---------~~p~~~l~d~~~g~~~~~~~~ 452 (719)
T 1z68_A 432 ---------GIPISTLHDGRTDQEIKILEE 452 (719)
T ss_dssp ---------SSCEEEEECSSSCCEEEEEEC
T ss_pred ---------CCCeEEEEECCCCCEEEEeec
Confidence 234688999988887766654
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=213.35 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=167.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEe-cCCCC------------------CCCCCCceEEEEECCCCCcCcccCCcccCCCC
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYL-PPGYD------------------PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPN 695 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~-P~~~~------------------~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~ 695 (958)
..+..+.+++...+| +.+.+|+ |.+.. ....+++|+||++|||++..+...
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~-------- 129 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSAS-------- 129 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTT--------
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCc--------
Confidence 456678999998888 7778887 87531 112346899999999865432211
Q ss_pred CCCCcCcHHHHHHHHC-CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeChH
Q 002164 696 EFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSYG 769 (958)
Q Consensus 696 ~~~~~~~~~~~~la~~-G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~----~~d~~-~i~l~G~S~G 769 (958)
.......+..|+++ ||+|+.++|+...+. .++..++|+.++++|+.++. .+|++ ||+|+|+|+|
T Consensus 130 --~~~~~~~~~~la~~~g~~Vv~~dyR~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~G 199 (365)
T 3ebl_A 130 --STIYDSLCRRFVKLSKGVVVSVNYRRAPEH--------RYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSG 199 (365)
T ss_dssp --BHHHHHHHHHHHHHHTSEEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHH
T ss_pred --hhhHHHHHHHHHHHCCCEEEEeeCCCCCCC--------CCcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCcc
Confidence 01112345677775 999999888644322 23567899999999999765 58999 9999999999
Q ss_pred HHHHHHHHHhCCC---ceeEEEEeccCCCCCCCCCCcc--------c--ccchhhhcH------HHHHhcCccc-ccCCC
Q 002164 770 AFMTANLLAHAPH---LFCCGIARSGAYNRTLTPFGFQ--------N--EDRTLWEAT------STYVEMSPFM-SANKL 829 (958)
Q Consensus 770 G~~a~~~a~~~p~---~~~a~v~~~~~~~~~~~~~~~~--------~--~~~~~~~~~------~~~~~~sp~~-~~~~~ 829 (958)
|++|+.++.+.++ +++++|+++|+++......... . .....|... ......+|+. ....+
T Consensus 200 G~la~~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 279 (365)
T 3ebl_A 200 GNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL 279 (365)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh
Confidence 9999999987654 7999999999877432110000 0 000011100 0001122332 23344
Q ss_pred C----CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHhhccCC
Q 002164 830 K----KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 830 ~----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~---~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
+ .|+||+||++|.. ..++.+++++|+..|+++++++|||++|.+. ..+...++++.+.+||+++++.+.
T Consensus 280 ~~~~~pP~Li~~G~~D~l----~~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~ 355 (365)
T 3ebl_A 280 GGLPFAKSLIIVSGLDLT----CDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYGS 355 (365)
T ss_dssp TTSCCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC---
T ss_pred ccCCCCCEEEEEcCcccc----hhHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhccc
Confidence 4 5899999999965 4567899999999999999999999999875 345677899999999999987543
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=206.46 Aligned_cols=237 Identities=14% Similarity=0.097 Sum_probs=165.9
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
+..+.+++. .+|..+.+.+|.|+.... ...++.|+||++|||.+..+. ... ....+..|+++||.|
T Consensus 2 m~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~--------~~~----~~~~~~~l~~~G~~v 68 (277)
T 3bxp_A 2 MQVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHS--------GRE----EAPIATRMMAAGMHT 68 (277)
T ss_dssp EEEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCC--------CTT----HHHHHHHHHHTTCEE
T ss_pred cceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCC--------Ccc----chHHHHHHHHCCCEE
Confidence 345667774 578889999999973210 112358999999997543221 111 124566788999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC------------
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA------------ 780 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~------------ 780 (958)
++++++ |+|.... .....+.|+.++++|+.++. .+|+++|+|+|+|+||.+|+.++.+.
T Consensus 69 ~~~d~~---g~g~~~~---~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~ 142 (277)
T 3bxp_A 69 VVLNYQ---LIVGDQS---VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD 142 (277)
T ss_dssp EEEECC---CSTTTCC---CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCT
T ss_pred EEEecc---cCCCCCc---cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcc
Confidence 996554 5442111 23467889999999998863 36788999999999999999999984
Q ss_pred --CCceeEEEEeccCCCCCCCCCCcccccchhh-hcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 781 --PHLFCCGIARSGAYNRTLTPFGFQNEDRTLW-EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 781 --p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
+.+++++|+.+|..+.... +.. ..... .....+...+|...+.++.+|+|++||++|..+| ++++.+++++
T Consensus 143 ~~~~~~~~~v~~~p~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~ 216 (277)
T 3bxp_A 143 HYQGQHAAIILGYPVIDLTAG---FPT-TSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVP--PINSLKYVQA 216 (277)
T ss_dssp TCCCCCSEEEEESCCCBTTSS---SSS-SHHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSC--THHHHHHHHH
T ss_pred cccCCcCEEEEeCCcccCCCC---CCC-ccccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccC--hHHHHHHHHH
Confidence 6789999999998763321 110 00000 0001233467777788888999999999999999 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcc--------------cHHHHHHHHHHHHHHhh
Q 002164 858 LKGHGALCRLVILPFESHGYAARE--------------SIMHVLWETDRWLQKYC 898 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~--------------~~~~~~~~i~~fl~~~l 898 (958)
++..+.+++++++++++|.+.... ....+++.+.+||.++.
T Consensus 217 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 217 MLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHTTCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 999999999999999999764322 24678889999998864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=228.07 Aligned_cols=333 Identities=12% Similarity=0.116 Sum_probs=213.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..++|||| ++++|.... .|++|++.+ +..++++.. .
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~----------------------------------~i~~~d~~~----~~~~~l~~~--~ 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQG----------------------------------GLVGFDMLA----RKVTYLFDT--N 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETT----------------------------------EEEEEETTT----TEEEEEECC--T
T ss_pred cCceeEEECCC-CeEEEEECC----------------------------------EEEEEECCC----CceEEccCC--c
Confidence 35778999999 889888653 899999855 555666542 2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-----CceeeccCCCCccc-cc---------cccceEEec
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-----GKARPLFQSPDIYL-NA---------IFDNFVWVN 253 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~lt~~~~~~~-~~---------~~~~~~wsp 253 (958)
..+..++|||||++|+|+. ..+||++++++ |+.++++....... ++ .+..+.|||
T Consensus 121 ~~~~~~~~SpdG~~la~~~----------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp 190 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVR----------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP 190 (706)
T ss_dssp TCCTTCEECTTSSEEEEEE----------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred ccccCCcCCCCCCEEEEEE----------CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence 4688999999999999964 46899999999 99888876554310 00 025899999
Q ss_pred CCeEEEEEecCCCCCCC-CCC-CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC
Q 002164 254 NSTLLVCTIPLLRGDPP-KKP-LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP 330 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~ 330 (958)
||+.|++...+...... ... .....+.... . ..+..+ ......+|+++++ +|+.+.+..
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~--------~-------~y~~~g---~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP--------L-------YYPMAG---TPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEE--------E-------CCCBTT---SCCCEEEEEEEETTTTEEEECCC
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEE--------e-------eCCCCC---CCCCeeEEEEEECCCCceEeecc
Confidence 99999998533222100 000 0000000000 0 000000 0003467999999 887776653
Q ss_pred C----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceee
Q 002164 331 P----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 331 ~----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
. ..+..++|||||++|++.+.... .....+++||++++ ..+.+....... +. .....+.
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~--------~~~~~v~~~d~~~g~~~~~~~~~~~~~----~~----~~~~~~~ 316 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRA--------QNECKVNAYDAETGRFVRTLFVETDKH----YV----EPLHPLT 316 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTT--------SCEEEEEEEETTTCCEEEEEEEEECSS----CC----CCCSCCE
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCC--------CCeeEEEEEECCCCceeeEEEEccCCC----eE----CccCCce
Confidence 2 45678999999999999874421 11248999999977 665554311110 00 0124678
Q ss_pred eec--CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCc-eeeecCCceEEEEEeccc-cce
Q 002164 406 WRS--DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRT 481 (958)
Q Consensus 406 ~sp--DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~ 481 (958)
||| ||+.++. . .. +....||.++. +++..+.++...+.+.. +.|||||+.|+|....++ ...
T Consensus 317 ~sp~~dg~~l~~-~-~~---------~g~~~l~~~~~---~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 317 FLPGSNNQFIWQ-S-RR---------DGWNHLYLYDT---TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp ECTTCSSEEEEE-E-CT---------TSSCEEEEEET---TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred eecCCCCEEEEE-E-cc---------CCccEEEEEEC---CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 999 9984433 1 11 23456888884 66667777776666655 799999999999876543 236
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
.||.++++++ ....+.. ...+.. ++|||||++|++..... .....|++||+++
T Consensus 383 ~l~~~d~~~~--~~~~l~~--~~~~~~------~~~spdg~~l~~~~~~~-----------------~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 383 HFYCIDIKGG--KTKDLTP--ESGMHR------TQLSPDGSAIIDIFQSP-----------------TVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEETTCC--CCEESCC--SSSEEE------EEECTTSSEEEEEEECS-----------------SCSCEEEEEESSS
T ss_pred EEEEEEcCCC--CceeccC--CCceEE------EEECCCCCEEEEEecCC-----------------CCCcEEEEEECCC
Confidence 8999998875 3344432 122222 78999999999886321 1234699999988
Q ss_pred CceEEE
Q 002164 562 GSKERI 567 (958)
Q Consensus 562 g~~~~l 567 (958)
++...+
T Consensus 436 ~~~~~~ 441 (706)
T 2z3z_A 436 GSHTLL 441 (706)
T ss_dssp CEEEEE
T ss_pred CeEeec
Confidence 874333
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=196.94 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=163.4
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
.+++++.+| .+.++++.|.+ .+.|+||++||.+...+. .........+..|+++||.|+.
T Consensus 25 ~~~~~~~~g-~l~~~~~~p~~------~~~p~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~G~~v~~--- 84 (249)
T 2i3d_A 25 EVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGT----------MNNQIVYQLFYLFQKRGFTTLR--- 84 (249)
T ss_dssp EEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCC----------TTSHHHHHHHHHHHHTTCEEEE---
T ss_pred EEEEECCCc-eEEEEEEcCCC------CCCCEEEEECCCcccCCC----------ccchHHHHHHHHHHHCCCEEEE---
Confidence 888999888 89999998853 237999999995321110 0000112456678899999999
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
.+.+|+|.+..........++|+.++++++.++. .++++++++|||+||.+++.++.+.|+ ++++|+++|..+...
T Consensus 85 ~d~~g~G~s~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-- 160 (249)
T 2i3d_A 85 FNFRSIGRSQGEFDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD-- 160 (249)
T ss_dssp ECCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC--
T ss_pred ECCCCCCCCCCCCCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh--
Confidence 4555677665443322344599999999999885 477899999999999999999999988 999999998754210
Q ss_pred CCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCccCCC
Q 002164 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFESHGYAA 879 (958)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~p~~~H~~~~ 879 (958)
...+.++++|+|+++|++|..+| +..++++++.++. .+.+++++++|+++|.+.
T Consensus 161 ----------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~- 215 (249)
T 2i3d_A 161 ----------------------FSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN- 215 (249)
T ss_dssp ----------------------CTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT-
T ss_pred ----------------------hhhhcccCCCEEEEEcCCCCCCC--HHHHHHHHHHHhhccCCceeEEEECCCCcccc-
Confidence 12345678999999999999999 9999999999986 456899999999999985
Q ss_pred cccHHHHHHHHHHHHHHhhccC
Q 002164 880 RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
+....+.+.+.+||.+++...
T Consensus 216 -~~~~~~~~~i~~fl~~~l~~~ 236 (249)
T 2i3d_A 216 -GKVDELMGECEDYLDRRLNGE 236 (249)
T ss_dssp -TCHHHHHHHHHHHHHHHHTTC
T ss_pred -cCHHHHHHHHHHHHHHhcCCC
Confidence 567888999999999998643
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=208.88 Aligned_cols=232 Identities=16% Similarity=0.115 Sum_probs=172.0
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.++++. +|.++.++++.|+ +.|+||++||++.. .. .....+..|+++||.|++
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~--------~~p~vv~~HG~~~~-----------~~----~~~~~~~~l~~~g~~v~~ 60 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT--------GMPGVLFVHGWGGS-----------QH----HSLVRAREAVGLGCICMT 60 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE--------SEEEEEEECCTTCC-----------TT----TTHHHHHHHHTTTCEEEC
T ss_pred ceeeEEecC-CCeEEEEEEecCC--------CCcEEEEeCCCCCC-----------cC----cHHHHHHHHHHCCCEEEE
Confidence 456777877 8899999999986 27999999996421 11 123456778889999999
Q ss_pred cCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 718 GPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
.+.+|+|.+.... .......+|+.++++++.+++.+|+++|+|+|||+||.+++.++.+.| ++++++.+|...
T Consensus 61 ---~d~~G~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~ 135 (290)
T 3ksr_A 61 ---FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALY 135 (290)
T ss_dssp ---CCCTTSGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCC
T ss_pred ---eecCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchh
Confidence 5556777664432 245677899999999999998888899999999999999999999986 788888887654
Q ss_pred CCCCCCCcccc-------cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 796 RTLTPFGFQNE-------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 796 ~~~~~~~~~~~-------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
... .|..... ....+.....+...++...+.++++|+|++||++|..++ +.++.++++.++..+ +++++
T Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~~~~-~~~~~ 211 (290)
T 3ksr_A 136 KDA-HWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP--HPVMRNYADAFTNAR-SLTSR 211 (290)
T ss_dssp CSS-CTTSBHHHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSC--HHHHHHHHHHTTTSS-EEEEE
T ss_pred hhh-hhhcccccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccC--hHHHHHHHHHhccCC-CceEE
Confidence 221 1111000 000111111111223334556788999999999999999 999999999998765 79999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 869 ILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 869 ~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++|+++|.+...+....+.+.+.+||.+++....
T Consensus 212 ~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~~~~~ 245 (290)
T 3ksr_A 212 VIAGADHALSVKEHQQEYTRALIDWLTEMVVGRR 245 (290)
T ss_dssp EETTCCTTCCSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EcCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999987666778889999999999987543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=237.06 Aligned_cols=272 Identities=8% Similarity=-0.015 Sum_probs=189.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..|.|||| +|+|+.. .++..+||.++.+++..++++.... +..++|||||+.|++.
T Consensus 205 ~v~~~~~s~d--~l~~~~~------~dg~~~l~~~~~~g~~~~~l~~~~~------~~~~~~SpDG~~la~~-------- 262 (1045)
T 1k32_A 205 HVSSPVIVGH--RIYFITD------IDGFGQIYSTDLDGKDLRKHTSFTD------YYPRHLNTDGRRILFS-------- 262 (1045)
T ss_dssp CCEEEEEETT--EEEEEEC------TTSSCEEEEEETTSCSCEECCCCCS------SCEEEEEESSSCEEEE--------
T ss_pred cccceEEeCC--EEEEEEe------ccCceEEEEEeCCCCcceEecCCCC------cceeeEcCCCCEEEEE--------
Confidence 4556778776 7777653 3467799999999988888876553 4467999999999987
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------------ccccc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------------AVYTS 336 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------------~~~~~ 336 (958)
....||++++ .+....+... ..+..
T Consensus 263 ------------------------------------------~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 263 ------------------------------------------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp ------------------------------------------ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred ------------------------------------------eCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence 1234777776 4444444331 25788
Q ss_pred cccC-CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 337 LDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 337 ~~~S-pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
++|| |||++|++.+. +++++|++.++..+.++..+. ..+..+.|+ ||+.+++
T Consensus 301 ~~~S~pdG~~la~~~~--------------~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVSR--------------GQAFIQDVSGTYVLKVPEPLR------------IRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp EEEEECGGGCEEEEET--------------TEEEEECTTSSBEEECSCCSC------------EEEEEECSS-SEEEEEE
T ss_pred eeecCCCCCEEEEEEc--------------CEEEEEcCCCCceEEccCCCc------------ceEEeeeEc-CCCeEEE
Confidence 9999 99999999872 289999998877766654321 134678999 9999988
Q ss_pred EEEeccCCCcccccccCCeEE-EEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIY-TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
. +....+| ++++ ++++.+.++.....+..++|||||++|++.... ..|+++++.++ +
T Consensus 354 ~-------------s~~~~l~~~~d~---~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~----~~v~~~d~~tg--~ 411 (1045)
T 1k32_A 354 G-------------TREGDFLGIYDY---RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR----FEIMTVDLETG--K 411 (1045)
T ss_dssp E-------------ETTEEEEEEEET---TTCCEEECCCCCCSEEEEEECTTSSEEEEEETT----SEEEEEETTTC--C
T ss_pred E-------------ECCCceEEEEEC---CCCCceEecCCccceeeeEECCCCCEEEEECCC----CeEEEEECCCC--c
Confidence 5 2245788 8985 667777776445667789999999999988643 36889998875 4
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccc
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEK 574 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~ 574 (958)
...+.......+.. ++|||||++|++.....+. .........|++||+++++.+.++.....
T Consensus 412 ~~~~~~~~~~~v~~------~~~SpDG~~la~~~~~~~~-----------~~~~~~~~~i~l~d~~~g~~~~l~~~~~~- 473 (1045)
T 1k32_A 412 PTVIERSREAMITD------FTISDNSRFIAYGFPLKHG-----------ETDGYVMQAIHVYDMEGRKIFAATTENSH- 473 (1045)
T ss_dssp EEEEEECSSSCCCC------EEECTTSCEEEEEEEECSS-----------TTCSCCEEEEEEEETTTTEEEECSCSSSB-
T ss_pred eEEeccCCCCCccc------eEECCCCCeEEEEecCccc-----------cccCCCCCeEEEEECCCCcEEEeeCCCcc-
Confidence 44444333333333 8899999999988742100 00001234799999999887777654432
Q ss_pred ccceeEeecCCCccccccccCCEEEEEEe
Q 002164 575 YYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 575 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
.. .+.|+|||+.+++...
T Consensus 474 ----~~-------~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 474 ----DY-------APAFDADSKNLYYLSY 491 (1045)
T ss_dssp ----EE-------EEEECTTSCEEEEEES
T ss_pred ----cC-------CceEcCCCCEEEEEec
Confidence 11 2579999999888765
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=215.01 Aligned_cols=221 Identities=19% Similarity=0.193 Sum_probs=158.1
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~ 730 (958)
.+.+++|+|++ .++.|+||++||+... .....+..|+++||.|+++++++ +|.+.
T Consensus 144 ~l~~~l~~P~~-----~~~~P~Vv~~hG~~~~-----------------~~~~~a~~La~~Gy~V~a~D~rG---~g~~~ 198 (422)
T 3k2i_A 144 RVRATLFLPPG-----PGPFPGIIDIFGIGGG-----------------LLEYRASLLAGHGFATLALAYYN---FEDLP 198 (422)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCTTCS-----------------CCCHHHHHHHTTTCEEEEEECSS---STTSC
T ss_pred cEEEEEEcCCC-----CCCcCEEEEEcCCCcc-----------------hhHHHHHHHHhCCCEEEEEccCC---CCCCC
Confidence 68999999975 3458999999996321 11234678899999999966654 44332
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc----
Q 002164 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (958)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~---- 806 (958)
... .....+|+.++++||.++..+|+++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 199 ~~~--~~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 275 (422)
T 3k2i_A 199 NNM--DNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPP 275 (422)
T ss_dssp SSC--SCEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECC
T ss_pred CCc--ccCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCC
Confidence 211 11236788999999999988899999999999999999999999987 99999988875322211111000
Q ss_pred -----------------cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHH-HHHHHHHHhCCCc-EEE
Q 002164 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGAL-CRL 867 (958)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~-~~~ 867 (958)
....+..+......+....+.++++|+|++||++|..+| .... .++.++|+..+.+ +++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 353 (422)
T 3k2i_A 276 LGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWR--SELYAQTVSERLQAHGKEKPQI 353 (422)
T ss_dssp CCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHHhcCCCCCEE
Confidence 000111111111223334567789999999999999998 7755 6899999999988 999
Q ss_pred EEeCCCCccCCC---------------------------cccHHHHHHHHHHHHHHhhccC
Q 002164 868 VILPFESHGYAA---------------------------RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 868 ~~~p~~~H~~~~---------------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
++||+++|.+.. .+...++++.+.+||+++|...
T Consensus 354 ~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 354 ICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp EEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999732 1446778899999999999754
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-21 Score=216.27 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=155.8
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~ 730 (958)
.+.+++|+|++ .++.|+||++||+... .....+..|+++||.|+++++++..+.....
T Consensus 160 ~l~~~l~~P~~-----~~~~P~Vv~lhG~~~~-----------------~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~ 217 (446)
T 3hlk_A 160 RVRGTLFLPPE-----PGPFPGIVDMFGTGGG-----------------LLEYRASLLAGKGFAVMALAYYNYEDLPKTM 217 (446)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCSSCS-----------------CCCHHHHHHHTTTCEEEEECCSSSTTSCSCC
T ss_pred eEEEEEEeCCC-----CCCCCEEEEECCCCcc-----------------hhhHHHHHHHhCCCEEEEeccCCCCCCCcch
Confidence 68999999975 3458999999996421 0113467889999999997776543322211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc----
Q 002164 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---- 806 (958)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~---- 806 (958)
.. ..++|+.++++||.++..+|+++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 218 ~~-----~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 291 (446)
T 3hlk_A 218 ET-----LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPP 291 (446)
T ss_dssp SE-----EEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECC
T ss_pred hh-----CCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCc
Confidence 11 227788999999999988999999999999999999999999987 99999998865322111110000
Q ss_pred -----------------cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHH-HHHHHHHHhCCCc-EEE
Q 002164 807 -----------------DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGAL-CRL 867 (958)
Q Consensus 807 -----------------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~-~~~ 867 (958)
....+..+...........+.++++|+|++||++|..+| .... .+++++|+..|.+ +++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 369 (446)
T 3hlk_A 292 VGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWK--SEFYANEACKRLQAHGRRKPQI 369 (446)
T ss_dssp CCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcC--hHHHHHHHHHHHHHcCCCCcEE
Confidence 000011111111112223366788999999999999998 7554 7899999999988 899
Q ss_pred EEeCCCCccCC---------------------------CcccHHHHHHHHHHHHHHhhccC
Q 002164 868 VILPFESHGYA---------------------------ARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 868 ~~~p~~~H~~~---------------------------~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
++||+++|.+. ..+...+.++.+.+||+++|...
T Consensus 370 ~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 370 ICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp EEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999983 12235678899999999999654
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=210.23 Aligned_cols=236 Identities=16% Similarity=0.130 Sum_probs=170.0
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...+..+.+++++.+|.++.++++.|++. .++.|+||++||++.... + ......|+++||
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~----~~~~p~vv~~HG~g~~~~------------~----~~~~~~l~~~G~ 122 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 122 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC----CCCccEEEEEcCCCCCCC------------C----chhhcchhhCCC
Confidence 34456889999999999999999999763 235899999999743211 1 112336788999
Q ss_pred EEEEcCCCCCCCCCC--cccc----------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 002164 714 AILGGPTTPIIGEGD--EEAN----------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~--~~~~----------------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~G 769 (958)
+|+++++++..+.+. +... ...+...+.|+.++++++.+++.+|+++|+|+|+|+|
T Consensus 123 ~v~~~d~rG~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~G 202 (337)
T 1vlq_A 123 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 202 (337)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEecCCCCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHH
Confidence 999966654432211 1111 1123578999999999999998889999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCc-----ccccchhh--------hcHHHHHhcCcccccCCCCCCEEEE
Q 002164 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF-----QNEDRTLW--------EATSTYVEMSPFMSANKLKKPILLV 836 (958)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii 836 (958)
|.+++.++.+.| +++++|+.+|..+........ .......+ .....+..+++...+.++++|+|++
T Consensus 203 G~la~~~a~~~p-~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii 281 (337)
T 1vlq_A 203 GGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 281 (337)
T ss_dssp HHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHhcCC-CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEE
Confidence 999999999997 599999888854321000000 00000000 0012234456777888999999999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||++|.++| ++++.+++++++. +++++++|+++|.+.. ....+.+.+||.++|.
T Consensus 282 ~G~~D~~~p--~~~~~~~~~~l~~---~~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 282 VGLMDNICP--PSTVFAAYNYYAG---PKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 335 (337)
T ss_dssp EETTCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred eeCCCCCCC--chhHHHHHHhcCC---CcEEEEcCCCCCCCcc----hhhHHHHHHHHHHHHh
Confidence 999999998 9999999888764 5899999999999632 3456889999999985
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=204.00 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=165.8
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~v 715 (958)
+..+.+++++.+| .+.+++|+|.+. +.|+||++|||++..++ ...+ ...+..|++ +||+|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~------~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPT------SQATLYYLHGGGFILGN--------LDTH----DRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSS------CSCEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCC------CCcEEEEECCCCcccCC--------hhhh----HHHHHHHHHHcCCEE
Confidence 4458899999888 899999999751 24999999998644322 1122 234667777 79999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc------eeE
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------FCC 786 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~------~~a 786 (958)
+.++++...++ .+...++|+.++++|+.++. .+|++||+|+|+|+||++|+.++.+.+++ +++
T Consensus 122 ~~~dyr~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~ 193 (326)
T 3ga7_A 122 IGIDYSLSPQA--------RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIA 193 (326)
T ss_dssp EEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEE
T ss_pred EEeeCCCCCCC--------CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceE
Confidence 99887644332 23466799999999999874 47999999999999999999999887653 899
Q ss_pred EEEeccCCCCCCCCCC--cccc------c--chhhhcH--HHHHhcCccc-----ccCCCCCCEEEEeeCCCCCCCCChH
Q 002164 787 GIARSGAYNRTLTPFG--FQNE------D--RTLWEAT--STYVEMSPFM-----SANKLKKPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~--~~~~------~--~~~~~~~--~~~~~~sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (958)
+++.+|+++....... +... . ...+... ......+|.. .+.+..+|+||+||+.|..+ .
T Consensus 194 ~vl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~----~ 269 (326)
T 3ga7_A 194 ILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI----D 269 (326)
T ss_dssp EEEESCCCSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH----H
T ss_pred EEEeccccccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH----H
Confidence 9999998764321100 0000 0 0000000 0001112221 23345679999999999874 5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhhcc
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~fl~~~l~~ 900 (958)
++.+++++|+..|+++++++||+++|.+... +...++++.+.+||.+++..
T Consensus 270 ~~~~~~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 270 DSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999998432 34578899999999999853
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=209.06 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=165.7
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
..+.++|.+. +|..+.+++|+|+++++.+ ++|+||++||++........+.... .++..+ ........+|+.|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~--~~Pvvv~lHG~g~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~vv 217 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDR--KYPLVVFLHGAGERGTDNYLQVAGN-RGAVVW--AQPRYQVVHPCFVL 217 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTS--CEEEEEEECCGGGCSSSSSHHHHSS-TTTTGG--GSHHHHTTSCCEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCC--CccEEEEECCCCCCCCchhhhhhcc-ccceee--cCccccccCCEEEE
Confidence 3567889988 9999999999999876544 5999999999764322211111100 011111 11223456889999
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+++++..++|..+.. .......+.|+.++++++.++..+|++||+|+|||+||++++.++.++|++|+++|+++|.
T Consensus 218 ~pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~ 297 (380)
T 3doh_A 218 APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGG 297 (380)
T ss_dssp EECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred EecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCC
Confidence 9888766665544321 1122456788899999999987799999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.+. ..+.+++ +|+|++||++|..+| +.++++++++|+..|.++++++||+
T Consensus 298 ~~~---------------------------~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~~ 348 (380)
T 3doh_A 298 GDV---------------------------SKVERIKDIPIWVFHAEDDPVVP--VENSRVLVKKLAEIGGKVRYTEYEK 348 (380)
T ss_dssp CCG---------------------------GGGGGGTTSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCh---------------------------hhhhhccCCCEEEEecCCCCccC--HHHHHHHHHHHHHCCCceEEEEecC
Confidence 420 1122233 899999999999999 9999999999999999999999999
Q ss_pred C---CccCCCcccHHHHHH--HHHHHHHHh
Q 002164 873 E---SHGYAARESIMHVLW--ETDRWLQKY 897 (958)
Q Consensus 873 ~---~H~~~~~~~~~~~~~--~i~~fl~~~ 897 (958)
+ +|.+.........+. .+++||.++
T Consensus 349 ~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 349 GFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp THHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 8 444433333445555 889999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=224.47 Aligned_cols=295 Identities=10% Similarity=0.021 Sum_probs=195.6
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.++++... ++..++|||||++|||++.. + +.+.||++.+ +..+
T Consensus 15 ~~~~~~~~-~~~~~~~~~DG~~la~~s~~----------------------~----------g~~~lw~~~~----g~~~ 57 (582)
T 3o4h_A 15 DVERLIAV-EKYSLQGVVDGDKLLVVGFS----------------------E----------GSVNAYLYDG----GETV 57 (582)
T ss_dssp HHHHHHHS-CEEEEEEEETTTEEEEEEEE----------------------T----------TEEEEEEEET----TEEE
T ss_pred HHHHHhcc-chheeecCCCCCeEEEEEcc----------------------C----------CceeEEEEcC----CCcE
Confidence 34455555 57889999999999998862 1 2445666633 6777
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc--CCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~--~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
+++... ...+..|+|||| +|+|+.+. ..++....||++++ +++.. +++.... ....+|+|||+.+
T Consensus 58 ~lt~~~-~~~~~~~~~spd--~~l~~~~~---~~g~~~~~l~~~~~~~~g~~~-~l~~~~~------~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 58 KLNREP-INSVLDPHYGVG--RVILVRDV---SKGAEQHALFKVNTSRPGEEQ-RLEAVKP------MRILSGVDTGEAV 124 (582)
T ss_dssp ECCSSC-CSEECEECTTCS--EEEEEEEC---STTSCCEEEEEEETTSTTCCE-ECTTSCS------BEEEEEEECSSCE
T ss_pred eeeccc-ccccccccCCCC--eEEEEecc---CCCCcceEEEEEeccCCCccc-cccCCCC------ceeeeeCCCCCeE
Confidence 887532 136889999999 68887652 12345678999998 66554 6765544 3367899999887
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCcccccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSL 337 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~ 337 (958)
++++.. ...++++++ +|+.++++.... .++
T Consensus 125 ~~~s~~------------------------------------------------~~~~~l~d~~~g~~~~l~~~~~-~~~ 155 (582)
T 3o4h_A 125 VFTGAT------------------------------------------------EDRVALYALDGGGLRELARLPG-FGF 155 (582)
T ss_dssp EEEEEC------------------------------------------------SSCEEEEEEETTEEEEEEEESS-CEE
T ss_pred EEEecC------------------------------------------------CCCceEEEccCCcEEEeecCCC-ceE
Confidence 776211 112345688 888888876522 788
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
.|||||++|++.+.+... ..+|++||+++++.+.|+... .....++|||||+.|+. .
T Consensus 156 ~~spDG~~la~~~~~~~~---------~~~i~~~d~~~g~~~~l~~~~-------------~~~~~~~~SpDG~~l~~-~ 212 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGE-------------GSFSSASISPGMKVTAG-L 212 (582)
T ss_dssp EEEEETTEEEEEEEEETT---------EEEEEEEETTTCCCEEECCSS-------------CEEEEEEECTTSCEEEE-E
T ss_pred EECCCCCEEEEEEEcCCC---------CeEEEEEcCCCCCceEeecCC-------------CccccceECCCCCEEEE-c
Confidence 999999999988865321 237999999988888887543 22367899999999883 2
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCcee--------eecCCceEEEEEeccccceEEEEEcCC
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS--------WCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~--------~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+. .....||++++ ++++.+.++..+..+..+. ||||| .|+++...++. .+||.+
T Consensus 213 ~~----------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~-~~l~~~--- 274 (582)
T 3o4h_A 213 ET----------AREARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGR-SAVFID--- 274 (582)
T ss_dssp EC----------SSCEEEEEECT---TTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTE-EEEEET---
T ss_pred cC----------CCeeEEEEEcC---CCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCc-EEEEEE---
Confidence 11 12347999996 6667664445555666777 99999 77777665543 667776
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
+ +... .....+.+ ++|| ||+.++..... ...+.||++|+++ +.++|
T Consensus 275 g---~~~~---~~~~~v~~------~~~s-dg~~l~~~s~~------------------~~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 275 G---ERVE---APQGNHGR------VVLW-RGKLVTSHTSL------------------STPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp T---EEEC---CCSSEEEE------EEEE-TTEEEEEEEET------------------TEEEEEEEETTCC-EEECC
T ss_pred C---Ceec---cCCCceEE------EEec-CCEEEEEEcCC------------------CCCCeEEEEcCCC-ceEEE
Confidence 2 1111 11122222 7789 99877655421 1234689998865 55555
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=205.71 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=156.0
Q ss_pred EEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
.+.+++.+ ..|..+.+.+|+|++++. +++|+||++||+...... +... ....+.++++||+|+.
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~p~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv~ 80 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAET---GKCPALYWLSGLTCTEQN-----------FISK-SGYHQSASEHGLVVIA 80 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGT---SCEEEEEEECCTTCCSHH-----------HHHH-SCCHHHHHHHTCEEEE
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCCC---CCCCEEEEEcCCCCCccc-----------hhhc-chHHHHhhcCCeEEEE
Confidence 34455553 478899999999987543 359999999997533211 1000 0114567889999999
Q ss_pred cCC--CCCCCCC----------Ccc---cchhhHH---HHHH-HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002164 718 GPT--TPIIGEG----------DEE---ANDRFVE---QLVA-CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (958)
Q Consensus 718 ~~~--~~~~G~G----------~~~---~~~~~~~---~~~~-D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (958)
++. ++..+.| .+. ....... .... ++.++++++.++..+|++||+|+|+|+||++|+.++.
T Consensus 81 ~d~~~rG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 160 (282)
T 3fcx_A 81 PDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICAL 160 (282)
T ss_dssp ECSCSSCCCC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred eccccCccccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHH
Confidence 776 3332211 110 0111111 1122 2335555666555588899999999999999999999
Q ss_pred hCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC---CCCCEEEEeeCCCCCCCCChHH--HHH
Q 002164 779 HAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---LKKPILLVHGEEDNNSGTLTMQ--SDR 853 (958)
Q Consensus 779 ~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---~~~P~Lii~G~~D~~v~~~~~~--~~~ 853 (958)
++|++|+++|+.+|+++....++........+......+...+|...+.+ +++|+|++||++|..+| ..+ +++
T Consensus 161 ~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~ 238 (282)
T 3fcx_A 161 KNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLL--DGQLLPDN 238 (282)
T ss_dssp TSTTTSSCEEEESCCCCGGGSHHHHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHH--TTSSCHHH
T ss_pred hCcccceEEEEeCCccCcccCchhHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccc--cchhhHHH
Confidence 99999999999999876432221100000000111122334455444444 47899999999999986 444 668
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++++|+..|.++++.++|+++|.+. .....+.+.++|+.++|.
T Consensus 239 ~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 239 FIAACTEKKIPVVFRLQEDYDHSYY---FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCceEEEECCCCCcCHH---HHHhhhHHHHHHHHHhhc
Confidence 9999999999999999999999873 234567788899998874
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=196.52 Aligned_cols=207 Identities=15% Similarity=0.102 Sum_probs=157.8
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.+++++.+|..+.++++.|++ ++.|+||++||..... ......+..|+++||.|++++
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~------~~~p~vv~~hG~~~~~---------------~~~~~~~~~l~~~g~~v~~~d 62 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQDIFGVN---------------AFMRETVSWLVDQGYAAVCPD 62 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS------CSEEEEEEECCTTBSC---------------HHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEecCCCCeEEEEEECCCC------CCCCEEEEEcCCCCCC---------------HHHHHHHHHHHhCCcEEEecc
Confidence 3467888899999999999863 2489999999963110 112245667888999999955
Q ss_pred CCCCCCCCCccc-----------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 720 TTPIIGEGDEEA-----------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 720 ~~~~~G~G~~~~-----------------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
+ +|+|.+.. ..........|+.++++++.++..++ ++++++|||+||.+++.++.+.|
T Consensus 63 ~---~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~- 137 (236)
T 1zi8_A 63 L---YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY- 137 (236)
T ss_dssp G---GGGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC-
T ss_pred c---cccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC-
Confidence 4 45544321 11123556889999999998886555 69999999999999999999997
Q ss_pred ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC
Q 002164 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (958)
++++++.+|.... ++...+.++++|+|+++|++|..+| ++.+.++++.++..+
T Consensus 138 -~~~~v~~~~~~~~------------------------~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~ 190 (236)
T 1zi8_A 138 -VDRAVGYYGVGLE------------------------KQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFGANP 190 (236)
T ss_dssp -SSEEEEESCSSGG------------------------GCGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHTTCT
T ss_pred -ccEEEEecCcccc------------------------cchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHHHhCC
Confidence 8999888774210 1234456678999999999999998 899999999998766
Q ss_pred CcEEEEEeCCCCccCCCc-------ccHHHHHHHHHHHHHHhhcc
Q 002164 863 ALCRLVILPFESHGYAAR-------ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 863 ~~~~~~~~p~~~H~~~~~-------~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++++++++++|.+... +....+.+.+.+||.+++..
T Consensus 191 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 191 -LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp -TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred -CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999987543 22457788999999998854
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=204.01 Aligned_cols=239 Identities=20% Similarity=0.194 Sum_probs=159.2
Q ss_pred cEEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
..+.+++.+ .+|..+.+.+|+|+++++. +++|+||++||++..... +.... .....++++||+|+
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~--~~~p~vv~lHG~~~~~~~-----------~~~~~-~~~~~~~~~g~~vv 81 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTG--AKVPVLYWLSGLTCSDEN-----------FMQKA-GAQRLAAELGIAIV 81 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTT--CCEEEEEEECCTTCCSSH-----------HHHHS-CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCC--CCccEEEEecCCCCChhH-----------Hhhcc-cHHHHHhhCCeEEE
Confidence 345666665 4789999999999987533 359999999997532211 10000 12345667899999
Q ss_pred EcCCCCCC-----------CCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 717 GGPTTPII-----------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 717 ~~~~~~~~-----------G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.++.++.. |.|.++.. ..+.....+ ++++++.++..+ +++++|+|||+||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~ 157 (280)
T 3i6y_A 82 APDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVN---ELPELIESMFPV-SDKRAIAGHSMGGHGALT 157 (280)
T ss_dssp EECSSCCSTTCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHT---HHHHHHHHHSSE-EEEEEEEEETHHHHHHHH
T ss_pred EeCCcccccccCcccccccccCccccccccCCCccchhhHHHHHHH---HHHHHHHHhCCC-CCCeEEEEECHHHHHHHH
Confidence 97653210 11111110 011222233 344455555434 689999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHH-HH
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQ-SD 852 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~-~~ 852 (958)
++.++|++|+++|+.+|.++....++........+......+...+|...+.+++ +|+|++||++|..++ ... ++
T Consensus 158 ~a~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~ 235 (280)
T 3i6y_A 158 IALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLA--EQLKPE 235 (280)
T ss_dssp HHHHCTTTCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHH--HHTCHH
T ss_pred HHHhCCccccEEEEeCCccccccCchHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCcccc--chhhHH
Confidence 9999999999999999987643222111000001111223344556666666555 899999999999986 544 88
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+++++|+..|+++++.++|+++|.+. .....+.++++|+.++|.
T Consensus 236 ~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 236 VLEAAASSNNYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 99999999999999999999999862 345667888999999874
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=207.41 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=166.3
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
..+..+.+++.+.+|..++++++.|++ .++.|+||++||++.... .+. ....++++||.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~-----~~~~p~vv~~HG~g~~~~-----------~~~-----~~~~~~~~G~~ 136 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNSG-----------DWN-----DKLNYVAAGFT 136 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC-----SSCEEEEEEECCTTCCSC-----------CSG-----GGHHHHTTTCE
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC-----CCCcCEEEEECCCCCCCC-----------Chh-----hhhHHHhCCcE
Confidence 345678899999999999999999975 235899999999753221 111 12267899999
Q ss_pred EEEcCCCCCCCCCCc-------------------ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 715 ILGGPTTPIIGEGDE-------------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 715 vl~~~~~~~~G~G~~-------------------~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
|+++++++..+.+.. .....++...+.|+.++++++..+..+|+++|+|+|+|+||.+++.
T Consensus 137 v~~~D~rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~ 216 (346)
T 3fcy_A 137 VVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLA 216 (346)
T ss_dssp EEEECCTTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEEcCCCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHH
Confidence 999666544322211 1112235577899999999999998889999999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCccccc-----------------chhhhcHHHHHhcCcccccCCCCCCEEEEee
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----------------RTLWEATSTYVEMSPFMSANKLKKPILLVHG 838 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G 838 (958)
++.+.|+ ++++|+.+|..+.....+...... .........+...++...+.++++|+|+++|
T Consensus 217 ~a~~~p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G 295 (346)
T 3fcy_A 217 CAALEPR-VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVG 295 (346)
T ss_dssp HHHHSTT-CCEEEEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEE
T ss_pred HHHhCcc-ccEEEECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEee
Confidence 9999987 999999998654211000000000 0000111223344566677889999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
++|..+| +..+.+++++++. +++++++|+++|.+. ..+.+.+.+||.+.
T Consensus 296 ~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 296 LMDQVCP--PSTVFAAYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp TTCSSSC--HHHHHHHHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred CCCCcCC--HHHHHHHHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 9999998 8888888877654 689999999999985 34577889998763
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=202.55 Aligned_cols=229 Identities=15% Similarity=0.142 Sum_probs=164.9
Q ss_pred CCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCc-CcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK-SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 636 ~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
.+..+.+++++.+|..+.++++.|++ .++.|+||++||++.. . ........|+++||.
T Consensus 53 ~~~~~~~~~~~~~g~~i~~~~~~P~~-----~~~~p~vv~~HG~~~~~~----------------~~~~~~~~l~~~g~~ 111 (318)
T 1l7a_A 53 GVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASYD----------------GEIHEMVNWALHGYA 111 (318)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCSG----------------GGHHHHHHHHHTTCE
T ss_pred CeEEEEEEEEccCCCEEEEEEEeeCC-----CCCccEEEEEcCCCCCCC----------------CCcccccchhhCCcE
Confidence 44578889998899999999999975 2358999999997422 1 011223477889999
Q ss_pred EEEcCCCCCCCCCCcccc--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 002164 715 ILGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (958)
Q Consensus 715 vl~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~ 774 (958)
|++++++ |+|.+... ..++...+.|+.++++|+.++..+|+++|+++|||+||.+++
T Consensus 112 v~~~d~r---g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 188 (318)
T 1l7a_A 112 TFGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTI 188 (318)
T ss_dssp EEEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHH
T ss_pred EEEecCC---CCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHH
Confidence 9996665 44443221 112467899999999999999888889999999999999999
Q ss_pred HHHHhCCCceeEEEEeccCCCCCCCC------CCcccccch------hhhc---HHHHHhcCcccccCCCCCCEEEEeeC
Q 002164 775 NLLAHAPHLFCCGIARSGAYNRTLTP------FGFQNEDRT------LWEA---TSTYVEMSPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 775 ~~a~~~p~~~~a~v~~~~~~~~~~~~------~~~~~~~~~------~~~~---~~~~~~~sp~~~~~~~~~P~Lii~G~ 839 (958)
.++.++|+ ++++|+.+|........ ..+...... .... .......++...+.++++|+|++||+
T Consensus 189 ~~a~~~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~ 267 (318)
T 1l7a_A 189 AAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGL 267 (318)
T ss_dssp HHHHHCSC-CSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEET
T ss_pred HHhccCCC-ccEEEecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEecc
Confidence 99999976 77777777754311000 000000000 0000 11222345666778889999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+|..+| ++++.+++++++. +++++++|+++|... .+..+.+.+||.++++
T Consensus 268 ~D~~~~--~~~~~~~~~~l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 268 IDKVTP--PSTVFAAYNHLET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp TCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCCCC--cccHHHHHhhcCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 999998 8999888887754 489999999999842 3567889999999885
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=188.68 Aligned_cols=208 Identities=19% Similarity=0.172 Sum_probs=160.5
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+..+.++++. +|.++.++++.|++ +.|+||++||+.... ..+ .....+..|+++||.|+
T Consensus 10 ~~~~~~~~~~-~g~~l~~~~~~p~~-------~~p~vv~~hG~~~~~-----------~~~--~~~~~~~~l~~~G~~v~ 68 (223)
T 2o2g_A 10 PQEYAVSVSV-GEVKLKGNLVIPNG-------ATGIVLFAHGSGSSR-----------YSP--RNRYVAEVLQQAGLATL 68 (223)
T ss_dssp CCEEEEEEEE-TTEEEEEEEECCTT-------CCEEEEEECCTTCCT-----------TCH--HHHHHHHHHHHHTCEEE
T ss_pred ceeeEEEEec-CCeEEEEEEecCCC-------CceEEEEecCCCCCC-----------Ccc--chHHHHHHHHHCCCEEE
Confidence 5577888887 99999999999864 379999999964211 100 11235667888999999
Q ss_pred EcCCCCCCCCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 717 GGPTTPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
.+ +.+|+|.+.... .......+|+.++++++..++.+|+++++++|||+||.+++.++.++|++++++|+.
T Consensus 69 ~~---d~~g~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~ 145 (223)
T 2o2g_A 69 LI---DLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSR 145 (223)
T ss_dssp EE---CSSCHHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred EE---cCCCcCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEe
Confidence 94 455666553321 334667899999999999998899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 002164 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (958)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (958)
+|..+.. ...+.++++|+|+++|++|..+| .. . .+.++..+.+++++++
T Consensus 146 ~~~~~~~-------------------------~~~~~~~~~P~l~i~g~~D~~~~--~~-~---~~~~~~~~~~~~~~~~ 194 (223)
T 2o2g_A 146 GGRPDLA-------------------------PSALPHVKAPTLLIVGGYDLPVI--AM-N---EDALEQLQTSKRLVII 194 (223)
T ss_dssp SCCGGGC-------------------------TTTGGGCCSCEEEEEETTCHHHH--HH-H---HHHHHHCCSSEEEEEE
T ss_pred CCCCCcC-------------------------HHHHhcCCCCEEEEEccccCCCC--HH-H---HHHHHhhCCCeEEEEe
Confidence 8864310 12345578999999999998875 33 3 3445555678999999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 871 PFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 871 p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++++|.+...+....+.+.+.+||.++|+
T Consensus 195 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 195 PRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 99999987666678889999999999873
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=204.59 Aligned_cols=222 Identities=16% Similarity=0.056 Sum_probs=155.6
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCc
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE 729 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~ 729 (958)
.+.+++|.|++ .++.|+||++|||++..++. .. ....+..|++ .||+|+.++++...++
T Consensus 66 ~i~~~~~~p~~-----~~~~p~vv~~HGGg~~~g~~--------~~----~~~~~~~la~~~g~~vv~~dyr~~p~~--- 125 (322)
T 3fak_A 66 GCAAEWVRAPG-----CQAGKAILYLHGGGYVMGSI--------NT----HRSMVGEISRASQAAALLLDYRLAPEH--- 125 (322)
T ss_dssp TEEEEEEECTT-----CCTTCEEEEECCSTTTSCCH--------HH----HHHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred CeEEEEEeCCC-----CCCccEEEEEcCCccccCCh--------HH----HHHHHHHHHHhcCCEEEEEeCCCCCCC---
Confidence 38889999975 23489999999986432211 11 1133455665 6999999777643321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEeccCCCCCCCCCCcc-
Q 002164 730 EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQ- 804 (958)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~- 804 (958)
.++..++|+.++++|+.++ .+|++||+|+|+|+||++|+.++.+.+++ ++++|+++|+++.......+.
T Consensus 126 -----~~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 199 (322)
T 3fak_A 126 -----PFPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKT 199 (322)
T ss_dssp -----CTTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHH
Confidence 2356779999999999998 67999999999999999999999876553 999999999887543211110
Q ss_pred --------ccc--chhhhcH-----HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 805 --------NED--RTLWEAT-----STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 805 --------~~~--~~~~~~~-----~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
... ...+... ......+|+...-+...|+||+||+.|.. ..++.+++++|+..|+++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~----~~~~~~~~~~l~~~g~~~~~~~ 275 (322)
T 3fak_A 200 RAEADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL----LDDSIKLDAKAKADGVKSTLEI 275 (322)
T ss_dssp TTTTCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCccCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc----HHHHHHHHHHHHHcCCCEEEEE
Confidence 000 0000000 00112344432222335999999999976 4688999999999999999999
Q ss_pred eCCCCccCCC----cccHHHHHHHHHHHHHHhhccCC
Q 002164 870 LPFESHGYAA----RESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 870 ~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
||+++|.+.. .+...++++.+.+||.++|....
T Consensus 276 ~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3fak_A 276 WDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAALA 312 (322)
T ss_dssp ETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred eCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcch
Confidence 9999998742 34467889999999999997543
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=204.43 Aligned_cols=239 Identities=17% Similarity=0.119 Sum_probs=166.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCC-CCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYD-PSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~-~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...+.+.+.+...+|..+...+| |+... ....++.|+||++||+++..+. .......+..|+++||
T Consensus 15 ~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~------------~~~~~~~~~~l~~~G~ 81 (283)
T 3bjr_A 15 LYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIP------------VAQAESLAMAFAGHGY 81 (283)
T ss_dssp --CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCC------------HHHHHHHHHHHHTTTC
T ss_pred cCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCC------------ccccHHHHHHHHhCCc
Confidence 33445678888889988888999 76421 0012358999999997532111 0011234567888999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc-------
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL------- 783 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~------- 783 (958)
.|++++++ |.|.+. ........|+.++++|+.++. .+|+++|+|+|||+||.+|+.++.+.|++
T Consensus 82 ~v~~~d~~---g~~~~~---~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 155 (283)
T 3bjr_A 82 QAFYLEYT---LLTDQQ---PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNV 155 (283)
T ss_dssp EEEEEECC---CTTTCS---SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred EEEEEecc---CCCccc---cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCC
Confidence 99996654 444431 012355678899999998863 47788999999999999999999999877
Q ss_pred ------eeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 784 ------FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 784 ------~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
++++|+.+|..+.... +.............+...++...+.++++|+|++||++|..+| +.++.++++.
T Consensus 156 ~~~~~~~~~~v~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p--~~~~~~~~~~ 230 (283)
T 3bjr_A 156 TPAMLKPNNVVLGYPVISPLLG---FPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVP--ATNTLAYATA 230 (283)
T ss_dssp CHHHHCCSSEEEESCCCCTTSB---C--------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSC--THHHHHHHHH
T ss_pred CcCCCCccEEEEcCCccccccc---cccccchHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCC--hHHHHHHHHH
Confidence 8999999998763211 1000000000001233456777778889999999999999999 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcc------------cHHHHHHHHHHHHHHh
Q 002164 858 LKGHGALCRLVILPFESHGYAARE------------SIMHVLWETDRWLQKY 897 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~~~------------~~~~~~~~i~~fl~~~ 897 (958)
++..+.+++++++++++|.+.... ....+.+.+.+||+++
T Consensus 231 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 231 LATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHTTCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHCCCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999764221 1246778888888764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-20 Score=191.77 Aligned_cols=227 Identities=19% Similarity=0.169 Sum_probs=159.6
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
+++.. +|.+++++++.|++. .++.|+||++||.+.. .........+..|+++||.|++ +
T Consensus 4 ~~~~~-~g~~l~~~~~~p~~~----~~~~p~vvl~HG~~~~-------------~~~~~~~~~~~~l~~~g~~vi~---~ 62 (251)
T 2wtm_A 4 MYIDC-DGIKLNAYLDMPKNN----PEKCPLCIIIHGFTGH-------------SEERHIVAVQETLNEIGVATLR---A 62 (251)
T ss_dssp EEEEE-TTEEEEEEEECCTTC----CSSEEEEEEECCTTCC-------------TTSHHHHHHHHHHHHTTCEEEE---E
T ss_pred eEEec-CCcEEEEEEEccCCC----CCCCCEEEEEcCCCcc-------------cccccHHHHHHHHHHCCCEEEE---e
Confidence 45554 899999999998752 1247999999996321 0011112345678889999999 5
Q ss_pred CCCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-
Q 002164 722 PIIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (958)
Q Consensus 722 ~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (958)
|.+|+|.+.... .......+|+.++++++.++..+ ++++++||||||.+++.++.++|++++++|+.+|......
T Consensus 63 D~~G~G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (251)
T 2wtm_A 63 DMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140 (251)
T ss_dssp CCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHH
Confidence 666888775432 22456788999999999776444 4899999999999999999999999999999988643100
Q ss_pred -----------CCCCcccccchhhh---c---HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC
Q 002164 799 -----------TPFGFQNEDRTLWE---A---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (958)
Q Consensus 799 -----------~~~~~~~~~~~~~~---~---~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (958)
.............. . .......++...+.++++|+|++||++|..+| ++.+.++++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~~~-- 216 (251)
T 2wtm_A 141 ARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVP--YEASVAFSKQYK-- 216 (251)
T ss_dssp HHHTEETTEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSC--HHHHHHHHHHSS--
T ss_pred HhhhhhccccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcC--hHHHHHHHHhCC--
Confidence 00000000000000 0 01111223334556789999999999999998 888888877663
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 862 GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 862 g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
.++++++|+++|.+ .+....+.+.+.+||.+++.
T Consensus 217 --~~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 --NCKLVTIPGDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp --SEEEEEETTCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred --CcEEEEECCCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 57999999999998 67788899999999998874
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=219.40 Aligned_cols=248 Identities=16% Similarity=0.204 Sum_probs=173.2
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH---HHHHHCCc
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV---LLWLARGF 713 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~G~ 713 (958)
+..+.++|++.||.+|++++|+|++. +++|+||++||..... ...+.....+..... +.|+++||
T Consensus 23 ~~~~~v~i~~~DG~~L~~~~~~P~~~-----~~~P~vl~~hgyg~~~-------~~~~~~~~~~~~~~~~~~~~la~~Gy 90 (615)
T 1mpx_A 23 YIKREVMIPMRDGVKLHTVIVLPKGA-----KNAPIVLTRTPYDASG-------RTERLASPHMKDLLSAGDDVFVEGGY 90 (615)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHH-------HTCSSCCSSHHHHSCGGGHHHHHTTC
T ss_pred CEEEEEEEECCCCCEEEEEEEeCCCC-----CCeeEEEEEcCCCCcc-------ccccccccccccccchhHHHHHhCCe
Confidence 45678899999999999999999762 3589999999742110 000000000000011 68999999
Q ss_pred EEEEcCCCCCCCCCCcccch-----hhHH---HHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 714 AILGGPTTPIIGEGDEEAND-----RFVE---QLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~-----~~~~---~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
+|+.+|++|..+.+...... .+.. ..++|+.++++||.++ +++| .||+++|+||||++++++++..|+++
T Consensus 91 ~Vv~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l 169 (615)
T 1mpx_A 91 IRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPAL 169 (615)
T ss_dssp EEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTE
T ss_pred EEEEECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCce
Confidence 99997666554433222111 0122 6789999999999999 7877 59999999999999999999888999
Q ss_pred eEEEEeccCCCCCC-CCC---Cc--------c--------------c--cc----------------------chhhhc-
Q 002164 785 CCGIARSGAYNRTL-TPF---GF--------Q--------------N--ED----------------------RTLWEA- 813 (958)
Q Consensus 785 ~a~v~~~~~~~~~~-~~~---~~--------~--------------~--~~----------------------~~~~~~- 813 (958)
+|+|+.+++.+... ..+ +. . . .. ...|++
T Consensus 170 ~a~v~~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (615)
T 1mpx_A 170 KVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKL 249 (615)
T ss_dssp EEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHH
T ss_pred EEEEecCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHH
Confidence 99999999988432 111 00 0 0 00 000110
Q ss_pred ------HHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc---EEEEEeCCCCccCCC---
Q 002164 814 ------TSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL---CRLVILPFESHGYAA--- 879 (958)
Q Consensus 814 ------~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~---~~~~~~p~~~H~~~~--- 879 (958)
.+.|.+.||+.++++ |++|+|++||..|.+ + ..++.++|++|+..|++ +++++.|. +|....
T Consensus 250 ~~~~~~d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~--~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~ 325 (615)
T 1mpx_A 250 TEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-D--MWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDG 325 (615)
T ss_dssp HHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-C--SSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCC
T ss_pred HhCCCcChhhhhcChhhhhhccCCCCCEEEeecccCcc-c--cccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccc
Confidence 133456788889999 999999999999997 7 78999999999998754 89999998 686511
Q ss_pred ---------ccc-HHHHHHHHHHHHHHhhccC
Q 002164 880 ---------RES-IMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 880 ---------~~~-~~~~~~~i~~fl~~~l~~~ 901 (958)
.+. .....+.+++||++||++.
T Consensus 326 ~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 326 SALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 111 1223577899999999865
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=200.70 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=158.4
Q ss_pred cEEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
..+.+++.+ ..|..+.+.+|+|+++++.+ ++|+||++||+...... +... ......++++||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~P~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv 79 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESN--KVPVLYWLSGLTCTDEN-----------FMQK-AGAFKKAAELGIAIV 79 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTB--CEEEEEEECCTTCCSHH-----------HHHH-SCCHHHHHHHTCEEE
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCC--CcCEEEEeCCCCCChhh-----------hhcc-hhHHHHHhhCCeEEE
Confidence 345666765 47889999999999876433 59999999997532211 1000 012345667899999
Q ss_pred EcCCCCC--C---------CCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002164 717 GGPTTPI--I---------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (958)
Q Consensus 717 ~~~~~~~--~---------G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (958)
.++.++. . |.|.++.. ..+.....++ ++.++.++..+ +++++|+|+|+||++|+.
T Consensus 80 ~~d~~~~g~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~ 155 (280)
T 3ls2_A 80 APDTSPRGDNVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNE---LPALIEQHFPV-TSTKAISGHSMGGHGALM 155 (280)
T ss_dssp ECCSSCCSTTSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTH---HHHHHHHHSSE-EEEEEEEEBTHHHHHHHH
T ss_pred EeCCcccccccccccccccccCCccccccccccccccccHHHHHHHH---HHHHHHhhCCC-CCCeEEEEECHHHHHHHH
Confidence 9764311 0 11211110 0122233333 33444444333 479999999999999999
Q ss_pred HHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCC----CCEEEEeeCCCCCCCCChHH-
Q 002164 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK----KPILLVHGEEDNNSGTLTMQ- 850 (958)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~----~P~Lii~G~~D~~v~~~~~~- 850 (958)
++.++|++|+++++.+|+++....++........+......+...+|...+.+++ +|+|++||++|..++ ...
T Consensus 156 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~ 233 (280)
T 3ls2_A 156 IALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLD--EQLK 233 (280)
T ss_dssp HHHHSTTTCSCEEEESCCSCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCC--CCCC
T ss_pred HHHhCchhheEEEEecCccCcccCcchhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccC--Cchh
Confidence 9999999999999999987643322111000001111223344556666665554 599999999999997 644
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+++++++|+..|+++++.++|+++|.+. .....+..+++|+.++|.
T Consensus 234 ~~~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 234 PQNLVAVAKQKDYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999863 234567788999999874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=185.61 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=150.3
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+++++.+| +++++++.|++ .++.|+||++||+++..+. .........+..|+++||.|+.
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-----IEKSVTGIICHPHPLHGGT----------MNNKVVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-----CCCSEEEEEECSCGGGTCC----------TTCHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-----CCCCCEEEEEcCCCCCCCc----------cCCchHHHHHHHHHHCCCEEEE
Confidence 356788999999 99999999864 2247999999995422111 0001112456678899999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
.+.+|+|.+...........+|+.++++++.++ .+.++++++|||+||.+++.++ .+| +++++|+.+|..+.
T Consensus 69 ---~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~- 140 (208)
T 3trd_A 69 ---FNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY- 140 (208)
T ss_dssp ---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS-
T ss_pred ---EecCCCCCCCCCccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc-
Confidence 455577776554333456789999999999987 4457999999999999999999 665 89999999887521
Q ss_pred CCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
+ ....+..+++|+|++||++|..+| ++.+++++++++.. ++++++++++|.+
T Consensus 141 -------------~----------~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~H~~ 192 (208)
T 3trd_A 141 -------------E----------GFASLTQMASPWLIVQGDQDEVVP--FEQVKAFVNQISSP---VEFVVMSGASHFF 192 (208)
T ss_dssp -------------G----------GGTTCCSCCSCEEEEEETTCSSSC--HHHHHHHHHHSSSC---CEEEEETTCCSSC
T ss_pred -------------C----------CchhhhhcCCCEEEEECCCCCCCC--HHHHHHHHHHccCc---eEEEEeCCCCCcc
Confidence 0 112344558999999999999999 88888888876553 7999999999998
Q ss_pred CCcccHHHHHHHHHHHH
Q 002164 878 AARESIMHVLWETDRWL 894 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl 894 (958)
... ..++.+.+.+||
T Consensus 193 ~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HGR--LIELRELLVRNL 207 (208)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHh
Confidence 532 356666666665
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=201.06 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=157.3
Q ss_pred EEEEEEEe-CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~-~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
.+.+++.+ ..|..+.+.+|+|++++ ..++|+||++||+...... +.... .....+.+.||+|+.
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~~-----------~~~~~-~~~~~~~~~g~~vv~ 79 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI---HEPCPVVWYLSGLTCTHAN-----------VMEKG-EYRRMASELGLVVVC 79 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG---TSCEEEEEEECCTTCCSHH-----------HHHHS-CCHHHHHHHTCEEEE
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC---CCCCCEEEEEcCCCCCccc-----------hhhcc-cHHHHHhhCCeEEEe
Confidence 45566654 47889999999998754 2359999999997432211 10000 023345567999999
Q ss_pred cCCCCCCCCCCcccch-------------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 002164 718 GPTTPIIGEGDEEAND-------------------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFM 772 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~-------------------------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~ 772 (958)
++.+ |+|.+.... .+..... .++++++.++..+|+++++|+|||+||++
T Consensus 80 ~d~~---g~G~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~i~l~G~S~GG~~ 153 (278)
T 3e4d_A 80 PDTS---PRGNDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVT---EELPALIGQHFRADMSRQSIFGHSMGGHG 153 (278)
T ss_dssp CCSS---CCSTTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHH---THHHHHHHHHSCEEEEEEEEEEETHHHHH
T ss_pred cCCc---ccCcccccccccccccCCccccccCCcCcccchhhHHHHHH---HHHHHHHHhhcCCCcCCeEEEEEChHHHH
Confidence 6654 443321110 1111122 24566666665678899999999999999
Q ss_pred HHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC--CCCEEEEeeCCCCCCCCChHH
Q 002164 773 TANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ 850 (958)
Q Consensus 773 a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~ 850 (958)
|+.++.++|++|+++++.+|+++....++........+......+...+|...+.++ .+|+|++||++|..++ ...
T Consensus 154 a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~ 231 (278)
T 3e4d_A 154 AMTIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLE--KGL 231 (278)
T ss_dssp HHHHHHHCTTTCSCEEEESCCSCGGGCTTTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHH--HHT
T ss_pred HHHHHHhCCcccceEEEeCCcccccCCccchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccc--cch
Confidence 999999999999999999998764433322111001111122334445555555444 4599999999999986 432
Q ss_pred -HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 851 -SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 851 -~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+++++|+..|.++++.++|+++|.+. .....+..+++|+.++|+
T Consensus 232 ~~~~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 232 RPWLFEEAIKGTDIGLTLRMHDRYDHSYY---FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp CTHHHHHHHTTSSCEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999863 234567788899988873
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-19 Score=189.28 Aligned_cols=259 Identities=12% Similarity=0.036 Sum_probs=180.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~~~~~~ 241 (958)
..|++|++.+ +..+.+..+ ...+..++|||||++|++.. ...|+++++++ ++..++.......
T Consensus 22 ~~i~~~d~~~----~~~~~~~~~--~~~v~~~~~spdg~~l~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRT----RKMRVVWQT--PELFEAPNWSPDGKYLLLNS----------EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTT----TEEEEEEEE--SSCCEEEEECTTSSEEEEEE----------TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred eeEEEEeCCC----CceeeeccC--CcceEeeEECCCCCEEEEEc----------CCeEEEEeCCCCCCceEeccccccc
Confidence 5899999855 555555543 34688999999999999964 44899999999 8888876544211
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
.+..++|+|||+.|++..... + ...+||.+++
T Consensus 86 ---~~~~~~~spdg~~l~~~~~~~--------------------------------------~-------~~~~l~~~~~ 117 (297)
T 2ojh_A 86 ---CNNDHGISPDGALYAISDKVE--------------------------------------F-------GKSAIYLLPS 117 (297)
T ss_dssp ---BCSCCEECTTSSEEEEEECTT--------------------------------------T-------SSCEEEEEET
T ss_pred ---cccceEECCCCCEEEEEEeCC--------------------------------------C-------CcceEEEEEC
Confidence 156899999999999872110 0 2457999998
Q ss_pred -CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 -DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 -~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
++..+.+.....+..+.|||||++|+++..... ...++.++++++..+.+.... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~-------------~~ 174 (297)
T 2ojh_A 118 TGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGE-------------GR 174 (297)
T ss_dssp TCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSS-------------SC
T ss_pred CCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCC-------------Cc
Confidence 777777776645677899999999998774421 114555556666666655432 23
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc--
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-- 478 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-- 478 (958)
+..+.|+|||+.|++.... .....||.++. .++..+.+......+..+.|+|||++|++......
T Consensus 175 ~~~~~~s~dg~~l~~~~~~----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSR----------TGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp EEEEEECTTSSEEEEEECT----------TSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cccceECCCCCEEEEEecC----------CCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 4678999999998875221 23446777774 56677777666666778999999999999876532
Q ss_pred -----cceEEEEEcCCCCCCCcEEEec--cCCccccCCCCCCceEeccCCceEEEEee
Q 002164 479 -----RRTRTWVISPGSKDVAPRILFD--RSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 479 -----~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
....|+++++.++ +...+.. .....+.. ++|+|||++|++...
T Consensus 242 ~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~------~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTMNS------PNWSPDGDEFAYVRY 291 (297)
T ss_dssp SCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTSCS------CCBCTTSSEEEEEEE
T ss_pred cccccCceEEEEEecCCC--CceeeeccCCCCccccc------ceECCCCCEEEEEEe
Confidence 2267999999885 3333332 22222222 679999999998874
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=217.41 Aligned_cols=251 Identities=14% Similarity=0.146 Sum_probs=175.0
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH-HHHHHCCcEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~v 715 (958)
+..+.++|++.||.+|++++|+|++. +++|+||+.||...... .........|... .... +.|+++||+|
T Consensus 35 ~~~~~v~i~~~DG~~L~~~l~~P~~~-----~~~PvIl~~hpyg~~~~---~~~~~~~~~~~~~-~~~~~~~la~~GyaV 105 (652)
T 2b9v_A 35 YIKREVMVPMRDGVKLYTVIVIPKNA-----RNAPILLTRTPYNAKGR---ANRVPNALTMREV-LPQGDDVFVEGGYIR 105 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHHH---TCSSTTCSSHHHH-SCGGGHHHHHTTCEE
T ss_pred cEEEEEEEECCCCcEEEEEEEecCCC-----CCccEEEEECCCCCCcc---ccccccccccccc-ccchHHHHHhCCCEE
Confidence 45678899999999999999999762 35899999997321100 0000000000000 0012 6899999999
Q ss_pred EEcCCCCCCCCCCcccch-----hhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 716 LGGPTTPIIGEGDEEAND-----RFV---EQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~-----~~~---~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
+.+|++|..+.+..+... .+. ...++|+.++++||.++ +++| .||+++|+||||++++.++++.|++++|
T Consensus 106 v~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka 184 (652)
T 2b9v_A 106 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKV 184 (652)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEE
T ss_pred EEEecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEE
Confidence 997776655544332211 112 26889999999999999 8887 5999999999999999999988899999
Q ss_pred EEEeccCCCCCC-CCC---Cccccc----------------------ch------------------------hhhc---
Q 002164 787 GIARSGAYNRTL-TPF---GFQNED----------------------RT------------------------LWEA--- 813 (958)
Q Consensus 787 ~v~~~~~~~~~~-~~~---~~~~~~----------------------~~------------------------~~~~--- 813 (958)
+|+.+++.|+.. ..+ +..... .. .|.+
T Consensus 185 ~v~~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (652)
T 2b9v_A 185 AAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHA 264 (652)
T ss_dssp EEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHH
T ss_pred EEecccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHh
Confidence 999999988542 111 000000 00 0110
Q ss_pred ----HHHHHhcCcccccCC--CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC--CcEEEEEeCCCCccCCC------
Q 002164 814 ----TSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAA------ 879 (958)
Q Consensus 814 ----~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~p~~~H~~~~------ 879 (958)
.+.|...+|..++++ |++|+|++||..|.+ + ..++.++|++|+..+ +++++++.|. +|....
T Consensus 265 ~p~~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~--~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~ 340 (652)
T 2b9v_A 265 HPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-D--MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTL 340 (652)
T ss_dssp CCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-C--SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEE
T ss_pred CCCCChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-c--cccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccC
Confidence 122455788888999 999999999999997 6 678999999999998 8999999987 797511
Q ss_pred -------cccHHHHHHHHHHHHHHhhccC
Q 002164 880 -------RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 880 -------~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
........+.+++||++||++.
T Consensus 341 ~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 341 GPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp TTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CccccccccchhhhhhHHHHHHHHHhCCC
Confidence 1112334678899999999865
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=200.36 Aligned_cols=236 Identities=17% Similarity=0.155 Sum_probs=166.6
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
..+..+.+++++.||..+.++++.|++ .+ .++.|+||++||+.... .. +....+..|+++||.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~--~~~~p~vv~~hG~~~~~-----------~~---~~~~~~~~l~~~G~~ 126 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RG--GDRLPAIVIGGPFGAVK-----------EQ---SSGLYAQTMAERGFV 126 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CC--SSCEEEEEEECCTTCCT-----------TS---HHHHHHHHHHHTTCE
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CC--CCCCCEEEEECCCCCcc-----------hh---hHHHHHHHHHHCCCE
Confidence 345678899999999999999999986 21 23589999999964211 01 111256778999999
Q ss_pred EEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 715 ILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 715 vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
|+.+++ +|+|.+.... ........|+.++++++.++..+|.++++++|||+||.+++.++.++| .++++|+.+
T Consensus 127 v~~~d~---~g~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~ 202 (367)
T 2hdw_A 127 TLAFDP---SYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTST 202 (367)
T ss_dssp EEEECC---TTSTTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred EEEECC---CCcCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEec
Confidence 999554 5666554321 225678899999999999998888899999999999999999999997 599999998
Q ss_pred cCCCC-----CCCC--------------------------CC----cc---ccc--------------------------
Q 002164 792 GAYNR-----TLTP--------------------------FG----FQ---NED-------------------------- 807 (958)
Q Consensus 792 ~~~~~-----~~~~--------------------------~~----~~---~~~-------------------------- 807 (958)
|.... .... +. .. ...
T Consensus 203 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (367)
T 2hdw_A 203 MYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGN 282 (367)
T ss_dssp CCCHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTC
T ss_pred cccccHHHhhhhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccc
Confidence 64210 0000 00 00 000
Q ss_pred chhhhcHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 808 RTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
.........+...++...+.+++ +|+|++||++|. + +.++.+++++ .+.+++++++|+++|..........+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~PvLii~G~~D~--~--~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~ 355 (367)
T 2hdw_A 283 AWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAH--S--RYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIP 355 (367)
T ss_dssp CCBTTTHHHHTTSCSCTTGGGGTTSCEEEEEETTCT--T--HHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSC
T ss_pred hhhhhhHHHhcCCChhHhHHhhcCCceEEEecCCCC--C--HHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHH
Confidence 00001123344556777788888 999999999998 6 7888888776 56789999999999984211111125
Q ss_pred HHHHHHHHHHhh
Q 002164 887 LWETDRWLQKYC 898 (958)
Q Consensus 887 ~~~i~~fl~~~l 898 (958)
.+.+.+||.++|
T Consensus 356 ~~~i~~fl~~~l 367 (367)
T 2hdw_A 356 FDRIAGFFDEHL 367 (367)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 788999999875
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=183.49 Aligned_cols=210 Identities=13% Similarity=0.091 Sum_probs=157.8
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+++++.+| .+.++++.|++-.+ .+.|+||++||++...+. .........+..|+++||.|+.
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~~---~~~~~vv~~HG~~~~~~~----------~~~~~~~~~~~~l~~~g~~v~~ 74 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDVA---VQPVTAIVCHPLSTEGGS----------MHNKVVTMAARALRELGITVVR 74 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSC---CCSEEEEEECSCTTTTCS----------TTCHHHHHHHHHHHTTTCEEEE
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCCc---cccCEEEEECCCCCcCCc----------ccchHHHHHHHHHHHCCCeEEE
Confidence 467889999888 89999999975211 237999999996422111 0001112456678889999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
++ .+|+|.+............|+.++++++.++. +.++++++|||+||.+++.++.+. +++++|+.+|..+..
T Consensus 75 ~d---~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~ 147 (220)
T 2fuk_A 75 FN---FRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 147 (220)
T ss_dssp EC---CTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred Ee---cCCCCCCCCCcccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccch
Confidence 44 55777665544444577899999999999884 667999999999999999999987 799999999875431
Q ss_pred CCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
. +. .+. ...|+|++||++|..+| ++.+.++++.++ .+++++++++++|.+
T Consensus 148 ~---------------------~~---~~~-~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~H~~ 197 (220)
T 2fuk_A 148 D---------------------FS---DVQ-PPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHFF 197 (220)
T ss_dssp C---------------------CT---TCC-CCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred h---------------------hh---hcc-cCCcEEEEECCCCcccC--HHHHHHHHHHhC---cCCcEEEeCCCCcee
Confidence 1 01 111 25799999999999998 888888887764 357999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHhhcc
Q 002164 878 AARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
.. ....+.+.+.+||.+++..
T Consensus 198 ~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 198 HR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp TT--CHHHHHHHHHHHHGGGCSS
T ss_pred hh--hHHHHHHHHHHHHHHHhhc
Confidence 64 3567888999999999853
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-19 Score=195.54 Aligned_cols=332 Identities=16% Similarity=0.135 Sum_probs=191.1
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce
Q 002164 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (958)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~ 179 (958)
..+++++..+.+..++| ||++|||+... .+...+ ....+||++++.+ +..
T Consensus 6 ~~~~~l~~~~~~~~~~~--dG~~i~~~~~~-------------------~~~~~~-----~~~~~l~~~d~~~----~~~ 55 (347)
T 2gop_A 6 WNEKTFAKFAYLSDPRT--KGELVAYVLTK-------------------ANLKDN-----KYENTIVIENLKN----NAR 55 (347)
T ss_dssp ----CCCCSCEEEEEEE--ETTEEEEEEEE-------------------EETTTT-----EEEEEEEEEETTT----CCE
T ss_pred CCcccceeeEEcccceE--CCcEEEEEEee-------------------cCcccC-----CccceEEEEeCCC----Cce
Confidence 34556777777888999 99999998753 111111 1236899999854 555
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
++| ..+..|.|||||++|||..... +++..+||++++++|+.++++..+. +..++|||||+.|+
T Consensus 56 ~~l------~~~~~~~~SpDg~~la~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~~wspdg~~l~ 119 (347)
T 2gop_A 56 RFI------ENATMPRISPDGKKIAFMRANE----EKKVSEIWVADLETLSSKKILEAKN------IRSLEWNEDSRKLL 119 (347)
T ss_dssp EEE------ESCEEEEECTTSSEEEEEEEET----TTTEEEEEEEETTTTEEEEEEEESE------EEEEEECTTSSEEE
T ss_pred EEc------ccCCCeEECCCCCEEEEEEecc----CCCcceEEEEECCCCceEEEEcCCC------ccceeECCCCCEEE
Confidence 666 2367899999999999987522 2356789999999999988876443 46899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCCcccccccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDP 339 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~ 339 (958)
|........ ... ..+....|
T Consensus 120 ~~~~~~~~~------------------------------------------------------~~~------~~~~~~~~ 139 (347)
T 2gop_A 120 IVGFKRRED------------------------------------------------------EDF------IFEDDVPA 139 (347)
T ss_dssp EEEECCCC---------------------------------------------------------------------CCC
T ss_pred EEEccCCCc------------------------------------------------------CCc------EEEcccce
Confidence 883221000 000 00112223
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
..||..+.... ...|++|++++++. +.++. + .+..+.||||| ++|...
T Consensus 140 ~~~g~~~~~~~--------------~~~l~~~d~~~~~~~~~l~~-~--------------~~~~~~~spdg--~~~~~~ 188 (347)
T 2gop_A 140 WFDDLGFFDGE--------------KTTFWIFDTESEEVIEEFEK-P--------------RFSSGIWHRDK--IVVNVP 188 (347)
T ss_dssp C---------C--------------EEEEEEEETTTTEEEEEEEE-E--------------TTCEEEEETTE--EEEEEE
T ss_pred eecCcccccCc--------------cceEEEEECCCCeEEeeecC-C--------------CcccccCCCCe--EEEEEe
Confidence 33443322111 11566666665555 44443 1 12356677777 554432
Q ss_pred eccCCCccccccc-CCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc----cceEEEEEcCCCCCC
Q 002164 419 TQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----RRTRTWVISPGSKDV 493 (958)
Q Consensus 419 ~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~~l~~~~~~~~~~ 493 (958)
.... .. ... ...||+++ +++.+.++.. ..+. .+||||++|+|...... ...+||+++ ++
T Consensus 189 ~~~~-~~---~~~~~~~l~~~d-----~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-- 252 (347)
T 2gop_A 189 HREI-IP---QYFKFWDIYIWE-----DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK-- 252 (347)
T ss_dssp CCCS-SC---CSSCCEEEEEEE-----TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS--
T ss_pred cccc-cc---cccccccEEEeC-----CCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CC--
Confidence 2100 00 001 23567665 3455666554 3333 34999999999875442 236899999 32
Q ss_pred CcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcc
Q 002164 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (958)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~ 573 (958)
+...++......+.. .+.|+ || +++..... ...+|| ++ +|+.++++...+.
T Consensus 253 ~~~~l~~~~~~~~~~-----~~~~s-dg--~~~~~~~~------------------~~~~l~-~~--~g~~~~~~~~~~~ 303 (347)
T 2gop_A 253 EVMGILDEVDRGVGQ-----AKIKD-GK--VYFTLFEE------------------GSVNLY-IW--DGEIKPIAKGRHW 303 (347)
T ss_dssp CEEESSTTCCSEEEE-----EEEET-TE--EEEEEEET------------------TEEEEE-EE--SSSEEEEECSSSE
T ss_pred ceEeccccCCcccCC-----ccEEc-Cc--EEEEEecC------------------CcEEEE-Ec--CCceEEEecCCCe
Confidence 334443322111110 15688 88 55544211 123577 77 4677777654322
Q ss_pred cccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecCCCCC
Q 002164 574 KYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPY 631 (958)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~~~~ 631 (958)
+. .++|++ .+++...+...|.++|.++ |+.++||.+|..+
T Consensus 304 -----v~-------~~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~~ 343 (347)
T 2gop_A 304 -----IM-------GFDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDPI 343 (347)
T ss_dssp -----EE-------EEEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTSTT
T ss_pred -----EE-------eeeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHhH
Confidence 11 235666 5778888888888999987 7788999887643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-18 Score=202.08 Aligned_cols=334 Identities=13% Similarity=0.119 Sum_probs=224.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCch--------hcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLE--------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
.+..++|||||++|+....+....++ .+..+...+..+.+.+++......+.+..|.+|+... ...+.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~ 298 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----QLLQT 298 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEE
Confidence 45678999999999987765332222 3344445556677777776555555556799999733 34455
Q ss_pred eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.++ ...+...+|+|||+.|+.... ...|.+|+..+.....+...... +..++|+|||+.|+..
T Consensus 299 ~~~h--~~~v~~~~~~~~~~~l~t~~~---------d~~i~~w~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 299 LTGH--SSSVWGVAFSPDGQTIASASD---------DKTVKLWNRNGQHLQTLTGHSSS-----VWGVAFSPDGQTIASA 362 (577)
T ss_dssp ECCC--SSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred EecC--CCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeeEEEeCCCCC-----EEEEEECCCCCEEEEE
Confidence 5443 346888999999999988652 45678888888777666543332 6689999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC-eeeecCCC-cccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~l~~~-~~~~~~~~ 339 (958)
. ....+.+++.++ ....+... ..+..++|
T Consensus 363 ~-------------------------------------------------~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 363 S-------------------------------------------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp E-------------------------------------------------TTSEEEEEETTCCEEEEEECCSSCEEEEEE
T ss_pred e-------------------------------------------------CCCEEEEEcCCCCEEEEecCCCCCeEEEEE
Confidence 1 123355666644 34444444 66788999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
||||++|+..+.+ +.|.+|+..+...+.+..+. ..+..+.|+||++.++..
T Consensus 394 s~dg~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~d~~~l~~~--- 444 (577)
T 2ymu_A 394 SPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVWGVAFSPDDQTIASA--- 444 (577)
T ss_dssp CTTSSCEEEEETT-------------SEEEEECTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE---
T ss_pred CCCCCEEEEEeCC-------------CEEEEEeCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 9999999987633 48999998877666655432 345678999999988763
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
+..+.|.+|+. ++.....+......+..++|||||+.|+....... |.+++.++ +.....
T Consensus 445 ----------~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~----i~iw~~~~---~~~~~~ 504 (577)
T 2ymu_A 445 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT----VKLWNRNG---QLLQTL 504 (577)
T ss_dssp ----------ETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE----EEEEETTS---CEEEEE
T ss_pred ----------cCCCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE----EEEEcCCC---CEEEEE
Confidence 44567889985 66666666767777888999999999987764432 44445443 333334
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
......+.. ++|||||++|+....+ ..|++||.++.....+...... +
T Consensus 505 ~~h~~~v~~------l~~s~dg~~l~s~~~d---------------------g~v~lwd~~~~~~~~~~~h~~~-----v 552 (577)
T 2ymu_A 505 TGHSSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRNGQLLQTLTGHSSS-----V 552 (577)
T ss_dssp ECCSSCEEE------EEECTTSSCEEEEETT---------------------SEEEEECTTSCEEEEEECCSSC-----E
T ss_pred eCCCCCEEE------EEEcCCCCEEEEEECc---------------------CEEEEEeCCCCEEEEEcCCCCC-----E
Confidence 444444443 7899999998876521 2589999754444444332221 2
Q ss_pred EeecCCCccccccccCCEEEE
Q 002164 580 VALMSDQTEGDLYLNQLKILT 600 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~ 600 (958)
. ..+|+|||+.|+.
T Consensus 553 ~-------~~~fs~dg~~l~s 566 (577)
T 2ymu_A 553 W-------GVAFSPDGQTIAS 566 (577)
T ss_dssp E-------EEEECTTSSCEEE
T ss_pred E-------EEEEcCCCCEEEE
Confidence 2 2578999987664
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=191.61 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=143.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (958)
.+.||++||... ++..| ...+..|+++||.|++ .|.+|+|.+... .......+.|+.+++
T Consensus 51 ~~~VlllHG~~~-----------s~~~~----~~la~~La~~Gy~Via---~Dl~GhG~S~~~~~~~~~~~~~~d~~~~~ 112 (281)
T 4fbl_A 51 RIGVLVSHGFTG-----------SPQSM----RFLAEGFARAGYTVAT---PRLTGHGTTPAEMAASTASDWTADIVAAM 112 (281)
T ss_dssp SEEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEEECCCCC-----------CHHHH----HHHHHHHHHCCCEEEE---ECCCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 466889999431 11111 2457789999999999 666788887542 223456789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----------CCCc-------ccc---
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PFGF-------QNE--- 806 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----------~~~~-------~~~--- 806 (958)
++|.+.. ++++|+||||||.+++.++.++|++++++|++++....... .... ...
T Consensus 113 ~~l~~~~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T 4fbl_A 113 RWLEERC----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 188 (281)
T ss_dssp HHHHHHC----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCC
T ss_pred HHHHhCC----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHH
Confidence 9997753 58999999999999999999999999999999986542210 0000 000
Q ss_pred ----cchhhhcHHHHHhc--CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 807 ----DRTLWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 807 ----~~~~~~~~~~~~~~--sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
...++.....+... .....+.++++|+|++||++|..+| ++.++++++.+.. .+++++++|++||.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e 264 (281)
T 4fbl_A 189 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVP--PHNGELIYNGIGS--TEKELLWLENSYHVATLD 264 (281)
T ss_dssp CCCCSEEEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSC--THHHHHHHHHCCC--SSEEEEEESSCCSCGGGS
T ss_pred HhhhccCchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcC--HHHHHHHHHhCCC--CCcEEEEECCCCCcCccc
Confidence 00001111111000 0113457789999999999999999 9999999887753 468999999999987555
Q ss_pred ccHHHHHHHHHHHHHHh
Q 002164 881 ESIMHVLWETDRWLQKY 897 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~~ 897 (958)
.+.+.+.+.|.+||++|
T Consensus 265 ~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 265 NDKELILERSLAFIRKH 281 (281)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 55778899999999986
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=196.45 Aligned_cols=234 Identities=17% Similarity=0.131 Sum_probs=165.6
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCc
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGF 713 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~ 713 (958)
..+..+.+++++.+|..+.+++|.|.+ ++.|+||++|||++..+. ...+ ...+..|+ +.||
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~------~~~p~vv~~HGgG~~~g~--------~~~~----~~~~~~la~~~g~ 117 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP------TPAPVVVYCHAGGFALGN--------LDTD----HRQCLELARRARC 117 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC------SSEEEEEEECCSTTTSCC--------TTTT----HHHHHHHHHHHTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC------CCCcEEEEECCCcCccCC--------hHHH----HHHHHHHHHHcCC
Confidence 345678899999999999999999974 248999999998643321 1111 23455666 4699
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeE
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCC 786 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a 786 (958)
.|+.++|+...++ .+...++|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+.++ .+++
T Consensus 118 ~vv~~dyr~~p~~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~ 189 (317)
T 3qh4_A 118 AVVSVDYRLAPEH--------PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIF 189 (317)
T ss_dssp EEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCE
T ss_pred EEEEecCCCCCCC--------CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeE
Confidence 9999887644332 2356788999999999986 45788999999999999999999987544 4999
Q ss_pred EEEeccCCCCCCCCCCccccc---------chhhhcHHH----HHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHHH
Q 002164 787 GIARSGAYNRTLTPFGFQNED---------RTLWEATST----YVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~ 851 (958)
+++++|+++............ ...|..... ....+|... ..++ .|+||+||++|..+ .++
T Consensus 190 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~----~~~ 264 (317)
T 3qh4_A 190 QLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFR----DEV 264 (317)
T ss_dssp EEEESCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTH----HHH
T ss_pred EEEECceecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCc----hhH
Confidence 999999887541100000000 011111000 001122211 1222 49999999999874 578
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCC----CcccHHHHHHHHHHHHHHhhc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYA----ARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~----~~~~~~~~~~~i~~fl~~~l~ 899 (958)
.+++++|+..|+++++++||+++|.+. ..+...++++.+.+||.++|.
T Consensus 265 ~~~a~~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 265 LDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999863 235567889999999999874
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=199.78 Aligned_cols=277 Identities=13% Similarity=0.046 Sum_probs=168.3
Q ss_pred CEEEEEEecCCCCceEEEEECCCCCeeEeecCC--CCCCC---CCCCcEEEEEEEeCCCeEEEEEEEecCCC-CCCCCCC
Q 002164 596 LKILTSKESKTENTQYYIQSWPDKKSCQITDFP--HPYPQ---LASLQKELIKYQRKDGVQLSATLYLPPGY-DPSKDGP 669 (958)
Q Consensus 596 ~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~~--~~~~~---~~~~~~~~~~~~~~dg~~l~~~l~~P~~~-~~~~~~~ 669 (958)
..+++...+...+...+++. .+|++.++.... .+.+. ...+..+.+.+.. +..+.+.+|+|++. .+ .++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~--~~~ 82 (338)
T 2o7r_A 8 TTGSSDPNTNLLKYLPIVLN-PDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYN--SAK 82 (338)
T ss_dssp ----------CTTTCSCEEC-TTSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGS--SCC
T ss_pred CceeeccCcccccccceEEC-CCCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcC--CCC
Confidence 34555444444444344444 356555532211 11111 2345677788875 55677889999753 11 235
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.|+||++|||++..+... . ......+..|+ ++||.|+.+++++ .+.. .....++|+.++++
T Consensus 83 ~p~vv~~HGgg~~~~~~~--------~--~~~~~~~~~la~~~g~~vv~~d~rg---~~~~-----~~~~~~~d~~~~~~ 144 (338)
T 2o7r_A 83 LPLVVYFHGGGFILFSAA--------S--TIFHDFCCEMAVHAGVVIASVDYRL---APEH-----RLPAAYDDAMEALQ 144 (338)
T ss_dssp EEEEEEECCSTTTSCCTT--------B--HHHHHHHHHHHHHHTCEEEEEECCC---TTTT-----CTTHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCcCCCCC--------c--hhHHHHHHHHHHHCCcEEEEecCCC---CCCC-----CCchHHHHHHHHHH
Confidence 899999999865432211 0 00123456677 7899999966654 3322 22467889999999
Q ss_pred HHHHcC------CCCCCcEEEEEeChHHHHHHHHHHhCCC--------ceeEEEEeccCCCCCCCCCC--------c-c-
Q 002164 749 EVVRRG------VAHPSKIAVGGHSYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLTPFG--------F-Q- 804 (958)
Q Consensus 749 ~l~~~~------~~d~~~i~l~G~S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~~~~--------~-~- 804 (958)
|+.++. .+|+++++|+|||+||.+|+.++.+.|+ +++++|+.+|.++....... . .
T Consensus 145 ~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
T 2o7r_A 145 WIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPT 224 (338)
T ss_dssp HHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSCH
T ss_pred HHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccCH
Confidence 999863 2677899999999999999999999877 89999999998663321000 0 0
Q ss_pred cccchhhhcH------HHHHhcCccc---------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 805 NEDRTLWEAT------STYVEMSPFM---------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 805 ~~~~~~~~~~------~~~~~~sp~~---------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
......|... ......+|+. .+.++.+|+||+||++|..++ .+.+++++|+..+.++++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~----~~~~~~~~l~~~~~~~~~~~ 300 (338)
T 2o7r_A 225 FVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID----RQMELAERLEKKGVDVVAQF 300 (338)
T ss_dssp HHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH----HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH----HHHHHHHHHHHCCCcEEEEE
Confidence 0000111100 0000012221 112245699999999998863 56788999999999999999
Q ss_pred eCCCCccCCC--cccHHHHHHHHHHHHHHhhc
Q 002164 870 LPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 870 ~p~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (958)
+++++|.+.. .+....+.+.+.+||.+++.
T Consensus 301 ~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 301 DVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp ESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred ECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 9999998742 33447788999999988764
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=192.22 Aligned_cols=234 Identities=16% Similarity=0.160 Sum_probs=163.7
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-Cc
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GF 713 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~ 713 (958)
.....+.+++++.+| .+.+++|.|++. .++.|+||++|||++..+ +...+ ...+..|+++ ||
T Consensus 44 ~~~~~~~~~i~~~~g-~l~~~~~~P~~~----~~~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~ 106 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR-TLKVRMYRPEGV----EPPYPALVYYHGGSWVVG--------DLETH----DPVCRVLAKDGRA 106 (310)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEECTTC----CSSEEEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHTS
T ss_pred CcceEEEEEeccCCC-eEEEEEEecCCC----CCCCCEEEEECCCccccC--------ChhHh----HHHHHHHHHhcCC
Confidence 345678899998777 899999999753 234899999999864322 11122 2456677775 99
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeE
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCC 786 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a 786 (958)
.|+.++++ |.|.. .+.....|+.++++|+.++. .+|+++|+|+|+|+||.+|+.++.+.|+ ++++
T Consensus 107 ~v~~~d~r---g~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~ 178 (310)
T 2hm7_A 107 VVFSVDYR---LAPEH-----KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAF 178 (310)
T ss_dssp EEEEECCC---CTTTS-----CTTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEeCCC---CCCCC-----CCCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceE
Confidence 99996665 44432 12456789999999999874 3678899999999999999999987765 6999
Q ss_pred EEEeccCCCCC--CCCCCccc-ccc---------hhhhc----HH--HHHhcCcccc--cCCCCCCEEEEeeCCCCCCCC
Q 002164 787 GIARSGAYNRT--LTPFGFQN-EDR---------TLWEA----TS--TYVEMSPFMS--ANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 787 ~v~~~~~~~~~--~~~~~~~~-~~~---------~~~~~----~~--~~~~~sp~~~--~~~~~~P~Lii~G~~D~~v~~ 846 (958)
+|+++|..+.. .....+.. ... ..+.. .. .....+|+.. +..+ .|+||+||++|..+
T Consensus 179 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~-- 255 (310)
T 2hm7_A 179 QLLIYPSTGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR-- 255 (310)
T ss_dssp EEEESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--
T ss_pred EEEEcCCcCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--
Confidence 99999987754 11000000 000 00000 00 0001233321 2233 49999999999873
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhh
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l 898 (958)
.++.+++++|+..|.+++++++|+++|.+.. .+....+.+.+.+||.+++
T Consensus 256 --~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 256 --DVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 309 (310)
T ss_dssp --HHHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999998743 2445778899999999886
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=190.01 Aligned_cols=234 Identities=18% Similarity=0.128 Sum_probs=163.7
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCc
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGF 713 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~ 713 (958)
..+..+.++++..+| .+.+++|.|.+ .++.|+||++|||++..+ +...+ ...+..|++ .||
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~-----~~~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~La~~~g~ 122 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT-----QGPYGVLVYYHGGGFVLG--------DIESY----DPLCRAITNSCQC 122 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS-----CSCCCEEEEECCSTTTSC--------CTTTT----HHHHHHHHHHHTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC-----CCCCcEEEEECCCccccC--------ChHHH----HHHHHHHHHhcCC
Confidence 345678899988777 89999999975 234799999999864322 21222 234567776 499
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCC-C-CCCcEEEEEeChHHHHHHHHHHhCCCce---eEEE
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV-A-HPSKIAVGGHSYGAFMTANLLAHAPHLF---CCGI 788 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~-~-d~~~i~l~G~S~GG~~a~~~a~~~p~~~---~a~v 788 (958)
.|+.++++ |.|.+. ++..++|+.++++|+.++.. . |+++|+|+|+|+||.+|+.++.+.|++. +++|
T Consensus 123 ~Vv~~Dyr---g~~~~~-----~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~v 194 (323)
T 3ain_A 123 VTISVDYR---LAPENK-----FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQV 194 (323)
T ss_dssp EEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred EEEEecCC---CCCCCC-----CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEE
Confidence 99996664 554432 24567899999999988631 1 7899999999999999999999887665 8999
Q ss_pred EeccCCCCCCCCCCcc--------ccc--chhhhc----HH--HHHhcCcccc-cCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 789 ARSGAYNRTLTPFGFQ--------NED--RTLWEA----TS--TYVEMSPFMS-ANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~--------~~~--~~~~~~----~~--~~~~~sp~~~-~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
+++|..+.......+. ... ...|.. .. .....+|+.. +..+ .|+||++|++|.. ..++
T Consensus 195 l~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l----~~~~ 269 (323)
T 3ain_A 195 LIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPL----RDQG 269 (323)
T ss_dssp EESCCCSCCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTT----HHHH
T ss_pred EEeccccCCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCcc----HHHH
Confidence 9999876432210000 000 000100 00 0012234332 2222 4999999999987 4578
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhhc
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (958)
.+++++|+..|+++++++||+++|.+.. .+....+.+.+.+||.+++.
T Consensus 270 ~~~a~~l~~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 270 EAYANKLLQSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999753 24457888999999999875
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=193.72 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=162.0
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCC------------CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCc
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDP------------SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS 702 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~------------~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~ 702 (958)
..+..+.+.+.. +..+.+.+|+|++... ...++.|+||++|||++..+.. .. ....
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~--------~~--~~~~ 135 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSA--------NS--AIYD 135 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCT--------TB--HHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCC--------cc--hhHH
Confidence 345567777765 5568889999986420 0124589999999986533211 11 0012
Q ss_pred HHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeChHHHHHHHH
Q 002164 703 TSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG----VAHPS-KIAVGGHSYGAFMTANL 776 (958)
Q Consensus 703 ~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~----~~d~~-~i~l~G~S~GG~~a~~~ 776 (958)
..+..|+ ++||+|+.+++++ .+.. .+...++|+.++++|+.++. .+|++ +|+|+|||+||.+|+.+
T Consensus 136 ~~~~~la~~~g~~vv~~d~rg---~~~~-----~~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~ 207 (351)
T 2zsh_A 136 TLCRRLVGLCKCVVVSVNYRR---APEN-----PYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207 (351)
T ss_dssp HHHHHHHHHHTSEEEEECCCC---TTTS-----CTTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCCC---CCCC-----CCchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHH
Confidence 3456777 7899999977654 3322 23466789999999999864 47899 99999999999999999
Q ss_pred HHhCCC---ceeEEEEeccCCCCCCCCCCcc--------c--ccchhhhcH------HHHHhcCcc----cccCCCCC-C
Q 002164 777 LAHAPH---LFCCGIARSGAYNRTLTPFGFQ--------N--EDRTLWEAT------STYVEMSPF----MSANKLKK-P 832 (958)
Q Consensus 777 a~~~p~---~~~a~v~~~~~~~~~~~~~~~~--------~--~~~~~~~~~------~~~~~~sp~----~~~~~~~~-P 832 (958)
+.+.|+ +++++|+++|.++......... . .....|... ......+|+ ..+.++++ |
T Consensus 208 a~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP 287 (351)
T 2zsh_A 208 ALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPK 287 (351)
T ss_dssp HHHHHTTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCE
T ss_pred HHHhhccCCCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCC
Confidence 999887 8999999999876332100000 0 000011100 000011222 23445565 9
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHH
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQK 896 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~---~~~~~~~~~~i~~fl~~ 896 (958)
+||+||++|..+ ..+.+++++|+..|.+++++++++++|.+.. .+....+.+.+.+||++
T Consensus 288 ~Lii~G~~D~~~----~~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 288 SLVVVAGLDLIR----DWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEETTSTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCcch----HHHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 999999999875 4678899999999999999999999998754 25667888899999875
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-20 Score=196.62 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=153.2
Q ss_pred EEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
.+.+++.+. .|..+.+.+|+|++++ ..++|+||++||++..... +... ......++++||+|+.
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~~~-----------~~~~-~~~~~~~~~~g~~vv~ 86 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE---NRPLGVIYWLSGLTCTEQN-----------FITK-SGFQRYAAEHQVIVVA 86 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT---CCCEEEEEEECCTTCCSHH-----------HHHH-SCTHHHHHHHTCEEEE
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC---CCCCCEEEEEcCCCCCccc-----------hhhc-ccHHHHHhhCCeEEEE
Confidence 444555544 6889999999999865 2359999999997532211 1000 0123456778999999
Q ss_pred cCCC--CCC---------CCCCcccc----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002164 718 GPTT--PII---------GEGDEEAN----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (958)
Q Consensus 718 ~~~~--~~~---------G~G~~~~~----------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (958)
++.. +.. |.|.++.. ..+.....+++ +.++.+.. .++++++|+|+||||++|+.+
T Consensus 87 ~d~~~rg~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~ 162 (283)
T 4b6g_A 87 PDTSPRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNEL---PRLIEKHF-PTNGKRSIMGHSMGGHGALVL 162 (283)
T ss_dssp ECSSCCSTTSCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHH---HHHHHHHS-CEEEEEEEEEETHHHHHHHHH
T ss_pred eccccccccccccccccccCCCcccccCccCcccchhhHHHHHHHHH---HHHHHHhC-CCCCCeEEEEEChhHHHHHHH
Confidence 7642 111 22222110 01122223343 34444442 246899999999999999999
Q ss_pred HHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC--CCCEEEEeeCCCCCCCCChHH-HHH
Q 002164 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ-SDR 853 (958)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~-~~~ 853 (958)
+.++|++|+++++.+|+++....++........+......+...+|...+.++ .+|+|++||+.|..++ ... +.+
T Consensus 163 a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~ 240 (283)
T 4b6g_A 163 ALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLP--TQLRTED 240 (283)
T ss_dssp HHHHGGGCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHH--HHTCHHH
T ss_pred HHhCCccceeEEEECCccccccCcchhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCc--chhhHHH
Confidence 99999999999999998764322211000000011122233445555544444 3599999999999876 422 889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++++|+..|+++++.++||++|.+. .....+..+++|+.++|+
T Consensus 241 ~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 241 FIETCRAANQPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHHHHHHTCCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999862 334567788999988763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=206.98 Aligned_cols=318 Identities=14% Similarity=0.074 Sum_probs=200.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
..+..++||+| +++|+..+ +..+.. ..||++ . . + +..++|+...
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~---------------------~~~~~~------~~l~~~-~-~-~--~~~~~l~~~~-- 67 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPR---------------------PAEAGR------ATLVRR-R-A-D--GAEESALPAP-- 67 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEE---------------------TTTTTE------EEEEEE-C-T-T--SCEEESSCTT--
T ss_pred CccceeEEcCC--eEEEEecC---------------------cccCCc------EEEEEE-C-C-C--CCcceeCCCC--
Confidence 45778889965 68887753 111121 256665 2 2 2 5566776432
Q ss_pred Cccc---------ceeec--CCCCe-EEEEEeeccccCCCCCceEEEEEcC--C-CceeeccCCCCccccccccceEEec
Q 002164 189 AKLN---------FVTWS--QDGKH-LAFSIRIDAEDSSSSKLRVWVADVD--T-GKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 189 ~~~~---------~~~wS--PDG~~-iaf~~~~~~~~~~~~~~~l~~~~~~--~-g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
..+. .+.|| |||++ |+|+.. ...+||+++++ + ++.++|+..+.......+..++|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~--------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 68 WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF--------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--------TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred ccccccccccCCccceeeeecCCCeEEEEEEC--------CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 2333 56676 99999 999753 15689999998 6 8889998743110011156899999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C------Ceee
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D------GTVK 326 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~------g~~~ 326 (958)
||+.|+++..+.... .+. ....+||++++ + |+.+
T Consensus 140 Dg~~l~~~~~~~~~~--------------------------------~~~-------~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 140 ERGEVWCMAEEFTGE--------------------------------GPS-------DVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TTTEEEEEEEEECSS--------------------------------STT-------CEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCCEEEEEEecccCC--------------------------------CCC-------CceeEEEEEECCCCccccCCcee
Confidence 999999883211000 000 03467999999 7 7888
Q ss_pred ecC-CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-Cc---eEEEeccCCccccCcccccccccC
Q 002164 327 EIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GI---FVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 327 ~l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~---~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
.++ .+ ..+..++|||||++|+|.+...+.. .....+|++||++ ++ ..+.++... ...
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~-----~~~~~~i~~~d~~~~g~~~~~~~l~~~~------------~~~ 243 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM-----PWEGTELKTARVTEDGRFADTRTLLGGP------------EEA 243 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCC-----TTTCEEEEEEEECTTSCEEEEEEEEEET------------TBC
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCC-----CCCCcEEEEEEECCCCcccccEEeCCCC------------Cce
Confidence 888 65 6678899999999999998553210 0012489999998 45 556655421 023
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecccc---------CceeeecCCceEE
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---------GGISWCDDSLALV 471 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~---------~~~~~spDg~~l~ 471 (958)
...+.|||||+ ++|..+. +....||++++ ++++.++++...... ..++|+|||+.+
T Consensus 244 ~~~~~~spdg~-l~~~~~~----------~~~~~l~~~~~---~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~- 308 (662)
T 3azo_A 244 IAQAEWAPDGS-LIVATDR----------TGWWNLHRVDP---ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA- 308 (662)
T ss_dssp EEEEEECTTSC-EEEEECT----------TSSCEEEEECT---TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE-
T ss_pred EcceEECCCCe-EEEEECC----------CCCeEEEEEEC---CCCceeecccccccccCccccccCceEeEeCCCEEE-
Confidence 46789999999 7765322 22347999985 566777775544433 345666777644
Q ss_pred EEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe-ccCCceEEEEeeeccCCCcEEEEccCCCCCCCC
Q 002164 472 YESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (958)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (958)
|.... ...+||.++++++ +...+... ...+ ..+ ++||+.+++..... ..
T Consensus 309 ~~~~~--~~~~l~~~d~~~~--~~~~l~~~-~~~~--------~~~~s~~~~~~~~~~~~~-----------------~~ 358 (662)
T 3azo_A 309 VVHGK--GAAVLGILDPESG--ELVDAAGP-WTEW--------AATLTVSGTRAVGVAASP-----------------RT 358 (662)
T ss_dssp EEEBS--SSCEEEEEETTTT--EEEECCSS-CCEE--------EEEEEEETTEEEEEEEET-----------------TE
T ss_pred EEEEc--CccEEEEEECCCC--cEEEecCC-CCeE--------EEEEecCCCEEEEEEcCC-----------------CC
Confidence 44444 3478999998874 33333221 1111 123 78888888776421 12
Q ss_pred CCeEEEEECCCCceEEEecCC
Q 002164 551 IPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~~~ 571 (958)
...||++|+++++.++|+...
T Consensus 359 ~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 359 AYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp EEEEEEEETTTCCEEEEESCC
T ss_pred CCEEEEEECCCCceEEeecCC
Confidence 346999999999998887654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=202.59 Aligned_cols=332 Identities=11% Similarity=0.066 Sum_probs=203.9
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
++.+++..+....+ +|||++++|.... .+... ..||+.+..+ +..+
T Consensus 66 ~~~~~~~~~~~~~p--~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~~----~~~~ 111 (710)
T 2xdw_A 66 RMTELYDYPKYSCH--FKKGKRYFYFYNT----------------------GLQNQ------RVLYVQDSLE----GEAR 111 (710)
T ss_dssp HHHHHHCSCEECCC--EEETTEEEEEEEC----------------------SSCSS------CEEEEESSTT----SCCE
T ss_pred HHHHhhccccCCCC--EEECCEEEEEEEc----------------------CCceE------EEEEEEcCCC----CCcE
Confidence 45666766556666 4999999999874 11111 2567766532 3444
Q ss_pred eecc---CCCCC--cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 181 EIQG---FPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 181 ~lt~---~~~~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
.|.. +..+. .+..++|||||++|||..+.. ++...+||++|+++|+..+++..... +..++|||||
T Consensus 112 ~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~----G~~~~~i~v~d~~tg~~~~~~~~~~~-----~~~~~wspDg 182 (710)
T 2xdw_A 112 VFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVLERVK-----FSCMAWTHDG 182 (710)
T ss_dssp EEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEEEEEC-----SCCEEECTTS
T ss_pred EEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCcccccCcc-----cceEEEEeCC
Confidence 3321 12222 577899999999999988633 44456999999999998775432211 4579999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee--eecCCC-
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP- 331 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~l~~~- 331 (958)
+.|+|+......... .+.. ... ....+||++++ ++.. +.+...
T Consensus 183 ~~l~~~~~~~~~~~~------~~~~-------------------~~~--------~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKS------DGTE-------------------TST--------NLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp SEEEEEECCCCSSCC------SSSC-------------------CCC--------CCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CEEEEEEECCccccc------cccc-------------------ccc--------CCCCEEEEEECCCCcccceEEeccC
Confidence 999998543321100 0000 000 02356999999 6642 333222
Q ss_pred ---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC------c--eEEEeccCCccccCcccccccccC
Q 002164 332 ---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG------I--FVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 332 ---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~------~--~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
.....+.|||||++|++.+.... ....+++++|+++ + ..+.|+.... .
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-------------~ 288 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKLIDNFE-------------G 288 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-------------S
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccC--------CCccEEEEEECcccccccCCccceEEeeCCCC-------------c
Confidence 23568899999999999985421 1135899999986 4 4555554221 1
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC---ceEEEeecc--ccCceeeecCCceEEEEEe
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDL--RYGGISWCDDSLALVYESW 475 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~--~~~~~~~spDg~~l~~~~~ 475 (958)
....|+|||+.|++.++.. .....|+++++ +++. .+.+..... .+..+.|++++ .|++...
T Consensus 289 -~~~~~s~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~ 354 (710)
T 2xdw_A 289 -EYDYVTNEGTVFTFKTNRH---------SPNYRLINIDF---TDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL 354 (710)
T ss_dssp -CEEEEEEETTEEEEEECTT---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEE
T ss_pred -EEEEEeccCCEEEEEECCC---------CCCCEEEEEeC---CCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEE
Confidence 1235999999999974321 23557999996 4443 356654432 45678898554 5556555
Q ss_pred ccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEE
Q 002164 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (958)
.++ ..+||++++.++. ....+. .....+.+ ++++|||+.++|..... .....||
T Consensus 355 ~~g-~~~l~~~~~~~g~-~~~~l~-~~~~~v~~------~~~s~d~~~l~~~~ss~-----------------~~P~~i~ 408 (710)
T 2xdw_A 355 HDV-KNTLQLHDLATGA-LLKIFP-LEVGSVVG------YSGQKKDTEIFYQFTSF-----------------LSPGIIY 408 (710)
T ss_dssp ETT-EEEEEEEETTTCC-EEEEEC-CCSSEEEE------EECCTTCSEEEEEEECS-----------------SCCCEEE
T ss_pred ECC-EEEEEEEECCCCC-EEEecC-CCCceEEE------EecCCCCCEEEEEEeCC-----------------CCCCEEE
Confidence 443 2789999985541 122222 22222222 67899999888876321 1234699
Q ss_pred EEECCCCc--eEEEec
Q 002164 556 LFDINTGS--KERIWE 569 (958)
Q Consensus 556 ~~dl~~g~--~~~l~~ 569 (958)
+||+++|+ .+.+..
T Consensus 409 ~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 409 HCDLTKEELEPRVFRE 424 (710)
T ss_dssp EEETTSSSCCCEEEEE
T ss_pred EEECCCCccceEEeee
Confidence 99999888 555544
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-19 Score=191.27 Aligned_cols=237 Identities=20% Similarity=0.196 Sum_probs=164.7
Q ss_pred CCCcEEEEEEEeCCCe-EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CC
Q 002164 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (958)
..+..+.+++++.+|. .+.+++|.|++. .++.|+||++|||++..++ ... ....+..|++ .|
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~----~~~~p~vv~~HGgg~~~g~--------~~~----~~~~~~~la~~~G 110 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGT--------AES----SDPFCVEVARELG 110 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCC--------GGG----GHHHHHHHHHHHC
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC----CCCCcEEEEECCCccccCC--------hhh----hHHHHHHHHHhcC
Confidence 4556788999988887 899999999752 2358999999998643221 111 1234556776 59
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cee
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (958)
|.|+.++++ |.|.+. ++....|+.++++|+.++ ..+|+++|+|+|+|+||++|+.++.+.++ .++
T Consensus 111 ~~Vv~~d~r---g~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~ 182 (323)
T 1lzl_A 111 FAVANVEYR---LAPETT-----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 182 (323)
T ss_dssp CEEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cEEEEecCC---CCCCCC-----CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCee
Confidence 999996554 555442 235678899999999874 23688899999999999999999987654 499
Q ss_pred EEEEeccCCCCCCCCCCccc-ccchhhhc------HHHH--------------HhcCcccccCCCC--CCEEEEeeCCCC
Q 002164 786 CGIARSGAYNRTLTPFGFQN-EDRTLWEA------TSTY--------------VEMSPFMSANKLK--KPILLVHGEEDN 842 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~--------------~~~sp~~~~~~~~--~P~Lii~G~~D~ 842 (958)
++|+++|..+.......+.. .....|.. ...| ...+|+.. ..++ +|+||+||++|.
T Consensus 183 ~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~ 261 (323)
T 1lzl_A 183 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDP 261 (323)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCT
T ss_pred EEEEECCccCCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCC
Confidence 99999998775432100000 00000000 0011 11223322 1222 699999999998
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHHhhcc
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~---~~~~~~~~~~i~~fl~~~l~~ 900 (958)
. ..++.+++++|+..|+++++++|||++|.+.. .+....+.+.+.+||.+++..
T Consensus 262 ~----~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 262 L----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp T----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred c----hHHHHHHHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 7 46788999999999999999999999998642 233567889999999999853
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=196.02 Aligned_cols=355 Identities=12% Similarity=0.108 Sum_probs=231.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCC--------chhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPP--------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
.+..+.++|||++|+....+.... +..+..+...+..+.+++++......+.++.|.+|+... .....
T Consensus 182 ~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~----~~~~~ 257 (577)
T 2ymu_A 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQT 257 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----CEEEE
T ss_pred ceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC----CEEEE
Confidence 345678999999998877652222 223334445556777888776655555557789998632 33444
Q ss_pred eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
+.+ ....+...+|+|||+.|+.... ...|.+|+..+...+.+...... +..++|+|||+.|+..
T Consensus 258 ~~~--~~~~v~~v~~~~d~~~l~~~~~---------d~~i~~w~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 258 LTG--HSSSVNGVAFRPDGQTIASASD---------DKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDGQTIASA 321 (577)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCSSC-----EEEEEECTTSSEEEEE
T ss_pred Eec--CCCCEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCcEEEEEecCCCC-----eEEEEECCCCCEEEEE
Confidence 543 2346888999999999988652 45688888776555555433322 6789999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP 339 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~ 339 (958)
. ....|.++++ +.....+... ..+..++|
T Consensus 322 ~-------------------------------------------------~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 322 S-------------------------------------------------DDKTVKLWNRNGQHLQTLTGHSSSVWGVAF 352 (577)
T ss_dssp E-------------------------------------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred e-------------------------------------------------CCCeEEEEeCCCCeeEEEeCCCCCEEEEEE
Confidence 2 1133556677 5555666554 66788999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
+|||++|+....+ +.+.+|+..+.....+..+. ..+..+.|+|||+.|+..
T Consensus 353 s~~g~~l~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~l~~~--- 403 (577)
T 2ymu_A 353 SPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVRGVAFSPDGQTIASA--- 403 (577)
T ss_dssp CTTSSEEEEEETT-------------SEEEEEETTCCEEEEEECCS-------------SCEEEEEECTTSSCEEEE---
T ss_pred CCCCCEEEEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CCeEEEEECCCCCEEEEE---
Confidence 9999999887633 48999998877666654432 345789999999988763
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
+..+.|.+|+. ++.....+......+..++|+||++.|+....++ .|.+++..+ +.....
T Consensus 404 ----------~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~----~v~~w~~~~---~~~~~~ 463 (577)
T 2ymu_A 404 ----------SDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK----TVKLWNRNG---QLLQTL 463 (577)
T ss_dssp ----------ETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTS---CEEEEE
T ss_pred ----------eCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC----EEEEEECCC---CEEEEE
Confidence 34567889984 5655566666677788899999999998776443 244445543 223333
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
......+.. +.|+|||++|+....+ ..|++||.++...+.+...... +
T Consensus 464 ~~~~~~v~~------~~~spd~~~las~~~d---------------------~~i~iw~~~~~~~~~~~~h~~~-----v 511 (577)
T 2ymu_A 464 TGHSSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRNGQLLQTLTGHSSS-----V 511 (577)
T ss_dssp ECCSSCEEE------EEECTTSCEEEEEETT---------------------SEEEEEETTSCEEEEEECCSSC-----E
T ss_pred cCCCCCEEE------EEEcCCCCEEEEEeCC---------------------CEEEEEcCCCCEEEEEeCCCCC-----E
Confidence 333333333 7899999998876521 2589999754444444332221 2
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEee
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQIT 625 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt 625 (958)
. ..+|+|||+.|+.... ...+++++.++.....+.
T Consensus 512 ~-------~l~~s~dg~~l~s~~~----dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 512 R-------GVAFSPDGQTIASASD----DKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp E-------EEEECTTSSCEEEEET----TSEEEEECTTSCEEEEEE
T ss_pred E-------EEEEcCCCCEEEEEEC----cCEEEEEeCCCCEEEEEc
Confidence 2 2478999987664433 246888886433333333
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=189.93 Aligned_cols=232 Identities=17% Similarity=0.149 Sum_probs=164.4
Q ss_pred EEE-EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 640 ELI-KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 640 ~~~-~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
+.+ .+.+.||..+.+.++.|.+ .+.|+||++||++.... .....+..|+++||.|++
T Consensus 35 ~~~~~~~~~dg~~l~~~~~~p~~------~~~p~vv~~HG~~~~~~---------------~~~~~~~~l~~~g~~vi~- 92 (342)
T 3hju_A 35 QDLPHLVNADGQYLFCRYWKPTG------TPKALIFVSHGAGEHSG---------------RYEELARMLMGLDLLVFA- 92 (342)
T ss_dssp TSSCEEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCGG---------------GGHHHHHHHHTTTEEEEE-
T ss_pred ccCceEEccCCeEEEEEEeCCCC------CCCcEEEEECCCCcccc---------------hHHHHHHHHHhCCCeEEE-
Confidence 344 6788899999999998863 23799999999642211 122456678889999999
Q ss_pred CCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 719 PTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 719 ~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
.+.+|+|.+... .......++|+.++++++..+ .+.++++|+|||+||.+++.++.++|++++++|+++|...
T Consensus 93 --~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 168 (342)
T 3hju_A 93 --HDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168 (342)
T ss_dssp --ECCTTSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCS
T ss_pred --EcCCCCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccc
Confidence 555677776532 233567789999999999887 4557999999999999999999999999999999998765
Q ss_pred CCCCCCC------------------ccccc-chhhhcH---HHHH---------------------hcCcccccCCCCCC
Q 002164 796 RTLTPFG------------------FQNED-RTLWEAT---STYV---------------------EMSPFMSANKLKKP 832 (958)
Q Consensus 796 ~~~~~~~------------------~~~~~-~~~~~~~---~~~~---------------------~~sp~~~~~~~~~P 832 (958)
....... ..... ....... ..+. ..+....+.++++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P 248 (342)
T 3hju_A 169 ANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP 248 (342)
T ss_dssp CCTTTTSHHHHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSC
T ss_pred cchhhhhHHHHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 3211000 00000 0000000 0000 00112446778999
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHhhccC
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~~ 901 (958)
+|+++|++|..++ ++.+.++++.++. ..+++++++++||.+... +....++..+++||.+++...
T Consensus 249 vlii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (342)
T 3hju_A 249 FLLLQGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTATA 315 (342)
T ss_dssp EEEEEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeCCCcccC--hHHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999998 8888888887753 258999999999997432 335677888999999998643
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-20 Score=198.06 Aligned_cols=210 Identities=16% Similarity=0.152 Sum_probs=150.1
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
...+.|. +..+...+|+|++. .++.|+||++|||++..+.. ..+ ...+..|+++||+|+.+
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~----~~~~p~vv~~HGgg~~~~~~--------~~~----~~~~~~l~~~G~~v~~~ 118 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKT----TNQAPLFVFVHGGYWQEMDM--------SMS----CSIVGPLVRRGYRVAVM 118 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTC----CTTCCEEEEECCSTTTSCCG--------GGS----CTTHHHHHHTTCEEEEE
T ss_pred eeeeccC---CCCcEEEEEecCCC----CCCCCEEEEECCCcCcCCCh--------hHH----HHHHHHHHhCCCEEEEe
Confidence 3455554 34456688888642 23589999999986543221 111 12366789999999996
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCC-------CceeEEEEe
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAP-------HLFCCGIAR 790 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p-------~~~~a~v~~ 790 (958)
+++ |.+.. .....+.|+.++++|+.++ ...++++|+|+|||+||++++.++.+.+ ++++++|++
T Consensus 119 d~r---~~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~ 190 (303)
T 4e15_A 119 DYN---LCPQV-----TLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFL 190 (303)
T ss_dssp CCC---CTTTS-----CHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEE
T ss_pred cCC---CCCCC-----ChhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEE
Confidence 665 43332 2466788999999999874 2356789999999999999999998653 279999999
Q ss_pred ccCCCCCCCCCCc-ccccchhhhcHHHHHhcCcc-cccCCC----CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 791 SGAYNRTLTPFGF-QNEDRTLWEATSTYVEMSPF-MSANKL----KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 791 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~-~~~~~~----~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
+|+++........ ......+....+.+...+|+ ..+.++ ++|+||+||++|..|+ +.++.+++++|+..|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~ 268 (303)
T 4e15_A 191 CGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTF--IEQSRHYADVLRKKGYK 268 (303)
T ss_dssp SCCCCCHHHHTCTTTSGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHH--HHHHHHHHHHHHHHTCC
T ss_pred eeeeccHhhhcccccchhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHHCCCc
Confidence 9987742110000 00111122233445566777 566665 8999999999999998 99999999999999999
Q ss_pred EEEEEeCCCCccC
Q 002164 865 CRLVILPFESHGY 877 (958)
Q Consensus 865 ~~~~~~p~~~H~~ 877 (958)
++++++|+++|..
T Consensus 269 ~~~~~~~g~~H~~ 281 (303)
T 4e15_A 269 ASFTLFKGYDHFD 281 (303)
T ss_dssp EEEEEEEEEETTH
T ss_pred eEEEEeCCCCchH
Confidence 9999999999953
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=179.96 Aligned_cols=225 Identities=12% Similarity=0.110 Sum_probs=155.0
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+..++.+.||..+++.+|.|.+ .++.|+||++||+++..+. .. .+.......++++ |.|+++
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~--------~~---~~~~~~~~~l~~~-~~v~~~ 65 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-----QPTKGVIVYIHGGGLMFGK--------AN---DLSPQYIDILTEH-YDLIQL 65 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-----SSCSEEEEEECCSTTTSCC--------TT---CSCHHHHHHHTTT-EEEEEE
T ss_pred ceEEEEecCCcEEEEEEEEccCC-----CCCCCEEEEEECCcccCCc--------hh---hhHHHHHHHHHhC-ceEEee
Confidence 45677888999999999999864 2347999999997533211 11 1122445556666 999995
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+++ |.|.+ .......|+.++++++.++ .+.++++|+|||+||.+++.++.+ ++++++|+.+|..+...
T Consensus 66 d~~---~~~~~-----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~ 133 (275)
T 3h04_A 66 SYR---LLPEV-----SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINT 133 (275)
T ss_dssp CCC---CTTTS-----CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCS
T ss_pred ccc---cCCcc-----ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccc
Confidence 554 55443 2456788999999999987 567899999999999999999999 68999999999876421
Q ss_pred CCCCcc---------------------c---ccchhhhcHHH-------------HH-------hcC-cccccCCCCCCE
Q 002164 799 TPFGFQ---------------------N---EDRTLWEATST-------------YV-------EMS-PFMSANKLKKPI 833 (958)
Q Consensus 799 ~~~~~~---------------------~---~~~~~~~~~~~-------------~~-------~~s-p~~~~~~~~~P~ 833 (958)
..+... . ........... +. ... ....+.+++ |+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~ 212 (275)
T 3h04_A 134 EPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PV 212 (275)
T ss_dssp HHHHSCCHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CE
T ss_pred cccccccchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CE
Confidence 100000 0 00000000000 00 000 011235666 99
Q ss_pred EEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhhc
Q 002164 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (958)
|++||++|..+| +..+.++++.++ ..+++++|+++|.+...... .++.+.+.+||++++.
T Consensus 213 lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 213 FIAHCNGDYDVP--VEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEEETTCSSSC--THHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCC--hHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999998 888888877554 46899999999998655443 7889999999999873
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=181.27 Aligned_cols=228 Identities=17% Similarity=0.129 Sum_probs=161.2
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+.++ .+|.++.++++.|.+ .+.|+||++||.+.. .........+..|+++||.|++
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~------~~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~ 80 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG------EIYDMAIIFHGFTAN-------------RNTSLLREIANSLRDENIASVR 80 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS------SSEEEEEEECCTTCC-------------TTCHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEec-cCCEEEEEEEEcCCC------CCCCEEEEEcCCCCC-------------ccccHHHHHHHHHHhCCcEEEE
Confidence 34555555 489999999999864 137999999996421 0111123456678899999999
Q ss_pred cCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 718 GPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
.+.+|+|.+... ........+|+.++++++.++... ++++|+|||+||.+++.++.++|++++++|+++|...
T Consensus 81 ---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 155 (270)
T 3pfb_A 81 ---FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAAT 155 (270)
T ss_dssp ---ECCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTH
T ss_pred ---EccccccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccc
Confidence 555677766543 223567789999999999887433 5999999999999999999999999999999998653
Q ss_pred CCC------------CCCCcccc----cch-hhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 796 RTL------------TPFGFQNE----DRT-LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 796 ~~~------------~~~~~~~~----~~~-~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
... .+...... ... .......+...+....+.++++|+|+++|++|..+| +..+.++++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~ 233 (270)
T 3pfb_A 156 LKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVS--PNASKKYDQIY 233 (270)
T ss_dssp HHHHHHHTEETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHC
T ss_pred cchhhhhhhhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCC--HHHHHHHHHhC
Confidence 110 00000000 000 000112233445556778899999999999999998 88888887775
Q ss_pred HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+ .++++++++++|.+. .+....+.+.+.+||.++
T Consensus 234 ~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 234 Q----NSTLHLIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp S----SEEEEEETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred C----CCeEEEcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 3 479999999999975 556677888888888764
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-19 Score=191.08 Aligned_cols=230 Identities=15% Similarity=0.110 Sum_probs=154.1
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~v 715 (958)
...+.+++ +|..+ |+|++. .. ..|+||++|||++..++. .. ....+..|++ .||.|
T Consensus 58 ~~~~~~~~---~g~~~----~~p~~~--~~--~~~~vv~~HGgg~~~g~~--------~~----~~~~~~~la~~~g~~v 114 (322)
T 3k6k_A 58 VELTLTDL---GGVPC----IRQATD--GA--GAAHILYFHGGGYISGSP--------ST----HLVLTTQLAKQSSATL 114 (322)
T ss_dssp CEEEEEEE---TTEEE----EEEECT--TC--CSCEEEEECCSTTTSCCH--------HH----HHHHHHHHHHHHTCEE
T ss_pred ceEEEEEE---CCEeE----EecCCC--CC--CCeEEEEEcCCcccCCCh--------HH----HHHHHHHHHHhcCCEE
Confidence 34444444 67655 566541 11 245599999986432211 11 1233456665 49999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEec
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARS 791 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~ 791 (958)
++++++.. +.. .++..++|+.++++|+.++ .+|+++|+|+|+|+||.+|+.++.+.++. ++++|+++
T Consensus 115 ~~~dyr~~---~~~-----~~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~ 185 (322)
T 3k6k_A 115 WSLDYRLA---PEN-----PFPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLS 185 (322)
T ss_dssp EEECCCCT---TTS-----CTTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEES
T ss_pred EEeeCCCC---CCC-----CCchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 99777533 222 2346678999999999998 46889999999999999999999886654 99999999
Q ss_pred cCCCCCCCCCCcccc-cchhhhc-------HHHH--------HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 792 GAYNRTLTPFGFQNE-DRTLWEA-------TSTY--------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 792 ~~~~~~~~~~~~~~~-~~~~~~~-------~~~~--------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
|.++.......+... ...++.. ...| ...+|+....+..+|+||+||++|.. ..++.+++
T Consensus 186 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~----~~~~~~~~ 261 (322)
T 3k6k_A 186 PFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEAL----LSDSTTLA 261 (322)
T ss_dssp CCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTT----HHHHHHHH
T ss_pred CCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCcc----HHHHHHHH
Confidence 988754322111000 0000000 0111 11245443334447999999999976 57889999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhhccCC
Q 002164 856 NALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++|+..|+++++++||+++|.+.. .+....+++.+.+||.+++....
T Consensus 262 ~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3k6k_A 262 ERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKLA 312 (322)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998743 24467889999999999986543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=202.23 Aligned_cols=329 Identities=13% Similarity=0.049 Sum_probs=202.7
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
++..++....... .+|||++++|...+ .+... ..||+.+.. + +..+
T Consensus 62 ~~~~~~~~~~~~~--p~~dG~~~~~~~~~----------------------~~~~~------~~l~~~~~~--~--~~~~ 107 (695)
T 2bkl_A 62 RFKELFYTDSVST--PSRRNGRFFYVRTH----------------------KDKEK------AILYWRQGE--S--GQEK 107 (695)
T ss_dssp HHHHHHSCCEECC--CEEETTEEEEEEEC----------------------TTCSS------CEEEEEEST--T--SCCE
T ss_pred HHHHhhccccCCC--CEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCC--C--CCcE
Confidence 4556666544444 45999999999875 11111 357887753 2 4556
Q ss_pred eeccCC---CC--CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 181 EIQGFP---DG--AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 181 ~lt~~~---~~--~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
+|+... .+ ..+..++|||||++|||+.+.. +++...||++|+++|+..+....+... ...++|||||
T Consensus 108 ~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~~~----~~~~~wspDg 179 (695)
T 2bkl_A 108 VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----AADEAVLHVIDVDSGEWSKVDVIEGGK----YATPKWTPDS 179 (695)
T ss_dssp EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET----TCSCCEEEEEETTTCCBCSSCCBSCCT----TCCCEECTTS
T ss_pred EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC----CCceEEEEEEECCCCCCcCCcccCccc----ccceEEecCC
Confidence 665311 11 1578899999999999988643 455689999999999875121112211 2589999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC-
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP- 331 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~- 331 (958)
+.|+|+..+..+. +. ..+ .....+||++++ ++. .+.+...
T Consensus 180 ~~l~~~~~d~~~~---------~~----------------------~~~-----~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 180 KGFYYEWLPTDPS---------IK----------------------VDE-----RPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp SEEEEEECCCCTT---------SC----------------------GGG-----GGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred CEEEEEEecCCCC---------Cc----------------------ccc-----CCCCCEEEEEECCCCchhceEEEecC
Confidence 9999985432111 00 000 003467999999 664 2344432
Q ss_pred ---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec
Q 002164 332 ---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 332 ---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
..+..+.|||||++|++.+.... ...++++++..++..+.|+... .....+.| +
T Consensus 224 ~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~l~~~~-------------~~~~~~~~-~ 280 (695)
T 2bkl_A 224 GDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFRLLVKGV-------------GAKYEVHA-W 280 (695)
T ss_dssp CCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCEEEEECS-------------SCCEEEEE-E
T ss_pred CCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceEEeecCC-------------CceEEEEe-c
Confidence 34568899999999999986531 1347888887666677766432 12234445 7
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEee--ccccCceeeecCCceEEEEEeccccceEE
Q 002164 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 409 DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
||+ +++.++.. .....|+++++ +++.. +.+... ...+..+.|+ + ..|++....++ ..+|
T Consensus 281 ~g~-l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~~dg-~~~l 344 (695)
T 2bkl_A 281 KDR-FYVLTDEG---------APRQRVFEVDP---AKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYLKDA-TSEV 344 (695)
T ss_dssp TTE-EEEEECTT---------CTTCEEEEEBT---TBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEEETT-EEEE
T ss_pred CCc-EEEEECCC---------CCCCEEEEEeC---CCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEEECC-EEEE
Confidence 888 77753321 23567999985 44442 556543 3345667887 4 45666555443 3789
Q ss_pred EEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
|+++++++ ....+.-.....+.. ++++|||+.+++..... .....||+||+++++
T Consensus 345 ~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~-----------------~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKGK--PVRTVQLPGVGAASN------LMGLEDLDDAYYVFTSF-----------------TTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTCC--EEEECCCSSSSEECC------CBSCTTCSEEEEEEEET-----------------TEEEEEEEEETTTCC
T ss_pred EEEeCCCC--eeEEecCCCCeEEEE------eecCCCCCEEEEEEcCC-----------------CCCCEEEEEECCCCc
Confidence 99998653 222221111112222 66899999988876431 122469999999998
Q ss_pred eEEEecCC
Q 002164 564 KERIWESD 571 (958)
Q Consensus 564 ~~~l~~~~ 571 (958)
.+.+....
T Consensus 400 ~~~l~~~~ 407 (695)
T 2bkl_A 400 SELWAKVD 407 (695)
T ss_dssp EEEEEECC
T ss_pred EEEEecCC
Confidence 87776543
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=179.11 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=152.5
Q ss_pred CCCcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC--
Q 002164 635 ASLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-- 711 (958)
Q Consensus 635 ~~~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-- 711 (958)
...+.+.+++.+. +|..+.+.+|+|+++++. +++|+||++||+......+ ..........+..|+++
T Consensus 28 ~~g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~--~~~P~vv~lHG~g~~~~~~--------~~~~~~~~~~~~~l~~~g~ 97 (268)
T 1jjf_A 28 PRGQVVNISYFSTATNSTRPARVYLPPGYSKD--KKYSVLYLLHGIGGSENDW--------FEGGGRANVIADNLIAEGK 97 (268)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEECTTCCTT--SCBCEEEEECCTTCCTTTT--------TTTTTCHHHHHHHHHHTTS
T ss_pred CCceEEEEEEeccccCCceEEEEEeCCCCCCC--CCccEEEEECCCCCCcchh--------hhccccHHHHHHHHHHcCC
Confidence 3445677888765 678999999999987543 3599999999975322110 01101112235567776
Q ss_pred --CcEEEEcCCCCCCCCCCcccchhhHHHHHHH-HHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 712 --GFAILGGPTTPIIGEGDEEANDRFVEQLVAC-AEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 712 --G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D-~~~av~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
||+|+.+++++. +... ...+ .....+ +.++++++.++..+ |+++++|+|+|+||++|+.++.++|++|++
T Consensus 98 ~~~~~vv~~d~~~~---~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 172 (268)
T 1jjf_A 98 IKPLIIVTPNTNAA---GPGI-ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAY 172 (268)
T ss_dssp SCCCEEEEECCCCC---CTTC-SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSE
T ss_pred CCCEEEEEeCCCCC---Cccc-cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhh
Confidence 599999776532 2211 1112 223333 55677777766444 889999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCC-CEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (958)
+++++|..+.... ...+.... .....+. |+|++||++|..+| . +++++++|+..|+++
T Consensus 173 ~v~~s~~~~~~~~--------~~~~~~~~---------~~~~~~~pp~li~~G~~D~~v~--~--~~~~~~~l~~~g~~~ 231 (268)
T 1jjf_A 173 IGPISAAPNTYPN--------ERLFPDGG---------KAAREKLKLLFIACGTNDSLIG--F--GQRVHEYCVANNINH 231 (268)
T ss_dssp EEEESCCTTSCCH--------HHHCTTTT---------HHHHHHCSEEEEEEETTCTTHH--H--HHHHHHHHHHTTCCC
T ss_pred eEEeCCCCCCCch--------hhhcCcch---------hhhhhcCceEEEEecCCCCCcc--H--HHHHHHHHHHCCCce
Confidence 9999997553210 00010000 0001234 49999999999875 3 778999999999999
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 866 RLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 866 ~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
++.+||+++|.+. .....+..+++||.++.
T Consensus 232 ~~~~~~g~~H~~~---~~~~~~~~~~~~l~~~~ 261 (268)
T 1jjf_A 232 VYWLIQGGGHDFN---VWKPGLWNFLQMADEAG 261 (268)
T ss_dssp EEEEETTCCSSHH---HHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCcCHh---HHHHHHHHHHHHHHhcC
Confidence 9999999999873 23455678899998874
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=210.52 Aligned_cols=245 Identities=19% Similarity=0.216 Sum_probs=165.2
Q ss_pred EeCCCeE--EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcc---------c--------CC-----------------
Q 002164 645 QRKDGVQ--LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD---------A--------AG----------------- 688 (958)
Q Consensus 645 ~~~dg~~--l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~---------~--------~~----------------- 688 (958)
+..||.+ |.+.+|+|++. +++|+||..||....... . .+
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~-----~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 253 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST-----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAK 253 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS-----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCCC-----CcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccc
Confidence 4679999 99999999862 359999987763221100 0 00
Q ss_pred ---cccCCCCCCCCc-CcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHc----------
Q 002164 689 ---QVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRR---------- 753 (958)
Q Consensus 689 ---~~~~~~~~~~~~-~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~---------- 753 (958)
....+...|... .......|+++||+|+. .+.+|+|.+.+. ..+.....+|+.++++||.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~---~D~RG~G~S~G~~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 254 ELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIY---VAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEE---ECCTTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccchhccccccccchHHHHHHCCCEEEE---ECCCcCCCCCCcCCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 000000111110 12345789999999999 455566666543 223346789999999999853
Q ss_pred -----CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC---------CCCCccccc---------chh
Q 002164 754 -----GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED---------RTL 810 (958)
Q Consensus 754 -----~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---------~~~~~~~~~---------~~~ 810 (958)
++ +..||+++|+||||++++.+|+++|+.++++|+.+|+.++.. ...++.... ...
T Consensus 331 ~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 331 HEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred ccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 33 457999999999999999999999999999999998764210 000110000 000
Q ss_pred hh------------c----------------HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC
Q 002164 811 WE------------A----------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (958)
Q Consensus 811 ~~------------~----------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (958)
+. . ...|...++...+++|++|+|++||.+|.+|| +.++.+++++++. +
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp--~~~a~~l~~al~~-~ 486 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-G 486 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-T
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCC--hHHHHHHHHhhcc-C
Confidence 00 0 01233456778889999999999999999998 9999999999987 7
Q ss_pred CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 863 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
.++++++ ++++|..........+.+.+.+||++||++..
T Consensus 487 ~~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~~ 525 (763)
T 1lns_A 487 HAKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLLDRD 525 (763)
T ss_dssp CCEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 7777766 45699864322233467899999999998653
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=180.91 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=153.3
Q ss_pred CcEEEEEEEeC--CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 637 LQKELIKYQRK--DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 637 ~~~~~~~~~~~--dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
+..+.++++.. ++. ..+.+|+|.... +++.|+||++||..... ..| ...+..|+++||.
T Consensus 23 ~~~~~~~~~~~~~~~~-~~~~l~~p~~~~---~~~~p~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~ 83 (262)
T 1jfr_A 23 YATSQTSVSSLVASGF-GGGTIYYPTSTA---DGTFGAVVISPGFTAYQ-----------SSI----AWLGPRLASQGFV 83 (262)
T ss_dssp SCEEEEEECTTTCSSS-CCEEEEEESCCT---TCCEEEEEEECCTTCCG-----------GGT----TTHHHHHHTTTCE
T ss_pred CCccceEecceeccCC-CceeEEecCCCC---CCCCCEEEEeCCcCCCc-----------hhH----HHHHHHHHhCCCE
Confidence 34555666654 332 246778886521 23589999999964211 111 2346678899999
Q ss_pred EEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 715 vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
|+.+++ +|+|.+. .....|+.++++++.+ ...++.++++++|||+||.+++.++.++|+ ++++|++
T Consensus 84 v~~~d~---~g~g~~~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~ 153 (262)
T 1jfr_A 84 VFTIDT---NTTLDQP------DSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPL 153 (262)
T ss_dssp EEEECC---SSTTCCH------HHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEE
T ss_pred EEEeCC---CCCCCCC------chhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEee
Confidence 999555 5666442 2445688899999988 445677899999999999999999999987 8999998
Q ss_pred ccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEE
Q 002164 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~ 869 (958)
+|... ...+.++++|+|++||++|..++ ++. ++++++.++ .+.++++++
T Consensus 154 ~p~~~---------------------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~l~-~~~~~~~~~ 203 (262)
T 1jfr_A 154 TGWNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLP-GSLDKAYLE 203 (262)
T ss_dssp SCCCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSC-TTSCEEEEE
T ss_pred cccCc---------------------------cccccccCCCEEEEecCccccCC--chhhHHHHHHHhh-cCCCceEEE
Confidence 87421 23345678999999999999998 888 999999884 356899999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 870 LPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 870 ~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
+++++|.+.. +....+.+.+.+||++++...
T Consensus 204 ~~~~~H~~~~-~~~~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 204 LRGASHFTPN-TSDTTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp ETTCCTTGGG-SCCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCCcCCcc-cchHHHHHHHHHHHHHHhcCc
Confidence 9999999753 334678899999999998754
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=189.84 Aligned_cols=232 Identities=18% Similarity=0.137 Sum_probs=160.0
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-CcEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~v 715 (958)
...+.+++++.+| .+.+++|.|.+ ..+.|+||++||+++..+ +...+ ...+..|+++ ||.|
T Consensus 46 ~~~~~~~i~~~~g-~i~~~~~~p~~-----~~~~p~vv~~HGgg~~~g--------~~~~~----~~~~~~la~~~g~~v 107 (311)
T 2c7b_A 46 AETRDVHIPVSGG-SIRARVYFPKK-----AAGLPAVLYYHGGGFVFG--------SIETH----DHICRRLSRLSDSVV 107 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-----CSSEEEEEEECCSTTTSC--------CTGGG----HHHHHHHHHHHTCEE
T ss_pred ceEEEEEecCCCC-cEEEEEEecCC-----CCCCcEEEEECCCcccCC--------Chhhh----HHHHHHHHHhcCCEE
Confidence 4678889998777 89999999975 123799999999753221 11111 2345677775 9999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEE
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGI 788 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v 788 (958)
+.++++ |+|.+. ++....|+.++++|+.++. .+|+++|+|+|+|+||++++.++.+.|+ +++++|
T Consensus 108 ~~~d~r---g~g~~~-----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~v 179 (311)
T 2c7b_A 108 VSVDYR---LAPEYK-----FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQV 179 (311)
T ss_dssp EEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEE
T ss_pred EEecCC---CCCCCC-----CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEE
Confidence 996554 555442 2356788999999998862 3678899999999999999999987654 599999
Q ss_pred EeccCCCCCCCCC-----------Cccccc--chhhhc----H--HHHHhcCcccc-cCCCCCCEEEEeeCCCCCCCCCh
Q 002164 789 ARSGAYNRTLTPF-----------GFQNED--RTLWEA----T--STYVEMSPFMS-ANKLKKPILLVHGEEDNNSGTLT 848 (958)
Q Consensus 789 ~~~~~~~~~~~~~-----------~~~~~~--~~~~~~----~--~~~~~~sp~~~-~~~~~~P~Lii~G~~D~~v~~~~ 848 (958)
+.+|..+...... .+.... ...+.. . ......+|+.. +..+ .|+||+||++|..+
T Consensus 180 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~---- 254 (311)
T 2c7b_A 180 LIYPVVNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGL-PPALVVTAEYDPLR---- 254 (311)
T ss_dssp EESCCCCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTC-CCEEEEEETTCTTH----
T ss_pred EECCccCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCC-CcceEEEcCCCCch----
Confidence 9999877311000 000000 000000 0 00011233322 2333 39999999999875
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhhc
Q 002164 849 MQSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 849 ~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l~ 899 (958)
..+..++++++..+.+++++++|+++|.+.. .+....+.+.+.+||.+++.
T Consensus 255 ~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 255 DEGELYAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999998752 34557888999999999874
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=181.99 Aligned_cols=240 Identities=14% Similarity=0.022 Sum_probs=155.7
Q ss_pred CcEEEEEEEeC-CCeEEEEEEEecCCCCC--CCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 637 LQKELIKYQRK-DGVQLSATLYLPPGYDP--SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 637 ~~~~~~~~~~~-dg~~l~~~l~~P~~~~~--~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
|..+.+++.+. .|..+.+++|+|++++. ..++++|+||++||+.... ..+.... .....+.+.||
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~-----------~~~~~~~-~~~~~~~~~~~ 72 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH-----------NSWLKRT-NVERLLRGTNL 72 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT-----------THHHHHS-CHHHHTTTCCC
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH-----------HHHHhcc-CHHHHHhcCCe
Confidence 45677777754 68899999999988621 1123589999999974221 1111000 11223345799
Q ss_pred EEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 714 AILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
+|+.+++. +.+.... ...+.....+|+...++.+..+..+|+++++|+|||+||++|+.++. +|++|+++|+++
T Consensus 73 ~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~ 148 (263)
T 2uz0_A 73 IVVMPNTS---NGWYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFS 148 (263)
T ss_dssp EEEECCCT---TSTTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEES
T ss_pred EEEEECCC---CCccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEec
Confidence 99985553 3332221 22334555667777666654434568899999999999999999999 889999999999
Q ss_pred cCCCCCCCCCCccc-ccch----hhh--cHHHHHhcCcccccCCCC--CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC
Q 002164 792 GAYNRTLTPFGFQN-EDRT----LWE--ATSTYVEMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (958)
Q Consensus 792 ~~~~~~~~~~~~~~-~~~~----~~~--~~~~~~~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (958)
|..+.......... .... .+. ....+...+|...+.+++ +|+|++||++|..+ ..+++++++|+..|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v----~~~~~~~~~l~~~g 224 (263)
T 2uz0_A 149 GALSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY----EANNLAVKNLKKLG 224 (263)
T ss_dssp CCCCSSSCCGGGTTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH----HHHHHHHHHHHHTT
T ss_pred CCcchhhccccccccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhh----HHHHHHHHHHHHCC
Confidence 98765431100000 0000 000 001223345555555564 79999999999875 35789999999999
Q ss_pred CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 863 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
.+++++++|| +|.+. .....+..+++||.++++.
T Consensus 225 ~~~~~~~~~g-~H~~~---~~~~~~~~~~~~l~~~l~~ 258 (263)
T 2uz0_A 225 FDVTYSHSAG-THEWY---YWEKQLEVFLTTLPIDFKL 258 (263)
T ss_dssp CEEEEEEESC-CSSHH---HHHHHHHHHHHHSSSCCCC
T ss_pred CCeEEEECCC-CcCHH---HHHHHHHHHHHHHHhhccc
Confidence 9999999999 99863 2345678889999888753
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=191.29 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=163.2
Q ss_pred CCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 636 ~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
.+..+.++++..+|..+.+.+|.|.+.. .+.|+||++|||.+..+. .. ..........|+++||+|
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~~----~~~p~vv~iHGgg~~~g~--------~~--~~~~~~~~~~la~~g~~v 144 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGVE----GVLPGLVYTHGGGMTILT--------TD--NRVHRRWCTDLAAAGSVV 144 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTCC----SCEEEEEEECCSTTTSSC--------SS--SHHHHHHHHHHHHTTCEE
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCCC----CCCeEEEEEcCCccccCC--------Cc--ccchhHHHHHHHhCCCEE
Confidence 3456778888888889999999997621 248999999998643221 11 001123466788899999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-----CCCceeEE
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH-----APHLFCCG 787 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~a~ 787 (958)
+.+++++..|. . +...+...+.|+.++++|+.++. .+| +|+|+|+|+||.+++.++.+ .|++++++
T Consensus 145 v~~d~r~~gg~---~-~~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~ 218 (361)
T 1jkm_A 145 VMVDFRNAWTA---E-GHHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 218 (361)
T ss_dssp EEEECCCSEET---T-EECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred EEEecCCCCCC---C-CCCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 99776644322 1 22223566789999999998862 244 99999999999999999998 77789999
Q ss_pred EEeccCCCCCCCC---------CCcccccchhhhc--H----HHH---------HhcCcc----cccCCCCCCEEEEeeC
Q 002164 788 IARSGAYNRTLTP---------FGFQNEDRTLWEA--T----STY---------VEMSPF----MSANKLKKPILLVHGE 839 (958)
Q Consensus 788 v~~~~~~~~~~~~---------~~~~~~~~~~~~~--~----~~~---------~~~sp~----~~~~~~~~P~Lii~G~ 839 (958)
|+.+|..+..... ..+.......+.. . ..| ...+|+ ..+.++. |+||+||+
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~ 297 (361)
T 1jkm_A 219 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNE 297 (361)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEET
T ss_pred EEECCccccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcC
Confidence 9999987752110 0000000000000 0 000 012333 2345565 99999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC-C----cccH-HHHHHHHHHHHHHhh
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-A----RESI-MHVLWETDRWLQKYC 898 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~-~----~~~~-~~~~~~i~~fl~~~l 898 (958)
+|..+ .++.+++++|+..|.+++++++|+++|.+. . .+.. ..+.+.+.+||+++.
T Consensus 298 ~D~~~----~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLR----DEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcch----hhHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99875 378899999999999999999999999875 2 1334 677889999998874
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=176.07 Aligned_cols=270 Identities=14% Similarity=0.137 Sum_probs=183.5
Q ss_pred CCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchh
Q 002164 216 SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTF 295 (958)
Q Consensus 216 ~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 295 (958)
.....|+++++.+++.+.+...... +..++|+|||++|++.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~---------------------------------- 59 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLN---------------------------------- 59 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEE----------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEE----------------------------------
Confidence 3467899999999988877665432 6789999999999987
Q ss_pred hhhccCchhhhHHHHhhcceEEEEEc-C-CeeeecCCC---ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 296 QDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 296 ~d~~~~~~~~~~~~~~~~~~l~~~~~-~-g~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|+++++ + ++...+... ..+..+.|||||++|++...... ....|++
T Consensus 60 ----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---------~~~~l~~ 114 (297)
T 2ojh_A 60 ----------------SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---------GKSAIYL 114 (297)
T ss_dssp ----------------ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---------SSCEEEE
T ss_pred ----------------cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---------CcceEEE
Confidence 2346999999 7 777766643 45678999999999999884321 1347888
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
++++++..+.+.... ....+.|+|||+.|++.... ...-.||.++. .+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~--------------~~~~~~~spdg~~l~~~~~~----------~~~~~l~~~~~---~~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL--------------PSYWHGWSPDGKSFTYCGIR----------DQVFDIYSMDI---DSGVETR 167 (297)
T ss_dssp EETTCCCCEECCSSS--------------SEEEEEECTTSSEEEEEEEE----------TTEEEEEEEET---TTCCEEE
T ss_pred EECCCCceEEeecCC--------------CccceEECCCCCEEEEEECC----------CCceEEEEEEC---CCCcceE
Confidence 888777666655432 23567899999999875322 12235777774 5666677
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeee
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
+......+..+.|+|||+.|++....++ ..+||.+++.++ ....+... ...+.. +.|+|||++|++....
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~i~~~~~~~~--~~~~~~~~-~~~~~~------~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTG-QMQIWRVRVDGS--SVERITDS-AYGDWF------PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSS--CEEECCCC-SEEEEE------EEECTTSSEEEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecCCC-CccEEEECCCCC--CcEEEecC-CcccCC------eEECCCCCEEEEEEcC
Confidence 7666667788999999999999876443 378999987763 22333222 122222 7899999999988753
Q ss_pred ccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecC
Q 002164 531 ENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK 605 (958)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~ 605 (958)
..... .+......|++||+++++.+.+....+. ......++|+|||+.+++.....
T Consensus 238 ~~~~~----------~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 238 ADVFD----------HPRDLDVRVQLMDMDGGNVETLFDLFGG---------QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTCCS----------CCSSEEEEEEEEETTSCSCEEEEEEEES---------TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCc----------ccccCceEEEEEecCCCCceeeeccCCC---------CcccccceECCCCCEEEEEEecc
Confidence 21000 0000124699999999887776542111 01112368999999998877654
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=179.64 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=159.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.+.+.+|.+++++++.|.+ .+.|+||++||..... . .....+..|+++||.|++ .+
T Consensus 21 ~~~~~~g~~l~~~~~~~~~------~~~~~vv~~hG~~~~~-----------~----~~~~~~~~l~~~g~~v~~---~d 76 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG------TPKALIFVSHGAGEHS-----------G----RYEELARMLMGLDLLVFA---HD 76 (303)
T ss_dssp EEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------G----GGHHHHHHHHHTTEEEEE---EC
T ss_pred eEecCCCeEEEEEEeccCC------CCCeEEEEECCCCchh-----------h----HHHHHHHHHHhCCCcEEE---eC
Confidence 6778899999999998863 2379999999964211 1 112456678889999999 55
Q ss_pred CCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC
Q 002164 723 IIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 723 ~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
.+|+|.+.... ......++|+.++++++..+ .+.++++++|||+||.+++.++.++|++++++|+++|.......
T Consensus 77 ~~G~G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~ 154 (303)
T 3pe6_A 77 HVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 154 (303)
T ss_dssp CTTSTTSCSSTTCCSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchh
Confidence 56777765321 23467789999999999887 34569999999999999999999999999999999987542100
Q ss_pred ------------------CCCccccc-chhhhcH---HHHH---------------------hcCcccccCCCCCCEEEE
Q 002164 800 ------------------PFGFQNED-RTLWEAT---STYV---------------------EMSPFMSANKLKKPILLV 836 (958)
Q Consensus 800 ------------------~~~~~~~~-~~~~~~~---~~~~---------------------~~sp~~~~~~~~~P~Lii 836 (958)
........ ....... ..+. .......+.++++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 234 (303)
T 3pe6_A 155 SATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLL 234 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEE
T ss_pred ccHHHHHHHHHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 00000000 0000000 0000 001123466789999999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHhhcc
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~fl~~~l~~ 900 (958)
+|++|..++ +..+.++++.++. ..+++++++++||.+... +....+...+++||.+++..
T Consensus 235 ~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 235 QGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp EETTCSSBC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCCCC--hHHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 999999998 8888888887653 258999999999987432 33557788899999998753
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=186.14 Aligned_cols=193 Identities=19% Similarity=0.155 Sum_probs=149.3
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.. .+.+|+|.+.. +.|+||++||+.... .........|+++||.|+.+++ +|+
T Consensus 79 ~~g~~-~~~~~~p~~~~-----~~p~vv~~HG~~~~~---------------~~~~~~~~~la~~G~~vv~~d~---~g~ 134 (306)
T 3vis_A 79 ADGFG-GGTIYYPRENN-----TYGAIAISPGYTGTQ---------------SSIAWLGERIASHGFVVIAIDT---NTT 134 (306)
T ss_dssp CSSSC-CEEEEEESSCS-----CEEEEEEECCTTCCH---------------HHHHHHHHHHHTTTEEEEEECC---SST
T ss_pred cCCCc-ceEEEeeCCCC-----CCCEEEEeCCCcCCH---------------HHHHHHHHHHHhCCCEEEEecC---CCC
Confidence 34443 35778887521 489999999964211 0112456678899999999554 566
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 727 GDEEANDRFVEQLVACAEAAVEEVVRR------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 727 G~~~~~~~~~~~~~~D~~~av~~l~~~------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
|.+. .....|+.++++|+.++ ..+|.++|+++|||+||.+++.++.++|+ ++++|+++|...
T Consensus 135 g~s~------~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~----- 202 (306)
T 3vis_A 135 LDQP------DSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL----- 202 (306)
T ss_dssp TCCH------HHHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred CCCc------chHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC-----
Confidence 6552 23447889999999997 67888999999999999999999999976 999999887532
Q ss_pred CCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChH-HHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002164 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGYAA 879 (958)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 879 (958)
...+.++++|+|++||++|..+| +. +++++++.++..+ +++++++++++|.+..
T Consensus 203 ----------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~ 257 (306)
T 3vis_A 203 ----------------------NKSWRDITVPTLIIGAEYDTIAS--VTLHSKPFYNSIPSPT-DKAYLELDGASHFAPN 257 (306)
T ss_dssp ----------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGG
T ss_pred ----------------------ccccccCCCCEEEEecCCCcccC--cchhHHHHHHHhccCC-CceEEEECCCCccchh
Confidence 12345678999999999999998 77 6999999988766 8999999999999753
Q ss_pred cccHHHHHHHHHHHHHHhhccC
Q 002164 880 RESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
+....+.+.+.+||++++...
T Consensus 258 -~~~~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 258 -ITNKTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp -SCCHHHHHHHHHHHHHHHSCC
T ss_pred -hchhHHHHHHHHHHHHHccCc
Confidence 333677889999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-16 Score=175.58 Aligned_cols=355 Identities=14% Similarity=0.077 Sum_probs=215.7
Q ss_pred eceeEEEccCCCCCCce-eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|++|++.+ ++. +.+. .+..+..++|||||++|+++.. ....|+++++.+++.......+..
T Consensus 12 ~~v~v~d~~~----~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~- 75 (391)
T 1l0q_A 12 DNISVIDVTS----NKVTATIP---VGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS- 75 (391)
T ss_dssp TEEEEEETTT----TEEEEEEE---CSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS-
T ss_pred CEEEEEECCC----CeEEEEee---cCCCcceEEECCCCCEEEEECC--------CCCeEEEEECCCCeEEEEEECCCC-
Confidence 4789999854 332 2332 2235788999999999877642 246899999998887665544442
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+..++|+|||+.|+++.. ....|+++++
T Consensus 76 ----v~~~~~spdg~~l~~~~~------------------------------------------------~~~~v~v~d~ 103 (391)
T 1l0q_A 76 ----PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDT 103 (391)
T ss_dssp ----EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ----ccceEECCCCCEEEEEEC------------------------------------------------CCCEEEEEEC
Confidence 678999999999887610 1246889998
Q ss_pred -CCeeeecCC-CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~~-~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+++...... ...+..++|+|||++|+++... .+.|++||+.+++........ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~ 158 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------R 158 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------S
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEecC-------------C
Confidence 776544433 3567889999999999877633 348999999876554332211 2
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+..+.|+|||+.+++. ....+.|++||+ .+++..........+..+.|+|||+.|+.......
T Consensus 159 ~~~~~~~~~dg~~l~~~------------~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~- 222 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVA------------NFDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY- 222 (391)
T ss_dssp SEEEEEECTTSSEEEEE------------ETTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred CcceEEECCCCCEEEEE------------eCCCCEEEEEEC---CCCeEEEEEecCCCccceEECCCCCEEEEEecCcC-
Confidence 34678999999988663 123467999996 44444444444455677899999999988865211
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
...|+++++.++ +......... .... +.|+|||++|++... ....|++||+
T Consensus 223 ~~~v~~~d~~~~--~~~~~~~~~~-~~~~------~~~s~dg~~l~~s~~--------------------~d~~v~v~d~ 273 (391)
T 1l0q_A 223 FNTVSMIDTGTN--KITARIPVGP-DPAG------IAVTPDGKKVYVALS--------------------FXNTVSVIDT 273 (391)
T ss_dssp CCEEEEEETTTT--EEEEEEECCS-SEEE------EEECTTSSEEEEEET--------------------TTTEEEEEET
T ss_pred CCcEEEEECCCC--eEEEEEecCC-CccE------EEEccCCCEEEEEcC--------------------CCCEEEEEEC
Confidence 246888888774 2222222221 1122 789999998876641 1136999999
Q ss_pred CCCceEEEecCCccccc-ceeEeecCCC---ccccccccC--------CEEEEEEecCCCCceEEEEECCCCCeeEeecC
Q 002164 560 NTGSKERIWESDKEKYY-ETTVALMSDQ---TEGDLYLNQ--------LKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (958)
Q Consensus 560 ~~g~~~~l~~~~~~~~~-~~~~~~~~~~---~~~~~s~dg--------~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~ 627 (958)
++++...........+. .......... ....|+.+. ..+.+. +.......|+|+..+|......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~--~~~~~~~~~~W~~~~g~~~~~~-- 349 (391)
T 1l0q_A 274 ATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFT--DLSKDATEWKWDFGDGSSSKKQ-- 349 (391)
T ss_dssp TTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEE--ECCBSCSEEEEECSSSCEECSS--
T ss_pred CCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEE--eCCCCceEEEEECCCCcccCcC--
Confidence 98887665443322110 0000000000 012233322 113333 2233456889998887643221
Q ss_pred CCCCCCCCC--CcEEEEEEEeCCC--eEEEEEEEecC
Q 002164 628 PHPYPQLAS--LQKELIKYQRKDG--VQLSATLYLPP 660 (958)
Q Consensus 628 ~~~~~~~~~--~~~~~~~~~~~dg--~~l~~~l~~P~ 660 (958)
+ +...+.. .-...+++.+.+| .++....+.++
T Consensus 350 ~-~~~~~~~~g~y~~~~~~~~~~g~~~~~~~~~v~~~ 385 (391)
T 1l0q_A 350 N-PTHTYSETGIYTVRLTVSNSNGTDSQISTVNVVLK 385 (391)
T ss_dssp S-CEECCSSCEEEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred C-CeEEeCCCceEEEEEEEECCCCcEEEEEEEEEEcC
Confidence 1 1112222 2244667788888 35666666654
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=174.86 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=125.1
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc-----chhhHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA-----NDRFVEQLVACA 743 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~-----~~~~~~~~~~D~ 743 (958)
..++||++||..... ..+. ..+..|...||.|++++..+..+++.... ...........+
T Consensus 21 a~~~Vv~lHG~G~~~-----------~~~~----~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~~~~~~~~~~i 85 (210)
T 4h0c_A 21 AKKAVVMLHGRGGTA-----------ADII----SLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQPALDSALALV 85 (210)
T ss_dssp CSEEEEEECCTTCCH-----------HHHH----GGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCH-----------HHHH----HHHHHhCCCCeEEEeecCCCCCccccccCCCcccchHHHHHHHHHH
Confidence 368999999942110 0110 11234455899999977654433332211 112233334445
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcc
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPF 823 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 823 (958)
...++.+.+. .+|++||+|+|+|+||++|+.++.++|++|+++|+.+|........ . ...
T Consensus 86 ~~~~~~~~~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~---------~-------~~~--- 145 (210)
T 4h0c_A 86 GEVVAEIEAQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA---------I-------GNY--- 145 (210)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC---------G-------GGC---
T ss_pred HHHHHHHHHh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh---------h-------hhh---
Confidence 5555555554 4799999999999999999999999999999999998743210000 0 000
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.....++|+|++||++|++|| ++.++++++.|+..|.++++.+||+++|.+.. +.++.+.+||.
T Consensus 146 -~~~~~~~Pvl~~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~ 209 (210)
T 4h0c_A 146 -KGDFKQTPVFISTGNPDPHVP--VSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTIL 209 (210)
T ss_dssp -CBCCTTCEEEEEEEESCTTSC--HHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTT
T ss_pred -hhhccCCceEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHc
Confidence 011235799999999999999 99999999999999999999999999999852 23455666654
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=170.49 Aligned_cols=185 Identities=16% Similarity=0.106 Sum_probs=138.8
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCC----------------CCCCCCCcc
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDEE 730 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~----------------~~~G~G~~~ 730 (958)
+.|+||++||.... ...| ......|++ +||.|++++.. +..|+|.+.
T Consensus 13 ~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~ 77 (218)
T 1auo_A 13 ADACVIWLHGLGAD-----------RYDF----MPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPAR 77 (218)
T ss_dssp CSEEEEEECCTTCC-----------TTTT----HHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSC
T ss_pred CCcEEEEEecCCCC-----------hhhH----HHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccc
Confidence 48999999996421 1112 245667777 99999997642 344555432
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEeccCCCCCCCCCCcccccc
Q 002164 731 AN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNEDR 808 (958)
Q Consensus 731 ~~-~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~ 808 (958)
.. ........+|+..+++++.+ ..+++++++++|||+||.+++.++. ++|++++++|+++|..... . +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~--~--~~---- 148 (218)
T 1auo_A 78 SISLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF--G--DE---- 148 (218)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC--C--TT----
T ss_pred ccchHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc--h--hh----
Confidence 22 23345667788888888876 3478889999999999999999999 9999999999999876530 0 00
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHH
Q 002164 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLW 888 (958)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~ 888 (958)
......++++|+|++||++|..+| ++.++++++.++..|.++++++++ ++|.+. .+..+
T Consensus 149 -------------~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~ 207 (218)
T 1auo_A 149 -------------LELSASQQRIPALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIH 207 (218)
T ss_dssp -------------CCCCHHHHTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHH
T ss_pred -------------hhhhhcccCCCEEEEEeCCCceec--HHHHHHHHHHHHhCCCceEEEEec-CCCccC-----HHHHH
Confidence 000112457899999999999998 999999999999998899999999 999874 23467
Q ss_pred HHHHHHHHhh
Q 002164 889 ETDRWLQKYC 898 (958)
Q Consensus 889 ~i~~fl~~~l 898 (958)
.+.+||.+++
T Consensus 208 ~~~~~l~~~l 217 (218)
T 1auo_A 208 DIGAWLAARL 217 (218)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8899999886
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-18 Score=173.74 Aligned_cols=214 Identities=16% Similarity=0.109 Sum_probs=153.6
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+...+|.. .++|.|.+ +.|+||++||...... .| ...+..|+++||.|+++ +.
T Consensus 7 ~~~~~g~~--~~~~~~~~-------~~~~vv~~hG~~~~~~-----------~~----~~~~~~l~~~G~~v~~~---d~ 59 (238)
T 1ufo_A 7 RLTLAGLS--VLARIPEA-------PKALLLALHGLQGSKE-----------HI----LALLPGYAERGFLLLAF---DA 59 (238)
T ss_dssp EEEETTEE--EEEEEESS-------CCEEEEEECCTTCCHH-----------HH----HHTSTTTGGGTEEEEEC---CC
T ss_pred ccccCCEE--EEEEecCC-------CccEEEEECCCcccch-----------HH----HHHHHHHHhCCCEEEEe---cC
Confidence 33446654 45677754 3799999999642111 11 11233567889999994 45
Q ss_pred CCCCCcccch---h----------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEe
Q 002164 724 IGEGDEEAND---R----------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (958)
Q Consensus 724 ~G~G~~~~~~---~----------~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (958)
+|+|.+.... . ......+|+.++++++.+++. ++++++|||+||.+++.++.++|+++++++..
T Consensus 60 ~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 136 (238)
T 1ufo_A 60 PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFI 136 (238)
T ss_dssp TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEES
T ss_pred CCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEe
Confidence 5666653321 1 245678899999999988754 69999999999999999999999989998888
Q ss_pred ccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHH-hCCC-cEEE
Q 002164 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALK-GHGA-LCRL 867 (958)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~-~~g~-~~~~ 867 (958)
++..........+. .+ .....+...++...+.++ ++|+|++||++|..+| +..+.++++.++ ..|. ++++
T Consensus 137 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 209 (238)
T 1ufo_A 137 GSGFPMKLPQGQVV----ED-PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGRLAR 209 (238)
T ss_dssp CCSSCCCCCTTCCC----CC-HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCCEEE
T ss_pred cCCccchhhhhhcc----CC-cccchhhcCChhhhhhhccCCcEEEEECCCCCccC--cHHHHHHHHHHhhcCCCCceEE
Confidence 76533221111100 00 113344556677777788 8999999999999998 899999999999 8877 8999
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 868 VILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 868 ~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+++++++|.+. .+..+.+.+||.+++.
T Consensus 210 ~~~~~~~H~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 210 FVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp EEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcccH-----HHHHHHHHHHHHHHHh
Confidence 99999999974 2456788899998875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=175.07 Aligned_cols=301 Identities=9% Similarity=0.001 Sum_probs=195.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhc---------ccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCcee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEEL---------ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~ 180 (958)
.+..++|||||+.+++............ .++...+..+.+++++......+ ++.|.+|++..........
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 4667889999999987765422222111 12334445667777665555444 6789999996532222222
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEE
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+........+....|+|||+.|+.... ...|.+|++.+++.... ...... .+..++|+|||+.|
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVC 156 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcC---------CCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEE
Confidence 3321123357889999999999988652 56899999988763222 111221 16689999999998
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~ 335 (958)
+... ....|.++++ +++.. .+... ..+.
T Consensus 157 ~~~~-------------------------------------------------~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 157 FSCC-------------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEe-------------------------------------------------CCCcEEEEeCCCCceeeeeecccCceE
Confidence 8761 2245788888 66543 44433 6788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.++|+|||+.|+.... ++.+.+||+.++......... ..+..+.|+|||+.+++
T Consensus 188 ~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGL-------------DNTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEECTTSSEEEEEET-------------TSEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCEEEEEec-------------CCcEEEEECCCCceEeeecCC-------------CceEEEEECCCCCEEEE
Confidence 9999999999998773 348999999866544332211 34567999999998877
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
. ...+.+++|++ .+++...+......+..+.|+|||+.|+.....+ .|.++++..+ +.
T Consensus 242 ~-------------~~~~~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~--~~ 299 (337)
T 1gxr_A 242 G-------------MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--AS 299 (337)
T ss_dssp E-------------ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CE
T ss_pred E-------------cCCCcEEEEEC---CCCCeEEEcCCccceeEEEECCCCCEEEEecCCC----cEEEEECCCC--eE
Confidence 3 34567899996 5555556666667788899999999888765432 3666666664 22
Q ss_pred EEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..... ....+.. +.|+|||++|+...
T Consensus 300 ~~~~~-~~~~v~~------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 300 IFQSK-ESSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp EEEEE-CSSCEEE------EEECTTSCEEEEEE
T ss_pred EEEec-CCCcEEE------EEECCCCCEEEEec
Confidence 22221 2222222 78999999888776
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=180.65 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
...++..+|..+.+.+|.|.+ ++.|+||++|||++..++ ...| ...+..|+++||.|+++++
T Consensus 40 ~~~i~~~~~~~~~~~~~~p~~------~~~p~vv~~HGgg~~~~~--------~~~~----~~~~~~l~~~G~~v~~~d~ 101 (262)
T 2pbl_A 40 RLNLSYGEGDRHKFDLFLPEG------TPVGLFVFVHGGYWMAFD--------KSSW----SHLAVGALSKGWAVAMPSY 101 (262)
T ss_dssp EEEEESSSSTTCEEEEECCSS------SCSEEEEEECCSTTTSCC--------GGGC----GGGGHHHHHTTEEEEEECC
T ss_pred ccccccCCCCCceEEEEccCC------CCCCEEEEEcCcccccCC--------hHHH----HHHHHHHHhCCCEEEEeCC
Confidence 344554566667778898864 237999999997532211 1112 1335578899999999666
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEEEEeccCC
Q 002164 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGIARSGAY 794 (958)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~~~~ 794 (958)
+ |.+. .......+|+.++++++..+.. ++++|+|||+||.+++.++.+. |++++++|+++|++
T Consensus 102 ~---~~~~-----~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~ 170 (262)
T 2pbl_A 102 E---LCPE-----VRISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLS 170 (262)
T ss_dssp C---CTTT-----SCHHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCC
T ss_pred C---CCCC-----CChHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCcc
Confidence 4 4432 2356778999999999998753 6999999999999999999887 78999999999987
Q ss_pred CCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 795 NRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
+.......+ ...........+...+|...+.++++|+|++||++|..++ ++++.++++.++ ++++++|+++
T Consensus 171 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~-----~~~~~~~~~~ 241 (262)
T 2pbl_A 171 DLRPLLRTS--MNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEKH 241 (262)
T ss_dssp CCGGGGGST--THHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTCC
T ss_pred CchHHHhhh--hhhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCccc--HHHHHHHHHHhC-----CeEEEeCCCC
Confidence 642111000 0111122345566778888888899999999999999988 899999999886 6899999999
Q ss_pred ccCC
Q 002164 875 HGYA 878 (958)
Q Consensus 875 H~~~ 878 (958)
|...
T Consensus 242 H~~~ 245 (262)
T 2pbl_A 242 HFNV 245 (262)
T ss_dssp TTTT
T ss_pred cchH
Confidence 9874
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=184.89 Aligned_cols=242 Identities=13% Similarity=0.074 Sum_probs=160.5
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+..+.+++++.||..+.++.+.|........++.|+||++||.+.....+.... .....+..|+++||.|+
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~---------~~~~~a~~l~~~G~~vi 95 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL---------PNNSLAFILADAGYDVW 95 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSC---------TTTCHHHHHHHTTCEEE
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCC---------CcccHHHHHHHCCCCEE
Confidence 456788899999999999888765321001124789999999753322111100 01234567889999999
Q ss_pred EcCCCCCCCCCCcccc-----------hhhHHHHHH-HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--
Q 002164 717 GGPTTPIIGEGDEEAN-----------DRFVEQLVA-CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-- 782 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~-----------~~~~~~~~~-D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-- 782 (958)
+ .+.+|+|.+... ......... |+.++++++.++. +.++++++||||||.+++.++.++|+
T Consensus 96 ~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~ 170 (377)
T 1k8q_A 96 L---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLA 170 (377)
T ss_dssp E---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHH
T ss_pred E---ecCCCCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhh
Confidence 9 555677776541 123456666 9999999988762 34689999999999999999999988
Q ss_pred -ceeEEEEeccCCCCCCCCCCcc-------------------cccchhh-------------------------------
Q 002164 783 -LFCCGIARSGAYNRTLTPFGFQ-------------------NEDRTLW------------------------------- 811 (958)
Q Consensus 783 -~~~a~v~~~~~~~~~~~~~~~~-------------------~~~~~~~------------------------------- 811 (958)
+++++|+++|..........+. ......+
T Consensus 171 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (377)
T 1k8q_A 171 KRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMN 250 (377)
T ss_dssp TTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGG
T ss_pred hhhhEEEEeCCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCccc
Confidence 8999999998754321100000 0000000
Q ss_pred ---h----------------------------------------cHHHHHhc-CcccccCCCCCCEEEEeeCCCCCCCCC
Q 002164 812 ---E----------------------------------------ATSTYVEM-SPFMSANKLKKPILLVHGEEDNNSGTL 847 (958)
Q Consensus 812 ---~----------------------------------------~~~~~~~~-sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (958)
. +...+... .+...+.++++|+|++||++|..+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-- 328 (377)
T 1k8q_A 251 LNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD-- 328 (377)
T ss_dssp SCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC--
T ss_pred CCHHHHHHHhccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccC--
Confidence 0 00000000 0122367889999999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC--cccHHHHHHHHHHHHHHh
Q 002164 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAA--RESIMHVLWETDRWLQKY 897 (958)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~--~~~~~~~~~~i~~fl~~~ 897 (958)
++.+.++++.+... .+++++|++||.... .+....+.+.|.+||.++
T Consensus 329 ~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 329 PHDVDLLLSKLPNL---IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp HHHHHHHHTTCTTE---EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCc---ccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 88888887766442 258999999998642 356678889999999763
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=191.25 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=161.1
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+.++++. +|..+.++++.| + ..+.|+||++||+..... .+.......++++||.|+
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~~~-~-----~~~~p~vv~~HG~~~~~~--------------~~~~~~~~~~~~~g~~vi 191 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAIIS-E-----DKAQDTLIVVGGGDTSRE--------------DLFYMLGYSGWEHDYNVL 191 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEECC-S-----SSCCCEEEEECCSSCCHH--------------HHHHHTHHHHHHTTCEEE
T ss_pred CCcEEEEEeE-CCeEEEEEEEcC-C-----CCCCCEEEEECCCCCCHH--------------HHHHHHHHHHHhCCcEEE
Confidence 3457778887 688999998843 2 223699999999531100 001111225668999999
Q ss_pred EcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 717 GGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+ .+.+|+|.+.... .+......|+.++++++..++ ++|+|+|||+||++++.++.++| +++++|+.+|+.+
T Consensus 192 ~---~D~~G~G~s~~~~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~ 263 (405)
T 3fnb_A 192 M---VDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYD 263 (405)
T ss_dssp E---ECCTTSTTGGGGTCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSC
T ss_pred E---EcCCCCcCCCCCCCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCC
Confidence 9 5556777774321 222345788899999987764 68999999999999999999997 8999999999876
Q ss_pred CCCC-----------CCCccc-------cc--chhh---------------hcHHHHHhcCcccccCCCCCCEEEEeeCC
Q 002164 796 RTLT-----------PFGFQN-------ED--RTLW---------------EATSTYVEMSPFMSANKLKKPILLVHGEE 840 (958)
Q Consensus 796 ~~~~-----------~~~~~~-------~~--~~~~---------------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~ 840 (958)
.... +..... .. ...| .....+....+...+.++++|+||+||++
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~ 343 (405)
T 3fnb_A 264 VAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAG 343 (405)
T ss_dssp HHHHHHHHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETT
T ss_pred HHHHHHHhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCC
Confidence 2110 000000 00 0000 00122223344444778899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHhhcc
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
|..+| +.++.++++.++..+.++++++++++.|. ....++...+.+.+.+||+++++.
T Consensus 344 D~~v~--~~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 344 EDSEL--MRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp SCHHH--HHHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred CcCCC--hHHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99988 99999999999999899999999665543 124667788899999999999864
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=178.02 Aligned_cols=203 Identities=16% Similarity=0.075 Sum_probs=141.3
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC--CcEEEEcCC---CCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPT---TPI 723 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~vl~~~~---~~~ 723 (958)
+.+...+..+|+. + ..+.|+||++||..... ..+. ..+..|+.+ ++.++.++. ...
T Consensus 49 ~~~~l~y~~~p~~--~--~~~~plVI~LHG~G~~~-----------~~~~----~~~~~l~~~~~~~~~v~P~Ap~~~~~ 109 (285)
T 4fhz_A 49 MTRKLTFGRRGAA--P--GEATSLVVFLHGYGADG-----------ADLL----GLAEPLAPHLPGTAFVAPDAPEPCRA 109 (285)
T ss_dssp CCCCCCEEEEESC--T--TCCSEEEEEECCTTBCH-----------HHHH----TTHHHHGGGSTTEEEEEECCSEECTT
T ss_pred ccccceeecCCCC--C--CCCCcEEEEEcCCCCCH-----------HHHH----HHHHHHHHhCCCeEEEecCCCccccc
Confidence 3333334555654 2 23589999999942110 1111 123455553 788877542 122
Q ss_pred CCCCCcccc------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 724 IGEGDEEAN------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 724 ~G~G~~~~~------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
.|.|..+.. .........++.+.++.+.++..+|++||+|+|+|+||++|+.++.++|++|+++|+++
T Consensus 110 ~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~s 189 (285)
T 4fhz_A 110 NGFGFQWFPIPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFS 189 (285)
T ss_dssp SSSCEESSCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEES
T ss_pred CCCcccccccccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEee
Confidence 344443321 01122335677777888877777999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC
Q 002164 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (958)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p 871 (958)
|... .+..+.. ..+.++|+|++||++|.+|| ++.+++++++|+..|.++++.+||
T Consensus 190 G~l~-----------------~~~~~~~------~~~~~~Pvl~~hG~~D~~Vp--~~~~~~~~~~L~~~g~~~~~~~y~ 244 (285)
T 4fhz_A 190 GRLL-----------------APERLAE------EARSKPPVLLVHGDADPVVP--FADMSLAGEALAEAGFTTYGHVMK 244 (285)
T ss_dssp CCCS-----------------CHHHHHH------HCCCCCCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEET
T ss_pred cCcc-----------------Cchhhhh------hhhhcCcccceeeCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEEC
Confidence 7421 0111111 12346899999999999999 999999999999999999999999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 872 FESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 872 ~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
++||.+. .+.+..+.+||+++|..
T Consensus 245 g~gH~i~-----~~~l~~~~~fL~~~Lpd 268 (285)
T 4fhz_A 245 GTGHGIA-----PDGLSVALAFLKERLPD 268 (285)
T ss_dssp TCCSSCC-----HHHHHHHHHHHHHHCC-
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHCcC
Confidence 9999985 33467899999999854
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=175.34 Aligned_cols=227 Identities=13% Similarity=0.092 Sum_probs=154.2
Q ss_pred cEEEEEE-EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKY-QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~-~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+.+.+++ .+.||.++....+.+.+ .+.|+||++||+.... ..+ ........++++||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~~vv~~HG~~~~~-----------~~~--~~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ------DERPTCIWLGGYRSDM-----------TGT--KALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS------TTSCEEEEECCTTCCT-----------TSH--HHHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC------CCCCeEEEECCCcccc-----------ccc--hHHHHHHHHHhCCCcEE
Confidence 3455555 56799999888776642 1268999999964210 010 11124556778999999
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CC---CceeEEE
Q 002164 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---AP---HLFCCGI 788 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~a~v 788 (958)
+ .+.+|+|.+... ........+|+.++++++. .++++++|||+||.+++.++.+ +| ++++++|
T Consensus 71 ~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~i 141 (270)
T 3llc_A 71 R---FDYSGHGASGGAFRDGTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMV 141 (270)
T ss_dssp E---ECCTTSTTCCSCGGGCCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEE
T ss_pred E---eccccCCCCCCccccccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeE
Confidence 9 555677766443 2345667888888888763 4699999999999999999999 99 8999999
Q ss_pred EeccCCCCCCCC-CC-ccc--------------------c-cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCC
Q 002164 789 ARSGAYNRTLTP-FG-FQN--------------------E-DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (958)
Q Consensus 789 ~~~~~~~~~~~~-~~-~~~--------------------~-~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (958)
+++|..+..... +. +.. . ..........+........+.++++|+|++||++|..+|
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~ 221 (270)
T 3llc_A 142 LIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVP 221 (270)
T ss_dssp EESCCTTHHHHTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSC
T ss_pred EecCcccchhhhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCC
Confidence 999875421100 00 000 0 000000112233334456677889999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+..+.++++.++. .+++++++++++|.+...+....+.+.+.+||++
T Consensus 222 --~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 222 --YQHALKLVEHLPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp --HHHHHHHHHTSCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHhcCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 8888888877654 3589999999999876666666777777777654
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=166.07 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=132.7
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC----------CCCCCCccc---chhh
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----------IIGEGDEEA---NDRF 735 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~----------~~G~G~~~~---~~~~ 735 (958)
+.| ||++||.... ...| ......|+ .||.|+.++... ..|+|.... ....
T Consensus 16 ~~p-vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~ 78 (209)
T 3og9_A 16 LAP-LLLLHSTGGD-----------EHQL----VEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLES 78 (209)
T ss_dssp SCC-EEEECCTTCC-----------TTTT----HHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHH
T ss_pred CCC-EEEEeCCCCC-----------HHHH----HHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHH
Confidence 378 9999995321 1112 13344454 789999866321 223333211 1223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHH
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (958)
......++.+.++.+.++..+|+++++|+|||+||.+++.++.++|++++++|+.+|......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------- 141 (209)
T 3og9_A 79 LDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF----------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-----------------
Confidence 455677777888888777668899999999999999999999999999999999998644211
Q ss_pred HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 816 ~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.......++|+|++||++|..+| +++++++++.|+..+.++++.+++ ++|.+. .+....+.+||+
T Consensus 142 -------~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~ 206 (209)
T 3og9_A 142 -------EQTVQLDDKHVFLSYAPNDMIVP--QKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLT 206 (209)
T ss_dssp -------CCCCCCTTCEEEEEECTTCSSSC--HHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHH
T ss_pred -------cccccccCCCEEEEcCCCCCccC--HHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHH
Confidence 01123457899999999999999 999999999999999999999998 699984 344677889988
Q ss_pred Hh
Q 002164 896 KY 897 (958)
Q Consensus 896 ~~ 897 (958)
++
T Consensus 207 ~~ 208 (209)
T 3og9_A 207 ET 208 (209)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=171.21 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=143.8
Q ss_pred EEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC--------------
Q 002164 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-------------- 721 (958)
Q Consensus 656 l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~-------------- 721 (958)
++.|+. +.+.|+||++||...... .| ......|+++||.|++++..
T Consensus 14 ~~~p~~-----~~~~~~vv~lHG~~~~~~-----------~~----~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 73 (232)
T 1fj2_A 14 AIVPAA-----RKATAAVIFLHGLGDTGH-----------GW----AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73 (232)
T ss_dssp EEECCS-----SCCSEEEEEECCSSSCHH-----------HH----HHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEEC
T ss_pred cccCCC-----CCCCceEEEEecCCCccc-----------hH----HHHHHHHhcCCcEEEecCCCcccccccccccccc
Confidence 566654 234899999999642110 01 12334455679999996432
Q ss_pred --CCCCCCCcc-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 722 --PIIGEGDEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 722 --~~~G~G~~~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+.+|+.... ..........+|+.++++++.+ ..+|+++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 74 w~d~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~ 152 (232)
T 1fj2_A 74 WFDIIGLSPDSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA 152 (232)
T ss_dssp SSCBCCCSTTCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred ccccccCCcccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence 334442111 1223356678888899998887 557888999999999999999999999999999999998654211
Q ss_pred CCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCcc
Q 002164 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (958)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~p~~~H~ 876 (958)
. + ......+.++++|+|++||++|..++ ++.+.++++.++..+.+ ++++++++++|.
T Consensus 153 ~-----------~--------~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~ 211 (232)
T 1fj2_A 153 S-----------F--------PQGPIGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHS 211 (232)
T ss_dssp G-----------S--------CSSCCCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSS
T ss_pred c-----------c--------cccccccccCCCCEEEEecCCCccCC--HHHHHHHHHHHHHhCCCCceEEEEeCCCCcc
Confidence 0 0 00112356678999999999999998 89999999999988855 999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhhcc
Q 002164 877 YAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+. .+..+.+.+||.+++..
T Consensus 212 ~~-----~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 212 SC-----QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CC-----HHHHHHHHHHHHHHSCC
T ss_pred cC-----HHHHHHHHHHHHHhcCC
Confidence 83 33458899999999854
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=197.05 Aligned_cols=237 Identities=20% Similarity=0.174 Sum_probs=163.8
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH-HHHHHCCcEEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWLARGFAILG 717 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~G~~vl~ 717 (958)
.+.++|++.||.+|.+.+|+|++ .+++|+||+.||........ ..|. ..+ +.|+++||+|+.
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~-----~~~~P~vv~~~~~g~~~~~~--------~~y~----~~~~~~la~~Gy~vv~ 71 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDVFA--------WSTQ----STNWLEFVRDGYAVVI 71 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCHHH--------HHTT----TCCTHHHHHTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEEEECCC-----CCCeeEEEEECCcCCCcccc--------ccch----hhHHHHHHHCCCEEEE
Confidence 46789999999999999999975 23589999998742111000 0010 013 688999999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC-CCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNR 796 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~~~ 796 (958)
+ +.+|+|.+.+....+....+|+.++++||.++++.+ .+|+++|+||||++++.++++.|+.++|+|+.++. .+.
T Consensus 72 ~---D~RG~G~S~g~~~~~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~ 147 (587)
T 3i2k_A 72 Q---DTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLY 147 (587)
T ss_dssp E---ECTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTC
T ss_pred E---cCCCCCCCCCccccccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccc
Confidence 4 445666665432223568999999999999988776 79999999999999999999988999999999988 664
Q ss_pred CCCC---CCcccc-cchhhhc-----------------------------------------------------------
Q 002164 797 TLTP---FGFQNE-DRTLWEA----------------------------------------------------------- 813 (958)
Q Consensus 797 ~~~~---~~~~~~-~~~~~~~----------------------------------------------------------- 813 (958)
.... -+.... ....|..
T Consensus 148 ~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3i2k_A 148 RAPWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVD 227 (587)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTT
T ss_pred ccceeecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhc
Confidence 3211 000000 0000100
Q ss_pred ----HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---------Cc
Q 002164 814 ----TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---------AR 880 (958)
Q Consensus 814 ----~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~---------~~ 880 (958)
...|...++...+++|++|+|+++|..|..+ ..+.++|++|+..+. .++++-|. .|... ..
T Consensus 228 ~~~~d~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~----~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~ 301 (587)
T 3i2k_A 228 HPDNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGI 301 (587)
T ss_dssp CCSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCG
T ss_pred CCCCChHHhcCChhhhhccCCCCEEEEccCCCccc----hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCC
Confidence 1123344556678899999999999999764 457889999987764 46776665 46531 11
Q ss_pred cc---HHHHHHHHHHHHHHhhccCC
Q 002164 881 ES---IMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 881 ~~---~~~~~~~i~~fl~~~l~~~~ 902 (958)
.. ..+..+.+++||++||++..
T Consensus 302 ~~~~~~~~~~~~~~~wFD~~Lkg~~ 326 (587)
T 3i2k_A 302 AATYPIQEATTMHKAFFDRHLRGET 326 (587)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHSCCT
T ss_pred ccccccchhhHHHHHHHHHHhcCCC
Confidence 11 12344889999999998654
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=190.93 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=153.6
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+.++++. +|..+.++++.|.+ .++.|+||++||..... ..........|+++||.|+
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~-----~~~~P~vv~~hG~~~~~--------------~~~~~~~~~~l~~~G~~V~ 225 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSLQ--------------TDMWRLFRDHLAKHDIAML 225 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCS-----SSCEEEEEEECCTTSCG--------------GGGHHHHHHTTGGGTCEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCC-----CCCCCEEEEECCCCccH--------------HHHHHHHHHHHHhCCCEEE
Confidence 3577888887 88899999999975 23589999999953110 0111223456778999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
. .+.+|+|.+...... .........+++++.+.+.+|+++|+|+|||+||++++.++...|++++++|+.+|+.+.
T Consensus 226 ~---~D~~G~G~s~~~~~~-~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~ 301 (415)
T 3mve_A 226 T---VDMPSVGYSSKYPLT-EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301 (415)
T ss_dssp E---ECCTTSGGGTTSCCC-SCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSH
T ss_pred E---ECCCCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCcccc
Confidence 9 455567666432110 111222357788888888888999999999999999999999998899999999987541
Q ss_pred CCCCCCcccc-------------cchhhhcH---HHHHhcCcccc----cCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 797 TLTPFGFQNE-------------DRTLWEAT---STYVEMSPFMS----ANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 797 ~~~~~~~~~~-------------~~~~~~~~---~~~~~~sp~~~----~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
......+... ........ ..+..+++... +.++++|+|++||++|..+| +..+.++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~l~~ 379 (415)
T 3mve_A 302 IFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSP--YSDNQMVAF 379 (415)
T ss_dssp HHHCHHHHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSC--HHHHHHHHH
T ss_pred ccccHHHHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCC--HHHHHHHHH
Confidence 1100000000 00000000 11222333222 45788999999999999998 888777665
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
.+.+++++++|+..+. .....+...+.+||.++|.
T Consensus 380 ----~~~~~~l~~i~g~~~h----~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 ----FSTYGKAKKISSKTIT----QGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp ----TBTTCEEEEECCCSHH----HHHHHHHHHHHHHHHHHHT
T ss_pred ----hCCCceEEEecCCCcc----cchHHHHHHHHHHHHHHhc
Confidence 4567899999982221 2456778899999999874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-17 Score=195.88 Aligned_cols=330 Identities=11% Similarity=0.024 Sum_probs=198.0
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC-CCCCCce
Q 002164 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQE 179 (958)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~ 179 (958)
++..++.....+. .+|||++++|...+ .+... ..||+.+... ++ +..
T Consensus 101 ~~~~~~~~~~~~~--p~pdG~~~~~~~~~----------------------~~~~~------~~l~~~~~~~~~~--~~~ 148 (741)
T 1yr2_A 101 RMKALIDYERFGL--PQRRGASVFYSWNS----------------------GLMNQ------SQLLVRPADAPVG--TKG 148 (741)
T ss_dssp HHHHHSCCCEECC--CEEETTEEEEEEEC----------------------SSCSS------CEEEEEETTSCTT--CCC
T ss_pred HHHHhhcccccCC--CEEECCEEEEEEEc----------------------CCCeE------EEEEEEcCCccCC--CCC
Confidence 3455555444444 45999999999875 11111 3678877531 02 344
Q ss_pred eeecc---CCCCC--cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC
Q 002164 180 IEIQG---FPDGA--KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 180 ~~lt~---~~~~~--~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
+.|.. ++.+. .+..++|||||++|||..+.. +.+..+||++|+++|+..+.+.... . +..++||||
T Consensus 149 ~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~tg~~~~~~~~~~-~----~~~~~wspD 219 (741)
T 1yr2_A 149 RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG----GSDWRTVKFVGVADGKPLADELKWV-K----FSGLAWLGN 219 (741)
T ss_dssp EEEECGGGCC----EEEEEEEECTTSSEEEEEEEET----TCSEEEEEEEETTTCCEEEEEEEEE-E----SCCCEESTT
T ss_pred EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCCccCCCc-e----eccEEEECC
Confidence 44421 12222 577899999999999988633 4445789999999998866522111 1 358999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~ 331 (958)
+.|+|+........ ... ... ....+||++++ ++. .+.+...
T Consensus 220 -~~l~~~~~~~~~~~---------~~~------------------~~~--------~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 220 -DALLYSRFAEPKEG---------QAF------------------QAL--------NYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp -SEEEEEECCCC-----------------------------------C--------CCCCEEEEEETTSCGGGCEEEECC
T ss_pred -CEEEEEEecCcccc---------ccc------------------ccC--------CCCCEEEEEECCCCchhCEEEecc
Confidence 99999843221100 000 000 02356999998 664 2344332
Q ss_pred ----ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--e-EEEeccCCccccCcccccccccCccee
Q 002164 332 ----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--F-VRELCDLPLAEDIPIAFNSVRKGMRSI 404 (958)
Q Consensus 332 ----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~-~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (958)
..+..+.|||||++|++.+.+.. ....+|+++|++++ + .+.|+.... ....+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~~~-------------~~~~~ 322 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGT--------DPVNTVHVARVTNGKIGPVTALIPDLK-------------AQWDF 322 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTT--------CSCCEEEEEEEETTEECCCEEEECSSS-------------SCEEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccC--------CCcceEEEEECCCCCCcccEEecCCCC-------------ceEEE
Confidence 23678899999999999985431 12458999999876 4 566654221 11223
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC--CCceEEEeec-cccCceeeecCCceEEEEEeccccce
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG--EGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
++|||+.|++.++.. .....|+++++ ++ +..+.+.... ..+..+.|+ +..|++....++. .
T Consensus 323 -~~~dg~~l~~~s~~~---------~~~~~l~~~d~---~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~-~ 386 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDG---------APLKKIVRVDL---SGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAK-S 386 (741)
T ss_dssp -EEEETTEEEEEECTT---------CTTCEEEEEEC---SSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTE-E
T ss_pred -EeccCCEEEEEECCC---------CCCCEEEEEeC---CCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCE-E
Confidence 569999999974431 23567999996 44 3445554332 233445665 5567776655543 7
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
+||+++++++ ....+.......+.. ++++|||+.|+|..... .....||+||+++
T Consensus 387 ~l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~-----------------~~P~~i~~~d~~t 441 (741)
T 1yr2_A 387 QVLAFDLDGK--PAGAVSLPGIGSASG------LSGRPGDRHAYLSFSSF-----------------TQPATVLALDPAT 441 (741)
T ss_dssp EEEEEETTSC--EEEECBCSSSCEEEE------EECCBTCSCEEEEEEET-----------------TEEEEEEEEETTT
T ss_pred EEEEEeCCCC--ceeeccCCCCeEEEE------eecCCCCCEEEEEEcCC-----------------CCCCEEEEEECCC
Confidence 8999998653 222222111122222 67899999888876421 1234699999999
Q ss_pred CceEEEec
Q 002164 562 GSKERIWE 569 (958)
Q Consensus 562 g~~~~l~~ 569 (958)
|+.+.+..
T Consensus 442 g~~~~l~~ 449 (741)
T 1yr2_A 442 AKTTPWEP 449 (741)
T ss_dssp TEEEECSC
T ss_pred CcEEEEec
Confidence 88766654
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=183.54 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=154.9
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl 716 (958)
..+.++++..+| .+.+++| |. .++.|+||++|||.+..+ +...+ ..++..|+ +.||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~------~~~~p~vv~~HGgg~~~g--------~~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ------KPDSPVLVYYHGGGFVIC--------SIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES------SSSEEEEEEECCSTTTSC--------CTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC------CCCceEEEEECCcccccC--------ChhHh----HHHHHHHHHHhCCEEE
Confidence 477888988777 8999998 42 124899999999864322 11111 23456777 5899999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEE
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIA 789 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~ 789 (958)
.+++ +|+|.+.. +....|+.++++|+.++. .+|+++|+|+|+|+||++|+.++.+.|++ ++++|+
T Consensus 115 ~~dy---rg~g~~~~-----p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 186 (311)
T 1jji_A 115 SVDY---RLAPEHKF-----PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEEC---CCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EecC---CCCCCCCC-----CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9555 46665432 345778899999998852 46788999999999999999999887655 999999
Q ss_pred eccCCCCCCCCCCc---------cccc--chhhhc----H--HHHHhcCccc-ccCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 790 RSGAYNRTLTPFGF---------QNED--RTLWEA----T--STYVEMSPFM-SANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 790 ~~~~~~~~~~~~~~---------~~~~--~~~~~~----~--~~~~~~sp~~-~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
++|..+.......+ .... ...|.. . ......+|+. .+..+ .|+||+||++|..+ .++
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~----~~~ 261 (311)
T 1jji_A 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR----DEG 261 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH----HHH
T ss_pred eCCccCCCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch----HHH
Confidence 99987743211000 0000 000100 0 0001123433 22222 59999999999874 567
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHH
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQK 896 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~ 896 (958)
.+++++|+..|+++++++|||++|.+.. .+....+.+.+.+||.+
T Consensus 262 ~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 262 EVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999998743 23456777888888864
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=172.10 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=145.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---h-hHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---R-FVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~-~~~~~~~D~~~ 745 (958)
.|+||++||..... .. ....+..|+++||.|++ .+.+|+|.+.... . ......+|+.+
T Consensus 22 ~~~vv~~HG~~~~~-----------~~----~~~~~~~l~~~G~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~d~~~ 83 (251)
T 3dkr_A 22 DTGVVLLHAYTGSP-----------ND----MNFMARALQRSGYGVYV---PLFSGHGTVEPLDILTKGNPDIWWAESSA 83 (251)
T ss_dssp SEEEEEECCTTCCG-----------GG----GHHHHHHHHHTTCEEEE---CCCTTCSSSCTHHHHHHCCHHHHHHHHHH
T ss_pred CceEEEeCCCCCCH-----------HH----HHHHHHHHHHCCCEEEe---cCCCCCCCCChhhhcCcccHHHHHHHHHH
Confidence 68899999964211 11 13456778899999999 5556777763321 2 34566889999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc-------------cc----
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-------------DR---- 808 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-------------~~---- 808 (958)
+++++.++ .++++++|||+||.+++.++.++|++++++++.+|.............. ..
T Consensus 84 ~i~~l~~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 3dkr_A 84 AVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQIL 159 (251)
T ss_dssp HHHHHHTT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHH
Confidence 99999877 4699999999999999999999999999999998876532110000000 00
Q ss_pred -hhhhcHHHHHhc--CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002164 809 -TLWEATSTYVEM--SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (958)
Q Consensus 809 -~~~~~~~~~~~~--sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~ 885 (958)
........+... .....+.++++|+|+++|++|..+| +..+.++++.+... .+++++++++++|.+....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~ 236 (251)
T 3dkr_A 160 AYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVD--GRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHA 236 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBC--TTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccC--hHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhH
Confidence 000000000000 1234567788999999999999998 89999999888764 56899999999999865555788
Q ss_pred HHHHHHHHHHHhh
Q 002164 886 VLWETDRWLQKYC 898 (958)
Q Consensus 886 ~~~~i~~fl~~~l 898 (958)
+.+.+.+||+++.
T Consensus 237 ~~~~i~~fl~~~~ 249 (251)
T 3dkr_A 237 LEEDVIAFMQQEN 249 (251)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhc
Confidence 8999999998753
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-16 Score=186.06 Aligned_cols=369 Identities=11% Similarity=0.082 Sum_probs=204.4
Q ss_pred CCCCceecCCCCEEEEEecCC-----------CCCchhcccccceeeceeecCCCCC-ccceeeEeceeEEEccCCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRA-----------LPPLEELARPEEKLAGLRIDGKCNT-RSRMSFYTGIGIHQLFPDGKLG 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~dg~~~ 177 (958)
.+..++|||||++||....+. ...+..+.++...+..+.+.+++.. ....+.++.|.+|+... + .
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~--~ 181 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-F--K 181 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-B--E
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-C--e
Confidence 567899999999999876431 1223345566677778888887653 45555567899999743 1 1
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC---ccccccccceEEecC
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD---IYLNAIFDNFVWVNN 254 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~---~~~~~~~~~~~wspD 254 (958)
....+.++ ...+...+|||||+.|+... ....|.+|++.+|+......... ......+..++|+||
T Consensus 182 ~~~~l~~H--~~~V~~v~fspdg~~las~s---------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 182 FKSTFGEH--TKFVHSVRYNPDGSLFASTG---------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp EEEEECCC--SSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred Eeeeeccc--cCceEEEEECCCCCEEEEEE---------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence 23344432 34789999999999988865 25678899988877654331100 001122778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccch----hhhh-cc-CchhhhHHHHhhcceEEEEEc-CCeee-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT----FQDL-LK-DEYDEDLFDYYATTQLVLVSL-DGTVK- 326 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~d~-~~-~~~~~~~~~~~~~~~l~~~~~-~g~~~- 326 (958)
|+.|+....+... ++++........... ..+. .. ...+..+........+.+++. +++..
T Consensus 251 g~~l~s~s~D~~v------------~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 251 GTKIASASADKTI------------KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SSEEEEEETTSEE------------EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCeE------------EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 9999877443221 122221111000000 0000 00 000000000012344556666 55433
Q ss_pred ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc--CCcc--------c-------
Q 002164 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LPLA--------E------- 388 (958)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~--~~~~--------~------- 388 (958)
.+... ..+..++|||||++|+..+.+ +.|.+||+.++....+.. +... +
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D-------------~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAE-------------GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 33333 678899999999999887743 367777776543322110 0000 0
Q ss_pred --------------------------cCcc--cc--c-----------------------ccccCcceeeeecCCCCceE
Q 002164 389 --------------------------DIPI--AF--N-----------------------SVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 389 --------------------------~~p~--~~--~-----------------------~~~~~~~~~~~spDG~~l~~ 415 (958)
..+. .+ + .....+..++|||||+.|+.
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence 0000 00 0 00012234667777766555
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~ 493 (958)
- +..+.|++|++ .++....+ ..+...+..++|||||+.|+..+.... .++|.+..... .
T Consensus 466 g-------------s~D~~v~lwd~---~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~--v~~w~~~~~~~-~ 526 (611)
T 1nr0_A 466 G-------------GQDSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK--VIPYSVANNFE-L 526 (611)
T ss_dssp E-------------ETTSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC--EEEEEGGGTTE-E
T ss_pred e-------------CCCCeEEEEEc---cCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC--EEEEEcCCCCc-e
Confidence 2 44567888885 44433222 344566788999999999987765443 55665432110 0
Q ss_pred CcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
........+...+.. ++|||||++|+....+ ..|.+||+++++
T Consensus 527 ~~~~~~~~H~~~V~~------v~fspdg~~lasgs~D---------------------~~v~lW~~~~~~ 569 (611)
T 1nr0_A 527 AHTNSWTFHTAKVAC------VSWSPDNVRLATGSLD---------------------NSVIVWNMNKPS 569 (611)
T ss_dssp SCCCCCCCCSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTCTT
T ss_pred eeeeeeeecccceeE------EEECCCCCEEEEEECC---------------------CcEEEEECCCcc
Confidence 000011112333333 8899999999887632 249999998765
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=164.03 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=138.2
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH--CCcEEEEcCCC----------------CCCCCCCc
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTT----------------PIIGEGDE 729 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~vl~~~~~----------------~~~G~G~~ 729 (958)
.+.|+||++||+.... .. .......|++ +||.|++++.. +.+|+|.+
T Consensus 22 ~~~~~vv~lHG~~~~~-----------~~----~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 86 (226)
T 3cn9_A 22 NADACIIWLHGLGADR-----------TD----FKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA 86 (226)
T ss_dssp TCCEEEEEECCTTCCG-----------GG----GHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST
T ss_pred CCCCEEEEEecCCCCh-----------HH----HHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc
Confidence 3589999999964211 11 1244567777 99999996653 44466543
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEeccCCCCCCCCCCccccc
Q 002164 730 EAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTPFGFQNED 807 (958)
Q Consensus 730 ~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~~~~~~~~~~ 807 (958)
... ........+++..+++++.+. .+++++++|+|||+||.+++.++. +.|++++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------- 157 (226)
T 3cn9_A 87 RAIDEDQLNASADQVIALIDEQRAK-GIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------- 157 (226)
T ss_dssp TCBCHHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG--------
T ss_pred ccccchhHHHHHHHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh--------
Confidence 222 233456677777888877763 467789999999999999999999 999999999999986432100
Q ss_pred chhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002164 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (958)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 887 (958)
+ .. ...++++|+|+++|++|..+| ++.+.++++.++..|.++++++++ ++|.+. .+..
T Consensus 158 ---------~-~~----~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~ 215 (226)
T 3cn9_A 158 ---------L-AL----DERHKRIPVLHLHGSQDDVVD--PALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEI 215 (226)
T ss_dssp ---------C-CC----CTGGGGCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHH
T ss_pred ---------h-hh----cccccCCCEEEEecCCCCccC--HHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhH
Confidence 0 01 113467899999999999999 999999999999998899999999 999874 2346
Q ss_pred HHHHHHHHHhh
Q 002164 888 WETDRWLQKYC 898 (958)
Q Consensus 888 ~~i~~fl~~~l 898 (958)
+.+.+||.++|
T Consensus 216 ~~i~~~l~~~l 226 (226)
T 3cn9_A 216 HDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 77999998874
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=163.63 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=135.6
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---------chhhHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (958)
+.|+||++||+... ...| ......|++ ||.|++++. +.+|+|.+.. ........
T Consensus 37 ~~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~-g~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2h1i_A 37 SKPVLLLLHGTGGN-----------ELDL----LPLAEIVDS-EASVLSVRG-NVLENGMPRFFRRLAEGIFDEEDLIFR 99 (226)
T ss_dssp TSCEEEEECCTTCC-----------TTTT----HHHHHHHHT-TSCEEEECC-SEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCcEEEEEecCCCC-----------hhHH----HHHHHHhcc-CceEEEecC-cccCCcchhhccccCccCcChhhHHHH
Confidence 47999999996421 1112 234555666 999999632 4556665421 11223344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
+.++.+.++++.++..+++++++++|||+||.+++.++.++|++++++|+++|......
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------- 158 (226)
T 2h1i_A 100 TKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------
T ss_pred HHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc---------------------
Confidence 56677777777777667889999999999999999999999999999999998754211
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
......+++|+|+++|++|..++ +..++++++.++..+.++++ ++++++|.+. .+..+.+.+||.++|
T Consensus 159 ---~~~~~~~~~p~l~~~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 159 ---MQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp ---CCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ---cccccccCCcEEEEeCCCCCcCC--HHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 11123347899999999999998 89999999999998889999 9999999983 345678899998764
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=192.07 Aligned_cols=248 Identities=13% Similarity=0.141 Sum_probs=160.6
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcc------cC--CCCCCCCcCcHHHHHH
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV------RG--SPNEFPRIGSTSVLLW 708 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~l 708 (958)
+..+.++|+++||.+|.+.+|+|++ .+++|+||+.||...........+ .+ ....+..+....++.|
T Consensus 39 ~~~~~v~i~~~DG~~L~a~l~~P~~-----~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 113 (560)
T 3iii_A 39 IMEKDGTVEMRDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFW 113 (560)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECSS-----SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHH
T ss_pred EEEEEEEEECCCCcEEEEEEEecCC-----CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHH
Confidence 3467899999999999999999975 245999999998432210000000 00 0001110101125789
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 709 LARGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 709 a~~G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
+++||+|+.+|+ +|+|.+.+. ..+.....+|+.++++||.+++++| .||+++|+||||++++.+|+..|+.++|+
T Consensus 114 a~~Gy~vv~~D~---RG~G~S~G~~~~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 114 VPNDYVVVKVAL---RGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GGGTCEEEEEEC---TTSTTCCSCBCTTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred HhCCCEEEEEcC---CCCCCCCCccccCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 999999999554 566655443 2334578999999999999998887 89999999999999999999998999999
Q ss_pred EEeccCCCCCC---CCCCccccc-chhh----------------------hc---HHHHHhcCcccccCCCCCCEEEEee
Q 002164 788 IARSGAYNRTL---TPFGFQNED-RTLW----------------------EA---TSTYVEMSPFMSANKLKKPILLVHG 838 (958)
Q Consensus 788 v~~~~~~~~~~---~~~~~~~~~-~~~~----------------------~~---~~~~~~~sp~~~~~~~~~P~Lii~G 838 (958)
|+.+|+.|... ..-+..... ...| .. .+.|...++ .+++|++|+|+++|
T Consensus 190 v~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vPvl~v~G 267 (560)
T 3iii_A 190 IPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTPLLTCAS 267 (560)
T ss_dssp EEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSCEEEEEE
T ss_pred EecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCCEEEeCC
Confidence 99999877321 000000000 0011 00 012223333 57889999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
..|..+. ...+.+.|++++..+ +.+.+.+ .+|+. ........+..++||++||++..
T Consensus 268 w~D~~~~--~~g~l~~y~~l~~~~--k~l~ih~-~~~~~--~~~~~~~~~~~~~wfD~~LkG~~ 324 (560)
T 3iii_A 268 WSTQGLH--NRGSFEGFKQAASEE--KWLYVHG-RKEWE--SYYARENLERQKSFFDFYLKEEN 324 (560)
T ss_dssp GGGTTTT--HHHHHHHHHHCCCSS--EEEEEES-SCHHH--HHHSHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCccc--chhHHHHHHhccccC--cEEEECC-CCCcC--cccChhHHHHHHHHHHHHhCCCC
Confidence 9997554 567777888776542 3444433 23331 00012456788999999998654
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=179.44 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=148.4
Q ss_pred EEEEEEE---eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 639 KELIKYQ---RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 639 ~~~~~~~---~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
...++|. ..+|..+.+++|.|++.. .+.|+||++||+..... . +.......++++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~~----~~~p~vv~lHG~~~~~~-----------~---~~~~~~~~l~~~g~~v 85 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGYT----PDRPVVVVQHGVLRNGA-----------D---YRDFWIPAADRHKLLI 85 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTCC----TTSCEEEEECCTTCCHH-----------H---HHHHTHHHHHHHTCEE
T ss_pred CceEEecccCCCCCceEEEEEEeCCCCC----CCCcEEEEeCCCCCCHH-----------H---HHHHHHHHHHHCCcEE
Confidence 3456666 678889999999998642 23799999999753211 0 1012355677899999
Q ss_pred EEcCCCCC---------CCC--CCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-c
Q 002164 716 LGGPTTPI---------IGE--GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-L 783 (958)
Q Consensus 716 l~~~~~~~---------~G~--G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~ 783 (958)
+.++++.. .|+ |.+..........+.|+.++++++.++..+|+++|+|+|||+||.+++.++.++|+ +
T Consensus 86 ~~~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 165 (304)
T 3d0k_A 86 VAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAP 165 (304)
T ss_dssp EEEECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTT
T ss_pred EEeCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCc
Confidence 99777632 033 33322211222345678899999999877899999999999999999999999985 7
Q ss_pred eeEEEEec-cCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCC--CC-------------
Q 002164 784 FCCGIARS-GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG--TL------------- 847 (958)
Q Consensus 784 ~~a~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~--~~------------- 847 (958)
++++|+.+ |.++.......+...... ...+|......+++|+|++||++|..+. .+
T Consensus 166 ~~~~vl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~ 237 (304)
T 3d0k_A 166 FHAVTAANPGWYTLPTFEHRFPEGLDG--------VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHR 237 (304)
T ss_dssp CSEEEEESCSSCCCSSTTSBTTTSSBT--------TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSH
T ss_pred eEEEEEecCcccccCCccccCccccCC--------CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccH
Confidence 88888655 554422111000000000 0112222223346899999999998741 00
Q ss_pred hHHHHHHHHHHH----hCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 848 TMQSDRFFNALK----GHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 848 ~~~~~~~~~~l~----~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
...+.++++.++ ..|++ ++++++||++|.+ ......+.+||....
T Consensus 238 ~~~~~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~------~~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 238 YARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDG------QAMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEEEETTCCSCH------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEeCCCCCch------HHHHHHHHHHHhhhh
Confidence 245667788776 66776 9999999999997 234567788876543
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=161.21 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=139.0
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcH--HHHHHHHCCcEEE
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST--SVLLWLARGFAIL 716 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~G~~vl 716 (958)
.+...++ .+|.++++++|.|.+ +.|+||++||+.... ..| .. ....|+++||.|+
T Consensus 4 ~~~~~~~-~~g~~l~~~~~~~~~-------~~~~vv~~hG~~~~~-----------~~~----~~~~~~~~l~~~G~~v~ 60 (207)
T 3bdi_A 4 LQEEFID-VNGTRVFQRKMVTDS-------NRRSIALFHGYSFTS-----------MDW----DKADLFNNYSKIGYNVY 60 (207)
T ss_dssp CEEEEEE-ETTEEEEEEEECCTT-------CCEEEEEECCTTCCG-----------GGG----GGGTHHHHHHTTTEEEE
T ss_pred ceeEEEe-eCCcEEEEEEEeccC-------CCCeEEEECCCCCCc-----------ccc----chHHHHHHHHhCCCeEE
Confidence 3444444 489999999999864 268999999964221 111 23 5678899999999
Q ss_pred EcCCCCCCCCCCc---ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDE---EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~---~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.++ .+|+|.+ ....... ....++.+.+..+.++ .+.++++++|||+||.+++.++.+.|++++++++.+|.
T Consensus 61 ~~d---~~g~g~s~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~ 134 (207)
T 3bdi_A 61 APD---YPGFGRSASSEKYGIDR-GDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPA 134 (207)
T ss_dssp EEC---CTTSTTSCCCTTTCCTT-CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred EEc---CCcccccCcccCCCCCc-chHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCc
Confidence 954 4566666 3321110 0233333444444443 24469999999999999999999999999999999886
Q ss_pred CCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 794 YNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
... .+ ...+.++++|+|+++|++|..++ +....++++.++ ++++++++++
T Consensus 135 ~~~---~~---------------------~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~ 184 (207)
T 3bdi_A 135 WVE---SL---------------------KGDMKKIRQKTLLVWGSKDHVVP--IALSKEYASIIS----GSRLEIVEGS 184 (207)
T ss_dssp SCG---GG---------------------HHHHTTCCSCEEEEEETTCTTTT--HHHHHHHHHHST----TCEEEEETTC
T ss_pred ccc---ch---------------------hHHHhhccCCEEEEEECCCCccc--hHHHHHHHHhcC----CceEEEeCCC
Confidence 210 00 12345678999999999999998 888888887763 4689999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHH
Q 002164 874 SHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+|.+. .+....+.+.+.+||++
T Consensus 185 ~H~~~-~~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 185 GHPVY-IEKPEEFVRITVDFLRN 206 (207)
T ss_dssp CSCHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCcc-ccCHHHHHHHHHHHHhh
Confidence 99863 34456677778888764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-16 Score=168.76 Aligned_cols=268 Identities=13% Similarity=0.163 Sum_probs=177.0
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccC
Q 002164 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (958)
Q Consensus 110 ~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~ 185 (958)
.+..++|||+ |+.|+..+.+ +.|.+|++.. +.......+.++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D---------------------------------~~v~vW~~~~-~~~~~~~~l~gh 79 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLD---------------------------------DLVKVWKWRD-ERLDLQWSLEGH 79 (321)
T ss_dssp CEEEEEEC-------CEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECCC
T ss_pred cEEEEEEecCCCCCCCEEEEEcCC---------------------------------CCEEEEECCC-CCeeeeeeeccC
Confidence 5678899885 5678777765 4788998854 111112234432
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCC
Q 002164 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
...+....|+|+++.++... ....|.+||+.+++........... +..++|+|||+.|+...
T Consensus 80 --~~~v~~~~~~~~~~~l~s~s---------~D~~i~lWd~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~g~--- 141 (321)
T 3ow8_A 80 --QLGVVSVDISHTLPIAASSS---------LDAHIRLWDLENGKQIKSIDAGPVD----AWTLAFSPDSQYLATGT--- 141 (321)
T ss_dssp --SSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCTTC----CCCEEECTTSSEEEEEC---
T ss_pred --CCCEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCEEEEEeCCCcc----EEEEEECCCCCEEEEEc---
Confidence 24688899999999888754 2568999999988765443322222 56899999999999761
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPD 342 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpD 342 (958)
....+.++++ +++. ..+... ..+..++||||
T Consensus 142 ----------------------------------------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 142 ----------------------------------------------HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp ----------------------------------------------TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence 2245777777 5533 333333 56788999999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
|++|+..+.+ +.|.+||+.+++. ..+..+ ...+..+.|+|||+.|+..
T Consensus 176 g~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~spd~~~l~s~----- 224 (321)
T 3ow8_A 176 GKYLASGAID-------------GIINIFDIATGKLLHTLEGH-------------AMPIRSLTFSPDSQLLVTA----- 224 (321)
T ss_dssp SSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------SSCCCEEEECTTSCEEEEE-----
T ss_pred CCEEEEEcCC-------------CeEEEEECCCCcEEEEEccc-------------CCceeEEEEcCCCCEEEEE-----
Confidence 9999988743 4899999986654 333221 1345789999999987762
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
+..+.|.+|++ ..+.....+..+...+..++|+|||+.|+..+.++. .+|| ++.++ +....+..
T Consensus 225 --------s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~--v~iw--d~~~~--~~~~~~~~ 288 (321)
T 3ow8_A 225 --------SDDGYIKIYDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS--VKVW--DVGTR--TCVHTFFD 288 (321)
T ss_dssp --------CTTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEE--ETTTT--EEEEEECC
T ss_pred --------cCCCeEEEEEC--CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc--EEEE--eCCCC--EEEEEEcC
Confidence 45567899996 233334445556667788999999999887765443 4454 55553 33333434
Q ss_pred CCccccCCCCCCceEeccCCceEEEEe
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+.. ++|+|||+.|+...
T Consensus 289 h~~~v~~------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 289 HQDQVWG------VKYNGNGSKIVSVG 309 (321)
T ss_dssp CSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCcEEE------EEECCCCCEEEEEe
Confidence 4444444 78999999988765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-15 Score=180.59 Aligned_cols=329 Identities=11% Similarity=0.069 Sum_probs=201.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
....++|||||++||+.... .+.+|++.. + ...+.++++. .
T Consensus 20 ~~~~~~~spdg~~l~~~~~~----------------------------------~v~l~~~~~-~--~~~~~~~~h~--~ 60 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--H 60 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--S
T ss_pred ceeEEeeCCCCCEEEeCCCC----------------------------------EEEEecCCC-c--ccCeEecCCC--C
Confidence 35578899999999998753 788999853 2 3445565533 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee---ccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.+...+|||||++||... ....|.+||+.+++... +..... .+..++|+|||+.|+.......
T Consensus 61 ~v~~~~~spdg~~lasg~---------~d~~v~lWd~~~~~~~~~~~~~~~~~-----~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSS
T ss_pred ceEEEEECCCCcEEEEEe---------CCCCEEEeECCCCcceeeEeecccCC-----ceEEEEECCCCCEEEEEECCCC
Confidence 689999999999999865 25678888987554321 222222 2779999999999987621100
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcE
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....+++++.......+... ..+..++|+|||+.
T Consensus 127 ---------------------------------------------~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 127 ---------------------------------------------RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp ---------------------------------------------CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred ---------------------------------------------ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe
Confidence 11345555542223344444 67889999999985
Q ss_pred -EEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 346 -ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 346 -l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
|+..+. ++.+.+||....+.. .+..+ ...+..++|+|||+.|+..
T Consensus 162 ~l~s~s~-------------D~~v~lwd~~~~~~~~~l~~H-------------~~~V~~v~fspdg~~las~------- 208 (611)
T 1nr0_A 162 RIISGSD-------------DNTVAIFEGPPFKFKSTFGEH-------------TKFVHSVRYNPDGSLFAST------- 208 (611)
T ss_dssp EEEEEET-------------TSCEEEEETTTBEEEEEECCC-------------SSCEEEEEECTTSSEEEEE-------
T ss_pred EEEEEeC-------------CCeEEEEECCCCeEeeeeccc-------------cCceEEEEECCCCCEEEEE-------
Confidence 555542 348999998765432 22221 2456789999999977652
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEE-------eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 496 (958)
+..+.|.+|+. .++.....+. .+...+..++|+|||+.|+..+.++. +.++++.++ +..
T Consensus 209 ------s~D~~i~lwd~--~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~----v~lWd~~~~--~~~ 274 (611)
T 1nr0_A 209 ------GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT----IKIWNVATL--KVE 274 (611)
T ss_dssp ------ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE----EEEEETTTT--EEE
T ss_pred ------ECCCcEEEEEC--CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe----EEEEeCCCC--cee
Confidence 45667899985 2333333332 34556778999999999987765443 444455543 222
Q ss_pred EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccc
Q 002164 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (958)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~ 576 (958)
........ ... .......+++.++.... + ..+.+||+.+++..+.......
T Consensus 275 ~~~~~~~~-~~~----~~~~~~~~~~~l~s~s~-------------d--------~~i~~~~~~~~~~~~~~~gh~~--- 325 (611)
T 1nr0_A 275 KTIPVGTR-IED----QQLGIIWTKQALVSISA-------------N--------GFINFVNPELGSIDQVRYGHNK--- 325 (611)
T ss_dssp EEEECCSS-GGG----CEEEEEECSSCEEEEET-------------T--------CCEEEEETTTTEEEEEECCCSS---
T ss_pred eeecCCCC-ccc----eeEEEEEcCCEEEEEeC-------------C--------CcEEEEeCCCCCcceEEcCCCC---
Confidence 22111100 000 00122225666665542 1 1488899887765444332221
Q ss_pred ceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEe
Q 002164 577 ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (958)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~L 624 (958)
.+. ..+|+|||+.++..... ..+.++++.+++...+
T Consensus 326 -~v~-------~l~~spdg~~l~s~s~D----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 326 -AIT-------ALSSSADGKTLFSADAE----GHINSWDISTGISNRV 361 (611)
T ss_dssp -CEE-------EEEECTTSSEEEEEETT----SCEEEEETTTCCEEEC
T ss_pred -CEE-------EEEEeCCCCEEEEEeCC----CcEEEEECCCCceeee
Confidence 122 25789999877654432 4689999988875543
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=165.64 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=133.1
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-----CcEEEEcCCC----------------CCCCCC
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-----GFAILGGPTT----------------PIIGEG 727 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-----G~~vl~~~~~----------------~~~G~G 727 (958)
+.|+||++||...... .| ..+...|+.+ ||.|+.++.. +..|.+
T Consensus 22 ~~p~vv~lHG~g~~~~-----------~~----~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 86 (239)
T 3u0v_A 22 HSASLIFLHGSGDSGQ-----------GL----RMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKIT 86 (239)
T ss_dssp CCEEEEEECCTTCCHH-----------HH----HHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSS
T ss_pred CCcEEEEEecCCCchh-----------hH----HHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCC
Confidence 4899999999532110 01 1234455554 6888885541 222222
Q ss_pred Cccc-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc
Q 002164 728 DEEA-NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (958)
Q Consensus 728 ~~~~-~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (958)
.... .........+++...++.+.+. .+|.++++|+|||+||++++.++.++|++++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------- 158 (239)
T 3u0v_A 87 NDCPEHLESIDVMCQVLTDLIDEEVKS-GIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------- 158 (239)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHh-CCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------
Confidence 2211 1123445566666666666553 478899999999999999999999999999999999987542110
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCC-EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002164 807 DRTLWEATSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (958)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~ 885 (958)
.. ..+. ....++| +|++||++|..+| +++++++++.|+..+.++++.++++++|.+. .+
T Consensus 159 ---~~---~~~~-------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~ 218 (239)
T 3u0v_A 159 ---VY---QALQ-------KSNGVLPELFQCHGTADELVL--HSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KT 218 (239)
T ss_dssp ---HH---HHHH-------HCCSCCCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HH
T ss_pred ---HH---HHHH-------hhccCCCCEEEEeeCCCCccC--HHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HH
Confidence 00 0010 1233566 9999999999999 9999999999999999999999999999985 45
Q ss_pred HHHHHHHHHHHhhcc
Q 002164 886 VLWETDRWLQKYCVS 900 (958)
Q Consensus 886 ~~~~i~~fl~~~l~~ 900 (958)
..+.+.+||.+++..
T Consensus 219 ~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 219 ELDILKLWILTKLPG 233 (239)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhCCC
Confidence 578899999999854
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-18 Score=179.10 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=136.4
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH----HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHH
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW----LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~ 743 (958)
++.|+||++|||++..+.. + .......+..| +++||.|+++++++ .+.. .....++|+
T Consensus 39 ~~~p~vv~lHGgg~~~g~~------~----~~~~~~~~~~L~~~a~~~g~~vi~~d~r~---~~~~-----~~~~~~~d~ 100 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPEN------T----PNDFNQLANTIKSMDTESTVCQYSIEYRL---SPEI-----TNPRNLYDA 100 (273)
T ss_dssp TCCEEEEEECCSTTTCTTC------C----GGGGHHHHHHHHHHCTTCCEEEEEECCCC---TTTS-----CTTHHHHHH
T ss_pred CCCeEEEEECCCcccCCcC------C----hHHHHHHHHHHhhhhccCCcEEEEeeccc---CCCC-----CCCcHHHHH
Confidence 3589999999976432110 0 01112345556 57999999977643 2221 123567899
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----------------CCceeEEEEeccCCCCCCCCCCccc-
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------------PHLFCCGIARSGAYNRTLTPFGFQN- 805 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----------------p~~~~a~v~~~~~~~~~~~~~~~~~- 805 (958)
.++++++.++ ++.++++|+|||+||.+++.++.+. |++++++|+.+|+++..........
T Consensus 101 ~~~~~~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 178 (273)
T 1vkh_A 101 VSNITRLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY 178 (273)
T ss_dssp HHHHHHHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGG
T ss_pred HHHHHHHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccH
Confidence 9999999887 5678999999999999999999885 6889999999987652110000000
Q ss_pred ---------ccchhhh-cHHHHHhcCccc--ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 806 ---------EDRTLWE-ATSTYVEMSPFM--SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 806 ---------~~~~~~~-~~~~~~~~sp~~--~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
.....|. ... ..++.. ...++++|+|++||++|..+| +.+++++++.++..+.++++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~ 253 (273)
T 1vkh_A 179 DCFTRLAFPDGIQMYEEEPS---RVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLG 253 (273)
T ss_dssp HHHHHHHCTTCGGGCCCCHH---HHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHHHhcccccchhhccc---ccChhhhhcccccCCCEEEEecCCcCCCC--hHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 0000011 110 111100 112267899999999999999 99999999999999999999999999
Q ss_pred CccCCCcccHHHHHHHHHHHH
Q 002164 874 SHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl 894 (958)
+|.+.. +. .++.+.+.+||
T Consensus 254 gH~~~~-~~-~~~~~~i~~fl 272 (273)
T 1vkh_A 254 LHNDVY-KN-GKVAKYIFDNI 272 (273)
T ss_dssp SGGGGG-GC-HHHHHHHHHTC
T ss_pred cccccc-cC-hHHHHHHHHHc
Confidence 999743 33 66777777775
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=178.02 Aligned_cols=216 Identities=8% Similarity=0.026 Sum_probs=146.5
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEE 730 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~ 730 (958)
+.+++|.|.+ ++.|+||++|||++..+. .. ........|+ +.||.|+++++++. +.
T Consensus 84 ~~~~~~~p~~------~~~p~vv~lHGgg~~~~~--------~~----~~~~~~~~la~~~g~~vi~~D~r~~---~~-- 140 (326)
T 3d7r_A 84 MQVFRFNFRH------QIDKKILYIHGGFNALQP--------SP----FHWRLLDKITLSTLYEVVLPIYPKT---PE-- 140 (326)
T ss_dssp EEEEEEESTT------CCSSEEEEECCSTTTSCC--------CH----HHHHHHHHHHHHHCSEEEEECCCCT---TT--
T ss_pred EEEEEEeeCC------CCCeEEEEECCCcccCCC--------CH----HHHHHHHHHHHHhCCEEEEEeCCCC---CC--
Confidence 5567788864 136999999997542211 00 1112344566 46999999776532 21
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEeccCCCCCCCCCCcc-c
Q 002164 731 ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQ-N 805 (958)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~-~ 805 (958)
..+...++|+.++++++.++ +++++++|+|||+||.+|+.++.+.|++ ++++|+.+|.++......... .
T Consensus 141 ---~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~ 215 (326)
T 3d7r_A 141 ---FHIDDTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA 215 (326)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH
T ss_pred ---CCchHHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh
Confidence 22456789999999999887 6788999999999999999999887665 999999999876543211111 0
Q ss_pred c-cchhh-------hcHHHHH--------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 806 E-DRTLW-------EATSTYV--------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 806 ~-~~~~~-------~~~~~~~--------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
. ....+ .....|. ..+|+...-+..+|+||+||++|.. ..++.++.++++..+.++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~----~~~~~~~~~~l~~~~~~~~~~~ 291 (326)
T 3d7r_A 216 LIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMT----HPDMKLFEQMMLQHHQYIEFYD 291 (326)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcccCcccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccc----hHHHHHHHHHHHHCCCcEEEEE
Confidence 0 00000 0001111 1123321111225999999999963 5678889999999999999999
Q ss_pred eCCCCccCCC--cccHHHHHHHHHHHHHHhhc
Q 002164 870 LPFESHGYAA--RESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 870 ~p~~~H~~~~--~~~~~~~~~~i~~fl~~~l~ 899 (958)
+|+++|.+.. .+....+.+.+.+||.+++.
T Consensus 292 ~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 292 YPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp ETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred eCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999998753 35667888999999988763
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=167.62 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=142.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (958)
.|+||++||..... .. ....+..|+++||.|++ .+.+|+|.+... ........+|+.+++
T Consensus 40 ~~~vv~~HG~~~~~-----------~~----~~~~~~~l~~~G~~v~~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 101 (270)
T 3rm3_A 40 PVGVLLVHGFTGTP-----------HS----MRPLAEAYAKAGYTVCL---PRLKGHGTHYEDMERTTFHDWVASVEEGY 101 (270)
T ss_dssp SEEEEEECCTTCCG-----------GG----THHHHHHHHHTTCEEEE---CCCTTCSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCh-----------hH----HHHHHHHHHHCCCEEEE---eCCCCCCCCccccccCCHHHHHHHHHHHH
Confidence 59999999964211 11 22456778899999999 566688877542 233567789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----------CC------Ccccc----
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----------PF------GFQNE---- 806 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----------~~------~~~~~---- 806 (958)
+++.++ .++++++|||+||.+++.++.++|+ ++++|+++|..+.... .+ .+...
T Consensus 102 ~~l~~~----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3rm3_A 102 GWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE 176 (270)
T ss_dssp HHHHTT----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCC
T ss_pred HHHHhh----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHh
Confidence 999876 4699999999999999999999998 9999999986542100 00 00000
Q ss_pred ---cchhhhcHHHHHh--cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 807 ---DRTLWEATSTYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 807 ---~~~~~~~~~~~~~--~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
..........+.. .+....+.++++|+|+++|++|..+| +..+.++++.++. .+++++++|+++|.+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~ 252 (270)
T 3rm3_A 177 LAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVP--PGNADIIFQGISS--TEKEIVRLRNSYHVATLDY 252 (270)
T ss_dssp CCCSEEEHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHSCC--SSEEEEEESSCCSCGGGST
T ss_pred hcccccChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccC--HHHHHHHHHhcCC--CcceEEEeCCCCcccccCc
Confidence 0000000000000 01223566789999999999999998 8889888888754 3679999999999986554
Q ss_pred cHHHHHHHHHHHHHHhh
Q 002164 882 SIMHVLWETDRWLQKYC 898 (958)
Q Consensus 882 ~~~~~~~~i~~fl~~~l 898 (958)
....+.+.+.+||+++.
T Consensus 253 ~~~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 253 DQPMIIERSLEFFAKHA 269 (270)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 55788999999998864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=176.01 Aligned_cols=284 Identities=10% Similarity=0.040 Sum_probs=164.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ . . ...+..+++|+... +...............
T Consensus 44 ~V~~v~fSpDG~~las~s~d-----------------------~-~---~~wd~~v~~~~~~~-~~~~~~~~~~~~~~~~ 95 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSL-----------------------S-S---RTWGGSIWVFKDPE-GAPNESLCTAGVQTEA 95 (357)
T ss_dssp EEEEEEECSSSCEEEEEECS-----------------------S-S---SSCCEEEEEESSCC----CGGGCSEEEECSS
T ss_pred CEEEEEECCCCCEEEEEcCC-----------------------C-C---ccccCeEEEEECCC-CCcceeEecccCCCCC
Confidence 46789999999999988764 0 0 01124688888744 2111111111111223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|+||++.|+- . . ...|.+||+.+++...............+..++|+|||+.|+...
T Consensus 96 ~V~~~~~s~d~~~l~~-s-------~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------- 158 (357)
T 4g56_B 96 GVTDVAWVSEKGILVA-S-------D--SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------- 158 (357)
T ss_dssp CEEEEEEETTTEEEEE-E-------T--TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------
T ss_pred CEEEEEEcCCCCEEEE-E-------C--CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------
Confidence 5888999999975543 3 1 346888888877654322111101112277899999999998761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++.. .+... ..+..++|+|+++.+
T Consensus 159 ------------------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 159 ------------------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 2244777788 77544 34333 678889999999865
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... ++.|.+||+.+++......... ....+..+.|+||+..++..
T Consensus 197 ~~s~~~------------dg~v~~wd~~~~~~~~~~~~~~----------~~~~v~~v~~sp~~~~~la~---------- 244 (357)
T 4g56_B 197 FLSCGE------------DGRILLWDTRKPKPATRIDFCA----------SDTIPTSVTWHPEKDDTFAC---------- 244 (357)
T ss_dssp EEEEET------------TSCEEECCTTSSSCBCBCCCTT----------CCSCEEEEEECTTSTTEEEE----------
T ss_pred eeeecc------------CCceEEEECCCCceeeeeeecc----------ccccccchhhhhcccceEEE----------
Confidence 554422 3489999998554322111110 11234678999998766553
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccc
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 506 (958)
.+..+.|++|++ .++.....+......+..++|||||+.++.+...++ .|+++|+.++ +... .......+
T Consensus 245 --g~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~---~i~iwd~~~~--~~~~-~~~H~~~V 314 (357)
T 4g56_B 245 --GDETGNVSLVNI--KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC---TVAVLDADFS--EVFR-DLSHRDFV 314 (357)
T ss_dssp --EESSSCEEEEES--SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTSC--EEEE-ECCCSSCE
T ss_pred --eecccceeEEEC--CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC---EEEEEECCCC--cEeE-ECCCCCCE
Confidence 134557899996 344455556566667888999999866444443332 2556677664 2222 22333334
Q ss_pred cCCCCCCceEecc-CCceEEEEe
Q 002164 507 YSDPGSPMMRRTS-TGTYVIAKI 528 (958)
Q Consensus 507 ~~~~~~~~~~~sp-dG~~l~~~~ 528 (958)
.. ++||| ||+.|+...
T Consensus 315 ~~------vafsP~d~~~l~s~s 331 (357)
T 4g56_B 315 TG------VAWSPLDHSKFTTVG 331 (357)
T ss_dssp EE------EEECSSSTTEEEEEE
T ss_pred EE------EEEeCCCCCEEEEEc
Confidence 44 78998 788887665
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=161.74 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=138.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
++..++..++.|.. .+.|+||++||+... ...| ......|++ ||.|+.++.....+.|
T Consensus 14 ~~~~l~~~~~~~~~------~~~p~vv~lHG~g~~-----------~~~~----~~~~~~l~~-~~~vv~~d~~~~~~~g 71 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK------ESRECLFLLHGSGVD-----------ETTL----VPLARRIAP-TATLVAARGRIPQEDG 71 (223)
T ss_dssp CSSSSCEEEESTTS------SCCCEEEEECCTTBC-----------TTTT----HHHHHHHCT-TSEEEEECCSEEETTE
T ss_pred cCCCceEEEeCCCC------CCCCEEEEEecCCCC-----------HHHH----HHHHHhcCC-CceEEEeCCCCCcCCc
Confidence 34556555554432 124899999996421 1112 123445554 9999996643211101
Q ss_pred Ccc--------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC
Q 002164 728 DEE--------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 728 ~~~--------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
.++ ..........+|+.+.++++.++..+|+++++|+|||+||.+++.++.++|++++++|+++|......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~- 150 (223)
T 3b5e_A 72 FRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH- 150 (223)
T ss_dssp EESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS-
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc-
Confidence 111 11223456678888888888877567889999999999999999999999999999999998654210
Q ss_pred CCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002164 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879 (958)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~ 879 (958)
......+++|+|++||++|..+| ++.++ +++.++..|.++++++++ ++|.+.
T Consensus 151 -----------------------~~~~~~~~~P~li~~G~~D~~v~--~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~- 202 (223)
T 3b5e_A 151 -----------------------VPATDLAGIRTLIIAGAADETYG--PFVPA-LVTLLSRHGAEVDARIIP-SGHDIG- 202 (223)
T ss_dssp -----------------------CCCCCCTTCEEEEEEETTCTTTG--GGHHH-HHHHHHHTTCEEEEEEES-CCSCCC-
T ss_pred -----------------------cccccccCCCEEEEeCCCCCcCC--HHHHH-HHHHHHHCCCceEEEEec-CCCCcC-
Confidence 01223457899999999999998 89999 999999999999999999 899984
Q ss_pred cccHHHHHHHHHHHHHHhh
Q 002164 880 RESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l 898 (958)
.+..+.+.+||.+.+
T Consensus 203 ----~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ----DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ----HHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHHhhh
Confidence 223567888987754
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=168.99 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=145.4
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.+++.. +|..+....+.+..- ++..|+||++||.+... .. ....+..|+++||.|++
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~p~vv~~hG~~~~~-----------~~----~~~~~~~l~~~g~~v~~ 78 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPK----KANGRTILLMHGKNFCA-----------GT----WERTIDVLADAGYRVIA 78 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCS----SCCSCEEEEECCTTCCG-----------GG----GHHHHHHHHHTTCEEEE
T ss_pred cceeEEEec-CCCCeeEEEeecCCC----CCCCCeEEEEcCCCCcc-----------hH----HHHHHHHHHHCCCeEEE
Confidence 456777765 666666665554321 22379999999964221 11 12456678899999999
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 718 GPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
.+.+|+|.+.... .......+|+.++++. ++.++++++|||+||.+++.++.++|++++++|++++..
T Consensus 79 ---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 149 (315)
T 4f0j_A 79 ---VDQVGFCKSSKPAHYQYSFQQLAANTHALLER------LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149 (315)
T ss_dssp ---ECCTTSTTSCCCSSCCCCHHHHHHHHHHHHHH------TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred ---eecCCCCCCCCCCccccCHHHHHHHHHHHHHH------hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence 5556777765432 2334555555555443 244689999999999999999999999999999999853
Q ss_pred CCCCCCCCcc-----------------------------cccchh---hh---------------------cHHHHHhcC
Q 002164 795 NRTLTPFGFQ-----------------------------NEDRTL---WE---------------------ATSTYVEMS 821 (958)
Q Consensus 795 ~~~~~~~~~~-----------------------------~~~~~~---~~---------------------~~~~~~~~s 821 (958)
.......... ...... |. ........+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (315)
T 4f0j_A 150 LEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQP 229 (315)
T ss_dssp SSCHHHHTCCCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcccccchhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccch
Confidence 2110000000 000000 00 001111223
Q ss_pred cccccCCCCCCEEEEeeCCCCCCCCChHHH------------HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002164 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQS------------DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (958)
Q Consensus 822 p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~------------~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~ 889 (958)
....+.++++|+|+++|++|..+| ..+. .+..+.+......+++++++++||... .++...+.+.
T Consensus 230 ~~~~l~~~~~P~lii~G~~D~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~ 306 (315)
T 4f0j_A 230 VVYELDRLQMPTLLLIGEKDNTAI--GKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQA 306 (315)
T ss_dssp CGGGGGGCCSCEEEEEETTCCCCT--TGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHHH
T ss_pred hhhhcccCCCCeEEEEecCCCcCc--cccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHHH
Confidence 445677889999999999999987 5443 445555555555789999999999864 4566777788
Q ss_pred HHHHHHH
Q 002164 890 TDRWLQK 896 (958)
Q Consensus 890 i~~fl~~ 896 (958)
|.+||++
T Consensus 307 i~~fl~~ 313 (315)
T 4f0j_A 307 LLEGLQT 313 (315)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 8888764
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=166.37 Aligned_cols=180 Identities=16% Similarity=0.083 Sum_probs=131.2
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc---------chhhHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------NDRFVEQL 739 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---------~~~~~~~~ 739 (958)
+.|+||++||+..... . ....+..|++ +|.|++++. +..|+|.+.. ........
T Consensus 61 ~~p~vv~~HG~~~~~~-----------~----~~~~~~~l~~-~~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 123 (251)
T 2r8b_A 61 GAPLFVLLHGTGGDEN-----------Q----FFDFGARLLP-QATILSPVG-DVSEHGAARFFRRTGEGVYDMVDLERA 123 (251)
T ss_dssp TSCEEEEECCTTCCHH-----------H----HHHHHHHHST-TSEEEEECC-SEEETTEEESSCBCGGGCBCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHh-----------H----HHHHHHhcCC-CceEEEecC-CcCCCCCcccccCCCCCcCCHHHHHHH
Confidence 3799999999642110 0 1123444544 599999632 4455554321 11223455
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
+.|+.++++++.++. +.++++|+|||+||++++.++.++|++++++|+++|..+...
T Consensus 124 ~~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~--------------------- 180 (251)
T 2r8b_A 124 TGKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 180 (251)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc---------------------
Confidence 788888888887764 678999999999999999999999999999999998754221
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
......+++|+|++||++|..+| ++.+++++++++..+.++++ .+++++|.+. .+..+.+.+||.+++.
T Consensus 181 ---~~~~~~~~~P~li~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 181 ---KISPAKPTRRVLITAGERDPICP--VQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp ---CCCCCCTTCEEEEEEETTCTTSC--HHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ---cccccccCCcEEEeccCCCccCC--HHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 11223457899999999999998 89999999999987778887 5666799983 3346788999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=168.25 Aligned_cols=287 Identities=8% Similarity=0.046 Sum_probs=189.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|++.. + .....+.. +..
T Consensus 34 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~--h~~ 75 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKD---------------------------------SSASVWYSLN-G--ERLGTLDG--HTG 75 (369)
T ss_dssp CEEEEEECTTSCEEEEEESS---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred eEEEEEEcCCCCEEEEEeCC---------------------------------CEEEEEeCCC-c--hhhhhhhh--cCC
Confidence 46788999999999988765 4789999854 2 23444443 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+.|+|||++|+.... ...|.+|++.+++.......... +..++|+|||+.|++.......
T Consensus 76 ~v~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~~-- 139 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSA---------DYSIKLWDVSNGQCVATWKSPVP-----VKRVEFSPCGNYFLAILDNVMK-- 139 (369)
T ss_dssp CEEEEEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSSEEEEEECCBTT--
T ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEeecCCC-----eEEEEEccCCCEEEEecCCccC--
Confidence 7899999999999988652 56899999998887665553332 7789999999999977221000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC------------eeeecCCC---cc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG------------TVKEIGPP---AV 333 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g------------~~~~l~~~---~~ 333 (958)
....|.++++ .+ ....+... ..
T Consensus 140 ------------------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 140 ------------------------------------------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp ------------------------------------------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred ------------------------------------------CCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 1133445544 22 11112111 26
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceE-EEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
+..++|+|||+.|+.... ++.|.+||+.. ... ..+..+. ..+..+.|+|||+
T Consensus 178 ~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK-------------DGKISKYDVSNNYEYVDSIDLHE-------------KSISDMQFSPDLT 231 (369)
T ss_dssp EEEEEECGGGCEEEEEET-------------TSEEEEEETTTTTEEEEEEECCS-------------SCEEEEEECTTSS
T ss_pred eeEEEEcCCCCEEEEEcC-------------CCEEEEEECCCCcEeEEEEecCC-------------CceeEEEECCCCC
Confidence 788899999999988763 34899999986 333 3333221 3457899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc----------ce
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR----------RT 481 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~----------~~ 481 (958)
.|+.. +..+.|++|++ ..++..........+..+.|+|+++.|++....+.. ..
T Consensus 232 ~l~~~-------------~~d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 232 YFITS-------------SRDTNSFLVDV---STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp EEEEE-------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred EEEEe-------------cCCceEEEEEC---CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 88773 44567999996 444444444456667789999999999988754421 11
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
.+.+++...+ +...........+.. ++|+|||++|+....+ ..|.+|++++
T Consensus 296 ~i~~~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d---------------------g~v~iw~~~~ 346 (369)
T 3zwl_B 296 EARFYHKIFE--EEIGRVQGHFGPLNT------VAISPQGTSYASGGED---------------------GFIRLHHFEK 346 (369)
T ss_dssp EEEEEETTTC--CEEEEEECCSSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEEECH
T ss_pred eeEEEecCCC--cchhheecccCcEEE------EEECCCCCEEEEEcCC---------------------CeEEEEECcc
Confidence 4666666653 333333333333333 7899999988877621 2588898875
Q ss_pred Cc
Q 002164 562 GS 563 (958)
Q Consensus 562 g~ 563 (958)
+.
T Consensus 347 ~~ 348 (369)
T 3zwl_B 347 SY 348 (369)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=171.33 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=153.8
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+.+.+++.+. .|.++.++ +.|. + .++|+||++||++... +...|... ....+.+++.||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~-~-----~~~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG-G-----ANSPALYLLDGLRAQD---------DFSGWDIN-TPAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC-S-----TTBCEEEEECCTTCCS---------SSCHHHHH-CCHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECCC-C-----CCCCEEEEeCCCCCCC---------CcchhhcC-CCHHHHHhcCCeEEE
Confidence 4567777765 46677766 4443 2 2489999999963100 00111100 012345677899999
Q ss_pred EcCCCCCCCCCCccc---------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
.++..+..++..... ...+.....+|+ +.++.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l---~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 147 (304)
T 1sfr_A 71 MPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSEL---PGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147 (304)
T ss_dssp EECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHH---HHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEE
T ss_pred EECCCCCccccccCCccccccccccccHHHHHHHHH---HHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEE
Confidence 977754333321100 112222222344 44444433477789999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCc------c--c--ccchhhh--cHHHHHhcCcccccCCC---CCCEEEEeeCCCC----------
Q 002164 788 IARSGAYNRTLTPFGF------Q--N--EDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (958)
Q Consensus 788 v~~~~~~~~~~~~~~~------~--~--~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~---------- 842 (958)
|+++|.++.....+.. . . .....|. ....+...+|...+.++ ++|++++||+.|.
T Consensus 148 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~ 227 (304)
T 1sfr_A 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPA 227 (304)
T ss_dssp EEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHH
T ss_pred EEECCccCccccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCcccccccccc
Confidence 9999987643211000 0 0 0000111 11345566777665555 5899999999998
Q ss_pred ----CCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
.++ ...+++++++|+..| +++++.+|++++|.+. .....+..++.||.++|..
T Consensus 228 ~~~e~~~--~~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~~ 285 (304)
T 1sfr_A 228 KFLEGFV--RTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGA 285 (304)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTC
T ss_pred chhHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcCC
Confidence 556 789999999999999 9999999987799752 2345567889999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-15 Score=169.92 Aligned_cols=282 Identities=11% Similarity=0.144 Sum_probs=176.5
Q ss_pred CCCCCceecCCCC-EEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEc----cCCCCC----Cce
Q 002164 109 PPLPALSFSPQRD-KILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL----FPDGKL----GQE 179 (958)
Q Consensus 109 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~----~~dg~~----~~~ 179 (958)
..+..++|||||+ +||....+ +.|.+|++ .. +.. ...
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~~~-~~~~~~~~~~ 91 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN---------------------------------SVARLARIVETDQE-GKKYWKLTII 91 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB---------------------------------TEEEEEEEEEC-------CEEEEEE
T ss_pred CceEEEEECCCCCcEEEEecCC---------------------------------ceEEEEEEecccCC-cccccccccc
Confidence 4688999999999 89887764 36888888 44 210 012
Q ss_pred eeecc-CC-------CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE
Q 002164 180 IEIQG-FP-------DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 180 ~~lt~-~~-------~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (958)
..+.. +. ....+..++|||||++|+.... ...|.+|+..+.....+...... +..++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~-----v~~~~~ 157 (425)
T 1r5m_A 92 AELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE---------NGELRLWNKTGALLNVLNFHRAP-----IVSVKW 157 (425)
T ss_dssp EEEECCCCCC------CBCEEEEEECTTSSEEEEEET---------TSCEEEEETTSCEEEEECCCCSC-----EEEEEE
T ss_pred ccccccccccccccCCCCceEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCeeeeccCCCcc-----EEEEEE
Confidence 22221 00 1236889999999999998652 45788888655555555433332 778999
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecC
Q 002164 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG 329 (958)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~ 329 (958)
+|||+.|++.. ....|.++++ +++.. .+.
T Consensus 158 ~~~~~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 158 NKDGTHIISMD-------------------------------------------------VENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp CTTSSEEEEEE-------------------------------------------------TTCCEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEe-------------------------------------------------cCCeEEEEECCCCcEEEEee
Confidence 99999988762 1234666676 55432 222
Q ss_pred CC-cc---------------ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcc
Q 002164 330 PP-AV---------------YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPI 392 (958)
Q Consensus 330 ~~-~~---------------~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~ 392 (958)
.. .. +..+.|+|++. ++.... .+.+.+||+..+... .+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~g~i~~~d~~~~~~~~~~~~~-------- 246 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP-------------KGAIFVYQITEKTPTGKLIGH-------- 246 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECG-------------GGCEEEEETTCSSCSEEECCC--------
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC-------------CCeEEEEEcCCCceeeeeccC--------
Confidence 22 22 78889999876 333332 348999999865332 22211
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEE
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (958)
...+..+.|+|||+.++.. +..+.|++|++ ..+.....+......+..+.|+|+| .|+.
T Consensus 247 -----~~~i~~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 247 -----HGPISVLEFNDTNKLLLSA-------------SDDGTLRIWHG--GNGNSQNCFYGHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp -----SSCEEEEEEETTTTEEEEE-------------ETTSCEEEECS--SSBSCSEEECCCSSCEEEEEEETTT-EEEE
T ss_pred -----CCceEEEEECCCCCEEEEE-------------cCCCEEEEEEC--CCCccceEecCCCccEEEEEECCCC-EEEE
Confidence 1345789999999977663 34567899986 2344455555566678889999999 5554
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCC
Q 002164 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (958)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (958)
... + ..|+++++..+ +...........+.. +.|+|||++|+....+ .
T Consensus 306 ~~~-d---~~i~i~d~~~~--~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~d---------------------g 352 (425)
T 1r5m_A 306 CSM-D---GSVRLWSLKQN--TLLALSIVDGVPIFA------GRISQDGQKYAVAFMD---------------------G 352 (425)
T ss_dssp EET-T---SEEEEEETTTT--EEEEEEECTTCCEEE------EEECTTSSEEEEEETT---------------------S
T ss_pred EeC-C---CcEEEEECCCC--cEeEecccCCccEEE------EEEcCCCCEEEEEECC---------------------C
Confidence 433 3 24666777664 333333332333333 7899999988877521 2
Q ss_pred eEEEEECCCCc
Q 002164 553 FLDLFDINTGS 563 (958)
Q Consensus 553 ~L~~~dl~~g~ 563 (958)
.|.+||+.+++
T Consensus 353 ~i~i~~~~~~~ 363 (425)
T 1r5m_A 353 QVNVYDLKKLN 363 (425)
T ss_dssp CEEEEECHHHH
T ss_pred eEEEEECCCCc
Confidence 48889987665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-15 Score=181.89 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=177.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..++|||||++|||+.+.. +++...||++|+++|+..+.+.... . ...++|+ ||+.|+|+.......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~----G~~~~~i~v~dl~tg~~~~~~~~~~-k----~~~~~Ws-Dg~~l~y~~~~~~~~- 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA----GSDWREIHLMDVESKQPLETPLKDV-K----FSGISWL-GNEGFFYSSYDKPDG- 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS----SCCEEEEEEEETTTCSEEEEEEEEE-E----SCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEEECCCCCEEEEEEecC----CCceEEEEEEECCCCCCCccccCCc-e----eccEEEe-CCCEEEEEEecCccc-
Confidence 566789999999999987633 4556899999999998766532111 0 3478999 999999985432100
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC-c----cccccccCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-A----VYTSLDPSP 341 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~-~----~~~~~~~Sp 341 (958)
+ .........+||+.++ ++. .+.+... . ...++.|||
T Consensus 199 --------~---------------------------~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp 243 (693)
T 3iuj_A 199 --------S---------------------------ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE 243 (693)
T ss_dssp -----------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT
T ss_pred --------c---------------------------cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC
Confidence 0 0000002356999998 553 3455443 3 246788999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
||++|++++.... ..++++++|++++ ..+.|+.... .... .|++||+.++|.++.
T Consensus 244 Dg~~l~~~~~~~~---------~~~~i~~~d~~~~~~~~~~l~~~~~-------------~~~~-~~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 244 DDRFLLISAANST---------SGNRLYVKDLSQENAPLLTVQGDLD-------------ADVS-LVDNKGSTLYLLTNR 300 (693)
T ss_dssp TSCEEEEEEESSS---------SCCEEEEEETTSTTCCCEEEECSSS-------------SCEE-EEEEETTEEEEEECT
T ss_pred CCCEEEEEEccCC---------CCcEEEEEECCCCCCceEEEeCCCC-------------ceEE-EEeccCCEEEEEECC
Confidence 9999999875432 2348999999855 5566654321 1122 289999999987543
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 496 (958)
. .....|+++++ +++.. +.++.....+. .|+++|+.|++....++. .+|++++++++ ...
T Consensus 301 ~---------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~-~~l~~~d~~g~--~~~ 363 (693)
T 3iuj_A 301 D---------APNRRLVTVDA---ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT-ARVEQFDYEGK--RVR 363 (693)
T ss_dssp T---------CTTCEEEEEET---TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE-EEEEEECTTSC--EEE
T ss_pred C---------CCCCEEEEEeC---CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe-eEEEEEECCCC--eeE
Confidence 1 23567999996 44443 56655544433 899999999998776653 68999999864 223
Q ss_pred EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
.+.-.....+.. +++++|++.|+|..... .....||.+|+++++.+.+....
T Consensus 364 ~l~~p~~~~~~~------~~~~~d~~~l~~~~ss~-----------------~tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 364 EVALPGLGSVSG------FNGKHDDPALYFGFENY-----------------AQPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp EECCSSSSEEEE------CCCCTTCSCEEEEEECS-----------------SSCCEEEEECTTTCCEEEEECCC
T ss_pred EeecCCCceEEe------eecCCCCCEEEEEecCC-----------------CCCCEEEEEECCCCeEEEEEeCC
Confidence 332111111111 55788999988886321 12346999999999888777544
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=163.54 Aligned_cols=208 Identities=14% Similarity=0.115 Sum_probs=136.1
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC----C
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR----G 712 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----G 712 (958)
.+.+.++|.+.+| .+.+++|+|+++++.+ ++|+||++||++.....+. .........+..|+++ +
T Consensus 39 g~~~~~~~~s~~~-~~~~~vy~P~~~~~~~--~~Pvlv~lHG~~~~~~~~~--------~~~~~~~~~~~~l~~~g~~~~ 107 (297)
T 1gkl_A 39 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTIF--------SNDVKLQNILDHAIMNGELEP 107 (297)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTSTT--------STTTCHHHHHHHHHHTTSSCC
T ss_pred ceEEEEEEEcCCC-EEEEEEEeCCCCCCCC--CCCEEEEECCCCCCcchhh--------cccchHHHHHHHHHHcCCCCC
Confidence 4567888988775 8999999999986533 5999999999753211100 0000112345567776 4
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCC------------CCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV------------AHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~------------~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
|+|+.+++++..+ ....+....++|+.. ++.++.. .|+++++|+|+||||++|+.++.++
T Consensus 108 ~ivv~pd~~~~~~-----~~~~~~~~~~~~l~~---~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~ 179 (297)
T 1gkl_A 108 LIVVTPTFNGGNC-----TAQNFYQEFRQNVIP---FVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNC 179 (297)
T ss_dssp EEEEECCSCSTTC-----CTTTHHHHHHHTHHH---HHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHH
T ss_pred EEEEEecCcCCcc-----chHHHHHHHHHHHHH---HHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhC
Confidence 9999977654322 122333334444444 4444422 3677899999999999999999999
Q ss_pred CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
|++|+++++++|.+.+... ..........+... ..+.....++++.+|++|.. ..+++++.++|+.
T Consensus 180 p~~f~~~v~~sg~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~----~~~~~~l~~~L~~ 245 (297)
T 1gkl_A 180 LDYVAYFMPLSGDYWYGNS-------PQDKANSIAEAINR---SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKA 245 (297)
T ss_dssp TTTCCEEEEESCCCCBSSS-------HHHHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHT
T ss_pred chhhheeeEeccccccCCc-------cchhhhHHHHHHhh---ccCCcCcEEEEEEeCCCccc----chhHHHHHHHHHH
Confidence 9999999999987532110 00000011111111 11222345677789999975 5678899999999
Q ss_pred CC----------CcEEEEEeCCCCccC
Q 002164 861 HG----------ALCRLVILPFESHGY 877 (958)
Q Consensus 861 ~g----------~~~~~~~~p~~~H~~ 877 (958)
.| +++++.++||++|.+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 246 LPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp STTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred cCCccccccccCCceEEEECCCCCcCH
Confidence 98 699999999999975
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-15 Score=161.60 Aligned_cols=275 Identities=9% Similarity=-0.030 Sum_probs=176.1
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...++|||||++|++..... ........|+++|+++++.......... ...++|+|||+.++++..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~------- 108 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQS--RKLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNT------- 108 (353)
T ss_dssp EEEEEEETTTTEEEEEECCC--TTTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEET-------
T ss_pred ccceEECCCCCEEEEEcCCC--cCCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEec-------
Confidence 45689999999997765311 0001256899999999887665543332 458899999998887610
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--c--------cccccc
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--A--------VYTSLD 338 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--~--------~~~~~~ 338 (958)
....|+++|+ +|+. ..+..+ . ....+.
T Consensus 109 -----------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 109 -----------------------------------------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp -----------------------------------------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred -----------------------------------------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 1246888888 7754 333221 1 146689
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|||||++|++..... .+.|++||+++++......... ..+..+.|+|||+.+++.
T Consensus 148 ~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~l~~~-- 202 (353)
T 3vgz_A 148 ADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKRLYTT-- 202 (353)
T ss_dssp EETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTEEEEE--
T ss_pred ECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCEEEEE--
Confidence 999999988876321 3479999998766543322110 224678999999988774
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCce-EEEee----ccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCC
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL----DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~----~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~ 493 (958)
...+.++++|. .+++.. .+... ......++|+|||+.|++....+ ..|+++|+.++
T Consensus 203 -----------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~v~~~d~~~~-- 263 (353)
T 3vgz_A 203 -----------NADGELITIDT---ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRNG-- 263 (353)
T ss_dssp -----------CTTSEEEEEET---TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS---SEEEEEETTTC--
T ss_pred -----------cCCCeEEEEEC---CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC---CEEEEEECCCC--
Confidence 33567889985 433332 23221 12234589999999987765332 46899998775
Q ss_pred CcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcc
Q 002164 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (958)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~ 573 (958)
+......... . ..+.|+|||++++.... ....|++||+++++..........
T Consensus 264 ~~~~~~~~~~--~------~~~~~s~dg~~l~v~~~--------------------~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 264 NILAKVAAPE--S------LAVLFNPARNEAYVTHR--------------------QAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp CEEEEEECSS--C------CCEEEETTTTEEEEEET--------------------TTTEEEEEETTTTEEEEEEECCSE
T ss_pred cEEEEEEcCC--C------ceEEECCCCCEEEEEEC--------------------CCCeEEEEECCCCeEEEEEecCCC
Confidence 2222222111 1 12789999998776641 113699999998887665544321
Q ss_pred cccceeEeecCCCccccccccCCEEEEEEec
Q 002164 574 KYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (958)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (958)
+. ..+|++||+.+++....
T Consensus 316 -----~~-------~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 -----PN-------SLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----EE-------EEEECTTSCEEEEEEEC
T ss_pred -----CC-------eEEEcCCCCEEEEEEcc
Confidence 12 25789999988887765
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=167.20 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=154.3
Q ss_pred CCcEEEEEEEeCC--C--eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-H
Q 002164 636 SLQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-A 710 (958)
Q Consensus 636 ~~~~~~~~~~~~d--g--~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~ 710 (958)
......+.|.+.| | ..+.+++++|.+. .++.|+|++.||.... .. ..+..........+..|+ +
T Consensus 40 ~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~----~~~~PvV~~~HG~~~~-~~------~~ps~~~~~~~~~~~~lal~ 108 (377)
T 4ezi_A 40 DLQLYKINYKTQSPDGNLTIASGLVAMPIHP----VGQVGIISYQHGTRFE-RN------DVPSRNNEKNYIYLAAYGNS 108 (377)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEESSC----SSCEEEEEEECCCCCS-TT------CSGGGCCGGGHHHHHHHTTT
T ss_pred CcEEEEEEEEEECCCCCEEEEEEEEEECCCC----CCCCcEEEEeCCCcCC-cc------cCCCcCcccchHHHHHHHHh
Confidence 3456677887765 4 5689999999863 2469999999996521 10 111100011123456688 9
Q ss_pred CCcEEEEcCCCCCCCCCCccc-chhh--H---HHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhCC--
Q 002164 711 RGFAILGGPTTPIIGEGDEEA-NDRF--V---EQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHAP-- 781 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~-~~~~--~---~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-- 781 (958)
+||+|+++|++ |+|.+.. ...+ . ...+.|...++..+.+ .+..+.++|+++|||+||+++++++...|
T Consensus 109 ~Gy~Vv~~D~r---G~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~ 185 (377)
T 4ezi_A 109 AGYMTVMPDYL---GLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKE 185 (377)
T ss_dssp TCCEEEEECCT---TSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCC---CCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhh
Confidence 99999995554 5554432 1111 1 2233444444443433 34446789999999999999999988753
Q ss_pred --C-ceeEEEEeccCCCCCC-------CC------C-C------------cc-------cccchhhh-------------
Q 002164 782 --H-LFCCGIARSGAYNRTL-------TP------F-G------------FQ-------NEDRTLWE------------- 812 (958)
Q Consensus 782 --~-~~~a~v~~~~~~~~~~-------~~------~-~------------~~-------~~~~~~~~------------- 812 (958)
+ .+.++++.++++|... .. + + +. .......+
T Consensus 186 ~~~l~l~g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 265 (377)
T 4ezi_A 186 YPDLPVSAVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEIL 265 (377)
T ss_dssp CTTSCCCEEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHH
T ss_pred CCCCceEEEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhh
Confidence 3 5889999888766211 00 0 0 00 00000000
Q ss_pred -----cH-----HHHH---h--cCc-cc------c--cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 813 -----AT-----STYV---E--MSP-FM------S--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 813 -----~~-----~~~~---~--~sp-~~------~--~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
.. ..+. . .+| +. . -.++++|+||+||++|.+|| +.++.+++++++..|. ++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp--~~~~~~l~~~l~~~G~-v~~~ 342 (377)
T 4ezi_A 266 QALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVP--YAGAEMAYHSFRKYSD-FVWI 342 (377)
T ss_dssp HHSCSSGGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSC--HHHHHHHHHHHHTTCS-CEEE
T ss_pred hccCCCHHHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCC--HHHHHHHHHHHHhcCC-EEEE
Confidence 00 0000 0 111 00 0 12467899999999999999 9999999999999999 9999
Q ss_pred EeCC--CCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 869 ILPF--ESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 869 ~~p~--~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
.||+ .+|... .......+++||++++..+
T Consensus 343 ~~~~~~~~H~~~----~~~~~~~~~~wl~~~~~~~ 373 (377)
T 4ezi_A 343 KSVSDALDHVQA----HPFVLKEQVDFFKQFERQE 373 (377)
T ss_dssp EESCSSCCTTTT----HHHHHHHHHHHHHHHHTSS
T ss_pred EcCCCCCCccCh----HHHHHHHHHHHHHHhhcch
Confidence 9999 899864 2456788999999998643
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=179.72 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=137.9
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCC----CCCCCCcCcHHHHHHH
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS----PNEFPRIGSTSVLLWL 709 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~----~~~~~~~~~~~~~~la 709 (958)
...+..+.+++++.+|..+++++|+|++. ++++|+||++||+........+ ..+. ...|.......++.|+
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vv~~HG~g~~~~~~~~-~~g~~~~~~~~y~~~~~~~a~~la 161 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI----NKPVPAILCIPGSGGNKEGLAG-EPGIAPKLNDRYKDPKLTQALNFV 161 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC----CSCEEEEEEECCTTCCHHHHHT-CCCSSSTTCCSTTCTTTCHHHHHH
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC----CCCccEEEEEcCCCCCcccccc-cccccccccccccchHHHHHHHHH
Confidence 34456788999999999999999999863 3459999999997432110000 0000 0011100113677899
Q ss_pred HCCcEEEEcCCCCCCCCCCcccc----------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 002164 710 ARGFAILGGPTTPIIGEGDEEAN----------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~----------------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S 767 (958)
++||+|+++|++ |+|.+... ..+....+.|+.++++||.+++.+|++||+|+|||
T Consensus 162 ~~Gy~Vl~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S 238 (398)
T 3nuz_A 162 KEGYIAVAVDNP---AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFS 238 (398)
T ss_dssp TTTCEEEEECCT---TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEG
T ss_pred HCCCEEEEecCC---CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEC
Confidence 999999996655 54444211 12233456899999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEEeccCCCCCC-----CC---CC---cccccchhhhcHHHHHhcCcccccCC-CCCCEEE
Q 002164 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTL-----TP---FG---FQNEDRTLWEATSTYVEMSPFMSANK-LKKPILL 835 (958)
Q Consensus 768 ~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-----~~---~~---~~~~~~~~~~~~~~~~~~sp~~~~~~-~~~P~Li 835 (958)
|||++|+.+++.. ++++++|+.++++.... .. .+ +....... .+..+...+....+.. ...|+||
T Consensus 239 ~GG~~a~~~aa~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~ap~PlLi 315 (398)
T 3nuz_A 239 LGTEPMMVLGTLD-TSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHL--IPDFWKNFNFPDIVAALAPRPIIL 315 (398)
T ss_dssp GGHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGC--CTTHHHHCCHHHHHHHTTTSCEEE
T ss_pred HhHHHHHHHHhcC-CcEEEEEEecccccchhhhhhhccccccccccCCccHHHh--cchHhhhCCHHHHHHhhCCCcEEE
Confidence 9999999999887 57888888766543110 00 00 00000000 0000111111111111 1369999
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p 871 (958)
+||+.|.. ..+..++++++.. ...+++.+||
T Consensus 316 i~G~~D~~----v~~~~~~y~~~g~-~~~~~~~~~p 346 (398)
T 3nuz_A 316 TEGGLDRD----LDLVRKAYAIVGT-PDNVKIYHYK 346 (398)
T ss_dssp CSCBCHHH----HHHHHHHHHHHTC-TTSEEECCCG
T ss_pred eeCCchHH----HHHHHHHHHHcCC-CcceEEEEeC
Confidence 99999954 4667777776543 3467777777
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-16 Score=166.19 Aligned_cols=229 Identities=11% Similarity=0.044 Sum_probs=143.8
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+...++..+|.+++++.+.|.+..+ .+.|+||++||..... ......+..|+++||.|++
T Consensus 8 ~~~~i~~~dG~~l~~~~~~p~~~~~---~~~~~VvllHG~g~~~---------------~~~~~~~~~L~~~G~~Vi~-- 67 (305)
T 1tht_A 8 IAHVLRVNNGQELHVWETPPKENVP---FKNNTILIASGFARRM---------------DHFAGLAEYLSTNGFHVFR-- 67 (305)
T ss_dssp EEEEEEETTTEEEEEEEECCCTTSC---CCSCEEEEECTTCGGG---------------GGGHHHHHHHHTTTCCEEE--
T ss_pred eEEEEEcCCCCEEEEEEecCcccCC---CCCCEEEEecCCccCc---------------hHHHHHHHHHHHCCCEEEE--
Confidence 4567788899999999988754111 1268899999953211 1112456678889999999
Q ss_pred CCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
+|.+|+ |.+... .........|+.++++++.+.+ .++++|+||||||.+|+.+|.+ | +++++|+.++..+.
T Consensus 68 -~D~rGh~G~S~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~ 141 (305)
T 1tht_A 68 -YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNL 141 (305)
T ss_dssp -ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCH
T ss_pred -eeCCCCCCCCCCcccceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhH
Confidence 555676 666432 1124567889999999998543 3689999999999999999988 6 79999988775331
Q ss_pred CCC-----CCCc-------ccc-cchh-h-hcHHHH----Hhc------CcccccCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 797 TLT-----PFGF-------QNE-DRTL-W-EATSTY----VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 797 ~~~-----~~~~-------~~~-~~~~-~-~~~~~~----~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
... ...+ ... .... . .....+ ... +....+.++++|+|++||++|..+| +..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp--~~~~ 219 (305)
T 1tht_A 142 RDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEEV 219 (305)
T ss_dssp HHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHHH
T ss_pred HHHHHHHhhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccC--HHHH
Confidence 000 0000 000 0000 0 000111 000 1223567899999999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHhh
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~-~~~~~~~~~i~~fl~~~l 898 (958)
+++++.+.. ..++++++|++||.+... +....++..+.+|.....
T Consensus 220 ~~l~~~i~~--~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~~~ 265 (305)
T 1tht_A 220 YDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAMD 265 (305)
T ss_dssp HHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHHhC
Confidence 877765532 247999999999997421 112344455555555443
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=167.33 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=153.5
Q ss_pred CCcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE
Q 002164 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (958)
Q Consensus 636 ~~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (958)
..+.+.+++.+. .|.++.++ |+|++ .|+||++||++... +...|... ....+.+++.||+
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~--------~p~vvllHG~~~~~---------~~~~w~~~-~~~~~~~~~~~~~ 68 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG--------PHAVYLLDAFNAGP---------DVSNWVTA-GNAMNTLAGKGIS 68 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS--------SSEEEEECCSSCCS---------SSCHHHHT-SCHHHHHTTSSSE
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC--------CCEEEEECCCCCCC---------Chhhhhhc-ccHHHHHhcCCeE
Confidence 345677888875 68889988 88864 27999999963100 00111100 0134556778999
Q ss_pred EEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 715 ILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 715 vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
|+.++..+..++...... ..+.....+|+. .++.++..+|+++++|+|+||||++|+.++.++|++|+++++++|
T Consensus 69 vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg 145 (280)
T 1r88_A 69 VVAPAGGAYSMYTNWEQDGSKQWDTFLSAELP---DWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 145 (280)
T ss_dssp EEEECCCTTSTTSBCSSCTTCBHHHHHHTHHH---HHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred EEEECCCCCCccCCCCCCCCCcHHHHHHHHHH---HHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC
Confidence 999777443333211111 122233334444 444454447888999999999999999999999999999999999
Q ss_pred CCCCCCCCCC------cc----cccchhhhc--HHHHHhcCcccccCCC---CCCEEEEe----eCCCCC-------CCC
Q 002164 793 AYNRTLTPFG------FQ----NEDRTLWEA--TSTYVEMSPFMSANKL---KKPILLVH----GEEDNN-------SGT 846 (958)
Q Consensus 793 ~~~~~~~~~~------~~----~~~~~~~~~--~~~~~~~sp~~~~~~~---~~P~Lii~----G~~D~~-------v~~ 846 (958)
.++....... .. ......|.. ...+...+|+..+.++ +.|+++.| |+.|.. ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~- 224 (280)
T 1r88_A 146 FLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEA- 224 (280)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHH-
T ss_pred ccCcCCccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHH-
Confidence 8764221000 00 000011111 1234556777666555 57999999 999984 46
Q ss_pred ChHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 847 LTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
..++++++++|+..| +++++.+|++++|.+. .....+...+.||.+-+.
T Consensus 225 -~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 225 -MGNSRMFYNQYRSVGGHNGHFDFPASGDNGWG---SWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp -HHHHHHHHHHHHHTTCCSEEEECCSSCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHCCCcceEEEecCCCCcChh---HHHHHHHHHHHHHHHHHh
Confidence 889999999999999 9999999988899762 234445666777766654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-15 Score=160.88 Aligned_cols=277 Identities=10% Similarity=-0.017 Sum_probs=166.7
Q ss_pred eceeEEEccCCCCCCce-eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~lt~~~~~ 240 (958)
+.|.+|++.+ ++. ..+. .. .... .++|||||++|+++.. +...|+++++++++. .........
T Consensus 20 ~~v~~~d~~~----~~~~~~~~-~~-~~~~-~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 20 RRISFFSTDT----LEILNQIT-LG-YDFV-DTAITSDCSNVVVTSD--------FCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp TEEEEEETTT----CCEEEEEE-CC-CCEE-EEEECSSSCEEEEEES--------TTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CeEEEEeCcc----cceeeeEE-cc-CCcc-eEEEcCCCCEEEEEeC--------CCCeEEEEECCCCceeEEecccCCC
Confidence 3789999854 333 2332 22 2345 8999999998887652 245999999998875 333222222
Q ss_pred cccccccc-eEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 241 YLNAIFDN-FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 241 ~~~~~~~~-~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
... ++|+|||++|+.. ... + ....|+++
T Consensus 85 -----~~~~~~~s~dg~~l~~~-~~~--------------------------------------~-------~~~~i~v~ 113 (331)
T 3u4y_A 85 -----SMADVDITPDDQFAVTV-TGL--------------------------------------N-------HPFNMQSY 113 (331)
T ss_dssp -----CCCCEEECTTSSEEEEC-CCS--------------------------------------S-------SSCEEEEE
T ss_pred -----CccceEECCCCCEEEEe-cCC--------------------------------------C-------CcccEEEE
Confidence 335 8999999999832 100 0 11268899
Q ss_pred Ec-CCeeeecC-CCccccccccCCCCcEEEEEeecCCccccccCCCCCce-eEEEeccCc-eEEEeccCCccccCccccc
Q 002164 320 SL-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ-VGVWTTDGI-FVRELCDLPLAEDIPIAFN 395 (958)
Q Consensus 320 ~~-~g~~~~l~-~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~-i~l~d~~~~-~~~~l~~~~~~~~~p~~~~ 395 (958)
++ +++..... .......++|||||++|++..... .. +.+|+++.. ..........
T Consensus 114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~--------- 172 (331)
T 3u4y_A 114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFI--------- 172 (331)
T ss_dssp ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEE---------
T ss_pred ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccc---------
Confidence 98 77554433 334567899999999988776432 25 888988732 2111100000
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEeeccccCceeeecCCceEEE
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVY 472 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~ 472 (958)
.....+..+.|+|||+.+++.. ...+.|+++++ .+++. ............++|+|||++|++
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVAN------------LIGNSIGILET---QNPENITLLNAVGTNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEE------------TTTTEEEEEEC---SSTTSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred cCCCCccceEECCCCCEEEEEe------------CCCCeEEEEEC---CCCcccceeeeccCCCCCceEEECCCCCEEEE
Confidence 0013456899999999877741 23457899996 44443 222233455678999999999877
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEeccC----CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCC
Q 002164 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRS----SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPE 548 (958)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 548 (958)
....+ ..|+++++.++........... ....+ ....+.|||||++|++...
T Consensus 238 ~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~v~~~------------------- 292 (331)
T 3u4y_A 238 LTEST---VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF---GANQMALNKTETKLFISAN------------------- 292 (331)
T ss_dssp ECSSE---EEEEEEETTTTEEEEEEEEECCCCCCCGGGT---TCCCEEECTTSSEEEEEET-------------------
T ss_pred EEcCC---CEEEEEECCCCceeeecccccccccCCCCcc---cccceEECCCCCEEEEecC-------------------
Confidence 65432 4588899887521111111111 11111 1112689999999877652
Q ss_pred CCCCeEEEEECCCCceEEE
Q 002164 549 GNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 549 ~~~~~L~~~dl~~g~~~~l 567 (958)
....|.+||+++.....+
T Consensus 293 -~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 293 -ISRELKVFTISGKVVGYV 310 (331)
T ss_dssp -TTTEEEEEETTSCEEEEC
T ss_pred -CCCcEEEEEecCCcccce
Confidence 123599999987655443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=167.36 Aligned_cols=286 Identities=12% Similarity=0.100 Sum_probs=176.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce---eee-ccC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE---IEI-QGF 185 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~---~~l-t~~ 185 (958)
.+..++|||||++||..+.+ +.|.||++.. +.. ..+ .+
T Consensus 18 ~v~~l~~sp~g~~las~~~D---------------------------------~~i~iw~~~~----~~~~~~~~~~~~- 59 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGD---------------------------------RRIRIWGTEG----DSWICKSVLSEG- 59 (345)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SCEEEEEEET----TEEEEEEEECSS-
T ss_pred cEEEEEECCCCCEEEEEcCC---------------------------------CeEEEEEcCC----Ccceeeeeeccc-
Confidence 45678999999999998875 4789999854 221 111 22
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc--CCCCccccccccceEEecCCeEEEEEec
Q 002164 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt--~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
+...+...+|||||++|+.... ...+.+|+..++....+. ..... .+..++|+|||+.|+...
T Consensus 60 -h~~~v~~~~~sp~g~~l~s~s~---------D~~v~iw~~~~~~~~~~~~~~~h~~----~v~~v~~sp~~~~l~s~s- 124 (345)
T 3fm0_A 60 -HQRTVRKVAWSPCGNYLASASF---------DATTCIWKKNQDDFECVTTLEGHEN----EVKSVAWAPSGNLLATCS- 124 (345)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET---------TSCEEEEEECCC-EEEEEEECCCSS----CEEEEEECTTSSEEEEEE-
T ss_pred -cCCcEEEEEECCCCCEEEEEEC---------CCcEEEEEccCCCeEEEEEccCCCC----CceEEEEeCCCCEEEEEE-
Confidence 2347889999999999988652 445666776665432221 22222 277899999999998762
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----eeecCCC-cccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSL 337 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~~l~~~-~~~~~~ 337 (958)
....|.++++ ++. ...+... ..+..+
T Consensus 125 ------------------------------------------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 125 ------------------------------------------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp ------------------------------------------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred ------------------------------------------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 1234556666 432 2233333 667889
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
+|+|||+.|+..+.+ +.+.+|+...+....+.... +....+..++|+|||+.|+..
T Consensus 157 ~~~p~~~~l~s~s~d-------------~~i~~w~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~g~~l~s~- 212 (345)
T 3fm0_A 157 VWHPSQELLASASYD-------------DTVKLYREEEDDWVCCATLE----------GHESTVWSLAFDPSGQRLASC- 212 (345)
T ss_dssp EECSSSSCEEEEETT-------------SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECTTSSEEEEE-
T ss_pred EECCCCCEEEEEeCC-------------CcEEEEEecCCCEEEEEEec----------CCCCceEEEEECCCCCEEEEE-
Confidence 999999999888743 48999998866543222211 112456789999999987763
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCc------------eEE---Ee-eccccCceeeecCCceEEEEEeccccce
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------------EIL---HK-LDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~------------~~l---~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
+..+.|.+|+. ...+.. ..+ .. +...+..++|+|++..|+..+.++. .
T Consensus 213 ------------s~D~~v~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--i 276 (345)
T 3fm0_A 213 ------------SDDRTVRIWRQ--YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA--I 276 (345)
T ss_dssp ------------ETTSCEEEEEE--ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC--E
T ss_pred ------------eCCCeEEEecc--ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe--E
Confidence 34556777763 111111 111 11 2345667899999999988766544 7
Q ss_pred EEEEEcCCCCCCCcEE-----EeccCCccccCCCCCCceEeccCCc-eEEEEeeeccCCCcEEEEccCCCCCCCCCCeEE
Q 002164 482 RTWVISPGSKDVAPRI-----LFDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (958)
++|.++.......+.. ........+.. ++|+|++. .|+....+ ..|.
T Consensus 277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~laS~s~D---------------------g~v~ 329 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC------VAWNPKEPGLLASCSDD---------------------GEVA 329 (345)
T ss_dssp EEEEECTTSCTTSCCEEEEEEETTSSSSCEEE------EEECSSSTTEEEEEETT---------------------SCEE
T ss_pred EEEEeCCCCCcceeeEEEEeeecccccCcEeE------eEEeCCCceEEEEcCCC---------------------CcEE
Confidence 7888775442112111 11223333333 78999985 56655421 2488
Q ss_pred EEECCCCc
Q 002164 556 LFDINTGS 563 (958)
Q Consensus 556 ~~dl~~g~ 563 (958)
+|++.+++
T Consensus 330 ~W~~~~~~ 337 (345)
T 3fm0_A 330 FWKYQRPE 337 (345)
T ss_dssp EEEECC--
T ss_pred EEEecCCC
Confidence 89887654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=165.23 Aligned_cols=305 Identities=10% Similarity=0.016 Sum_probs=185.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC-ccccccccceEEecCCeEEEEEecCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
..+..++|+| ++.++++.. ....|++|++++|+..+...... ......+..++|+|||+.++...
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~--------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----- 188 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLL--------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM----- 188 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBT--------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-----
T ss_pred CCceEEEEeC-CCeEEEEeC--------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-----
Confidence 4566899999 556666542 24469999999988776432211 00011266789999998877551
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk 344 (958)
....|+++++ +++. ..+... ..+..++|+|||+
T Consensus 189 --------------------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 189 --------------------------------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp --------------------------------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT
T ss_pred --------------------------------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC
Confidence 2346888888 6643 334333 5677899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+++++... ++.|.+||+.+++........ ..+..+.|+|||+.+++.......
T Consensus 225 ~l~~~~~~------------~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~-- 277 (433)
T 3bws_A 225 LVYCSNWI------------SEDISVIDRKTKLEIRKTDKI-------------GLPRGLLLSKDGKELYIAQFSASN-- 277 (433)
T ss_dssp EEEEEETT------------TTEEEEEETTTTEEEEECCCC-------------SEEEEEEECTTSSEEEEEEEESCT--
T ss_pred EEEEEecC------------CCcEEEEECCCCcEEEEecCC-------------CCceEEEEcCCCCEEEEEECCCCc--
Confidence 99877632 348999999866543322211 234679999999988775322110
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
. ....+.|++|++ .+++.............++|+|||+.|+++...+ ..|+++++.++ +....... ..
T Consensus 278 --~-~~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~v~v~d~~~~--~~~~~~~~-~~ 345 (433)
T 3bws_A 278 --Q-ESGGGRLGIYSM---DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC---SKIEVYDLKEK--KVQKSIPV-FD 345 (433)
T ss_dssp --T-CSCCEEEEEEET---TTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT---TEEEEEETTTT--EEEEEEEC-SS
T ss_pred --c-ccCCCeEEEEEC---CCCcEEeeccCCCCcceEEECCCCCEEEEEecCC---CEEEEEECCCC--cEEEEecC-CC
Confidence 0 013557999996 4444444444444667799999999988876544 35777787764 22222221 11
Q ss_pred cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecC
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (958)
.+.. +.|+|||++|+......+......+.. ......|++||+++++.......... +.
T Consensus 346 ~~~~------~~~s~dg~~l~~~~~~~~~~~~~~~~~------g~~dg~v~~~d~~~~~~~~~~~~~~~-----~~---- 404 (433)
T 3bws_A 346 KPNT------IALSPDGKYLYVSCRGPNHPTEGYLKK------GLVLGKVYVIDTTTDTVKEFWEAGNQ-----PT---- 404 (433)
T ss_dssp SEEE------EEECTTSSEEEEEECCCCCTTTCTTSC------CSSCCEEEEEETTTTEEEEEEECSSS-----EE----
T ss_pred CCCe------EEEcCCCCEEEEEecCCCccccccccc------cccceEEEEEECCCCcEEEEecCCCC-----Cc----
Confidence 2222 789999998887763211000000000 01123799999999887766654321 12
Q ss_pred CCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002164 585 DQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (958)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~ 617 (958)
..+|+|||+.+++.... ...++++++.
T Consensus 405 ---~~~~s~dg~~l~~~~~~---d~~i~v~~~~ 431 (433)
T 3bws_A 405 ---GLDVSPDNRYLVISDFL---DHQIRVYRRD 431 (433)
T ss_dssp ---EEEECTTSCEEEEEETT---TTEEEEEEET
T ss_pred ---eEEEcCCCCEEEEEECC---CCeEEEEEec
Confidence 25789999888765532 2456776653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-15 Score=161.73 Aligned_cols=283 Identities=10% Similarity=-0.023 Sum_probs=176.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
...++|||||++|++.... .... ...+.|+++++.+ + ...+.+. .+..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~---------------------~~~~-----~~~~~v~~~d~~~-~--~~~~~~~---~~~~ 90 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQ---------------------SRKL-----DKGGVVYRLDPVT-L--EVTQAIH---NDLK 90 (353)
T ss_dssp EEEEEEETTTTEEEEEECC---------------------CTTT-----EESEEEEEECTTT-C--CEEEEEE---ESSC
T ss_pred ccceEECCCCCEEEEEcCC---------------------CcCC-----CCCccEEEEcCCC-C--eEEEEEe---cCCC
Confidence 4578999999999776642 0000 0014789998754 2 1223332 2235
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-----cccccceEEecCCeEEEEEecCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----NAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-----~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
...+.|+|||++|+++.. ....|+++|+++++.......+.... ......++|+|||+.|++....
T Consensus 91 ~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~- 161 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNT--------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG- 161 (353)
T ss_dssp CCSEEEETTTTEEEEEET--------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-
T ss_pred cceEEECCCCCEEEEEec--------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-
Confidence 678999999998887642 24589999999988755443322100 0013468999999988876100
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-C-ccccccccCCC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPD 342 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~~~~~SpD 342 (958)
....|+++|+ +++...... . .....++||||
T Consensus 162 ----------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 162 ----------------------------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp ----------------------------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred ----------------------------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence 1345999999 776554433 3 44678899999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|++|++... .+.+++||+.+++.......... +.......+.|+|||+.+++. .
T Consensus 196 g~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~-~---- 249 (353)
T 3vgz_A 196 GKRLYTTNA-------------DGELITIDTADNKILSRKKLLDD--------GKEHFFINISLDTARQRAFIT-D---- 249 (353)
T ss_dssp TTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCS--------SSCCCEEEEEEETTTTEEEEE-E----
T ss_pred CCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCC--------CCCcccceEEECCCCCEEEEE-e----
Confidence 999988763 24899999987665433221110 001233568999999988663 1
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
...+.|+++|. .+++......... ...+.|+|||++|+++...+ ..|+++|+.++ +........
T Consensus 250 -------~~~~~v~~~d~---~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~--~~~~~~~~~ 313 (353)
T 3vgz_A 250 -------SKAAEVLVVDT---RNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---GKVSVIDAKSY--KVVKTFDTP 313 (353)
T ss_dssp -------SSSSEEEEEET---TTCCEEEEEECSS-CCCEEEETTTTEEEEEETTT---TEEEEEETTTT--EEEEEEECC
T ss_pred -------CCCCEEEEEEC---CCCcEEEEEEcCC-CceEEECCCCCEEEEEECCC---CeEEEEECCCC--eEEEEEecC
Confidence 23467999995 4444333222222 35689999999887765433 36888888774 222222211
Q ss_pred CccccCCCCCCceEeccCCceEEEEee
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
..... +.|+|||++|+....
T Consensus 314 -~~~~~------~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 314 -THPNS------LALSADGKTLYVSVK 333 (353)
T ss_dssp -SEEEE------EEECTTSCEEEEEEE
T ss_pred -CCCCe------EEEcCCCCEEEEEEc
Confidence 11122 789999998877764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-15 Score=166.24 Aligned_cols=279 Identities=9% Similarity=0.041 Sum_probs=172.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
...++|||||++|+....+ +.+++|++.. +..... +.....
T Consensus 59 ~~~~~~s~~g~~l~~~~~d---------------------------------~~v~i~d~~~----~~~~~~--~~~~~~ 99 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD---------------------------------GHDFLFNTII----RDGSKM--LKRADY 99 (420)
T ss_dssp CTTCEEEEEETTEEEEEET---------------------------------TEEEEEECCS----EETTTT--SCSCCE
T ss_pred ccceeeeecCCeEEEEEcC---------------------------------CcEEEEEecc----cceeeE--EecCCc
Confidence 4578999999999988765 4789999854 221111 212234
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
.....|+|||++|+.... ...|.+|++.+++........... +..++|+|||+.|+...
T Consensus 100 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s-------- 158 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTT---------EGDIKVLDSNFNLQREIDQAHVSE----ITKLKFFPSGEALISSS-------- 158 (420)
T ss_dssp EEEEEECSSSCEEEEEET---------TSCEEEECTTSCEEEEETTSSSSC----EEEEEECTTSSEEEEEE--------
T ss_pred eEEEEEecCCCEEEEEEC---------CCCEEEEeCCCcceeeecccccCc----cEEEEECCCCCEEEEEe--------
Confidence 555679999999998652 567899999988877664333332 77999999999888761
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
....|.++++ +++ ...+... ..+..++|+|||+.|+
T Consensus 159 -----------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 159 -----------------------------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp -----------------------------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred -----------------------------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 2345788888 664 4445444 7788999999999999
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCc--cc---------ccccccCcceeeeecCCCCceE
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIP--IA---------FNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p--~~---------~~~~~~~~~~~~~spDG~~l~~ 415 (958)
..+.+ +.+.+||+.++... .+.......... .. .......+..+.|+|||+.++.
T Consensus 198 s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 198 SASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 77633 48999999865443 332211110000 00 0001134566889999998876
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
. ...+.|.+|++ ..+.....+.. ....+..+.|+|+|+.++++...++ .|+++++.++...
T Consensus 265 ~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 265 G-------------HVSGVITVHNV--FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPECP 326 (420)
T ss_dssp E-------------ETTSCEEEEET--TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTSC
T ss_pred E-------------cCCCeEEEEEC--CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcCc
Confidence 3 44567899996 23333333322 3456778999999994444444332 4666677664221
Q ss_pred cEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...+.......+. ..++++|++|+...
T Consensus 327 ~~~~~~~~~~~v~-------~~~~~~~~~l~s~~ 353 (420)
T 3vl1_A 327 VGEFLINEGTPIN-------NVYFAAGALFVSSG 353 (420)
T ss_dssp SEEEEESTTSCEE-------EEEEETTEEEEEET
T ss_pred hhhhhccCCCCce-------EEEeCCCCEEEEec
Confidence 2223221222222 23567887766554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=165.37 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=169.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..|+| ||++|+|+....+........+||++++++++.+++ .. +..++|||||+.|+|......
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~------~~~~~~SpDg~~la~~~~~~~--- 81 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---EN------ATMPRISPDGKKIAFMRANEE--- 81 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ES------CEEEEECTTSSEEEEEEEETT---
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---cc------CCCeEECCCCCEEEEEEeccC---
Confidence 5677888 999999987543222233467899999999998887 11 558999999999998821100
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
+ ...+||++++ +|+.++++.. . +..+.|||||++|+
T Consensus 82 ----------------------------------~-------~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~ 119 (347)
T 2gop_A 82 ----------------------------------K-------KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLL 119 (347)
T ss_dssp ----------------------------------T-------TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEE
T ss_pred ----------------------------------C-------CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEE
Confidence 0 2457999999 8888877765 5 78899999999999
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
|.+...+ .....+.+ ..+.|..||.....
T Consensus 120 ~~~~~~~-------------------~~~~~~~~--------------------~~~~~~~~g~~~~~------------ 148 (347)
T 2gop_A 120 IVGFKRR-------------------EDEDFIFE--------------------DDVPAWFDDLGFFD------------ 148 (347)
T ss_dssp EEEECCC-------------------C-----------------------------CCCC--------------------
T ss_pred EEEccCC-------------------CcCCcEEE--------------------cccceeecCccccc------------
Confidence 9984311 00000111 11224444433211
Q ss_pred ccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecCCceEEEEEeccc-----c-ceEEEEEcCCCCCCCcEEEec
Q 002164 428 EVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKT-----R-RTRTWVISPGSKDVAPRILFD 500 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~-~~~l~~~~~~~~~~~~~~~~~ 500 (958)
.....||++++ ++++. +.++. . .+..+.||||| |+|....+. . ..+||.++ + ++...++.
T Consensus 149 --~~~~~l~~~d~---~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~ 215 (347)
T 2gop_A 149 --GEKTTFWIFDT---ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--D--GKEEKMFE 215 (347)
T ss_dssp ---CEEEEEEEET---TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--T--TEEEEEEE
T ss_pred --CccceEEEEEC---CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--C--CceEEecc
Confidence 22456899995 66666 67766 4 77889999999 777665432 1 46899999 3 23444544
Q ss_pred cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeE
Q 002164 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (958)
Q Consensus 501 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~ 580 (958)
. ... ..+||||++|+|..... .........|+++| +++.++++..... .+.
T Consensus 216 ~--~~~--------~~~spdg~~l~~~~~~~-------------~~~~~~~~~l~~~d--~~~~~~l~~~~~~----~~~ 266 (347)
T 2gop_A 216 K--VSF--------YAVDSDGERILLYGKPE-------------KKYMSEHNKLYIYD--GKEVMGILDEVDR----GVG 266 (347)
T ss_dssp E--ESE--------EEEEECSSCEEEEECCS-------------SSCCCSSCEEEEEC--SSCEEESSTTCCS----EEE
T ss_pred C--cce--------eeECCCCCEEEEEEccc-------------cCCccccceEEEEC--CCceEeccccCCc----ccC
Confidence 3 111 34599999999887321 00011235799999 6777777654321 111
Q ss_pred eecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeec
Q 002164 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (958)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~ 626 (958)
. .+.|+ || +++...... ...+| ++ +|+.++++.
T Consensus 267 ~------~~~~s-dg--~~~~~~~~~-~~~l~-~~--~g~~~~~~~ 299 (347)
T 2gop_A 267 Q------AKIKD-GK--VYFTLFEEG-SVNLY-IW--DGEIKPIAK 299 (347)
T ss_dssp E------EEEET-TE--EEEEEEETT-EEEEE-EE--SSSEEEEEC
T ss_pred C------ccEEc-Cc--EEEEEecCC-cEEEE-Ec--CCceEEEec
Confidence 1 14577 77 555443322 35677 77 566666653
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-16 Score=163.09 Aligned_cols=218 Identities=10% Similarity=0.148 Sum_probs=140.9
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+...+|..+ .+|.|.+ ++.|+||++|||.+..++. ..+ .......+++.||.|+.++|+..
T Consensus 9 ~~~~~~~~~--~~y~p~~------~~~p~iv~~HGGg~~~g~~--------~~~---~~~~~~~l~~~g~~Vi~vdYrla 69 (274)
T 2qru_A 9 QTLANGATV--TIYPTTT------EPTNYVVYLHGGGMIYGTK--------SDL---PEELKELFTSNGYTVLALDYLLA 69 (274)
T ss_dssp EECTTSCEE--EEECCSS------SSCEEEEEECCSTTTSCCG--------GGC---CHHHHHHHHTTTEEEEEECCCCT
T ss_pred ccccCCeeE--EEEcCCC------CCCcEEEEEeCccccCCCh--------hhc---hHHHHHHHHHCCCEEEEeCCCCC
Confidence 344467555 6787753 2479999999987543321 111 12234557788999999888632
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCceeEEEEeccCCCCCCC-
Q 002164 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLT- 799 (958)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~~~~~~- 799 (958)
++..++..++|+.++++|+.++.. ++++|+|+|+|+||.+|+.++. ..+.++++++..+|..+....
T Consensus 70 --------Pe~~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~ 140 (274)
T 2qru_A 70 --------PNTKIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIK 140 (274)
T ss_dssp --------TTSCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGG
T ss_pred --------CCCCCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccC
Confidence 223567889999999999998743 2689999999999999999987 346788999988876652110
Q ss_pred -------CCC-------c-c--cccchhhhc-H------------HHHHhc--------Cccc--ccCCCCCCEEEEeeC
Q 002164 800 -------PFG-------F-Q--NEDRTLWEA-T------------STYVEM--------SPFM--SANKLKKPILLVHGE 839 (958)
Q Consensus 800 -------~~~-------~-~--~~~~~~~~~-~------------~~~~~~--------sp~~--~~~~~~~P~Lii~G~ 839 (958)
+.. + . ......+.. . ..+... .++. .+.++ +|+||++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~ 219 (274)
T 2qru_A 141 EPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASS 219 (274)
T ss_dssp SCCCSCSSCCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEET
T ss_pred CchhhccccccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEec
Confidence 000 0 0 000000000 0 000000 0010 12344 799999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHH
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQK 896 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~---~~~~~~~~~i~~fl~~ 896 (958)
.|..++ ..+++++.+++. ++++.++++++|++... +...++.+.+.+||.+
T Consensus 220 ~D~~~~--~~~~~~l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 220 SDEEVP--FRYSKKIGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp TCSSSC--THHHHHHHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCcC--HHHHHHHHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 999988 788877776654 46999999999998422 2234667788888865
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=168.94 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=144.1
Q ss_pred CCcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH-HHCC-
Q 002164 636 SLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARG- 712 (958)
Q Consensus 636 ~~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G- 712 (958)
....+.+++.+. .|..+..++|+|+++++.+ ++|+|+++||++... ... .+ ......+ ++.|
T Consensus 15 ~~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~Pvl~~lhG~~~~~-----~~~----~~----~~~~~~~~~~~g~ 79 (275)
T 2qm0_A 15 TSNTEQWKMYSKLEGKEYQIHISKPKQPAPDS--GYPVIYVLDGNAFFQ-----TFH----EA----VKIQSVRAEKTGV 79 (275)
T ss_dssp CTTEEEEEEECTTTCCEEEEEEECCSSCCCTT--CEEEEEEESHHHHHH-----HHH----HH----HHHHGGGHHHHCC
T ss_pred cCCceEEEEEecCCCCEEEEEEECCCCCCCCC--CccEEEEecChHHHH-----HHH----HH----HHHHhhcchhcCC
Confidence 345778888876 7899999999999987544 599999999964200 000 00 0011112 3467
Q ss_pred --cEEEEcCCCCCCCC---------CCccc-------------chhh-HHHHHHHH-HHHHHHHHHcCCCCCCcEEEEEe
Q 002164 713 --FAILGGPTTPIIGE---------GDEEA-------------NDRF-VEQLVACA-EAAVEEVVRRGVAHPSKIAVGGH 766 (958)
Q Consensus 713 --~~vl~~~~~~~~G~---------G~~~~-------------~~~~-~~~~~~D~-~~av~~l~~~~~~d~~~i~l~G~ 766 (958)
++|+.+++++...+ +.... .... .....+.+ .+.+.++.++..+|+++++|+||
T Consensus 80 ~~~ivV~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~ 159 (275)
T 2qm0_A 80 SPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGH 159 (275)
T ss_dssp CCCEEEEEECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEe
Confidence 99998766542111 10000 0000 01111112 24456666666688899999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
||||++|+.++.++|++|+++++.+|.+.+. . .......+.+.... .......|++++||+.|..++
T Consensus 160 S~GG~~a~~~~~~~p~~f~~~~~~s~~~~~~-----~----~~~~~~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~- 226 (275)
T 2qm0_A 160 XLGGLFALHILFTNLNAFQNYFISSPSIWWN-----N----KSVLEKEENLIIEL---NNAKFETGVFLTVGSLEREHM- 226 (275)
T ss_dssp THHHHHHHHHHHHCGGGCSEEEEESCCTTHH-----H----HGGGGGTTHHHHHH---HTCSSCEEEEEEEETTSCHHH-
T ss_pred cchhHHHHHHHHhCchhhceeEEeCceeeeC-----h----HHHHHHHHHHHhhh---cccCCCceEEEEeCCcccchh-
Confidence 9999999999999999999999999874210 0 00000011111100 023456799999999999877
Q ss_pred ChHHHHHHHHHH---HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 847 LTMQSDRFFNAL---KGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 847 ~~~~~~~~~~~l---~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
..++++++++| +..|+++++.++|+++|+.. ....+...++||
T Consensus 227 -~~~~~~~~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 227 -VVGANELSERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp -HHHHHHHHHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 89999999999 56788999999999999753 122334455554
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=175.83 Aligned_cols=153 Identities=8% Similarity=0.035 Sum_probs=107.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCC---CCCCCCcCcHHHHHHHHC
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS---PNEFPRIGSTSVLLWLAR 711 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 711 (958)
..+..+.+++++.+|..+++++++|++. +++.|+||++||+........+..... ...|......++..|+++
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~ 158 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL----KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKE 158 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC----CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC----CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHC
Confidence 4456788999999999999999999763 345999999999643211100000000 000110011457789999
Q ss_pred CcEEEEcCCCCCCCCCCcccc--------hh--------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 002164 712 GFAILGGPTTPIIGEGDEEAN--------DR--------------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~--------~~--------------~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~G 769 (958)
||+|+++|+ +|+|.+... .. +....+.|+.++++||.+++.+|++||+|+|+|||
T Consensus 159 G~~Vl~~D~---rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~G 235 (391)
T 3g8y_A 159 GYVAVAVDN---AAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLG 235 (391)
T ss_dssp TCEEEECCC---TTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGG
T ss_pred CCEEEEecC---CCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChh
Confidence 999999555 455544321 11 11233589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 770 AFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
|++|+.+++.. ++++++|+.++++.
T Consensus 236 G~~al~~a~~~-~~i~a~v~~~~~~~ 260 (391)
T 3g8y_A 236 TEPMMVLGVLD-KDIYAFVYNDFLCQ 260 (391)
T ss_dssp HHHHHHHHHHC-TTCCEEEEESCBCC
T ss_pred HHHHHHHHHcC-CceeEEEEccCCCC
Confidence 99999999887 57999998877654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=172.90 Aligned_cols=307 Identities=9% Similarity=0.102 Sum_probs=179.2
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC
Q 002164 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (958)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~ 186 (958)
..+.+..++|||||+.++++... .+......+.++.|.+|++.... ..+.+....
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~----------------------~g~~~~~~~~d~~v~iw~~~~~~---~~~~~~~~~ 65 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTV----------------------SGTVDANFSTDSSLELWSLLAAD---SEKPIASLQ 65 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCB----------------------SSCCCSSCCCCCCCEEEESSSGG---GCSCSCCCC
T ss_pred hhhhcceEeeCCCCCCEEEEEec----------------------CcccccccCCCCeEEEEEccCCC---CCcEEEEEe
Confidence 34467889999999955444421 01000001112478999985411 111222222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----C-ceeeccCCCCccccccccceEEecC-CeEEEE
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----G-KARPLFQSPDIYLNAIFDNFVWVNN-STLLVC 260 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----g-~~~~lt~~~~~~~~~~~~~~~wspD-G~~l~~ 260 (958)
....+..+.|+|||+.|+.... ...|.+|++.+ . ....+...... +..++|+|| ++.|+.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~---------dg~v~vw~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALD---------NGSLELYSTNEANNAINSMARFSNHSSS-----VKTVKFNAKQDNVLAS 131 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEES---------SSCEEEECCSSTTSCCCEEEECCCSSSC-----CCEEEECSSSTTBEEE
T ss_pred cCCceEEEEECCCCCeEEEEcc---------CCeEEEeecccccccccchhhccCCccc-----eEEEEEcCCCCCEEEE
Confidence 3457899999999999988652 45778888876 2 23333332222 778999998 777776
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-------eeec---C
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-------VKEI---G 329 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-------~~~l---~ 329 (958)
.. ....|.++++ +++ ...+ .
T Consensus 132 ~~-------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 132 GG-------------------------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EC-------------------------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred Ec-------------------------------------------------CCCeEEEEECCCCcccccccccccccccc
Confidence 51 1234666666 443 1111 1
Q ss_pred CC-ccccccccCCCC-cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee
Q 002164 330 PP-AVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 330 ~~-~~~~~~~~SpDG-k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
.. ..+..++|+||| +.|+.... ++.|.+||+.++............ .+....+..+.|+
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGS-------------SNFASIWDLKAKKEVIHLSYTSPN------SGIKQQLSVVEWH 223 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESS-------------SSCEEEEETTTTEEEEEECCCCCS------SCCCCCEEEEEEC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcC-------------CCCEEEEECCCCCcceEEeccccc------cccCCceEEEEEC
Confidence 22 667889999995 55555442 348999999866543322211100 0001345789999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEE-eeccccCceeeec-CCceEEEEEeccccceEEE
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILH-KLDLRYGGISWCD-DSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~-~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~ 484 (958)
|||..+++.... + +....|++|++ ..+.. ...+. .+...+..+.|+| +++.|+.....+ .|.
T Consensus 224 ~~~~~~l~~~~~-d--------~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg----~v~ 288 (416)
T 2pm9_A 224 PKNSTRVATATG-S--------DNDPSILIWDL--RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN----TVL 288 (416)
T ss_dssp SSCTTEEEEEEC-C--------SSSCCCCEEET--TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS----EEE
T ss_pred CCCCCEEEEEEC-C--------CCCceEEEEeC--CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC----CEE
Confidence 999766654211 0 01126888886 22222 33344 4566778899999 888887765433 466
Q ss_pred EEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCC-ceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTG-TYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
++++.++ +...........+.. ++|+||| +.|+.... ...|.+||+.+++
T Consensus 289 ~wd~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~~---------------------d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 289 LWNPESA--EQLSQFPARGNWCFK------TKFAPEAPDLFACASF---------------------DNKIEVQTLQNLT 339 (416)
T ss_dssp EECSSSC--CEEEEEECSSSCCCC------EEECTTCTTEEEECCS---------------------SSEEEEEESCCCC
T ss_pred EeeCCCC--ccceeecCCCCceEE------EEECCCCCCEEEEEec---------------------CCcEEEEEccCCC
Confidence 6777664 333334443344443 8899999 56655442 1258888887665
Q ss_pred e
Q 002164 564 K 564 (958)
Q Consensus 564 ~ 564 (958)
.
T Consensus 340 ~ 340 (416)
T 2pm9_A 340 N 340 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=165.87 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=145.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+||||+ +|+... ....|.+||+++++...............+..++|+|||++|+...
T Consensus 84 ~v~~~~~s~d~-~l~~~s---------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------- 146 (344)
T 4gqb_B 84 GVADLTWVGER-GILVAS---------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------- 146 (344)
T ss_dssp CEEEEEEETTT-EEEEEE---------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------
T ss_pred CEEEEEEeCCC-eEEEEE---------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------
Confidence 57889999996 566543 2557888898887643322110000111277899999999999762
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +|+.. .+..+ ..+..++|+||++.+
T Consensus 147 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 147 ------------------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 1234777888 77543 44444 778899999999876
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+++... ++.|.+||+..++. ..+.... . ...+..+.|+|++..++..
T Consensus 185 l~s~s~------------D~~v~iwd~~~~~~~~~~~~~~-~----------~~~~~~~~~~p~~~~~l~s--------- 232 (344)
T 4gqb_B 185 FLSCSE------------DNRILLWDTRCPKPASQIGCSA-P----------GYLPTSLAWHPQQSEVFVF--------- 232 (344)
T ss_dssp EEEEET------------TSCEEEEETTSSSCEEECC---------------CCCEEEEEECSSCTTEEEE---------
T ss_pred eeeecc------------ccccccccccccceeeeeecce-e----------eccceeeeecCCCCcceEE---------
Confidence 555432 34899999985543 3332211 0 0234578999987776553
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
.+..+.|.+||+ ..+.....+..+...+..++|||||..++++...++ .|.++|+.++ + ......+...
T Consensus 233 ---g~~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~--~-~~~~~~H~~~ 301 (344)
T 4gqb_B 233 ---GDENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC---SLAVLDSSLS--E-LFRSQAHRDF 301 (344)
T ss_dssp ---EETTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTCC--E-EEEECCCSSC
T ss_pred ---eccCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC---eEEEEECCCC--c-EEEEcCCCCC
Confidence 134567899996 345556667777778889999999965444433332 2555576663 2 2333444444
Q ss_pred ccCCCCCCceEeccCCceEEEEe
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.. ++|||||+.|+...
T Consensus 302 V~~------v~~sp~~~~llas~ 318 (344)
T 4gqb_B 302 VRD------ATWSPLNHSLLTTV 318 (344)
T ss_dssp EEE------EEECSSSTTEEEEE
T ss_pred EEE------EEEeCCCCeEEEEE
Confidence 554 88999998776543
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-16 Score=162.59 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=131.5
Q ss_pred EEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002164 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (958)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~ 733 (958)
+.+|+|.+...+ .++.|+||++||+.... ......+..|+++||.|+.+++++ .+.
T Consensus 34 ~~~~~p~~~~~~-g~~~p~vv~~HG~~~~~---------------~~~~~~~~~l~~~G~~v~~~d~~~---s~~----- 89 (258)
T 2fx5_A 34 CRIYRPRDLGQG-GVRHPVILWGNGTGAGP---------------STYAGLLSHWASHGFVVAAAETSN---AGT----- 89 (258)
T ss_dssp EEEEEESSTTGG-GCCEEEEEEECCTTCCG---------------GGGHHHHHHHHHHTCEEEEECCSC---CTT-----
T ss_pred EEEEeCCCCccc-CCCceEEEEECCCCCCc---------------hhHHHHHHHHHhCCeEEEEecCCC---Ccc-----
Confidence 788899752211 12589999999964211 112345667889999999977652 111
Q ss_pred hhHHHHHHHHHHHHHHHHHc---------CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcc
Q 002164 734 RFVEQLVACAEAAVEEVVRR---------GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQ 804 (958)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~---------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~ 804 (958)
..|+..+++++.+. ..+|.++++++||||||.+++.++ .+++++++++.+|.....
T Consensus 90 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~------- 154 (258)
T 2fx5_A 90 ------GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL------- 154 (258)
T ss_dssp ------SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST-------
T ss_pred ------HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc-------
Confidence 12344455555542 245778999999999999999887 446899999988753210
Q ss_pred cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002164 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (958)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~ 883 (958)
. .....+.++++|+|++||++|..+| +.. +.++++. .+.+++++++++++|.+.. +..
T Consensus 155 -----~----------~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~ 213 (258)
T 2fx5_A 155 -----G----------HDSASQRRQQGPMFLMSGGGDTIAF--PYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSG 213 (258)
T ss_dssp -----T----------CCGGGGGCCSSCEEEEEETTCSSSC--HHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTC
T ss_pred -----c----------cchhhhccCCCCEEEEEcCCCcccC--chhhHHHHHhc---cCCCeEEEEECCCCCcccc-chH
Confidence 0 0112355678999999999999998 775 7777766 4467999999999999753 333
Q ss_pred HHHHHHHHHHHHHhhccC
Q 002164 884 MHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 884 ~~~~~~i~~fl~~~l~~~ 901 (958)
..+.+.+.+||++++...
T Consensus 214 ~~~~~~i~~fl~~~l~~~ 231 (258)
T 2fx5_A 214 GAYRGPSTAWFRFQLMDD 231 (258)
T ss_dssp GGGHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 567888999999888643
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=152.79 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=123.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|+||++||.... ...+ ........|+++||.|+. .+.+|+|.+.... ......+++.+++++
T Consensus 4 ~~~vv~~HG~~~~-----------~~~~--~~~~~~~~l~~~g~~v~~---~d~~g~g~s~~~~-~~~~~~~~~~~~~~~ 66 (176)
T 2qjw_A 4 RGHCILAHGFESG-----------PDAL--KVTALAEVAERLGWTHER---PDFTDLDARRDLG-QLGDVRGRLQRLLEI 66 (176)
T ss_dssp SCEEEEECCTTCC-----------TTSH--HHHHHHHHHHHTTCEEEC---CCCHHHHTCGGGC-TTCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCC-----------ccHH--HHHHHHHHHHHCCCEEEE---eCCCCCCCCCCCC-CCCCHHHHHHHHHHH
Confidence 6899999996311 1111 112456678889999999 4555666654321 112234455566667
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 829 (958)
+.+.. +.++++++|||+||.+++.++.+.| ++++|+.+|..+.... ....++
T Consensus 67 ~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~------------------------~~~~~~ 118 (176)
T 2qjw_A 67 ARAAT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL------------------------PALDAA 118 (176)
T ss_dssp HHHHH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB------------------------CCCCCC
T ss_pred HHhcC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc------------------------Cccccc
Confidence 76653 3479999999999999999999987 9999999887542110 004567
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++|+|++||++|..+| +..+.++++.+ +++++++ +++|.+ .+...++.+.+.+||++
T Consensus 119 ~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 119 AVPISIVHAWHDELIP--AADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp SSCEEEEEETTCSSSC--HHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCccC--HHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 8999999999999999 89999998887 3588888 889998 35667777788888764
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=167.94 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCc
Q 002164 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (958)
Q Consensus 743 ~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (958)
+.+++..+.++ + ++++++|||+||.+++.++.++|++++++|+++|... ..+
T Consensus 186 ~~~~l~~l~~~--~--~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------------~~~ 237 (328)
T 1qlw_A 186 TVANLSKLAIK--L--DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------------PKP 237 (328)
T ss_dssp HHHHHHHHHHH--H--TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------------CCG
T ss_pred HHHHHHHHHHH--h--CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------------CCH
Confidence 34444555443 1 2899999999999999999999999999999987531 001
Q ss_pred ccccCCCCCCEEEEeeCCCCCCCCCh-----HHHHHHHHHHHhCCCcEEEEEeCCCC-----ccCCCcccHHHHHHHHHH
Q 002164 823 FMSANKLKKPILLVHGEEDNNSGTLT-----MQSDRFFNALKGHGALCRLVILPFES-----HGYAARESIMHVLWETDR 892 (958)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~-----~~~~~~~~~l~~~g~~~~~~~~p~~~-----H~~~~~~~~~~~~~~i~~ 892 (958)
......+++|+|++||++|..+| + +.++++++.++..|.+++++++|++| |.+....+..++.+.+.+
T Consensus 238 ~~~~~~~~~PvLii~G~~D~~~p--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~ 315 (328)
T 1qlw_A 238 EDVKPLTSIPVLVVFGDHIEEFP--RWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILD 315 (328)
T ss_dssp GGCGGGTTSCEEEEECSSCTTCT--TTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEeccCCcccc--chhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHH
Confidence 11122356899999999999998 7 88999999999999999999999555 988655557888999999
Q ss_pred HHHHhhc
Q 002164 893 WLQKYCV 899 (958)
Q Consensus 893 fl~~~l~ 899 (958)
||++++.
T Consensus 316 fl~~~~~ 322 (328)
T 1qlw_A 316 WIGRNTA 322 (328)
T ss_dssp HHHHTCC
T ss_pred HHHhccc
Confidence 9998864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=162.83 Aligned_cols=240 Identities=11% Similarity=0.063 Sum_probs=163.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~~ 189 (958)
+..++|||||++|+++... + +.|++|++.+ ++. +.+. .+.
T Consensus 34 ~~~~~~s~dg~~l~~~~~~----------------------d----------~~i~v~d~~~----~~~~~~~~---~~~ 74 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAH----------------------S----------NDVSIIDTAT----NNVIATVP---AGS 74 (391)
T ss_dssp EEEEEECTTSSEEEEEEGG----------------------G----------TEEEEEETTT----TEEEEEEE---CSS
T ss_pred cceEEECCCCCEEEEECCC----------------------C----------CeEEEEECCC----CeEEEEEE---CCC
Confidence 4578999999999776532 1 3789999854 332 2332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..++|||||++|+++.. ....|+++|+.+++.......... +..++|+|||+.|+++..
T Consensus 75 ~v~~~~~spdg~~l~~~~~--------~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~------ 135 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNM--------ASSTLSVIDTTSNTVAGTVKTGKS-----PLGLALSPDGKKLYVTNN------ 135 (391)
T ss_dssp SEEEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEET------
T ss_pred CccceEECCCCCEEEEEEC--------CCCEEEEEECCCCeEEEEEeCCCC-----cceEEECCCCCEEEEEeC------
Confidence 6888999999999988642 246899999999887666544432 668999999998876610
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-CccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDGk~l~ 347 (958)
....|+++++ +++...... +.....++|+|||++|+
T Consensus 136 ------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 136 ------------------------------------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173 (391)
T ss_dssp ------------------------------------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred ------------------------------------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEE
Confidence 2346888998 775544333 35567889999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
++... .+.+++||+.++......... ..+..+.|+|||+.+++....
T Consensus 174 ~~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~-------- 220 (391)
T 1l0q_A 174 VANFD------------SMSISVIDTVTNSVIDTVKVE-------------AAPSGIAVNPEGTKAYVTNVD-------- 220 (391)
T ss_dssp EEETT------------TTEEEEEETTTTEEEEEEECS-------------SEEEEEEECTTSSEEEEEEEC--------
T ss_pred EEeCC------------CCEEEEEECCCCeEEEEEecC-------------CCccceEECCCCCEEEEEecC--------
Confidence 77533 348999999876654433211 234678999999988874210
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.|++|++ .+++.............+.|+|||+.|+++...+ ..|+++++.++
T Consensus 221 --~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 221 --KYFNTVSMIDT---GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp --SSCCEEEEEET---TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred --cCCCcEEEEEC---CCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 13567999996 4443333333333456789999999998775444 35777787764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=179.15 Aligned_cols=309 Identities=9% Similarity=-0.059 Sum_probs=187.3
Q ss_pred CCCCceecCCCCEEEEEecCCC----CCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccC
Q 002164 110 PLPALSFSPQRDKILFLKRRAL----PPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~ 185 (958)
.+..++|||||+.+|..+.+.. .....+.++...+..+.+.|++. ..+|++.. + .....++ +
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~----------~~~~~~~~-~--~~~~~~~-~ 82 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEF----------ENKLDFEL-A--QQNGLLN-S 82 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCC----------CCTTTTSC-C--CSSCSST-T
T ss_pred cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCC----------cceEEEEe-C--CCceEee-c
Confidence 5789999999999999877611 11123344555566677777651 12222321 1 1111222 2
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCC
Q 002164 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
.....+...+|||||++||.... ...+.+|+.++ ....+. ....-....+..++|||||+.|+...
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~---------dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--- 148 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSN---------NGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--- 148 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEET---------TSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE---
T ss_pred CCCCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc---
Confidence 22347999999999999998663 55677778554 222232 12100011267899999999999872
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--------eeec----CCC-
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEI----GPP- 331 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--------~~~l----~~~- 331 (958)
..++|-++++ ++. ...+ ...
T Consensus 149 ----------------------------------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~ 182 (588)
T 2j04_A 149 ----------------------------------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK 182 (588)
T ss_dssp ----------------------------------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred ----------------------------------------------CCCEEEEEECCCCccccccceeeeeeeccccccc
Confidence 1244666666 553 2333 222
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE----EeccCCccccCcccccccccCcceeeee
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR----ELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~----~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
..+..++||||| |+..+. ++.+++|+++++... .+... ....+..++|+
T Consensus 183 ~~V~sVawSPdg--Laass~-------------D~tVrlWd~~~~~~~~~~~tL~~~------------h~~~V~svaFs 235 (588)
T 2j04_A 183 DWVTHIVWYEDV--LVAALS-------------NNSVFSMTVSASSHQPVSRMIQNA------------SRRKITDLKIV 235 (588)
T ss_dssp CCEEEEEEETTE--EEEEET-------------TCCEEEECCCSSSSCCCEEEEECC------------CSSCCCCEEEE
T ss_pred ccEEEEEEcCCc--EEEEeC-------------CCeEEEEECCCCccccceeeeccc------------ccCcEEEEEEE
Confidence 578899999999 555543 348999999876532 23211 11346789999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceee--ecCCceEEEEEeccccceEEE
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISW--CDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~l~ 484 (958)
|+.|+.. ..+.|.+|+. .+++...+. .+...+..++| ||||+.|+.+.+.+ .+||
T Consensus 236 --g~~LASa--------------~~~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG---~klw 293 (588)
T 2j04_A 236 --DYKVVLT--------------CPGYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS---YKVL 293 (588)
T ss_dssp --TTEEEEE--------------CSSEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE---EEEE
T ss_pred --CCEEEEE--------------eCCeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC---CEEE
Confidence 5666652 2468999995 655553443 55666788999 99998877664332 2688
Q ss_pred EEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCce
Q 002164 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~ 564 (958)
.++ . ++++|||..+++.. ..+++|+..++..
T Consensus 294 ~~d--~------------------------~~~spd~~l~a~~d-----------------------~~v~lW~~~g~~l 324 (588)
T 2j04_A 294 LED--E------------------------LHVTADNIIAPYLE-----------------------KKFKKWSTIWNEF 324 (588)
T ss_dssp ESS--S------------------------EEEECCCSSHHHHH-----------------------HHHHHTTTTTTSS
T ss_pred eec--c------------------------EEECCCceEEEEcC-----------------------CEEEEEECCCCce
Confidence 765 0 56899998777642 1467777765543
Q ss_pred EEEecCCcccccceeEeecCCCccccccccCCEEEEEEe
Q 002164 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
..+ .+.. .+. ..+|||||+.++....
T Consensus 325 ~~~-~~~~-----~I~-------~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 325 NNY-ETTL-----VIH-------GISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSS-CCEE-----EEE-------EEEECTTSSEEEEEEE
T ss_pred eee-ccce-----EEE-------EEEECCCCCEEEEEEe
Confidence 211 1111 011 3579999987765444
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=160.45 Aligned_cols=213 Identities=14% Similarity=0.156 Sum_probs=135.7
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
++.+.||.+++...+- . .|.||++||.+.... .| ......|+++||.|++ +|
T Consensus 2 ~~~~~~g~~l~y~~~G--------~--g~~vvllHG~~~~~~-----------~w----~~~~~~l~~~g~~vi~---~D 53 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWG--------S--GKPVLFSHGWLLDAD-----------MW----EYQMEYLSSRGYRTIA---FD 53 (271)
T ss_dssp EEECTTSCEEEEEEES--------S--SSEEEEECCTTCCGG-----------GG----HHHHHHHHTTTCEEEE---EC
T ss_pred eEEcCCCCEEEEEccC--------C--CCeEEEECCCCCcHH-----------HH----HHHHHHHHhCCceEEE---ec
Confidence 3667799998766652 1 245788999642211 11 1345567889999999 66
Q ss_pred CCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEeccCCCCCC-
Q 002164 723 IIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTL- 798 (958)
Q Consensus 723 ~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~- 798 (958)
.+|+|.+..+ ........+|+.+.++.+ +.+++.|+||||||.+++.++++ .|++++++|++++......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 127 (271)
T 3ia2_A 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBC
T ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccC
Confidence 6688877543 223456677777777665 33689999999999866665554 5889999999876432110
Q ss_pred ---CCCCcccc-----cch---------------hh-----------------h-----c-------HHHHHhcCccccc
Q 002164 799 ---TPFGFQNE-----DRT---------------LW-----------------E-----A-------TSTYVEMSPFMSA 826 (958)
Q Consensus 799 ---~~~~~~~~-----~~~---------------~~-----------------~-----~-------~~~~~~~sp~~~~ 826 (958)
.+...... ... .+ . . ...+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T 3ia2_A 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccc
Confidence 00000000 000 00 0 0 0001111222345
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.++++|+|++||++|..+| ++.+.++++.+.. ..++.++|++||.+. .+....+.+.+.+||.
T Consensus 208 ~~i~~P~Lvi~G~~D~~~p--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcCC--hHHHHHHHHHhCC---CceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 7899999999999999998 7775555554422 368999999999874 5667788888888875
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=170.76 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=129.3
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc----------------
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---------------- 731 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~---------------- 731 (958)
+++|+||++||+... ... ....+..|+++||+|+++++++ +|.+..
T Consensus 96 ~~~P~Vv~~HG~~~~-----------~~~----~~~~a~~La~~Gy~V~~~d~~g---~g~s~~~~~~~~~~~~~~~~~~ 157 (383)
T 3d59_A 96 EKYPLVVFSHGLGAF-----------RTL----YSAIGIDLASHGFIVAAVEHRD---RSASATYYFKDQSAAEIGDKSW 157 (383)
T ss_dssp SCEEEEEEECCTTCC-----------TTT----THHHHHHHHHTTCEEEEECCCS---SCSSEEEECSSHHHHHHTCCEE
T ss_pred CCCCEEEEcCCCCCC-----------chH----HHHHHHHHHhCceEEEEeccCC---CCccceeecCCccccccCCcee
Confidence 369999999996421 111 2356778999999999966654 333210
Q ss_pred --------ch------hhHHHHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEeChHHHHHHHHH
Q 002164 732 --------ND------RFVEQLVACAEAAVEEVVR--------------------RGVAHPSKIAVGGHSYGAFMTANLL 777 (958)
Q Consensus 732 --------~~------~~~~~~~~D~~~av~~l~~--------------------~~~~d~~~i~l~G~S~GG~~a~~~a 777 (958)
.. .......+|+..+++++.+ ...+|.+||+++|||+||.+++.++
T Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 237 (383)
T 3d59_A 158 LYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTL 237 (383)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHH
Confidence 00 1122346899999999976 4567888999999999999999999
Q ss_pred HhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 778 ~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
.+.+ +|+++|+.+|... +. . .....++++|+|++||++|..+ ... +..++
T Consensus 238 ~~~~-~v~a~v~~~~~~~----p~----------~----------~~~~~~i~~P~Lii~g~~D~~~----~~~-~~~~~ 287 (383)
T 3d59_A 238 SEDQ-RFRCGIALDAWMF----PL----------G----------DEVYSRIPQPLFFINSEYFQYP----ANI-IKMKK 287 (383)
T ss_dssp HHCT-TCCEEEEESCCCT----TC----------C----------GGGGGSCCSCEEEEEETTTCCH----HHH-HHHHT
T ss_pred hhCC-CccEEEEeCCccC----CC----------c----------hhhhccCCCCEEEEecccccch----hhH-HHHHH
Confidence 8885 6999999887421 00 0 0122467899999999999753 332 33466
Q ss_pred HHhCCCcEEEEEeCCCCccCCC---------------------cccH-HHHHHHHHHHHHHhhccC
Q 002164 858 LKGHGALCRLVILPFESHGYAA---------------------RESI-MHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~~---------------------~~~~-~~~~~~i~~fl~~~l~~~ 901 (958)
+...+.+++++++++++|.+.. .+.. ..+.+.+++||+++|+..
T Consensus 288 l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 288 CYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 6667789999999999998621 1111 233456999999999754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=159.81 Aligned_cols=263 Identities=10% Similarity=0.074 Sum_probs=172.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|||||++|+..+.+ +.|.+|++.. + .....+.. ...
T Consensus 57 ~v~~~~~s~d~~~l~s~s~D---------------------------------g~v~iWd~~~-~--~~~~~~~~--~~~ 98 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQD---------------------------------GKLIIWDSYT-T--NKVHAIPL--RSS 98 (340)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------TEEEEEETTT-C--CEEEEEEC--SSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CcEEEEECCC-C--CcceEeec--CCc
Confidence 46688999999999988875 4799999854 2 22333432 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+...+|+|||+.|+.... ...+.+|++.+++. +.+..... .+..+.|+++++.+...
T Consensus 99 ~v~~~~~s~~~~~l~s~~~---------d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~l~s~s--- 161 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL---------DNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQIVTSS--- 161 (340)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTEEEEEE---
T ss_pred cEEEEEECCCCCEEEEEeC---------CCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCcEEEEE---
Confidence 6888999999999988552 56788888876531 12222222 26678899999744322
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSP 341 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~Sp 341 (958)
....|.++++ +++.. .+... ..+..++|+|
T Consensus 162 -----------------------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 162 -----------------------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp -----------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred -----------------------------------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 2345778888 77543 44444 6788999999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
||+.|+..+.+ +.+.+||+..+.. ..+..+. ..+..+.|+|||+.++..
T Consensus 195 ~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~~~h~-------------~~v~~v~~~p~~~~l~s~---- 244 (340)
T 1got_B 195 DTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGHE-------------SDINAICFFPNGNAFATG---- 244 (340)
T ss_dssp TSSEEEEEETT-------------SCEEEEETTTCSEEEEECCCS-------------SCEEEEEECTTSSEEEEE----
T ss_pred CCCEEEEEeCC-------------CcEEEEECCCCeeEEEEcCCc-------------CCEEEEEEcCCCCEEEEE----
Confidence 99988877633 4899999985543 3333221 345789999999987763
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEEeec---cccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
+..+.|.+||+ ..++........ ..+..+.|+|||+.|+.....+ .|.+++...+ +...
T Consensus 245 ---------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~~--~~~~ 306 (340)
T 1got_B 245 ---------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA--DRAG 306 (340)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEE
T ss_pred ---------cCCCcEEEEEC---CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC----eEEEEEcccC--cEee
Confidence 44567899996 333222111111 2456789999999988775443 3555565553 2333
Q ss_pred EeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
........+.. +.|+|||++|+...
T Consensus 307 ~~~~h~~~v~~------~~~s~dg~~l~s~s 331 (340)
T 1got_B 307 VLAGHDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp EEECCSSCEEE------EEECTTSSCEEEEE
T ss_pred EeecCCCcEEE------EEEcCCCCEEEEEc
Confidence 33444444443 78999999988776
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-15 Score=161.84 Aligned_cols=284 Identities=12% Similarity=0.047 Sum_probs=156.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
+|++|.+.... +....++..........++|||||+ |+++... .+...|+++++++|+.+.+...... .
T Consensus 17 ~i~v~~~d~~t--g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~------~~~~~v~~~~~~~g~~~~~~~~~~~--~ 85 (347)
T 3hfq_A 17 GIYQGTLDTTA--KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE------DDEGGIAAWQIDGQTAHKLNTVVAP--G 85 (347)
T ss_dssp EEEEEEEETTT--TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE------TTEEEEEEEEEETTEEEEEEEEEEE--S
T ss_pred CEEEEEEcCCC--CeEEEeeeeeccCCcceEEEccCCe-EEEEEec------CCCceEEEEEecCCcEEEeeeeecC--C
Confidence 56666663321 4443333222233577799999999 6665531 2356899999988876665431110 0
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-- 321 (958)
.....++|+|||+.|+++.. ....+.++++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~------------------------------------------------~~~~v~v~~~~~ 117 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANY------------------------------------------------HKGTAEVMKIAA 117 (347)
T ss_dssp CCCSEEEEETTTTEEEEEET------------------------------------------------TTTEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEeC------------------------------------------------CCCEEEEEEeCC
Confidence 01557899999999987721 0122334443
Q ss_pred CCeeeecCC---C----------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCcc
Q 002164 322 DGTVKEIGP---P----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA 387 (958)
Q Consensus 322 ~g~~~~l~~---~----------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~ 387 (958)
+|..+.+.. . ..+..++|||||+ +++.... .+.+++|+++ ++....+......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG------------SDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT------------TTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC------------CCEEEEEEECCCCcEEEeeeEEcC
Confidence 343332211 0 1245689999999 6555422 3489999998 5544433221111
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee---c------ccc
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRY 458 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~------~~~ 458 (958)
. ..++..++|+|||+.+++.. ...+.+++++++ ..+++.+.+... . ...
T Consensus 185 ~---------g~~p~~~~~spdg~~l~v~~------------~~~~~v~v~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 185 A---------GFGPRHLVFSPDGQYAFLAG------------ELSSQIASLKYD-TQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp T---------TCCEEEEEECTTSSEEEEEE------------TTTTEEEEEEEE-TTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred C---------CCCCceEEECCCCCEEEEEe------------CCCCEEEEEEec-CCCCceEEeeeeeecCCCCCCCCcc
Confidence 0 02456789999999877631 223456666641 123443333221 1 124
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC--ccccCCCCCCceEeccCCceEEEEeeeccCCCc
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 536 (958)
..++|||||++|+++...++ ...+|.++.++ ....+..... .... .++|||||++|+.....
T Consensus 243 ~~i~~spdG~~l~v~~~~~~-~v~v~~~~~~g---~~~~~~~~~~~~~~~~------~~~~spdg~~l~v~~~~------ 306 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYN-TLAVFAVTADG---HLTLIQQISTEGDFPR------DFDLDPTEAFVVVVNQN------ 306 (347)
T ss_dssp EEEEECTTSCEEEEEEETTT-EEEEEEECGGG---CEEEEEEEECSSSCCC------EEEECTTSSEEEEEETT------
T ss_pred eeEEECCCCCEEEEEeCCCC-EEEEEEECCCC---cEEEeEEEecCCCCcC------eEEECCCCCEEEEEEcC------
Confidence 45899999999877654432 24556555332 2222211111 1111 17899999998877521
Q ss_pred EEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.+.-.+|.+|.++|+.+.+..
T Consensus 307 ------------~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 307 ------------TDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp ------------TTEEEEEEECTTTCCEEEEEE
T ss_pred ------------CCcEEEEEEeCCCCeEEeccc
Confidence 011134444777888776643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=185.58 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=178.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.+|++.+ + .....+.+ +..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d---------------------------------~~i~vw~~~~-~--~~~~~~~~--h~~ 658 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGAD---------------------------------KTLQVFKAET-G--EKLLDIKA--HED 658 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred cEEEEEECCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEecc--CCC
Confidence 45678999999999988765 4789999854 2 23444543 335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe--EEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST--LLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~--~l~~~~~~~~~ 267 (958)
.+...+|||||++|+.... ...|.+||+.+++........... +..++|+|+++ .++...
T Consensus 659 ~v~~~~~s~~~~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~sg~----- 720 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSA---------DKKVKIWDSATGKLVHTYDEHSEQ----VNCCHFTNKSNHLLLATGS----- 720 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSCCEEEEEE-----
T ss_pred CEEEEEEecCCCEEEEEeC---------CCeEEEEECCCCceEEEEcCCCCc----EEEEEEecCCCceEEEEEe-----
Confidence 7899999999999998652 567999999988766544333332 77899999653 444331
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk 344 (958)
....|.++++ +++. ..+... ..+..++|+|||+
T Consensus 721 --------------------------------------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 721 --------------------------------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp --------------------------------------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred --------------------------------------------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 2245778888 6643 344444 7788999999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
.|+..+.+ +.+.+||+.++.. ..+...................+..+.|+|||+.++..
T Consensus 757 ~l~s~s~d-------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------- 816 (1249)
T 3sfz_A 757 LLASCSAD-------------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA------- 816 (1249)
T ss_dssp EEEEEESS-------------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-------
T ss_pred EEEEEECC-------------CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE-------
Confidence 99888743 4899999985543 33322111000000001111245678999999988873
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
..+.+++|+. ..++....+. .....+..+.|+|+|+.++.....+. +.+++..++ .........
T Consensus 817 -------~~~~v~~~d~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~----v~vwd~~~~--~~~~~~~~h 881 (1249)
T 3sfz_A 817 -------AKNKVLLFDI--HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC----VELWNIDSR--LKVADCRGH 881 (1249)
T ss_dssp -------ETTEEEEEET--TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC----EEEEETTTT--EEEEEECCC
T ss_pred -------cCCcEEEEEe--cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe----EEEEEcCCC--ceeeecCCC
Confidence 2457889986 2333333332 44566788999999999887754432 444555553 223333333
Q ss_pred CccccCCCCCCceEeccCCceEEEEe
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...+.. +.|+|||++++...
T Consensus 882 ~~~v~~------v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 882 LSWVHG------VMFSPDGSSFLTAS 901 (1249)
T ss_dssp SSCEEE------EEECTTSSEEEEEE
T ss_pred ccceEE------EEECCCCCEEEEEe
Confidence 333433 77899998887765
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=158.45 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=137.8
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.+|.+++...+-|++ .|.||++||.+... ..| ...+..|+++||.|++ .|.
T Consensus 3 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~~-----------~~w----~~~~~~l~~~g~~vi~---~D~ 56 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLSA-----------DDW----DNQMLFFLSHGYRVIA---HDR 56 (275)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEEcCCCC--------CceEEEECCCCCch-----------hhH----HHHHHHHHHCCceEEE---EcC
Confidence 566789888876664421 36789999964211 111 2345678889999999 666
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCC--
Q 002164 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (958)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (958)
+|+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 57 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 130 (275)
T 1a88_A 57 RGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKS 130 (275)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCB
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccC
Confidence 7888775431 23556677887777765 235899999999999999877776 899999999886421100
Q ss_pred --CCCCcc----------------------------c-c--c----c----hhhhc-----H-------HHHHhcCcccc
Q 002164 799 --TPFGFQ----------------------------N-E--D----R----TLWEA-----T-------STYVEMSPFMS 825 (958)
Q Consensus 799 --~~~~~~----------------------------~-~--~----~----~~~~~-----~-------~~~~~~sp~~~ 825 (958)
.+.... . . . . ..|.. . ..+...+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (275)
T 1a88_A 131 DTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDD 210 (275)
T ss_dssp TTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccCcccCCHHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccc
Confidence 000000 0 0 0 0 00000 0 00111122234
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.++++|+|+++|++|..+| +....+.++.+. ..+++++++++||.+. .++...+.+.+.+||.
T Consensus 211 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 211 LKRIDVPVLVAHGTDDQVVP--YADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCCccCC--cHHHHHHHHhhC---CCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 56789999999999999998 765544443332 2479999999999874 4567788888999985
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-14 Score=154.14 Aligned_cols=296 Identities=8% Similarity=-0.021 Sum_probs=175.2
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
+.|++++++++.+.. ....|+++|+++++.......+... . .++|+|||+.|+++..
T Consensus 3 ~~~~~~~~~~~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~----~-~~~~s~dg~~l~~~~~---------- 59 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ--------HLRRISFFSTDTLEILNQITLGYDF----V-DTAITSDCSNVVVTSD---------- 59 (331)
T ss_dssp ----CCCCEEEEEEG--------GGTEEEEEETTTCCEEEEEECCCCE----E-EEEECSSSCEEEEEES----------
T ss_pred eeEcCCCCEEEEEec--------CCCeEEEEeCcccceeeeEEccCCc----c-eEEEcCCCCEEEEEeC----------
Confidence 467788877666542 3568999999999886665544322 4 8899999998887611
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee--eecCCCccccc-cccCCCCcEEEEE
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPPAVYTS-LDPSPDEKYILIS 349 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~l~~~~~~~~-~~~SpDGk~l~~~ 349 (958)
....|+++++ +++. +.+..+..... ++|||||++|+ .
T Consensus 60 --------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~ 100 (331)
T 3u4y_A 60 --------------------------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-T 100 (331)
T ss_dssp --------------------------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-E
T ss_pred --------------------------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-E
Confidence 2346999999 7763 34444444455 89999999999 4
Q ss_pred eecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 429 (958)
..... ....|++||+++++........ ..+..+.|+|||+.+++.. .
T Consensus 101 ~~~~~---------~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~~-~---------- 147 (331)
T 3u4y_A 101 VTGLN---------HPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNGLILID-R---------- 147 (331)
T ss_dssp CCCSS---------SSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSCEEEEE-E----------
T ss_pred ecCCC---------CcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCEEEEEe-c----------
Confidence 42210 1128999999876654432211 2346899999999877641 1
Q ss_pred ccCCe-EEEEeCCCCCCCCceEE----EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc-EEEeccCC
Q 002164 430 TPRDI-IYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-RILFDRSS 503 (958)
Q Consensus 430 ~~~~~-l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 503 (958)
..+. +++|+++ ..+..... .........+.|+|||++|++....+ ..|+++++.++.... .......
T Consensus 148 -~~~~~i~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~d~~~~~~~~~~~~~~~~- 220 (331)
T 3u4y_A 148 -SSANTVRRFKID--ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG---NSIGILETQNPENITLLNAVGTN- 220 (331)
T ss_dssp -TTTTEEEEEEEC--TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT---TEEEEEECSSTTSCEEEEEEECS-
T ss_pred -CCCceEEEEEEC--CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC---CeEEEEECCCCcccceeeeccCC-
Confidence 1234 6777751 22232111 12223346689999999988776443 357778877652200 2222211
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeec
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~ 583 (958)
.... .+.|+|||++|+..... ...|++||+++++.+.+.......... ....
T Consensus 221 ~~~~------~~~~spdg~~l~v~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~ 272 (331)
T 3u4y_A 221 NLPG------TIVVSRDGSTVYVLTES--------------------TVDVFNFNQLSGTLSFVKSFGHGLLID--PRPL 272 (331)
T ss_dssp SCCC------CEEECTTSSEEEEECSS--------------------EEEEEEEETTTTEEEEEEEEECCCCCC--CGGG
T ss_pred CCCc------eEEECCCCCEEEEEEcC--------------------CCEEEEEECCCCceeeecccccccccC--CCCc
Confidence 1111 17899999988766421 125899999998875543211110000 0000
Q ss_pred CCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 584 SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
......+|+|||+.+++.... ...+.++++.+....
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANI---SRELKVFTISGKVVG 308 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCEEE
T ss_pred ccccceEECCCCCEEEEecCC---CCcEEEEEecCCccc
Confidence 001235899999988776653 346888887665433
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-15 Score=191.08 Aligned_cols=378 Identities=10% Similarity=0.007 Sum_probs=222.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||+.++..... .+.+|++... .....+. .....
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~----------------------------------~v~~~d~~~~---~~~~~~~-~~~~~ 841 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKN----------------------------------KVLLFDIHTS---GLLAEIH-TGHHS 841 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETT----------------------------------EEEEEETTTC---CEEEEEE-CSSSS
T ss_pred eEEEEEECCCCCEEEEEcCC----------------------------------cEEEEEecCC---CceeEEc-CCCCC
Confidence 45678999999999988763 7889998652 2222222 12334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|||||+.++... ....|.+|++.++............ +..++|+|||+.|+....+.....
T Consensus 842 ~v~~~~~sp~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~h~~~----v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIAL---------SQYCVELWNIDSRLKVADCRGHLSW----VHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp CCCEEEECSSTTEEEEEC---------SSSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCceeeecCCCccc----eEEEEECCCCCEEEEEeCCCeEEE
Confidence 788999999999998854 3567899999887765444333322 778999999999887754322110
Q ss_pred ------CCCCCC-----------CCC-----------CceeeecCCcccccc--hhhhhccCchhhhHHHHhhcceEEEE
Q 002164 270 ------PKKPLV-----------PLG-----------PKMQSNEKRDIIQVR--TFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 270 ------~~~~~~-----------~~~-----------~~~~~~~~~~~~~~r--~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
...... +.. ..+............ ........+.+..++.....+.|+++
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 000000 000 000000000000000 00000000000001111134567788
Q ss_pred Ec-CCeee-ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccc
Q 002164 320 SL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 320 ~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~ 396 (958)
++ +++.. .+... ..+..++|||||++|+..+.+ +.+.+|++.++....+..+.
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~----------- 1044 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVIQVWNWQTGDYVFLQAHQ----------- 1044 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBEEEEETTTTEEECCBCCS-----------
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCceEEEecCC-----------
Confidence 87 66443 33333 678899999999999987633 48999999987665433221
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEec
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (958)
..+..+.|+||+..+.. +..+.+++|++ ..+.....+..+...+..++|||||+.|+..+.+
T Consensus 1045 --~~v~~~~~~~~~~l~~~--------------~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1045 --ETVKDFRLLQDSRLLSW--------------SFDGTVKVWNV--ITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp --SCEEEEEECSSSEEEEE--------------ESSSEEEEEET--TTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred --CcEEEEEEcCCCcEEEE--------------ECCCcEEEEEC--CCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence 34567899998864333 44567999996 4555566677777788999999999999887654
Q ss_pred cccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEE
Q 002164 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (958)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 556 (958)
+. +.++++.++ +...........+.. ++|||||++|+....+ ..|++
T Consensus 1107 ~~----v~iwd~~~~--~~~~~l~~h~~~v~~------~~~s~dg~~lat~~~d---------------------g~i~v 1153 (1249)
T 3sfz_A 1107 KT----AKIWSFDLL--SPLHELKGHNGCVRC------SAFSLDGILLATGDDN---------------------GEIRI 1153 (1249)
T ss_dssp SC----CCEECSSSS--SCSBCCCCCSSCEEE------EEECSSSSEEEEEETT---------------------SCCCE
T ss_pred Cc----EEEEECCCc--ceeeeeccCCCcEEE------EEECCCCCEEEEEeCC---------------------CEEEE
Confidence 43 444555553 222222222233333 7899999999887621 14889
Q ss_pred EECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 557 FDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 557 ~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
||+.+++.......... ........+.-...+|++||+.++... ..+.++++.+|+.
T Consensus 1154 wd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp EESSSSCCCCCCCCCC---------CCSCCCEEEECTTSSCEEEES------SSEEEBCSSSCBC
T ss_pred EECCCCceEEEeccccc--cccccccCceEEEEEECCCCCEEEECC------CeEEEEECCCCce
Confidence 99988775443211100 000000111123468999999876542 4689999888764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=163.01 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=180.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|||||+.|+..+.+ +.|.+|++.+ + ...+.+.++. .
T Consensus 110 ~V~~~~~~p~~~~l~s~s~D---------------------------------g~i~vwd~~~-~--~~~~~l~~h~--~ 151 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKGHT--D 151 (410)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECCCS--S
T ss_pred cEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEeccC--C
Confidence 46678899999999888775 5799999854 2 2345555433 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|+|||+.|+.... ...|.+||+.+++..+........ +..++|+|||+.|+...
T Consensus 152 ~V~~v~~~~~~~~l~sgs~---------D~~i~iwd~~~~~~~~~~~~h~~~----V~~v~~~p~~~~l~s~s------- 211 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSA---------DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 211 (410)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeEEEcCCCCC----EEEEEEeCCCCEEEEEe-------
Confidence 6889999999998887552 557788898887765544333322 77899999999988661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +|. ...+... ..+..+.|+|||+.|
T Consensus 212 ------------------------------------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 212 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 2245778888 664 3344444 667888999999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEE-------
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE------- 418 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~------- 418 (958)
+..+.+ +.+.+||+.++... .+..+. ..+..+.|+|++........
T Consensus 250 ~s~s~D-------------~~v~vwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 250 ASCSND-------------QTVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEcCC-------------CeEEEEECCCCceeeEecCCC-------------ceEEEEEEcCcccccchhhhccccccc
Confidence 887743 48999999865433 332221 33467888887532100000
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
....+...+..+..+.|.+||+ ..+.....+..+...+..+.|+|+|++|+..+.++ .|.+++..++ +....
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----~i~vwd~~~~--~~~~~ 375 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 375 (410)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred cCCCCCEEEEEeCCCeEEEEEC--CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--ceEEE
Confidence 0000000111244567999996 33434445555666778899999999998765433 3555566553 23333
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.......+.. +.|+|+|.+|+...
T Consensus 376 ~~~h~~~v~~------l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 376 LNAHEHFVTS------LDFHKTAPYVVTGS 399 (410)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EcCCCCcEEE------EEEcCCCCEEEEEe
Confidence 3444444444 88999999988776
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=160.16 Aligned_cols=289 Identities=10% Similarity=0.069 Sum_probs=167.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+..++|||||++||..+... .+--...|++++..++................+..++|+||+++|+..
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s------- 112 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS------- 112 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSS---SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-------
T ss_pred CCEEEEEECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-------
Confidence 4688999999999998865311 111145788998777654321111100111226789999999877644
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-----cCCC-ccccccccCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSP 341 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-----l~~~-~~~~~~~~Sp 341 (958)
....|.++++ +++... .... ..+..++|||
T Consensus 113 -------------------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 113 -------------------------------------------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -------------------------------------------TTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -------------------------------------------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 1223555566 553221 1122 5678899999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
||++|+..+.+ +.|.+||+.++... .+..+ ...+..++|+|+++.+++..
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~s~~~~~~~~s~--- 200 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYNAH-------------SSEVNCVAACPGKDTIFLSC--- 200 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTCSSCEEEE---
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCC-------------CCCEEEEEEccCCCceeeee---
Confidence 99999887633 48999999866543 33221 13457889999998766531
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCceEEE--eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
+..+.|.+||+ ..+.....+. .....+..++|+|++..++.....++ .|.++++..+ +....
T Consensus 201 ---------~~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd~~~~--~~~~~ 264 (357)
T 4g56_B 201 ---------GEDGRILLWDT--RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---NVSLVNIKNP--DSAQT 264 (357)
T ss_dssp ---------ETTSCEEECCT--TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEESSCG--GGCEE
T ss_pred ---------ccCCceEEEEC--CCCceeeeeeeccccccccchhhhhcccceEEEeeccc---ceeEEECCCC--cEeEE
Confidence 34557889986 2333222222 23344667899999766555444333 2555566653 33344
Q ss_pred eccCCccccCCCCCCceEeccCCce-EEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccc
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~ 577 (958)
.......+.. ++|+|||+. |+....+ ..|++||+++++..+.......
T Consensus 265 ~~~~~~~v~~------l~~sp~~~~~lasgs~D---------------------~~i~iwd~~~~~~~~~~~H~~~---- 313 (357)
T 4g56_B 265 SAVHSQNITG------LAYSYHSSPFLASISED---------------------CTVAVLDADFSEVFRDLSHRDF---- 313 (357)
T ss_dssp ECCCSSCEEE------EEECSSSSCCEEEEETT---------------------SCEEEECTTSCEEEEECCCSSC----
T ss_pred EeccceeEEE------EEEcCCCCCEEEEEeCC---------------------CEEEEEECCCCcEeEECCCCCC----
Confidence 4444444444 789999864 5544411 2499999999887665533321
Q ss_pred eeEeecCCCccccccc-cCCEEEEEEecCCCCceEEEEECCC
Q 002164 578 TTVALMSDQTEGDLYL-NQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 578 ~~~~~~~~~~~~~~s~-dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
+. ..+|+| |++.|+ +... ...+++++++.
T Consensus 314 -V~-------~vafsP~d~~~l~-s~s~---Dg~v~iW~~~~ 343 (357)
T 4g56_B 314 -VT-------GVAWSPLDHSKFT-TVGW---DHKVLHHHLPS 343 (357)
T ss_dssp -EE-------EEEECSSSTTEEE-EEET---TSCEEEEECC-
T ss_pred -EE-------EEEEeCCCCCEEE-EEcC---CCeEEEEECCC
Confidence 22 257898 666554 3332 24588888755
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=176.93 Aligned_cols=263 Identities=11% Similarity=0.081 Sum_probs=176.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||+...+ +.|.+|++.+ + .....+.. +..
T Consensus 15 ~v~~i~~sp~~~~la~~~~~---------------------------------g~v~iwd~~~-~--~~~~~~~~--~~~ 56 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVEIWNYET-Q--VEVRSIQV--TET 56 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC-C--ceEEEEec--CCC
Confidence 46789999999999998765 4789999854 2 23445543 335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+.|||||++|++... ...|.+|+..+++........... +..++|+|||+.|++..
T Consensus 57 ~v~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~------- 116 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEecCCCC----EEEEEEeCCCCEEEEEc-------
Confidence 7899999999999999652 568999999888765443323222 77899999999988761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-ee-eecCCC-ccccccccCC-CCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TV-KEIGPP-AVYTSLDPSP-DEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~-~~l~~~-~~~~~~~~Sp-DGk 344 (958)
....|.++++ ++ .. ..+... ..+..++|+| ||+
T Consensus 117 ------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ------------------------------------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ------------------------------------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 1245677777 44 33 334333 6688999999 888
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeec--CCCCceEEEEecc
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp--DG~~l~~~~~~~~ 421 (958)
.|+..+.+ +.|.+||+.++.. ..+.... ...+..+.|+| ||+.++..
T Consensus 155 ~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~----- 204 (814)
T 3mkq_A 155 TFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITA----- 204 (814)
T ss_dssp EEEEEETT-------------SEEEEEETTCSSCSEEEECCC------------TTCCCEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeCC-------------CeEEEEECCCCcceeEEecCC------------CCCEEEEEEEECCCCCEEEEE-----
Confidence 88877633 4899999975432 2222111 13456789999 88877763
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
+..+.|.+|+. ..+.....+..+...+..+.|+|+|+.|+.....+ .|.++++.++ +.......
T Consensus 205 --------~~dg~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~v~vwd~~~~--~~~~~~~~ 268 (814)
T 3mkq_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG----TLKIWNSSTY--KVEKTLNV 268 (814)
T ss_dssp --------CTTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETTTC--SEEEEECC
T ss_pred --------eCCCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--cEEEEeec
Confidence 44567999996 23333444455566778899999999888765433 2555566653 33333333
Q ss_pred CCccccCCCCCCceEeccCCceE
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTYV 524 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l 524 (958)
....+.. ++|+|+|+.+
T Consensus 269 ~~~~v~~------~~~~~~~~~~ 285 (814)
T 3mkq_A 269 GLERSWC------IATHPTGRKN 285 (814)
T ss_dssp SSSSEEE------EEECTTCGGG
T ss_pred CCCcEEE------EEEccCCCce
Confidence 3333333 7899999753
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=159.60 Aligned_cols=214 Identities=15% Similarity=0.213 Sum_probs=138.0
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+...+|.+++...+-|++ .|.||++||.+... ..| ...+..|+++||.|++ .|.
T Consensus 4 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~D~ 57 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD--------APVIHFHHGWPLSA-----------DDW----DAQLLFFLAHGYRVVA---HDR 57 (276)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECCCCcEEEEEecCCCC--------CCeEEEECCCCcch-----------hHH----HHHHHHHHhCCCEEEE---ecC
Confidence 566789888877664421 36799999964221 111 2345678889999999 666
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCC--
Q 002164 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (958)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (958)
+|+|.+.... .......+|+.++++.+ +.+++.|+||||||.+++.+++++ |++++++|++++......
T Consensus 58 ~G~G~S~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 131 (276)
T 1zoi_A 58 RGHGRSSQVWDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQT 131 (276)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccc
Confidence 7888875432 23456677888877765 235899999999999999988876 899999999886421100
Q ss_pred --CCCCcc----------------------------ccc-----------chhhhc-----HH-------HHHhcCcccc
Q 002164 799 --TPFGFQ----------------------------NED-----------RTLWEA-----TS-------TYVEMSPFMS 825 (958)
Q Consensus 799 --~~~~~~----------------------------~~~-----------~~~~~~-----~~-------~~~~~sp~~~ 825 (958)
.+.... ... ...|.. .. .+...+....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (276)
T 1zoi_A 132 PGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTED 211 (276)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhh
Confidence 000000 000 000000 00 0011122234
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.++++|+|+++|++|..+| +....+.++.+. ...+++++|++||... .++...+.+.+.+||.
T Consensus 212 l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 212 LKGIQQPVLVMHGDDDQIVP--YENSGVLSAKLL---PNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEEcCCCcccC--hHHHHHHHHhhC---CCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 56789999999999999998 764444443332 2479999999999874 4567788888888874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=156.28 Aligned_cols=270 Identities=10% Similarity=0.062 Sum_probs=167.1
Q ss_pred CCCCcee-----cC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC---C-ce
Q 002164 110 PLPALSF-----SP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---G-QE 179 (958)
Q Consensus 110 ~~~~~~~-----SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~---~-~~ 179 (958)
.+..+.| +| ||+.|+..+.+ +.|.+|++...... + ..
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D---------------------------------~~v~iWd~~~~~~~~~~~~~~ 69 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRD---------------------------------KTVMIWKLYEEEQNGYFGIPH 69 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETT---------------------------------SCEEEEEECSSCCSSBSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCC---------------------------------CEEEEEECCcCCccccccccc
Confidence 3456666 66 99999988875 47899998542110 1 12
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
..+.++ ...+...+|+|||+.|+... ....|.+||+.+++........... +..++|+|||+.|+
T Consensus 70 ~~l~~h--~~~V~~~~~~~~~~~l~s~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~ 134 (343)
T 2xzm_R 70 KALTGH--NHFVSDLALSQENCFAISSS---------WDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQIL 134 (343)
T ss_dssp EEECCC--SSCEEEEEECSSTTEEEEEE---------TTSEEEEEETTSSCEEEEEECCCSC----EEEEEECSSTTEEE
T ss_pred chhccC--CCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECCCCCEEE
Confidence 334443 34688999999999888754 2568999999888765433322222 77899999999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC---CC-ccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG---PP-AVY 334 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~---~~-~~~ 334 (958)
... ....|.++++ ......+. .. ..+
T Consensus 135 s~~-------------------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 135 SAG-------------------------------------------------AEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEE-------------------------------------------------TTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEc-------------------------------------------------CCCEEEEEeccCCceeeeecccCCCcee
Confidence 762 1234666676 33322222 12 556
Q ss_pred cccccCCCC----------cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCccee
Q 002164 335 TSLDPSPDE----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (958)
Q Consensus 335 ~~~~~SpDG----------k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (958)
..+.|+|++ ++|+..+. ++.|.+||..+.....+..+. ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~h~-------------~~v~~~ 219 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGW-------------DGRLKVWNTNFQIRYTFKAHE-------------SNVNHL 219 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEET-------------TSEEEEEETTTEEEEEEECCS-------------SCEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcC-------------CCEEEEEcCCCceeEEEcCcc-------------ccceEE
Confidence 788899987 56665552 358999996654444333221 345789
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+|+|||+.|+.. +..+.|.+|++ ...............+..++|+|+++.|+... .++ .++|
T Consensus 220 ~~s~~g~~l~sg-------------s~dg~v~iwd~--~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~--v~iw 281 (343)
T 2xzm_R 220 SISPNGKYIATG-------------GKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG--VKIF 281 (343)
T ss_dssp EECTTSSEEEEE-------------ETTCEEEEEES--SCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC--EEEE
T ss_pred EECCCCCEEEEE-------------cCCCeEEEEEC--CCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC--EEEE
Confidence 999999987763 45667999995 23333333333445578899999998776543 222 4555
Q ss_pred EEcCCCCCCCcEEEecc-----------CCccccCCCCCCceEeccCCceEEEEe
Q 002164 485 VISPGSKDVAPRILFDR-----------SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+ .++.......... ....+. .++|+|||++|+...
T Consensus 282 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 282 NL--MTQSKAPVCTIEAEPITKAEGQKGKNPQCT------SLAWNALGKKLFAGF 328 (343)
T ss_dssp ES--SSCCSCSEEECCCCSGGGBTTBCCSCCCEE------EEEECSSSCCEEEEE
T ss_pred Ee--CCCCCCceEEeecCcchhhhhhcCCCCceE------EEEECCCCCeEEEec
Confidence 44 3321222111110 111111 278999999998776
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=174.00 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=154.0
Q ss_pred EEeCCCeEEEEEEEecCCC-CCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH----HCCc---EE
Q 002164 644 YQRKDGVQLSATLYLPPGY-DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL----ARGF---AI 715 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~-~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~G~---~v 715 (958)
+...||.++++..+.|.+- .....++.|+||++||.+..... |. ..+..|+ ..|| .|
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~~-----------~~----~~~~~L~~~~~~~G~~~~~v 89 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKVV-----------WE----YYLPRLVAADAEGNYAIDKV 89 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGGG-----------GG----GGGGGSCCCBTTTTEEEEEE
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHHH-----------HH----HHHHHHHHhhhhcCcceeEE
Confidence 4567999999999988641 01112346899999996532211 11 1233555 3489 99
Q ss_pred EEcCCCCCCCCCCcccc-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 716 LGGPTTPIIGEGDEEAN-------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~-------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
++ .|.+|+|.+... .........|+.++++.+...-.+++.+++|+||||||.+++.++.++|++++++|
T Consensus 90 i~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 166 (398)
T 2y6u_A 90 LL---IDQVNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLI 166 (398)
T ss_dssp EE---ECCTTSHHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEE
T ss_pred EE---EcCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEE
Confidence 99 566688877542 12345667777777766532212444569999999999999999999999999999
Q ss_pred EeccCCCCCC--------CCCC---ccc--------ccc----------------hhhh--cH---HHHHh---------
Q 002164 789 ARSGAYNRTL--------TPFG---FQN--------EDR----------------TLWE--AT---STYVE--------- 819 (958)
Q Consensus 789 ~~~~~~~~~~--------~~~~---~~~--------~~~----------------~~~~--~~---~~~~~--------- 819 (958)
+++|...... .... ... ... ..+. .+ +.+..
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T 2y6u_A 167 LIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGD 246 (398)
T ss_dssp EESCCCSCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC----
T ss_pred EeccccccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCcccccc
Confidence 9998755311 0000 000 000 0000 00 00100
Q ss_pred ---------------------------cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 820 ---------------------------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 820 ---------------------------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
.+....+.++++|+|+++|++|..+| +..+.++++.+. .++++++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~--~~~~~~l~~~~~----~~~~~~~~~ 320 (398)
T 2y6u_A 247 DEDGGPVRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCP--PQNQLFLQKTLQ----NYHLDVIPG 320 (398)
T ss_dssp ----CCEEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEETT
T ss_pred ccCCCceEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCC--HHHHHHHHHhCC----CceEEEeCC
Confidence 01123456789999999999999998 888888877664 479999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 873 ESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
+||.+. .+....+.+.+.+||.+++....
T Consensus 321 ~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 349 (398)
T 2y6u_A 321 GSHLVN-VEAPDLVIERINHHIHEFVLTSP 349 (398)
T ss_dssp CCTTHH-HHSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccch-hcCHHHHHHHHHHHHHHHHHhHH
Confidence 999864 45677889999999999986543
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-15 Score=167.86 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=147.3
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
...+.+.+.+|..++.... + ..|+||++||++.... .| ...+..|+++||.|++
T Consensus 3 ~i~~~~~~~dG~~l~y~~~---G-------~gp~VV~lHG~~~~~~-----------~~----~~l~~~La~~Gy~Vi~- 56 (456)
T 3vdx_A 3 FITVGQENSTSIDLYYEDH---G-------TGVPVVLIHGFPLSGH-----------SW----ERQSAALLDAGYRVIT- 56 (456)
T ss_dssp EEEEEEETTEEEEEEEEEE---S-------SSEEEEEECCTTCCGG-----------GG----TTHHHHHHHHTEEEEE-
T ss_pred eEeecccccCCeEEEEEEe---C-------CCCEEEEECCCCCcHH-----------HH----HHHHHHHHHCCcEEEE-
Confidence 3445666778888874433 1 2588999999753211 11 1346678899999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCC
Q 002164 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYN 795 (958)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~ 795 (958)
.|.+|+|.+... ........+|+.++++++ +.++++++|||+||.+++.+++++ |++++++|++++...
T Consensus 57 --~D~rG~G~S~~~~~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~ 128 (456)
T 3vdx_A 57 --YDRRGFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128 (456)
T ss_dssp --ECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCS
T ss_pred --ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCccc
Confidence 555677777543 223567788888888876 345899999999999998888876 899999999998654
Q ss_pred CCCCCCCccccc--ch-----------------------hh---------hcHHHH-------------------H--hc
Q 002164 796 RTLTPFGFQNED--RT-----------------------LW---------EATSTY-------------------V--EM 820 (958)
Q Consensus 796 ~~~~~~~~~~~~--~~-----------------------~~---------~~~~~~-------------------~--~~ 820 (958)
............ .. .+ .....+ . ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (456)
T 3vdx_A 129 FLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYT 208 (456)
T ss_dssp CCBCCSSCCSCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTC
T ss_pred ccccccccccccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhh
Confidence 221110000000 00 00 000000 0 11
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+....+.++++|+|+++|++|..+| +....+.++.+. ..++++++|++||.+. .+....+.+.+.+||.+++..
T Consensus 209 d~~~~l~~i~~PvLiI~G~~D~~vp--~~~~~~~l~~~~---~~~~~~~i~gagH~~~-~e~p~~v~~~I~~FL~~~l~~ 282 (456)
T 3vdx_A 209 DFRADIPRIDVPALILHGTGDRTLP--IENTARVFHKAL---PSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAKALEA 282 (456)
T ss_dssp CCTTTSTTCCSCCEEEEETTCSSSC--GGGTHHHHHHHC---TTSEEEEETTCCSCTT-TTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhCCCCEEEEEeCCCCCcC--HHHHHHHHHHHC---CCceEEEeCCCCCcch-hhCHHHHHHHHHHHHHHhhcc
Confidence 2334567889999999999999998 774444333332 2469999999999975 467788999999999998753
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=157.64 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=130.6
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (958)
.|.||++||..... ..| ......|+++||.|++ .|.+|+|.+.... .......+|+.+++
T Consensus 16 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~GhG~s~~~~~~~~~~~~~~d~~~~~ 77 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS-----------ADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 77 (247)
T ss_dssp SCEEEEECCTTCCT-----------HHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCh-----------HHH----HHHHHHHHHCCCEEEe---cccCCCCCCHHHhcCCCHHHHHHHHHHHH
Confidence 36788999953211 111 1345567789999999 6667888654321 12455667888888
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-C--Cc---c-------cccch-hhhc
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F--GF---Q-------NEDRT-LWEA 813 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~--~~---~-------~~~~~-~~~~ 813 (958)
+++.+.+. +++.|+||||||.+++.+|.++| ++++|+.++........ . .+ . ..... ....
T Consensus 78 ~~l~~~~~---~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
T 1tqh_A 78 EFLKNKGY---EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQE 152 (247)
T ss_dssp HHHHHHTC---CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHcCC---CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhh
Confidence 88877643 58999999999999999999997 88888655432211000 0 00 0 00000 0000
Q ss_pred -----------HHHHHh--cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002164 814 -----------TSTYVE--MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (958)
Q Consensus 814 -----------~~~~~~--~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~ 880 (958)
...+.. .+....+.++++|+|++||++|..+| ++.++++++.++. ..++++++|++||.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e 228 (247)
T 1tqh_A 153 MEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLD 228 (247)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGS
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCC--cchHHHHHHhcCC--CceEEEEeCCCceeeccC
Confidence 000000 01223567789999999999999998 8888888877643 247999999999997544
Q ss_pred ccHHHHHHHHHHHHHH
Q 002164 881 ESIMHVLWETDRWLQK 896 (958)
Q Consensus 881 ~~~~~~~~~i~~fl~~ 896 (958)
+....+.+.+.+||++
T Consensus 229 ~~~~~~~~~i~~Fl~~ 244 (247)
T 1tqh_A 229 QEKDQLHEDIYAFLES 244 (247)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4467888999999976
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=162.52 Aligned_cols=258 Identities=10% Similarity=0.082 Sum_probs=165.8
Q ss_pred ceeEEEccCCCCCCceeeecc---C-CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC
Q 002164 164 GIGIHQLFPDGKLGQEIEIQG---F-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~---~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~ 239 (958)
.|++|++.+ ++...... + .....+...+|+|||+.++... ....|++|++++++.........
T Consensus 145 ~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---------~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 145 GMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM---------QANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp SEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTTCCEEEEEECSS
T ss_pred eEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEEC---------CCCEEEEEECCCceEEEEEcCCC
Confidence 689999854 33322210 0 1123677889999997665532 25689999999877654433222
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
.. +..++|+|||+.|+++.. ....|+++
T Consensus 212 ~~----~~~~~~~~~~~~l~~~~~------------------------------------------------~~~~i~~~ 239 (433)
T 3bws_A 212 KW----SKILLYDPIRDLVYCSNW------------------------------------------------ISEDISVI 239 (433)
T ss_dssp SS----EEEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred CC----eeEEEEcCCCCEEEEEec------------------------------------------------CCCcEEEE
Confidence 22 668999999998876610 12468899
Q ss_pred Ec-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 320 SL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 320 ~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
++ +++....... ..+..++|+|||++|++........ ...++.|++||+.+++.......+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~dg~i~~~d~~~~~~~~~~~~~------------ 302 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ-----ESGGGRLGIYSMDKEKLIDTIGPP------------ 302 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT-----CSCCEEEEEEETTTTEEEEEEEEE------------
T ss_pred ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc-----ccCCCeEEEEECCCCcEEeeccCC------------
Confidence 98 7765544433 6678899999999999887432100 012458999999876554433211
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
..+..+.|+|||+.+++.. ...+.+++|++ .+++..........+..++|+|||+.|+......
T Consensus 303 -~~~~~~~~~~~g~~l~~~~------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 303 -GNKRHIVSGNTENKIYVSD------------MCCSKIEVYDL---KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp -ECEEEEEECSSTTEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred -CCcceEEECCCCCEEEEEe------------cCCCEEEEEEC---CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence 2346789999999887741 34567999996 4444433334455567899999999988876543
Q ss_pred cc-----------ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 478 TR-----------RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 478 ~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.. ...|+++++.++ +........ ..+.. +.|+|||++|+...
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAG-NQPTG------LDVSPDNRYLVISD 419 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECS-SSEEE------EEECTTSCEEEEEE
T ss_pred CccccccccccccceEEEEEECCCC--cEEEEecCC-CCCce------EEEcCCCCEEEEEE
Confidence 21 137899998774 333333221 12222 78999999988765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-14 Score=153.91 Aligned_cols=289 Identities=12% Similarity=-0.012 Sum_probs=168.9
Q ss_pred eceeEEEccCCCCCCce-eeeccCCCCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~-~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
+.|++|++.+ ++. +.+. ..... ....++|||||++|+++.. ....|+++++.+++.......+..
T Consensus 11 ~~v~~~d~~~----~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEK----MAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVN--------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTT----TEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEET--------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCC----CcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeC--------CCCeEEEEECCCCCeEeeEEcCCc
Confidence 4789999854 332 2332 22111 3678999999999888642 246899999998887543322210
Q ss_pred c-ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 241 Y-LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 241 ~-~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. ....+..++|+|||+.|+++....... ..... ....+|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-------------------------------~~~~~------~~~~~i~v~ 120 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLE-------------------------------LTHFE------VQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEEC-------------------------------SSCEE------ECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccc-------------------------------ccccc------ccCceEEEE
Confidence 0 000155899999999988772100000 00000 012569999
Q ss_pred Ec-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 320 SL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 320 ~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
++ +++.. .+..+.....++|||||++|++.. +.+++||+++++.........
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~~----------- 174 (337)
T 1pby_B 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQS----------- 174 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTT-----------
T ss_pred ECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeeccc-----------
Confidence 99 77544 333334567789999999998882 279999998766543322111
Q ss_pred ccCcceeeeecCCCCceEEEE------------eccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceee
Q 002164 398 RKGMRSINWRSDKPSTLYWAE------------TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISW 463 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~ 463 (958)
....+.|+|||+.+++... ...++.... ......|+++++ .+++...+.. .......+.|
T Consensus 175 --~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 175 --WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP-TAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp --TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred --cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc-cccccceEEEeC---CCCCceEeecCCCCCceeeEEE
Confidence 1124479999998765210 000000000 011125788985 5555543322 2223446899
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccC
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (958)
+|||++|++. + ..|+++++.++ +........ ..... +.|+|||++|+....
T Consensus 249 s~dg~~l~~~---~---~~v~~~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~-------------- 299 (337)
T 1pby_B 249 NPAKTRAFGA---Y---NVLESFDLEKN--ASIKRVPLP-HSYYS------VNVSTDGSTVWLGGA-------------- 299 (337)
T ss_dssp CTTSSEEEEE---E---SEEEEEETTTT--EEEEEEECS-SCCCE------EEECTTSCEEEEESB--------------
T ss_pred CCCCCEEEEe---C---CeEEEEECCCC--cCcceecCC-Cceee------EEECCCCCEEEEEcC--------------
Confidence 9999998877 1 46888898774 222222211 11122 789999998876531
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEec
Q 002164 544 GATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 544 ~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
...|.+||+++++......
T Consensus 300 -------~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 300 -------LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp -------SSEEEEEETTTCCEEEEEE
T ss_pred -------CCcEEEEECcCCcEEEEEE
Confidence 1259999999887665543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=160.16 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=146.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+.|||||++|+... ....|.+||+++++........... +..++|+|||+.|+...
T Consensus 125 ~v~~v~~s~dg~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p~~~~l~s~s------- 184 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGA---------EDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLVSGS------- 184 (393)
T ss_dssp BEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred eEEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcCCCCEEEEec-------
Confidence 367899999999998855 2568899999988766554433332 77899999999988661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCC-CCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSP-DEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~Sp-DGk~l 346 (958)
....|.++++ +++... +.....+...+|+| ||+.|
T Consensus 185 ------------------------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 185 ------------------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred ------------------------------------------CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 2245777788 775433 33335677889999 99998
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+..+.+ +.+.+||+.++.. +.+..... ...+....+..+.|+|||+.|+..
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~~------~~~~h~~~v~~v~~~~~g~~l~s~--------- 274 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSENE------SGTGHKDSVYSVVFTRDGQSVVSG--------- 274 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEEEE---------
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeeccccc------CCCCCCCCEEEEEECCCCCEEEEE---------
Confidence 887733 4899999986543 33321100 001122456789999999987652
Q ss_pred ccccccCCeEEEEeCCCCC----------CCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002164 426 KVEVTPRDIIYTQQAEPVQ----------GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~----------g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 495 (958)
+..+.|.+|++.... +.....+..+...+..++|+|+|++|+..+.++ .|.++++.++ +.
T Consensus 275 ----s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~iwd~~~~--~~ 344 (393)
T 1erj_A 275 ----SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFWDKKSG--NP 344 (393)
T ss_dssp ----ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEEETTTC--CE
T ss_pred ----eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC----eEEEEECCCC--eE
Confidence 445678888862110 001112233445567789999999988765443 3566666664 33
Q ss_pred EEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..........+..-...+...|+|++..|+...
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 444444433333300001012345787777665
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-14 Score=157.79 Aligned_cols=318 Identities=9% Similarity=0.030 Sum_probs=193.1
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
....+.++ ...+...+|||||++|+.... ...|++|++.+++........... +..++|+|||+.
T Consensus 24 ~~~~l~~h--~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~ 88 (369)
T 3zwl_B 24 KAIKLTGH--ERPLTQVKYNKEGDLLFSCSK---------DSSASVWYSLNGERLGTLDGHTGT----IWSIDVDCFTKY 88 (369)
T ss_dssp EEEEEECC--SSCEEEEEECTTSCEEEEEES---------SSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSE
T ss_pred ccEEEEEe--eceEEEEEEcCCCCEEEEEeC---------CCEEEEEeCCCchhhhhhhhcCCc----EEEEEEcCCCCE
Confidence 34445543 357899999999999988652 558899999888766544433322 778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCcccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYT 335 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~ 335 (958)
|+... ....|.++++ +++.. .+.....+.
T Consensus 89 l~s~~-------------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~ 119 (369)
T 3zwl_B 89 CVTGS-------------------------------------------------ADYSIKLWDVSNGQCVATWKSPVPVK 119 (369)
T ss_dssp EEEEE-------------------------------------------------TTTEEEEEETTTCCEEEEEECSSCEE
T ss_pred EEEEe-------------------------------------------------CCCeEEEEECCCCcEEEEeecCCCeE
Confidence 98761 2245788888 66443 333336788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccc--cCcceeeeecCCCC
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR--KGMRSINWRSDKPS 412 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~--~~~~~~~~spDG~~ 412 (958)
.+.|+|||+.|+...... ....+.+.+|++..... ..+...... ......... ..+..+.|+|||+.
T Consensus 120 ~~~~~~~~~~l~~~~~~~--------~~~~g~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNV--------MKNPGSINIYEIERDSATHELTKVSEE--PIHKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp EEEECTTSSEEEEEECCB--------TTBCCEEEEEEEEECTTTCCEEEECSS--CSEEEECCTTCCCEEEEEECGGGCE
T ss_pred EEEEccCCCEEEEecCCc--------cCCCCEEEEEEecCCccceeecccccc--eeeeccCCcCccceeEEEEcCCCCE
Confidence 999999999999887431 11235899999874321 111100000 000000111 14578999999998
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCC-CCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++.. +..+.|++|++ .. +.....+......+..+.|+|||+.|+.....+ .|+++++.++
T Consensus 190 l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~ 250 (369)
T 3zwl_B 190 IIAG-------------HKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT----NSFLVDVSTL 250 (369)
T ss_dssp EEEE-------------ETTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred EEEE-------------cCCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc----eEEEEECCCC
Confidence 8763 44567999996 22 223334455566788899999999998775433 4667777664
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
+....... ...+.. +.|+|+|++++...... ...++.... ......+.+||+.+++........
T Consensus 251 --~~~~~~~~-~~~~~~------~~~~~~~~~l~~~~~~~---~~~~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 251 --QVLKKYET-DCPLNT------AVITPLKEFIILGGGQE---AKDVTTTSA----NEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp --CEEEEEEC-SSCEEE------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECC
T ss_pred --ceeeeecC-CCCcee------EEecCCCceEEEeecCC---CceEEEEec----CCCcceeEEEecCCCcchhheecc
Confidence 22333322 122222 78999999998886321 111111110 112336999999888776655433
Q ss_pred cccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 572 KEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
.. .+. ..+|+||++.++.... ...+.++++.++
T Consensus 315 ~~----~v~-------~~~~s~~~~~l~s~~~----dg~v~iw~~~~~ 347 (369)
T 3zwl_B 315 FG----PLN-------TVAISPQGTSYASGGE----DGFIRLHHFEKS 347 (369)
T ss_dssp SS----CEE-------EEEECTTSSEEEEEET----TSEEEEEEECHH
T ss_pred cC----cEE-------EEEECCCCCEEEEEcC----CCeEEEEECccc
Confidence 21 122 2578999987665443 245888887654
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=156.49 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=132.5
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++...+-+ + .|.||++||.+... ...| ...+..|+++||.|++ .|.+|+|
T Consensus 10 ~g~~l~~~~~g~--------~-~~~vvllHG~~~~~----------~~~~----~~~~~~l~~~g~~vi~---~D~~G~G 63 (254)
T 2ocg_A 10 NGVQLHYQQTGE--------G-DHAVLLLPGMLGSG----------ETDF----GPQLKNLNKKLFTVVA---WDPRGYG 63 (254)
T ss_dssp TTEEEEEEEEEC--------C-SEEEEEECCTTCCH----------HHHC----HHHHHHSCTTTEEEEE---ECCTTST
T ss_pred CCEEEEEEEecC--------C-CCeEEEECCCCCCC----------ccch----HHHHHHHhhCCCeEEE---ECCCCCC
Confidence 788887655421 1 36788999953110 0011 1345567788999999 5666788
Q ss_pred Ccccch-hhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-------
Q 002164 728 DEEAND-RFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------- 798 (958)
Q Consensus 728 ~~~~~~-~~~-~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------- 798 (958)
.+.... .+. .....++.++++++.+.+ .+++.++||||||.+|+.+|.++|++++++|+.++......
T Consensus 64 ~S~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 140 (254)
T 2ocg_A 64 HSRPPDRDFPADFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYE 140 (254)
T ss_dssp TCCSSCCCCCTTHHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHH
Confidence 775321 111 112334445555555543 35899999999999999999999999999999876432110
Q ss_pred --CCCC-cccccc-------------hhhhcH-HHHHhc-------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 799 --TPFG-FQNEDR-------------TLWEAT-STYVEM-------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 799 --~~~~-~~~~~~-------------~~~~~~-~~~~~~-------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
.... +..... ..|... ..+... .....+.++++|+|+++|++|..+| +..+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~ 218 (254)
T 2ocg_A 141 GIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP--RFHADFI 218 (254)
T ss_dssp TTSCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCC--HHHHHHH
Confidence 0000 000000 000000 000110 1233567889999999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+.++. .+++++|++||... .+....+.+.+.+||
T Consensus 219 ~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 219 HKHVKG----SRLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp HHHSTT----CEEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred HHhCCC----CEEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 776653 58899999999874 455677778888886
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=157.54 Aligned_cols=267 Identities=11% Similarity=-0.021 Sum_probs=181.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcc--------------cccceeeceeecCCCCCccceeeEeceeEEEccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELA--------------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~ 175 (958)
.+..++|||||++|+... +....++.+. .....+..+.+.+++......+.++.|.+|++.. +.
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~ 130 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA-PT 130 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC-C-
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CC
Confidence 578899999999999887 3222222221 3344556677788766555555557899999854 21
Q ss_pred CCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCC
Q 002164 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
......+.. ....+....|+|||+.|+.... ...|++|++.+++........... +..++|+|||
T Consensus 131 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~ 195 (337)
T 1gxr_A 131 PRIKAELTS--SAPACYALAISPDSKVCFSCCS---------DGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDG 195 (337)
T ss_dssp -EEEEEEEC--SSSCEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTS
T ss_pred cceeeeccc--CCCceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeecccCc----eEEEEECCCC
Confidence 111223332 2346888999999999888652 557999999888765544333322 7789999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-Ccc
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAV 333 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~-~~~ 333 (958)
+.|+... ....|.++++ +++...... ...
T Consensus 196 ~~l~~~~-------------------------------------------------~dg~i~~~d~~~~~~~~~~~~~~~ 226 (337)
T 1gxr_A 196 TKLWTGG-------------------------------------------------LDNTVRSWDLREGRQLQQHDFTSQ 226 (337)
T ss_dssp SEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECSSC
T ss_pred CEEEEEe-------------------------------------------------cCCcEEEEECCCCceEeeecCCCc
Confidence 9988761 2345888888 665443333 366
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..++|+|||+.|++...+ +.+.+|++.++....+..+. ..+..+.|+|||+.+
T Consensus 227 v~~~~~s~~~~~l~~~~~~-------------~~i~~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMES-------------SNVEVLHVNKPDKYQLHLHE-------------SCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEECTTSSEEEEEETT-------------SCEEEEETTSSCEEEECCCS-------------SCEEEEEECTTSSEE
T ss_pred eEEEEECCCCCEEEEEcCC-------------CcEEEEECCCCCeEEEcCCc-------------cceeEEEECCCCCEE
Confidence 7889999999999988733 48999999977655443321 345789999999987
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+.. +..+.+++|++ ..++..........+..+.|+|||+.|+.....+. ..+|.+
T Consensus 281 ~~~-------------~~dg~i~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iw~~ 335 (337)
T 1gxr_A 281 VST-------------GKDNLLNAWRT---PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK--ATVYEV 335 (337)
T ss_dssp EEE-------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC--EEEEEE
T ss_pred EEe-------------cCCCcEEEEEC---CCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCe--EEEEEE
Confidence 763 44567999996 44444444455667788999999999887764433 566654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-14 Score=158.50 Aligned_cols=267 Identities=12% Similarity=0.143 Sum_probs=169.3
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|++|++.+ +....+....+...+...+|+|||+.|+.... ...|.+|++.+++...........
T Consensus 113 ~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~- 178 (401)
T 4aez_A 113 RNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLG---------NGLVDIYDVESQTKLRTMAGHQAR- 178 (401)
T ss_dssp TEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC-
T ss_pred CeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECC---------CCeEEEEECcCCeEEEEecCCCCc-
Confidence 4799999965 44333322323447899999999999988652 558899999887765544333322
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
+..++| +++.|+... ..+.|.++++
T Consensus 179 ---v~~~~~--~~~~l~~~~-------------------------------------------------~dg~i~i~d~~ 204 (401)
T 4aez_A 179 ---VGCLSW--NRHVLSSGS-------------------------------------------------RSGAIHHHDVR 204 (401)
T ss_dssp ---EEEEEE--ETTEEEEEE-------------------------------------------------TTSEEEEEETT
T ss_pred ---eEEEEE--CCCEEEEEc-------------------------------------------------CCCCEEEEecc
Confidence 667888 456676551 2245777777
Q ss_pred CC--eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCccccccc
Q 002164 322 DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 ~g--~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~ 397 (958)
.+ ....+... ..+..++|+|||+.|+..+.+ +.|.+||+.++.. ..+..+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~------------- 258 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKTNH------------- 258 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEECCC-------------
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEecCC-------------
Confidence 33 23344444 678899999999999988743 4899999986543 333221
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
...+..+.|+|+|..+++.... ...+.|++|++ ..++..........+..+.|+|+|+.|+......
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~g----------s~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGG----------TMDKQIHFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred cceEEEEEECCCCCCEEEEecC----------CCCCEEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 1346789999999988874110 13567999996 4444443444556688899999999999876433
Q ss_pred ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEE
Q 002164 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (958)
.+...+|.+. ++..............+.. +.|+|||++|+....+ ..|.+|
T Consensus 326 dg~i~v~~~~--~~~~~~~~~~~~h~~~v~~------~~~s~dg~~l~s~~~d---------------------g~i~iw 376 (401)
T 4aez_A 326 DNNLSIWSYS--SSGLTKQVDIPAHDTRVLY------SALSPDGRILSTAASD---------------------ENLKFW 376 (401)
T ss_dssp TCEEEEEEEE--TTEEEEEEEEECCSSCCCE------EEECTTSSEEEEECTT---------------------SEEEEE
T ss_pred CCcEEEEecC--CccceeEEEecCCCCCEEE------EEECCCCCEEEEEeCC---------------------CcEEEE
Confidence 3224555544 4211111112233333333 7899999998877521 259999
Q ss_pred ECCCCceE
Q 002164 558 DINTGSKE 565 (958)
Q Consensus 558 dl~~g~~~ 565 (958)
++.+++..
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99877643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-13 Score=150.28 Aligned_cols=277 Identities=13% Similarity=0.066 Sum_probs=172.2
Q ss_pred CcccceeecCC----CCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEEEe
Q 002164 189 AKLNFVTWSQD----GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 189 ~~~~~~~wSPD----G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
..+...+|+|+ ++.|+... . ...|.+|+..+++.... ...... .+..++|++++..++...
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs-------~--D~~v~vW~~~~~~~~~~~~l~gh~~----~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGS-------L--DDLVKVWKWRDERLDLQWSLEGHQL----GVVSVDISHTLPIAASSS 99 (321)
T ss_dssp SCEEEEEEC-------CEEEEEE-------T--TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECSSSSEEEEEE
T ss_pred CcEEEEEEecCCCCCCCEEEEEc-------C--CCCEEEEECCCCCeeeeeeeccCCC----CEEEEEECCCCCEEEEEe
Confidence 57899999986 45666644 2 33455555555443221 122222 267899999999888661
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-cccccccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDP 339 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~ 339 (958)
....|.++++ +|+. ..+... ..+..++|
T Consensus 100 -------------------------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 130 (321)
T 3ow8_A 100 -------------------------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAF 130 (321)
T ss_dssp -------------------------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEE
T ss_pred -------------------------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEE
Confidence 2345778888 6643 344433 56778999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
||||++|+..+. .+.+.+|+++.+.. ..+.... ..+..++|+|||+.|+..
T Consensus 131 spdg~~l~~g~~-------------dg~v~i~~~~~~~~~~~~~~~~-------------~~v~~~~~spdg~~lasg-- 182 (321)
T 3ow8_A 131 SPDSQYLATGTH-------------VGKVNIFGVESGKKEYSLDTRG-------------KFILSIAYSPDGKYLASG-- 182 (321)
T ss_dssp CTTSSEEEEECT-------------TSEEEEEETTTCSEEEEEECSS-------------SCEEEEEECTTSSEEEEE--
T ss_pred CCCCCEEEEEcC-------------CCcEEEEEcCCCceeEEecCCC-------------ceEEEEEECCCCCEEEEE--
Confidence 999999988763 34899999985543 2332211 234678999999988763
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
+..+.|.+||+ ..+.....+......+..+.|+|||+.|+..+.++. |.++++..+ +....
T Consensus 183 -----------~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~----i~iwd~~~~--~~~~~ 243 (321)
T 3ow8_A 183 -----------AIDGIINIFDI--ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY----IKIYDVQHA--NLAGT 243 (321)
T ss_dssp -----------ETTSCEEEEET--TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC----EEEEETTTC--CEEEE
T ss_pred -----------cCCCeEEEEEC--CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe----EEEEECCCc--ceeEE
Confidence 44567899996 233333444555667888999999998887754433 444455543 22333
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccce
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~ 578 (958)
.......+.. ++|+|||++|+....+ ..|.+||+.+++.......... .
T Consensus 244 ~~~h~~~v~~------~~~sp~~~~l~s~s~D---------------------~~v~iwd~~~~~~~~~~~~h~~----~ 292 (321)
T 3ow8_A 244 LSGHASWVLN------VAFCPDDTHFVSSSSD---------------------KSVKVWDVGTRTCVHTFFDHQD----Q 292 (321)
T ss_dssp ECCCSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTTTEEEEEECCCSS----C
T ss_pred EcCCCCceEE------EEECCCCCEEEEEeCC---------------------CcEEEEeCCCCEEEEEEcCCCC----c
Confidence 3333333333 7899999998877621 2599999988876554433221 1
Q ss_pred eEeecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
+. ..+|++||+.++..... ..+.+++.
T Consensus 293 v~-------~v~~s~~g~~l~s~~~d----~~i~vwd~ 319 (321)
T 3ow8_A 293 VW-------GVKYNGNGSKIVSVGDD----QEIHIYDC 319 (321)
T ss_dssp EE-------EEEECTTSSEEEEEETT----CCEEEEEC
T ss_pred EE-------EEEECCCCCEEEEEeCC----CeEEEEeC
Confidence 22 24789999877644432 34666664
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-16 Score=155.67 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=111.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC--CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av 747 (958)
.|+||++||.. +++..+ ........+.++ ||.|+++ +.+|+|.+ ..++ +
T Consensus 2 mptIl~lHGf~-----------ss~~s~--k~~~l~~~~~~~~~~~~v~~p---dl~~~g~~---------~~~~----l 52 (202)
T 4fle_A 2 MSTLLYIHGFN-----------SSPSSA--KATTFKSWLQQHHPHIEMQIP---QLPPYPAE---------AAEM----L 52 (202)
T ss_dssp -CEEEEECCTT-----------CCTTCH--HHHHHHHHHHHHCTTSEEECC---CCCSSHHH---------HHHH----H
T ss_pred CcEEEEeCCCC-----------CCCCcc--HHHHHHHHHHHcCCCcEEEEe---CCCCCHHH---------HHHH----H
Confidence 38999999942 111111 011223445554 5899984 44555422 2222 3
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC----cccccchhhhcHHHHHhcCcc
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG----FQNEDRTLWEATSTYVEMSPF 823 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~sp~ 823 (958)
+.+.+. .+.++|+|+|+||||++|+.+|.+.|....+++...+..+....... .....................
T Consensus 53 ~~~~~~--~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T 4fle_A 53 ESIVMD--KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQ 130 (202)
T ss_dssp HHHHHH--HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTC
T ss_pred HHHHHh--cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhh
Confidence 333332 24579999999999999999999998877766655443221100000 000000000111111223444
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
..+.++++|+||+||++|.+|| ++++.++++ ++++.++||++|.+... .++++.|.+||+
T Consensus 131 ~~~~~~~~P~LiihG~~D~~Vp--~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 131 IEKLESPDLLWLLQQTGDEVLD--YRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp CSSCSCGGGEEEEEETTCSSSC--HHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhccCceEEEEEeCCCCCCC--HHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 5677888999999999999999 999988864 35899999999988644 345778888885
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-14 Score=157.25 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=160.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|++|.+.... +..+.++.. .......++|||||++|+++...+ +..+...+|.++.++|+.+++........
T Consensus 27 ~~i~~~~~d~~~--g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~---~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 27 KGIYTFRFNEET--GESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS---KDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp CEEEEEEEETTT--CCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS---STTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCEEEEEEeCCC--CCEEEeecc-cCCCCceEEECCCCCEEEEEEccC---CCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 367888774322 444444433 334567789999999998876311 12244556777776677766654321110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
....+++ ||+.|+++.. ....+.++++
T Consensus 101 --~p~~~~~--dg~~l~~~~~------------------------------------------------~~~~v~~~~~~ 128 (361)
T 3scy_A 101 --DPCYLTT--NGKNIVTANY------------------------------------------------SGGSITVFPIG 128 (361)
T ss_dssp --CEEEEEE--CSSEEEEEET------------------------------------------------TTTEEEEEEBC
T ss_pred --CcEEEEE--CCCEEEEEEC------------------------------------------------CCCEEEEEEeC
Confidence 0223444 8988887611 1233555555
Q ss_pred -CCeeeecCC-----C----------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-------E
Q 002164 322 -DGTVKEIGP-----P----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-------V 378 (958)
Q Consensus 322 -~g~~~~l~~-----~----------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-------~ 378 (958)
+|....+.. + .....++|||||++|++.... .+.+++|+++... .
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------------~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------------TDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTCCTTTCCCC
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------------CCEEEEEEEcCCCCcccccce
Confidence 333222210 0 122458999999999887632 3478899887332 1
Q ss_pred EEe-----ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe
Q 002164 379 REL-----CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (958)
Q Consensus 379 ~~l-----~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (958)
... ...+ ...+++.+.|+|||+.+++.. ...+.|++|++ ++++.+.+..
T Consensus 197 ~~~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~v~~------------~~~~~v~v~~~---~~g~~~~~~~ 250 (361)
T 3scy_A 197 LTKGTPEAFKVA-----------PGSGPRHLIFNSDGKFAYLIN------------EIGGTVIAFRY---ADGMLDEIQT 250 (361)
T ss_dssp EEEEEEEEEECC-----------TTCCEEEEEECTTSSEEEEEE------------TTTCEEEEEEE---ETTEEEEEEE
T ss_pred eecccccceecC-----------CCCCCeEEEEcCCCCEEEEEc------------CCCCeEEEEEe---cCCceEEeEE
Confidence 111 0111 013456899999999877741 12456888885 4444444432
Q ss_pred ecc------ccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC-CccccCCCCCCceEeccCCceEEE
Q 002164 454 LDL------RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIA 526 (958)
Q Consensus 454 ~~~------~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdG~~l~~ 526 (958)
... ....++|||||++|+++.........+|.++..++ +...+.... ..... .++|||||++|++
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~g~~~~------~~~~spdg~~l~~ 322 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLTGIHPR------NFIITPNGKYLLV 322 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEECSSCCC------EEEECTTSCEEEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecCCCCCc------eEEECCCCCEEEE
Confidence 211 12368999999998766544133367777776554 222222111 11111 1789999999887
Q ss_pred EeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
.... .+.-.+|.+|.++|+.+.+.
T Consensus 323 ~~~~------------------~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 323 ACRD------------------TNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EETT------------------TTEEEEEEECTTTCCEEECS
T ss_pred EECC------------------CCCEEEEEEECCCCcEeecc
Confidence 7521 11224666788888876654
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-15 Score=155.60 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=135.2
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.+|.+++...+ + + .|.||++||.+... ..| ...+..|+++||.|++ .|.
T Consensus 3 ~~~~~g~~l~y~~~---g-----~--~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~ 54 (273)
T 1a8s_A 3 FTTRDGTQIYYKDW---G-----S--GQPIVFSHGWPLNA-----------DSW----ESQMIFLAAQGYRVIA---HDR 54 (273)
T ss_dssp EECTTSCEEEEEEE---S-----C--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EecCCCcEEEEEEc---C-----C--CCEEEEECCCCCcH-----------HHH----hhHHhhHhhCCcEEEE---ECC
Confidence 56678888865544 1 1 36789999964221 111 2345678889999999 666
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCC--
Q 002164 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (958)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (958)
+|+|.+.... .......+|+.++++.+ +.+++.|+||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (273)
T 1a8s_A 55 RGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKT 128 (273)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccC
Confidence 7888775431 23456677777777654 346899999999999999877665 899999999876421100
Q ss_pred --CCCCcc----------------------------c-c--c--------chhhhc-----H-------HHHHhcCcccc
Q 002164 799 --TPFGFQ----------------------------N-E--D--------RTLWEA-----T-------STYVEMSPFMS 825 (958)
Q Consensus 799 --~~~~~~----------------------------~-~--~--------~~~~~~-----~-------~~~~~~sp~~~ 825 (958)
.+.... . . . ...|.. . ..+...+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T 1a8s_A 129 EANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTED 208 (273)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccccccCcHHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhh
Confidence 000000 0 0 0 000000 0 00111122334
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.++++|+|+++|++|..+| +....+.++.+.. ..+++++|++||.+. .++...+.+.+.+||.
T Consensus 209 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 209 LKKIDVPTLVVHGDADQVVP--IEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHTCCSCEEEEEETTCSSSC--STTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCccCC--hHHHHHHHHHhCC---CcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 56789999999999999998 7755444443322 368999999999874 4567788888999985
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-15 Score=153.70 Aligned_cols=206 Identities=13% Similarity=0.047 Sum_probs=136.5
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
++...+|.+++...+-+ .|.||++||.+.... .| ......|+ +||.|++ .+
T Consensus 6 ~~~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~----~~~~~~l~-~~~~vi~---~d 56 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSGS----------GPPVVLVGGALSTRA-----------GG----APLAERLA-PHFTVIC---YD 56 (262)
T ss_dssp EEECTTSCEEEEEEEEC----------SSEEEEECCTTCCGG-----------GG----HHHHHHHT-TTSEEEE---EC
T ss_pred eEEcCCCcEEEEEEcCC----------CCcEEEECCCCcChH-----------HH----HHHHHHHh-cCcEEEE---Ee
Confidence 45667899888666421 367899999642211 11 23444555 9999999 56
Q ss_pred CCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC
Q 002164 723 IIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 723 ~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (958)
.+|+|.+.... .......+|+.++++.+ + +++.++|||+||.+++.++.++| +++++|++++.........
T Consensus 57 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~l------~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~ 128 (262)
T 3r0v_A 57 RRGRGDSGDTPPYAVEREIEDLAAIIDAA------G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRP 128 (262)
T ss_dssp CTTSTTCCCCSSCCHHHHHHHHHHHHHHT------T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSC
T ss_pred cCCCcCCCCCCCCCHHHHHHHHHHHHHhc------C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccc
Confidence 66788775443 22455566666666553 3 58999999999999999999999 9999999998655322110
Q ss_pred Cccccc-------------------------c------------hhhhcHHH----H--------HhcCcccccCCCCCC
Q 002164 802 GFQNED-------------------------R------------TLWEATST----Y--------VEMSPFMSANKLKKP 832 (958)
Q Consensus 802 ~~~~~~-------------------------~------------~~~~~~~~----~--------~~~sp~~~~~~~~~P 832 (958)
...... . ..|..... + ....+...+.++++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 208 (262)
T 3r0v_A 129 PVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIP 208 (262)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSC
T ss_pred hhhhHHHHHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCC
Confidence 000000 0 00000000 0 001234556788999
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+|+++|++|..+| ++.+.++.+.+.. +++++++++||. ++...+.+.+.+||+
T Consensus 209 ~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~gH~----~~p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 209 TLVMDGGASPAWI--RHTAQELADTIPN----ARYVTLENQTHT----VAPDAIAPVLVEFFT 261 (262)
T ss_dssp EEEEECTTCCHHH--HHHHHHHHHHSTT----EEEEECCCSSSS----CCHHHHHHHHHHHHC
T ss_pred EEEEeecCCCCCC--HHHHHHHHHhCCC----CeEEEecCCCcc----cCHHHHHHHHHHHHh
Confidence 9999999999988 8888888777643 689999999993 345777888888875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=159.80 Aligned_cols=321 Identities=9% Similarity=0.015 Sum_probs=186.5
Q ss_pred eceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEc--CCCceeeccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV--DTGKARPLFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~--~~g~~~~lt~~~~ 239 (958)
+.|.+|+..+ ++ ...+. .+..+...+|||||++|+.... ...|.++|+ ++++...-.....
T Consensus 159 ~~V~v~D~~t----~~~~~~i~---~g~~~~~v~~spdg~~l~v~~~---------d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 159 GQIALVDGDS----KKIVKVID---TGYAVHISRMSASGRYLLVIGR---------DARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp TEEEEEETTT----CCEEEEEE---CSTTEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCEEEEEEECCS
T ss_pred CeEEEEECCC----ceEEEEEe---cCcccceEEECCCCCEEEEECC---------CCeEEEEECcCCCCcEEEEEecCC
Confidence 3688998754 33 23332 2223667889999999887652 368999999 6766543332222
Q ss_pred ccccccccceEEec----CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcce
Q 002164 240 IYLNAIFDNFVWVN----NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (958)
Q Consensus 240 ~~~~~~~~~~~wsp----DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~ 315 (958)
. ...++||| ||++|++... ...+
T Consensus 223 ~-----p~~va~sp~~~~dg~~l~v~~~------------------------------------------------~~~~ 249 (543)
T 1nir_A 223 E-----ARSVESSKFKGYEDRYTIAGAY------------------------------------------------WPPQ 249 (543)
T ss_dssp E-----EEEEEECCSTTCTTTEEEEEEE------------------------------------------------ESSE
T ss_pred C-----cceEEeCCCcCCCCCEEEEEEc------------------------------------------------cCCe
Confidence 1 56889999 9999987610 1234
Q ss_pred EEEEEc-CCeee-ecCC-----------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe
Q 002164 316 LVLVSL-DGTVK-EIGP-----------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (958)
Q Consensus 316 l~~~~~-~g~~~-~l~~-----------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l 381 (958)
|.++|. +++.. .+.. . ..+..+.+||||+.+++.... .+.|++||........+
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCccee
Confidence 667776 65432 2221 1 145678899999988877632 45899999875332111
Q ss_pred ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-EEeec--ccc
Q 002164 382 CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLD--LRY 458 (958)
Q Consensus 382 ~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~~--~~~ 458 (958)
+..+. ...+..+.|+|||++++... ...+.|.+||. ..++... +.... ...
T Consensus 318 ~~i~~-----------~~~~~~~~~spdg~~l~va~------------~~~~~v~v~D~---~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 318 TSIGA-----------APFLHDGGWDSSHRYFMTAA------------NNSNKVAVIDS---KDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EEEEC-----------CSSCCCEEECTTSCEEEEEE------------GGGTEEEEEET---TTTEEEEEEECSSSBCCT
T ss_pred EEecc-----------CcCccCceECCCCCEEEEEe------------cCCCeEEEEEC---CCCeEEEeeccCCCCCCC
Confidence 11111 13456789999999876631 23557888996 4444333 32111 111
Q ss_pred Ccee-eecCCceEEEEEeccccceEEEEEcCCCCC-----CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeecc
Q 002164 459 GGIS-WCDDSLALVYESWYKTRRTRTWVISPGSKD-----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (958)
Q Consensus 459 ~~~~-~spDg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (958)
.... ++|++..++.+...+.+ .|.++++++.. .+............. .+.++|||++|+.....
T Consensus 372 ~g~~~~~p~~g~~~~s~~~~d~--~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~------~v~~~pdg~~l~v~~~~-- 441 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTSHLGDG--SISLIGTDPKNHPQYAWKKVAELQGQGGGSL------FIKTHPKSSHLYVDTTF-- 441 (543)
T ss_dssp TCEEEEETTTEEEEEEEBSSSS--EEEEEECCTTTCTTTBTSEEEEEECSCSCCC------CEECCTTCCEEEECCTT--
T ss_pred CCcccCCCCCccEEEeccCCCc--eEEEEEeCCCCCchhcCeEEEEEEcCCCCce------EEEcCCCCCcEEEecCC--
Confidence 2333 46887776665443322 34455554411 122222222222212 27899999998865410
Q ss_pred CCCcEEEEccCCCCCC-CCCCeEEEEECCCCceE-EEec-------CCcccccceeEeecCCCccccccccCCEEEEEEe
Q 002164 533 DEGTYILLNGNGATPE-GNIPFLDLFDINTGSKE-RIWE-------SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (958)
Q Consensus 533 ~~~~~~~~~~~~~~~~-~~~~~L~~~dl~~g~~~-~l~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (958)
.+. .....|.+||+++++.. .+.. .++. ..+. .+.|++||+++++...
T Consensus 442 -------------~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~---~~~~-------~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 442 -------------NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA---KRVV-------QPEYNKRGDEVWFSVW 498 (543)
T ss_dssp -------------CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC---CEEE-------EEEECSSSSEEEEEEE
T ss_pred -------------CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC---CceE-------eccCCCCCCEEEEEee
Confidence 000 00236999999988754 3321 0100 0112 2579999999999876
Q ss_pred cC-CCCceEEEEECCCCCeeE
Q 002164 604 SK-TENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 604 s~-~~p~~~~~~d~~~g~~~~ 623 (958)
+. .....|.++|..+++.+.
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEE
T ss_pred cCCCCCCeEEEEECCCceEEE
Confidence 54 446789999998887654
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=159.53 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=131.4
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcH-HHHHHHHCCcEEEEcCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST-SVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
+|.++++..+.|++ ..+.|+||++||+..... .| ... ....|+++||.|+.+ +.+|+
T Consensus 15 ~g~~l~~~~~~p~~-----~~~~~~vv~~hG~~~~~~-----------~~---~~~~~~~~l~~~G~~v~~~---d~~g~ 72 (210)
T 1imj_A 15 QGQALFFREALPGS-----GQARFSVLLLHGIRFSSE-----------TW---QNLGTLHRLAQAGYRAVAI---DLPGL 72 (210)
T ss_dssp TTEEECEEEEECSS-----SCCSCEEEECCCTTCCHH-----------HH---HHHTHHHHHHHTTCEEEEE---CCTTS
T ss_pred CCeEEEEEEeCCCC-----CCCCceEEEECCCCCccc-----------ee---ecchhHHHHHHCCCeEEEe---cCCCC
Confidence 89999999999864 123799999999642110 11 111 366788999999994 45566
Q ss_pred CCcccch--hhHHHHH--HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC
Q 002164 727 GDEEAND--RFVEQLV--ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (958)
Q Consensus 727 G~~~~~~--~~~~~~~--~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~ 802 (958)
|.+.... ....... .++..+++.+ +.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 73 g~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~---- 142 (210)
T 1imj_A 73 GHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---- 142 (210)
T ss_dssp GGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----
T ss_pred CCCCCCCCcchhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc----
Confidence 6654322 1112222 4555555543 346899999999999999999999999999999988643110
Q ss_pred cccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc
Q 002164 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882 (958)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~ 882 (958)
....+.++++|+|+++|++|. ++ .+..+++ +.+ ...++.++++++|.+. .+.
T Consensus 143 -------------------~~~~~~~~~~p~l~i~g~~D~-~~--~~~~~~~-~~~----~~~~~~~~~~~~H~~~-~~~ 194 (210)
T 1imj_A 143 -------------------NAANYASVKTPALIVYGDQDP-MG--QTSFEHL-KQL----PNHRVLIMKGAGHPCY-LDK 194 (210)
T ss_dssp -------------------CHHHHHTCCSCEEEEEETTCH-HH--HHHHHHH-TTS----SSEEEEEETTCCTTHH-HHC
T ss_pred -------------------cchhhhhCCCCEEEEEcCccc-CC--HHHHHHH-hhC----CCCCEEEecCCCcchh-hcC
Confidence 112234568999999999999 87 7766665 433 3579999999999863 344
Q ss_pred HHHHHHHHHHHHHH
Q 002164 883 IMHVLWETDRWLQK 896 (958)
Q Consensus 883 ~~~~~~~i~~fl~~ 896 (958)
...+.+.+.+||++
T Consensus 195 ~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 195 PEEWHTGLLDFLQG 208 (210)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 56677788888865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=161.42 Aligned_cols=202 Identities=10% Similarity=0.064 Sum_probs=135.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|||||++|+... ++....|.+||+.+++.......... +..++|||||++|+...
T Consensus 135 ~~~~v~fSpDg~~la~as-------~~~d~~i~iwd~~~~~~~~~~~~~~~-----V~~v~fspdg~~l~s~s------- 195 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIAS-------SKVPAIMRIIDPSDLTEKFEIETRGE-----VKDLHFSTDGKVVAYIT------- 195 (365)
T ss_dssp CEEEEEECTTSSCEEEEE-------SCSSCEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSSEEEEEC-------
T ss_pred CEEEEEEcCCCCEEEEEE-------CCCCCEEEEeECCCCcEEEEeCCCCc-----eEEEEEccCCceEEecc-------
Confidence 355689999999998865 23356899999999887655443332 77999999999999771
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-e-cCC-C-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-E-IGP-P-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~-l~~-~-~~~~~~~~SpDGk 344 (958)
...+.+++. +|... . ... . ..+..++|||||+
T Consensus 196 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 196 -------------------------------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp -------------------------------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred -------------------------------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 123556666 55322 2 222 2 5678899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.++..+.+.. ....+++|++.......+..... .+....+..++|||||+.|+.-
T Consensus 233 ~l~~~s~d~~---------~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~V~~~~~Spdg~~lasg-------- 287 (365)
T 4h5i_A 233 VLIAASLKKG---------KGIVLTKISIKSGNTSVLRSKQV--------TNRFKGITSMDVDMKGELAVLA-------- 287 (365)
T ss_dssp EEEEEEESSS---------CCEEEEEEEEETTEEEEEEEEEE--------ESSCSCEEEEEECTTSCEEEEE--------
T ss_pred EEEEEecCCc---------ceeEEeecccccceecceeeeee--------cCCCCCeEeEEECCCCCceEEE--------
Confidence 9998875432 12257778877544332211110 0111345789999999988773
Q ss_pred cccccccCCeEEEEeCCCCCCCC-ceEE-EeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEG-PEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+..+.|.+||+ ..++ ...+ ..+...+..++|||||++|+..+.+++ .+||.+..
T Consensus 288 -----s~D~~V~iwd~---~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t--vrvw~ip~ 343 (365)
T 4h5i_A 288 -----SNDNSIALVKL---KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT--IHIIKLPL 343 (365)
T ss_dssp -----ETTSCEEEEET---TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE--EEEEECCT
T ss_pred -----cCCCEEEEEEC---CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe--EEEEEcCC
Confidence 44567999996 3333 3333 345667889999999999998876665 67776643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=150.02 Aligned_cols=267 Identities=15% Similarity=0.135 Sum_probs=172.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|++.. + .....+.+ +..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~d---------------------------------g~i~iw~~~~-~--~~~~~~~~--h~~ 66 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSAD---------------------------------KLIKIWGAYD-G--KFEKTISG--HKL 66 (312)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT-C--CEEEEECC--CSS
T ss_pred cEEEEEECCCCCEEEEeeCC---------------------------------CeEEEEeCCC-c--ccchhhcc--CCC
Confidence 46688999999999988765 4789999854 2 23344443 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+|||+.|+.... ...|.+|++.+++........... +..++|+|+++.|+...
T Consensus 67 ~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~------- 126 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD---------DKTLKIWDVSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGS------- 126 (312)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred ceEEEEEcCCCCEEEEECC---------CCEEEEEECCCCcEEEEEcCCCCC----EEEEEEcCCCCEEEEEe-------
Confidence 6889999999999988652 568999999988765443333322 67889999999988761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++ ...+... ..+..+.|+|||+.|
T Consensus 127 ------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 127 ------------------------------------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 2245778888 664 3444444 667889999999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
+..+.+ +.+.+||+..+.. +.+.... ...+..+.|+|||+.++..
T Consensus 165 ~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~--------- 210 (312)
T 4ery_A 165 VSSSYD-------------GLCRIWDTASGQCLKTLIDDD------------NPPVSFVKFSPNGKYILAA--------- 210 (312)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCSS------------CCCEEEEEECTTSSEEEEE---------
T ss_pred EEEeCC-------------CcEEEEECCCCceeeEEeccC------------CCceEEEEECCCCCEEEEE---------
Confidence 877633 4899999985543 3332211 0234568999999987763
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccc--cCceeee-cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR--YGGISWC-DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~--~~~~~~s-pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
+..+.|.+|++ ..+.....+...... .....|+ ++++.|+....++ .|+++++.++ +........
T Consensus 211 ----~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~--~~~~~~~~h 278 (312)
T 4ery_A 211 ----TLDNTLKLWDY--SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN----LVYIWNLQTK--EIVQKLQGH 278 (312)
T ss_dssp ----ETTTEEEEEET--TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS----CEEEEETTTC--CEEEEECCC
T ss_pred ----cCCCeEEEEEC--CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC----EEEEEECCCc--hhhhhhhcc
Confidence 44567899996 222222233222221 1233455 4566665543332 3555566653 333334444
Q ss_pred CccccCCCCCCceEeccCCceEEEEe
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...+.. ++|+|++..++...
T Consensus 279 ~~~v~~------~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 279 TDVVIS------TACHPTENIIASAA 298 (312)
T ss_dssp SSCEEE------EEECSSSSEEEEEE
T ss_pred CCcEEE------EeecCcCCceEEEE
Confidence 444443 78999999888765
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-15 Score=159.12 Aligned_cols=214 Identities=16% Similarity=0.112 Sum_probs=140.2
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
..+...+|.+++...+-|++ .|.||++||.+..... .| ...+..| +.||.|++ .
T Consensus 5 ~~~~~~~g~~l~~~~~G~~~--------~~~vvllHG~~~~~~~----------~w----~~~~~~L-~~~~~vi~---~ 58 (286)
T 2yys_A 5 IGYVPVGEAELYVEDVGPVE--------GPALFVLHGGPGGNAY----------VL----REGLQDY-LEGFRVVY---F 58 (286)
T ss_dssp EEEEECSSCEEEEEEESCTT--------SCEEEEECCTTTCCSH----------HH----HHHHGGG-CTTSEEEE---E
T ss_pred eeEEeECCEEEEEEeecCCC--------CCEEEEECCCCCcchh----------HH----HHHHHHh-cCCCEEEE---E
Confidence 34555688999877765421 4679999996422110 11 1223334 56999999 6
Q ss_pred CCCCCCCccc-ch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 722 PIIGEGDEEA-ND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 722 ~~~G~G~~~~-~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
|.+|+|.+.. .. .......+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|+ ++++|++++....
T Consensus 59 Dl~G~G~S~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~ 131 (286)
T 2yys_A 59 DQRGSGRSLELPQDPRLFTVDALVEDTLLLAEAL------GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNF 131 (286)
T ss_dssp CCTTSTTSCCCCSCGGGCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBH
T ss_pred CCCCCCCCCCCccCcccCcHHHHHHHHHHHHHHh------CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCc
Confidence 6678888765 32 23556677777776664 23589999999999999999999999 9999999875421
Q ss_pred CC-C-CC--------------Cccc----cc-----c------hhh-hc----------------HHH--H---HhcCcc
Q 002164 797 TL-T-PF--------------GFQN----ED-----R------TLW-EA----------------TST--Y---VEMSPF 823 (958)
Q Consensus 797 ~~-~-~~--------------~~~~----~~-----~------~~~-~~----------------~~~--~---~~~sp~ 823 (958)
.. . .. .+.. .. . ..+ .. ... + ...+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (286)
T 2yys_A 132 PWLAARLAEAAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYT 211 (286)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCG
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChh
Confidence 00 0 00 0000 00 0 000 00 000 0 011222
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+.++++|+|+++|++|..+| +. ++++.+ +.. .+++++|++||... .+....+.+.+.+||.+.
T Consensus 212 ~~l~~i~~P~lvi~G~~D~~~~--~~-~~~~~~-~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 212 PYLTPERRPLYVLVGERDGTSY--PY-AEEVAS-RLR----APIRVLPEAGHYLW-IDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp GGCCCCSSCEEEEEETTCTTTT--TT-HHHHHH-HHT----CCEEEETTCCSSHH-HHCHHHHHHHHHHHHHTT
T ss_pred hhhhhcCCCEEEEEeCCCCcCC--Hh-HHHHHh-CCC----CCEEEeCCCCCCcC-hhhHHHHHHHHHHHHHhh
Confidence 3467789999999999999998 78 888888 765 47889999999874 455678889999999763
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=159.37 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=147.5
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+.+.+++.+. .|.++..+ +|+++ + |+||++||++.. .+...|.... .....++++||+|+
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~------~-~~v~llHG~~~~---------~~~~~w~~~~-~~~~~l~~~~~~vv 65 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG------P-HAVYLLDGLRAQ---------DDYNGWDINT-PAFEEYYQSGLSVI 65 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS------S-SEEEECCCTTCC---------SSSCHHHHHS-CHHHHHTTSSSEEE
T ss_pred eEEEEEEECcccCceeEEE--EcCCC------C-CEEEEECCCCCC---------CCcccccccC-cHHHHHhcCCeEEE
Confidence 4566677655 46666655 45443 1 488999996310 0001111000 12345677899999
Q ss_pred EcCCCCCCCCCCccc---------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 717 GGPTTPIIGEGDEEA---------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
.++..+..++..... ...+.....+|+. .++.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 66 ~pd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 142 (280)
T 1dqz_A 66 MPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMP---AWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYA 142 (280)
T ss_dssp EECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHHH---HHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEE
T ss_pred EECCCCCccccCCCCCCccccccccccHHHHHHHHHH---HHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEE
Confidence 987654333321100 1122222234444 4444433467789999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCC-cc---------cccchhhhc--HHHHHhcCcccccCCC---CCCEEEEeeCCCC----------
Q 002164 788 IARSGAYNRTLTPFG-FQ---------NEDRTLWEA--TSTYVEMSPFMSANKL---KKPILLVHGEEDN---------- 842 (958)
Q Consensus 788 v~~~~~~~~~~~~~~-~~---------~~~~~~~~~--~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~---------- 842 (958)
|+++|.++....... +. ......|.. ...+...+|...+.++ ++|+++.||+.|.
T Consensus 143 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~ 222 (280)
T 1dqz_A 143 ASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPA 222 (280)
T ss_dssp EEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHH
T ss_pred EEecCcccccCcchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccch
Confidence 999998764321000 00 000011111 1245666777665554 5899999999997
Q ss_pred ----CCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 843 ----NSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 843 ----~v~~~~~~~~~~~~~l~~~g-~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
.++ ..++++++++|+..| +++++.++++++|.+. .....+...+.||.+.|+
T Consensus 223 ~~~e~~~--~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 223 KFLEGLT--LRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHHhC
Confidence 456 788999999999999 9999999998899862 234456677788877664
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=160.83 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=140.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|..++....-+ .|+||++||.+.... .|. ..+..|+++||.|++ .+.+|+|
T Consensus 17 ~g~~l~~~~~g~----------~~~vv~~HG~~~~~~-----------~~~----~~~~~l~~~g~~v~~---~d~~G~G 68 (309)
T 3u1t_A 17 EGATIAYVDEGS----------GQPVLFLHGNPTSSY-----------LWR----NIIPYVVAAGYRAVA---PDLIGMG 68 (309)
T ss_dssp TTEEEEEEEEEC----------SSEEEEECCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTST
T ss_pred CCeEEEEEEcCC----------CCEEEEECCCcchhh-----------hHH----HHHHHHHhCCCEEEE---EccCCCC
Confidence 788887655421 468999999642211 111 234566889999999 5556777
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCccc
Q 002164 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN 805 (958)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~ 805 (958)
.+.... .......+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|++++..........+..
T Consensus 69 ~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 142 (309)
T 3u1t_A 69 DSAKPDIEYRLQDHVAYMDGFIDAL------GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEA 142 (309)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGG
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHc------CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccc
Confidence 775432 23456667777666654 2358999999999999999999999999999999876542210000000
Q ss_pred --------------c----------------------c-chh-hhcHHHHHh-----------------c----------
Q 002164 806 --------------E----------------------D-RTL-WEATSTYVE-----------------M---------- 820 (958)
Q Consensus 806 --------------~----------------------~-~~~-~~~~~~~~~-----------------~---------- 820 (958)
. . ... ......+.. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (309)
T 3u1t_A 143 MGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAE 222 (309)
T ss_dssp GHHHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHH
T ss_pred cchhhhHHHHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhh
Confidence 0 0 000 000000000 0
Q ss_pred ----CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 821 ----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 821 ----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+....+.++++|+|+++|++|..+| +....++.+.+.. .+++.++++||... .+....+.+.|.+||++
T Consensus 223 ~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 295 (309)
T 3u1t_A 223 AEVLKNGEWLMASPIPKLLFHAEPGALAP--KPVVDYLSENVPN----LEVRFVGAGTHFLQ-EDHPHLIGQGIADWLRR 295 (309)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSTT----EEEEEEEEESSCHH-HHCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCCCEEEEecCCCCCCC--HHHHHHHHhhCCC----CEEEEecCCcccch-hhCHHHHHHHHHHHHHh
Confidence 0112245678999999999999998 8888888877644 57777899999763 45678888999999999
Q ss_pred hhccC
Q 002164 897 YCVSN 901 (958)
Q Consensus 897 ~l~~~ 901 (958)
.....
T Consensus 296 ~~~~~ 300 (309)
T 3u1t_A 296 NKPHA 300 (309)
T ss_dssp HCCCC
T ss_pred cchhh
Confidence 87544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=163.34 Aligned_cols=269 Identities=10% Similarity=0.102 Sum_probs=171.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|+.. + .....+.. +..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~i~~~~--~--~~~~~~~~--~~~ 150 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN---------------------------------GELRLWNKT--G--ALLNVLNF--HRA 150 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETT--S--CEEEEECC--CCS
T ss_pred ceEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEeCC--C--CeeeeccC--CCc
Confidence 56788999999999988765 478899852 2 44455543 335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-----------cccccceEEecCCeEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-----------NAIFDNFVWVNNSTLL 258 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-----------~~~~~~~~wspDG~~l 258 (958)
.+..+.|+|||+.|+.... ...|.+|++.+++............ ...+..+.|+|++..+
T Consensus 151 ~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDV---------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV 221 (425)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred cEEEEEECCCCCEEEEEec---------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence 7899999999999988652 5678999998877655433222110 0004578899998744
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (958)
+.. ....|+++++ +++. ..+... ..+.
T Consensus 222 ~~~--------------------------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 222 IPG--------------------------------------------------PKGAIFVYQITEKTPTGKLIGHHGPIS 251 (425)
T ss_dssp EEC--------------------------------------------------GGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred EEc--------------------------------------------------CCCeEEEEEcCCCceeeeeccCCCceE
Confidence 432 2356888888 6643 334333 6788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.++|+|||+.|+....+ +.+.+||+..+.. ..+..+ ...+..+.|+||| .++
T Consensus 252 ~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDD-------------GTLRIWHGGNGNSQNCFYGH-------------SQSIVSASWVGDD-KVI 304 (425)
T ss_dssp EEEEETTTTEEEEEETT-------------SCEEEECSSSBSCSEEECCC-------------SSCEEEEEEETTT-EEE
T ss_pred EEEECCCCCEEEEEcCC-------------CEEEEEECCCCccceEecCC-------------CccEEEEEECCCC-EEE
Confidence 99999999988887633 4899999885433 222211 1345789999999 443
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCC-
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV- 493 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~- 493 (958)
.. +..+.|++|++ ..+.....+......+..+.|+|||+.|+.....+. ..+| ++..+..
T Consensus 305 ~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~i~--~~~~~~~~ 365 (425)
T 1r5m_A 305 SC-------------SMDGSVRLWSL--KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ--VNVY--DLKKLNSK 365 (425)
T ss_dssp EE-------------ETTSEEEEEET--TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC--EEEE--ECHHHHC-
T ss_pred EE-------------eCCCcEEEEEC--CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe--EEEE--ECCCCccc
Confidence 32 34568999996 233223333444566788999999998887764332 4455 4433210
Q ss_pred -----------------CcEEEeccCCc--cccCCCCCCceEeccCCceEEEEe
Q 002164 494 -----------------APRILFDRSSE--DVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 494 -----------------~~~~~~~~~~~--~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
........... .+.. ++|+|||++|+...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD------LSWNCAGNKISVAY 413 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEE------EEECTTSSEEEEEE
T ss_pred eeeeecccccccCcccchhhhhhcCcccCCceEE------EEccCCCceEEEEe
Confidence 01222222211 3333 78999999888776
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=152.23 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
...+...++...+. .+|++||+++|+|+||++|+.++.+.|+.++++|+.+|..... ..+.
T Consensus 114 ~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~-----------------~~~~- 174 (246)
T 4f21_A 114 IAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAW-----------------DNFK- 174 (246)
T ss_dssp HHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTH-----------------HHHS-
T ss_pred HHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCcc-----------------cccc-
Confidence 33344444444444 4899999999999999999999999999999999999853200 0000
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
........++|+|++||++|++|| ++.++++++.|+..|.++++..||+.||.+. .+.++.+.+||.+.|+
T Consensus 175 --~~~~~~~~~~Pvl~~HG~~D~vVp--~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 175 --GKITSINKGLPILVCHGTDDQVLP--EVLGHDLSDKLKVSGFANEYKHYVGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp --TTCCGGGTTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEESSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred --ccccccccCCchhhcccCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 000011235899999999999999 9999999999999999999999999999985 3346789999999874
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=157.91 Aligned_cols=201 Identities=13% Similarity=0.135 Sum_probs=129.5
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.++++..+.|++ .|+||++||.+.... .| ......|+++||.|++ .+.+|+
T Consensus 11 ~~g~~l~~~~~g~~~--------~~~vv~~hG~~~~~~-----------~~----~~~~~~l~~~G~~v~~---~d~~G~ 64 (286)
T 3qit_A 11 FGGNQICLCSWGSPE--------HPVVLCIHGILEQGL-----------AW----QEVALPLAAQGYRVVA---PDLFGH 64 (286)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCceEEEeecCCCC--------CCEEEEECCCCcccc-----------hH----HHHHHHhhhcCeEEEE---ECCCCC
Confidence 488999988885432 578999999642211 11 2456788999999999 555677
Q ss_pred CCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-C
Q 002164 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-F 801 (958)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~ 801 (958)
|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++........ .
T Consensus 65 G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (286)
T 3qit_A 65 GRSSHLEMVTSYSSLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138 (286)
T ss_dssp TTSCCCSSGGGCSHHHHHHHHHHHHHHS------CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---C
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhc------CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccch
Confidence 7765432 22344455555554432 34689999999999999999999999999999999875532211 0
Q ss_pred C--------------------cccccc---------hhhhc--HHHH---------------------------------
Q 002164 802 G--------------------FQNEDR---------TLWEA--TSTY--------------------------------- 817 (958)
Q Consensus 802 ~--------------------~~~~~~---------~~~~~--~~~~--------------------------------- 817 (958)
. +..... ..+.. ...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (286)
T 3qit_A 139 SAVNQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPG 218 (286)
T ss_dssp CHHHHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTT
T ss_pred hhhHHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhcccccccccccc
Confidence 0 000000 00000 0000
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 887 (958)
...+....+.++++|+|+++|++|..+| ++...++.+.+.. ++++++++ ||... .++...+.
T Consensus 219 ~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g-gH~~~-~e~p~~~~ 280 (286)
T 3qit_A 219 GRSQYLEMLKSIQVPTTLVYGDSSKLNR--PEDLQQQKMTMTQ----AKRVFLSG-GHNLH-IDAAAALA 280 (286)
T ss_dssp HHHHHHHHHHHCCSCEEEEEETTCCSSC--HHHHHHHHHHSTT----SEEEEESS-SSCHH-HHTHHHHH
T ss_pred chhHHHHHHhccCCCeEEEEeCCCcccC--HHHHHHHHHHCCC----CeEEEeeC-CchHh-hhChHHHH
Confidence 1111222345689999999999999998 8888887776643 48999999 99863 33333333
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-14 Score=153.70 Aligned_cols=273 Identities=10% Similarity=0.064 Sum_probs=169.4
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC--CceeeeccCC
Q 002164 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL--GQEIEIQGFP 186 (958)
Q Consensus 110 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~--~~~~~lt~~~ 186 (958)
.+..++|||++ +.|+..+.+ +.|.+|++..+... ...+.+.++
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D---------------------------------~~v~~W~~~~~~~~~~~~~~~~~~h- 64 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRD---------------------------------KTLISWKLTGDDQKFGVPVRSFKGH- 64 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETT---------------------------------SEEEEEEEEEETTEEEEEEEEEECC-
T ss_pred eEEEEEccCCCccEEEEecCC---------------------------------ccEEEecCCCCCccccccceEEeCC-
Confidence 46678899976 677776665 47889988542110 112334443
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
...+....|+|||++|+.... ...|.+||+.+++..+........ +..++|+|+++.|+...
T Consensus 65 -~~~v~~~~~s~dg~~l~s~s~---------D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s---- 126 (319)
T 3frx_A 65 -SHIVQDCTLTADGAYALSASW---------DKTLRLWDVATGETYQRFVGHKSD----VMSVDIDKKASMIISGS---- 126 (319)
T ss_dssp -SSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSCEEEEEE----
T ss_pred -cccEEEEEECCCCCEEEEEeC---------CCEEEEEECCCCCeeEEEccCCCc----EEEEEEcCCCCEEEEEe----
Confidence 346888999999999988652 568999999988765443333322 77899999999988762
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCC-
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDE- 343 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG- 343 (958)
....|.++++ +.....+... ..+..+.|+|++
T Consensus 127 ---------------------------------------------~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 127 ---------------------------------------------RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ---------------------------------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred ---------------------------------------------CCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 1234666677 4444455444 667778888854
Q ss_pred -----cEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 344 -----KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 344 -----k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
..|+..+. ++.|.+||+....... +..+ ...+..+.|+|||+.|+..
T Consensus 162 ~~~~~~~l~s~~~-------------d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~sp~g~~l~s~- 214 (319)
T 3frx_A 162 ADDDSVTIISAGN-------------DKMVKAWNLNQFQIEADFIGH-------------NSNINTLTASPDGTLIASA- 214 (319)
T ss_dssp ----CCEEEEEET-------------TSCEEEEETTTTEEEEEECCC-------------CSCEEEEEECTTSSEEEEE-
T ss_pred CCCCccEEEEEeC-------------CCEEEEEECCcchhheeecCC-------------CCcEEEEEEcCCCCEEEEE-
Confidence 35665553 3489999998654332 2221 1345789999999987763
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
+..+.|.+|++ ..++..........+..++|+|||+.|+..... + .++|.++... ...
T Consensus 215 ------------~~dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~--i~v~~~~~~~----~~~ 272 (319)
T 3frx_A 215 ------------GKDGEIMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-G--IKVFSLDPQY----LVD 272 (319)
T ss_dssp ------------ETTCEEEEEET---TTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-E--EEEEEETTEE----EEE
T ss_pred ------------eCCCeEEEEEC---CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-C--cEEEEeCcCe----eee
Confidence 45668999996 433332222334567789999999988876532 2 5666665321 111
Q ss_pred EeccCCcccc--CCCCCCceEeccCCceEEEEe
Q 002164 498 LFDRSSEDVY--SDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 498 ~~~~~~~~~~--~~~~~~~~~~spdG~~l~~~~ 528 (958)
.......... .......++|||||++|+...
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 1111000000 000111278999999998776
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=154.27 Aligned_cols=210 Identities=11% Similarity=0.124 Sum_probs=131.3
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|.+++.... + . -|.||++||.+.... .|. .....|+++||.|++ +|.+
T Consensus 12 ~~~~g~~l~y~~~---G----~---g~~vvllHG~~~~~~-----------~w~----~~~~~l~~~g~~vi~---~D~~ 63 (281)
T 3fob_A 12 ENQAPIEIYYEDH---G----T---GKPVVLIHGWPLSGR-----------SWE----YQVPALVEAGYRVIT---YDRR 63 (281)
T ss_dssp ETTEEEEEEEEEE---S----S---SEEEEEECCTTCCGG-----------GGT----TTHHHHHHTTEEEEE---ECCT
T ss_pred CCCCceEEEEEEC---C----C---CCeEEEECCCCCcHH-----------HHH----HHHHHHHhCCCEEEE---eCCC
Confidence 3456677765443 1 1 356788999753211 111 124578889999999 6667
Q ss_pred CCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEeccCCCCCCC--
Q 002164 725 GEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLT-- 799 (958)
Q Consensus 725 G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~-- 799 (958)
|+|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.+++. .|++++++|+.++.......
T Consensus 64 G~G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 137 (281)
T 3fob_A 64 GFGKSSQPWEGYEYDTFTSDLHQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSE 137 (281)
T ss_dssp TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCS
T ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHc------CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccc
Confidence 888875432 22456667777766654 23589999999999877766555 58999999988764221100
Q ss_pred --CCCccc-c------------------------------cc--------hhhh------------cHHHHHhcCccccc
Q 002164 800 --PFGFQN-E------------------------------DR--------TLWE------------ATSTYVEMSPFMSA 826 (958)
Q Consensus 800 --~~~~~~-~------------------------------~~--------~~~~------------~~~~~~~~sp~~~~ 826 (958)
+..... . .. ..|. ....+...+....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 217 (281)
T 3fob_A 138 DHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDL 217 (281)
T ss_dssp SSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred cccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhh
Confidence 000000 0 00 0000 00011122333456
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHH-HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDR-FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~-~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.++++|+|++||++|..+| ++.+.+ +.+.+. ..++++++++||... .+....+.+.+.+||.
T Consensus 218 ~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 218 EKFNIPTLIIHGDSDATVP--FEYSGKLTHEAIP----NSKVALIKGGPHGLN-ATHAKEFNEALLLFLK 280 (281)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHST----TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHC
T ss_pred hhcCCCEEEEecCCCCCcC--HHHHHHHHHHhCC----CceEEEeCCCCCchh-hhhHHHHHHHHHHHhh
Confidence 7899999999999999998 776644 434433 358999999999873 5667788888888874
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=152.45 Aligned_cols=213 Identities=14% Similarity=0.142 Sum_probs=135.0
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.+|.+++...+- + .|.||++||.+.... .| ...+..|+++||.|++ .|.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--g~~vvllHG~~~~~~-----------~w----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG--------Q--GRPVVFIHGWPLNGD-----------AW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEEC--------S--SSEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEecC--------C--CceEEEECCCcchHH-----------HH----HHHHHHHHhCCCeEEE---EcC
Confidence 566788888765441 1 356899999642211 11 2345678889999999 666
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCC--
Q 002164 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTL-- 798 (958)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~-- 798 (958)
+|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (274)
T 1a8q_A 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCcccccc
Confidence 7888775431 23456677777776654 335899999999999999877765 899999999886421100
Q ss_pred --CCCCcccc---------------------------c-----------chhhhc-----H-------HHHHhcCccccc
Q 002164 799 --TPFGFQNE---------------------------D-----------RTLWEA-----T-------STYVEMSPFMSA 826 (958)
Q Consensus 799 --~~~~~~~~---------------------------~-----------~~~~~~-----~-------~~~~~~sp~~~~ 826 (958)
.+...... . ...|.. . ..+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 1a8q_A 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred ccCcccchHHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHh
Confidence 00000000 0 000000 0 001112223456
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR-ESIMHVLWETDRWLQ 895 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~-~~~~~~~~~i~~fl~ 895 (958)
.++++|+|+++|++|..+| +....+.++.+. ...++++++++||..... +....+.+.+.+||.
T Consensus 209 ~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEEecCcCCCCC--cHHHHHHHHhhC---CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 7889999999999999998 775544443332 246899999999987532 167788888998874
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-15 Score=154.28 Aligned_cols=212 Identities=16% Similarity=0.135 Sum_probs=139.1
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
.+.+.||.+++...+-+. ..|+||++||.+.... .|. .....|+ .+|.|++ .|
T Consensus 8 ~~~~~~g~~l~y~~~G~~--------~~p~lvl~hG~~~~~~-----------~w~----~~~~~L~-~~~~vi~---~D 60 (266)
T 3om8_A 8 FLATSDGASLAYRLDGAA--------EKPLLALSNSIGTTLH-----------MWD----AQLPALT-RHFRVLR---YD 60 (266)
T ss_dssp EEECTTSCEEEEEEESCT--------TSCEEEEECCTTCCGG-----------GGG----GGHHHHH-TTCEEEE---EC
T ss_pred EEeccCCcEEEEEecCCC--------CCCEEEEeCCCccCHH-----------HHH----HHHHHhh-cCcEEEE---Ec
Confidence 356679999987776432 1588999999642211 111 2233454 5899999 67
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
.+|+|.+.... .......+|+.+.++.+ ..+++.++||||||.+++.+|.++|++++++|++++........
T Consensus 61 ~rG~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~ 134 (266)
T 3om8_A 61 ARGHGASSVPPGPYTLARLGEDVLELLDAL------EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAA 134 (266)
T ss_dssp CTTSTTSCCCCSCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchh
Confidence 77888875432 23456677777766654 23589999999999999999999999999999987643211100
Q ss_pred -C-----------Cccccc--------chhh--hc---------------HH-------HHHhcCcccccCCCCCCEEEE
Q 002164 801 -F-----------GFQNED--------RTLW--EA---------------TS-------TYVEMSPFMSANKLKKPILLV 836 (958)
Q Consensus 801 -~-----------~~~~~~--------~~~~--~~---------------~~-------~~~~~sp~~~~~~~~~P~Lii 836 (958)
| ...... ...+ .. .. .+...+....+.++++|+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi 214 (266)
T 3om8_A 135 QWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVI 214 (266)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEE
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEE
Confidence 0 000000 0000 00 00 011112234567789999999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+|++|..+| +..++++.+.+.. .++++++ +||.. ..+....+.+.+.+||.
T Consensus 215 ~G~~D~~~~--~~~~~~l~~~ip~----a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 215 AGAYDTVTA--ASHGELIAASIAG----ARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp EETTCSSSC--HHHHHHHHHHSTT----CEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred EeCCCCCCC--HHHHHHHHHhCCC----CEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 999999998 8888888887765 4888888 69976 36677788888888874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=152.96 Aligned_cols=282 Identities=10% Similarity=0.080 Sum_probs=189.9
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
-.++.||++|+|.... +...||.++.+|+..++|+... .--++++|++|+|+.......
T Consensus 19 g~~~~~g~~iy~~n~~-------d~~~ly~~~~dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~----- 77 (302)
T 3s25_A 19 GLFCESDGEVFFSNTN-------DNGRLYAMNIDGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKI----- 77 (302)
T ss_dssp TCEEEETTEEEEEEGG-------GTTEEEEEETTSCSCEEEEEEE---------EEEEEECSSEEEEEEECC--------
T ss_pred eEEEEeCCEEEEEeCC-------CCceEEEEcCCCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcc-----
Confidence 3467899999997642 2578999999999999997522 123579999999993221100
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeec
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIH 352 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~ 352 (958)
+...+-......||++++ +++.++|.... ...|+++|++|+|+...
T Consensus 78 ------------------------------~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~~~~~ 124 (302)
T 3s25_A 78 ------------------------------TSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYYLHYD 124 (302)
T ss_dssp ---------------------------------CCSSCCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEEEEES
T ss_pred ------------------------------cccceeccCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEEEeec
Confidence 000000002356999999 55667776541 22689999999998711
Q ss_pred CCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccC
Q 002164 353 RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (958)
Q Consensus 353 ~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 432 (958)
.. ....|+.++++|+..++|+.... ..|+++|+.|+|.. ...
T Consensus 125 ~~---------~~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~~iy~t~------------~g~ 166 (302)
T 3s25_A 125 TQ---------TATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDRYFYYNN------------PKN 166 (302)
T ss_dssp SS---------SCEEEEEEETTSCCCEEEESSCC-----------------CCSEEETTEEEEEC------------TTT
T ss_pred CC---------CCceEEEEECCCCCeEEEeCCCc-----------------eEeeEECCEEEEEe------------CCC
Confidence 10 13489999999988888886421 34789999988851 135
Q ss_pred CeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCC
Q 002164 433 DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (958)
Q Consensus 433 ~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (958)
.+||++++ +|+..++|.... ...+ ++|+|++|+|+.+.++ .+|++++++++ ..+++++...
T Consensus 167 ~~Iy~~~l---~g~~~~~l~~~~--~~~~-~~P~g~~iy~t~~~~~--~~I~~~~ldG~--~~~~Lt~~~~--------- 227 (302)
T 3s25_A 167 GQLYRYDT---ASQSEALFYDCN--CYKP-VVLDDTNVYYMDVNRD--NAIVHVNINNP--NPVVLTEANI--------- 227 (302)
T ss_dssp CCEEEEET---TTTEEEEEECSC--EEEE-EEEETTEEEEEEGGGT--TEEEEECSSSC--CCEECSCSCE---------
T ss_pred ceEEEEEC---CCCCEEEEeCCC--ccce-eeecCCEEEEEEcCCC--cEEEEEECCCC--CeEEEeCCCc---------
Confidence 57999985 777777775432 2223 5699999999977654 68999999995 4455543211
Q ss_pred CceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCcccccc
Q 002164 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLY 592 (958)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 592 (958)
+.|+|+|++|+|... +...+|+.+++++...++|..... .+++
T Consensus 228 --~~~~~~g~~Iy~~~~-------------------~~~~~i~~~~~DG~~r~~l~~~~~----------------~~i~ 270 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRG-------------------GDNPALCVVKNDGTGFKELAKGEF----------------CNIN 270 (302)
T ss_dssp --EEEEEETTEEEEEEC-------------------SSSCEEEEEETTSCCCEEEEESCE----------------EEEE
T ss_pred --ceEEECCCEEEEEEC-------------------CCCcEEEEEECCCCccEEeeCCcc----------------ceEE
Confidence 458999999988752 112479999999888888876431 1345
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCCeeEeec
Q 002164 593 LNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (958)
Q Consensus 593 ~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~ 626 (958)
+-++.++++..... .|+++.+++...++|.+
T Consensus 271 i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~~ 301 (302)
T 3s25_A 271 VTSQYVYFTDFVSN---KEYCTSTQNPDTIKALQ 301 (302)
T ss_dssp ECSSEEEEEETTTC---CEEEEESSSCCSCEECC
T ss_pred EeCCEEEEEECCCC---eEEEEECCCCCceEecC
Confidence 56778888765332 38888877666666653
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-15 Score=159.21 Aligned_cols=213 Identities=19% Similarity=0.160 Sum_probs=136.2
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++...+-+. . ..|.||++||++.... .+ . .....++++||.|++ .|.+|+
T Consensus 12 ~~g~~l~~~~~g~~-----~--~~~~vvllHG~~~~~~-----------~~---~-~~~~~l~~~g~~vi~---~D~~G~ 66 (293)
T 1mtz_A 12 VNGIYIYYKLCKAP-----E--EKAKLMTMHGGPGMSH-----------DY---L-LSLRDMTKEGITVLF---YDQFGC 66 (293)
T ss_dssp ETTEEEEEEEECCS-----S--CSEEEEEECCTTTCCS-----------GG---G-GGGGGGGGGTEEEEE---ECCTTS
T ss_pred ECCEEEEEEEECCC-----C--CCCeEEEEeCCCCcch-----------hH---H-HHHHHHHhcCcEEEE---ecCCCC
Confidence 37888876665321 1 1377899999642211 11 0 112245678999999 666788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-----
Q 002164 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL----- 798 (958)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~----- 798 (958)
|.+.... .......+|+.+.++.+. + .+++.|+||||||.+++.+|.++|++++++|+.++......
T Consensus 67 G~S~~~~~~~~~~~~~~~dl~~~~~~l~--~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (293)
T 1mtz_A 67 GRSEEPDQSKFTIDYGVEEAEALRSKLF--G---NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141 (293)
T ss_dssp TTSCCCCGGGCSHHHHHHHHHHHHHHHH--T---TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHH
T ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHhc--C---CCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHH
Confidence 8876542 224566777777777652 1 24899999999999999999999999999999987643100
Q ss_pred ------CCCC-------------cccc-c--------------chhhhcH-----------HHHH---------------
Q 002164 799 ------TPFG-------------FQNE-D--------------RTLWEAT-----------STYV--------------- 818 (958)
Q Consensus 799 ------~~~~-------------~~~~-~--------------~~~~~~~-----------~~~~--------------- 818 (958)
.+.. +... . ...|... ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (293)
T 1mtz_A 142 NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIK 221 (293)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTT
T ss_pred HHHHHhcCHHHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceeccccccc
Confidence 0000 0000 0 0000000 0010
Q ss_pred hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+....+.++++|+|+++|++| .++ +..+.++.+.+. .+++++++++||... .++...+.+.+.+||.++
T Consensus 222 ~~~~~~~l~~i~~P~lii~G~~D-~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 292 (293)
T 1mtz_A 222 DWDITDKISAIKIPTLITVGEYD-EVT--PNVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 292 (293)
T ss_dssp TCBCTTTGGGCCSCEEEEEETTC-SSC--HHHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred CCChhhhhccCCCCEEEEeeCCC-CCC--HHHHHHHHHhCC----CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 01112345567899999999999 666 777777777654 358999999999874 456778888999999765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=157.84 Aligned_cols=236 Identities=11% Similarity=0.128 Sum_probs=156.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|++...+ +.|++|++.. +.......+.. +..
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d---------------------------------~~v~i~~~~~-~~~~~~~~~~~--h~~ 53 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG-NKWVQVHELKE--HNG 53 (372)
T ss_dssp CCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET-TEEEEEEEEEC--CSS
T ss_pred CeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEeCCC-CcEEeeeeecC--CCC
Confidence 67889999999999988654 4789999854 10003344443 334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec---cCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.+....|+|||+.|+.... ...|.+|++.+++.... ..... .+..++|+|||+.|++..
T Consensus 54 ~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~---- 115 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGT---------DRNAYVWTLKGRTWKPTLVILRINR-----AARCVRWAPNEKKFAVGS---- 115 (372)
T ss_dssp CEEEEEEETTTTEEEEEET---------TSCEEEEEEETTEEEEEEECCCCSS-----CEEEEEECTTSSEEEEEE----
T ss_pred cccEEEEeCCCCEEEEEcC---------CCeEEEEECCCCeeeeeEEeecCCC-----ceeEEEECCCCCEEEEEe----
Confidence 7899999999999988652 45788888877764332 22222 277899999999998772
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----eeecCC-C-cccccccc
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGP-P-AVYTSLDP 339 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~~l~~-~-~~~~~~~~ 339 (958)
....|.++++ .+. ...+.. . ..+..++|
T Consensus 116 ---------------------------------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 116 ---------------------------------------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ---------------------------------------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred ---------------------------------------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 1123555555 332 233322 2 67889999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-------------------ceEEEeccCCccccCcccccccccC
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-------------------IFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-------------------~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+|||++|+....+ +.+.+||+.. .....+. .....
T Consensus 151 ~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 204 (372)
T 1k8k_C 151 HPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-------------SSCGW 204 (372)
T ss_dssp CTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-------------CCSSC
T ss_pred cCCCCEEEEEcCC-------------CCEEEEEcccccccccccccccccccchhhheEecC-------------CCCCe
Confidence 9999999887633 4899999641 1222221 11234
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
+..+.|+|||+.++.. +..+.|.+|++ ..+.....+......+..+.|+|||+.|+.. .+ +.
T Consensus 205 v~~~~~~~~~~~l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d-~~ 266 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWV-------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAG--HD-CF 266 (372)
T ss_dssp EEEEEECSSSSEEEEE-------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TT-SS
T ss_pred EEEEEECCCCCEEEEE-------------eCCCEEEEEEC--CCCceeEEEccCCCCeEEEEEecCCCEEEEE--eC-Ce
Confidence 5789999999977763 44567899996 2344444555555567889999999877655 22 23
Q ss_pred eEEEEEcC
Q 002164 481 TRTWVISP 488 (958)
Q Consensus 481 ~~l~~~~~ 488 (958)
..+|.++.
T Consensus 267 i~i~~~~~ 274 (372)
T 1k8k_C 267 PVLFTYDS 274 (372)
T ss_dssp CEEEEEET
T ss_pred EEEEEccC
Confidence 66777765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-14 Score=152.57 Aligned_cols=219 Identities=9% Similarity=-0.011 Sum_probs=134.4
Q ss_pred ceEEEEEc-CCeeee-----cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCC
Q 002164 314 TQLVLVSL-DGTVKE-----IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLP 385 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~-----l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~ 385 (958)
+.|.++|+ +|+... +..+ ..+..++|||||++|+..+.+ +.|.+||+.+++. +.+..+
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-------------~~i~iwd~~~~~~~~~~~~h- 168 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-------------ICIKVWDLAQQVVLSSYRAH- 168 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC-
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCc-
Confidence 34666676 553221 1122 678899999999999987743 4899999986654 333322
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE--eeccccCceee
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISW 463 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~ 463 (958)
...+..+.|+||++.+++.. +..+.|.+||+ ..+.....+. .....+..+.|
T Consensus 169 ------------~~~V~~~~~~~~~~~~l~s~------------s~D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 169 ------------AAQVTCVAASPHKDSVFLSC------------SEDNRILLWDT--RCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp ------------SSCEEEEEECSSCTTEEEEE------------ETTSCEEEEET--TSSSCEEECC----CCCEEEEEE
T ss_pred ------------CCceEEEEecCCCCCceeee------------ccccccccccc--cccceeeeeecceeeccceeeee
Confidence 24557899999998876641 34567899996 2333344442 22334567899
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCce-EEEEeeeccCCCcEEEEcc
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNG 542 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~~ 542 (958)
+|++..++.+...++ .|.++|+.++ +....+......+.. ++|+|||.. |+....+
T Consensus 223 ~p~~~~~l~sg~~dg---~v~~wd~~~~--~~~~~~~~h~~~v~~------v~fsp~g~~~lasgs~D------------ 279 (344)
T 4gqb_B 223 HPQQSEVFVFGDENG---TVSLVDTKST--SCVLSSAVHSQCVTG------LVFSPHSVPFLASLSED------------ 279 (344)
T ss_dssp CSSCTTEEEEEETTS---EEEEEESCC----CCEEEECCSSCEEE------EEECSSSSCCEEEEETT------------
T ss_pred cCCCCcceEEeccCC---cEEEEECCCC--cEEEEEcCCCCCEEE------EEEccCCCeEEEEEeCC------------
Confidence 997666554444332 3555666664 333444444444444 789999964 5554421
Q ss_pred CCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 543 NGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 543 ~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
..|++||+.+++..++....+. +. ..+|+||++.++.+.... ..+.+++++++
T Consensus 280 ---------~~i~vwd~~~~~~~~~~~H~~~-----V~-------~v~~sp~~~~llas~s~D---~~v~~w~v~~~ 332 (344)
T 4gqb_B 280 ---------CSLAVLDSSLSELFRSQAHRDF-----VR-------DATWSPLNHSLLTTVGWD---HQVVHHVVPTE 332 (344)
T ss_dssp ---------SCEEEECTTCCEEEEECCCSSC-----EE-------EEEECSSSTTEEEEEETT---SCEEEEECCC-
T ss_pred ---------CeEEEEECCCCcEEEEcCCCCC-----EE-------EEEEeCCCCeEEEEEcCC---CeEEEEECCCC
Confidence 2499999998877665433221 22 257899998887766532 34777777654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=149.43 Aligned_cols=262 Identities=13% Similarity=0.111 Sum_probs=150.0
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC--CCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~--~g~~~~lt~~~~~ 240 (958)
+.|++|++..++ ..+.+........+..++|||||++|++... . ...|.+++++ +|+.+.+......
T Consensus 15 ~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~--~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 15 QQIHVWNLNHEG---ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------P--EFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp TEEEEEEECTTS---CEEEEEEEECSSCCCCEEECTTSSEEEEEET------T--TTEEEEEEECTTTCCEEEEEEEECS
T ss_pred CeEEEEEECCCC---cEEEeeeEecCCCCceEEECCCCCEEEEeec------C--CCeEEEEEecCCCCceeeccccccC
Confidence 378899985433 2222222223346788999999999988653 1 2466666665 7776544322211
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
. .+..++|+|||+.|+++.. ....|++++
T Consensus 84 ~---~~~~~~~s~dg~~l~~~~~------------------------------------------------~~~~i~~~d 112 (343)
T 1ri6_A 84 G---SLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTR 112 (343)
T ss_dssp S---CCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEE
T ss_pred C---CCcEEEEcCCCCEEEEEec------------------------------------------------CCCeEEEEE
Confidence 1 1568999999998887611 123355666
Q ss_pred c-CCe---ee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEec--cCCccccCcc
Q 002164 321 L-DGT---VK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELC--DLPLAEDIPI 392 (958)
Q Consensus 321 ~-~g~---~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~--~~~~~~~~p~ 392 (958)
+ +|. .. .+.....+..++|||||++|++.... .+.+.+|++++ +....+. ......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~~---- 176 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTVE---- 176 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECST----
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCC------------CCEEEEEEecCCCceeeecccccccCC----
Confidence 5 442 22 22222557788999999999877622 23899999986 5444322 111000
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec---------cccCceee
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---------LRYGGISW 463 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---------~~~~~~~~ 463 (958)
...+..+.|+|||+.+++.. ...+.+.+++++. .+++.+.+.... .....++|
T Consensus 177 -----~~~~~~~~~~pdg~~l~~~~------------~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 177 -----GAGPRHMVFHPNEQYAYCVN------------ELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp -----TCCEEEEEECTTSSEEEEEE------------TTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred -----CCCcceEEECCCCCEEEEEe------------CCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEE
Confidence 02446789999999877641 2345788888621 233433332111 11225899
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+|||++|+++...++ ...+|.++..++..+......... .... ++|+|||++|+...
T Consensus 239 s~dg~~l~v~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~-~~~~------~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 239 TPDGRHLYACDRTAS-LITVFSVSEDGSVLSKEGFQPTET-QPRG------FNVDHSGKYLIAAG 295 (343)
T ss_dssp CTTSSEEEEEETTTT-EEEEEEECTTSCCEEEEEEEECSS-SCCC------EEECTTSSEEEEEC
T ss_pred CCCCCEEEEEecCCC-EEEEEEEcCCCCceEEeeeecCCC-ccce------EEECCCCCEEEEec
Confidence 999999876653332 245555554343212111111111 1222 78999999888765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=152.21 Aligned_cols=301 Identities=9% Similarity=0.039 Sum_probs=164.9
Q ss_pred CCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhh
Q 002164 217 SKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ 296 (958)
Q Consensus 217 ~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (958)
....+|.+|.++|+...+....... ....++|+|||+ |+++... .
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~---~p~~~a~spdg~-l~~~~~~--------------------~----------- 60 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQ---NPTYLALSAKDC-LYSVDKE--------------------D----------- 60 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECS---CCCCEEECTTCE-EEEEEEE--------------------T-----------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccC---CcceEEEccCCe-EEEEEec--------------------C-----------
Confidence 3456788888788776543221110 145799999999 6655100 0
Q ss_pred hhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC---C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE
Q 002164 297 DLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP---P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW 371 (958)
Q Consensus 297 d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~---~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~ 371 (958)
....|+++++ +|+.+.+.. . .....++|||||++|++.... .+.+.+|
T Consensus 61 ---------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------------~~~v~v~ 113 (347)
T 3hfq_A 61 ---------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------------KGTAEVM 113 (347)
T ss_dssp ---------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred ---------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC------------CCEEEEE
Confidence 2356888888 776655543 2 456778999999999888732 3479999
Q ss_pred ecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 372 TTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 372 d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
+++ .+..+.+.........|. .......+..+.|+|||+ +++. . ...+.+++|++ ..+++...
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~-l~v~-~-----------~~~~~v~~~~~--~~~g~~~~ 177 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR-LAVI-D-----------LGSDKVYVYNV--SDAGQLSE 177 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC-EEEE-E-----------TTTTEEEEEEE--CTTSCEEE
T ss_pred EeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc-EEEE-e-----------CCCCEEEEEEE--CCCCcEEE
Confidence 985 444444433221111110 000012345689999999 5442 2 23457888886 22444444
Q ss_pred EEeec----cccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEE
Q 002164 451 LHKLD----LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526 (958)
Q Consensus 451 l~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 526 (958)
+.... .....++|+|||++|++....++ ...+|.++..++.......................+.|||||++|+.
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEeCCCC-EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 32211 12345799999998887654433 35566666544311111111111110000000112779999998876
Q ss_pred EeeeccCCCcEEEEccCCCCCCCCCCeEEEEECC-CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecC
Q 002164 527 KIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK 605 (958)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~ 605 (958)
.... ...|.+|+++ +|+.+.+...... -..-...+|+|||+.+++.....
T Consensus 257 ~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 257 SNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp EEET--------------------TTEEEEEEECGGGCEEEEEEEECS---------SSCCCEEEECTTSSEEEEEETTT
T ss_pred EeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---------CCCcCeEEECCCCCEEEEEEcCC
Confidence 6421 1258888875 3333333221110 00012357999999877665532
Q ss_pred CCCceEEEEECCCCCeeEeec
Q 002164 606 TENTQYYIQSWPDKKSCQITD 626 (958)
Q Consensus 606 ~~p~~~~~~d~~~g~~~~Lt~ 626 (958)
..-.+|.++..+|+.+.+..
T Consensus 308 -~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 308 -DNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp -TEEEEEEECTTTCCEEEEEE
T ss_pred -CcEEEEEEeCCCCeEEeccc
Confidence 23345666877888776653
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=167.15 Aligned_cols=225 Identities=12% Similarity=0.011 Sum_probs=144.0
Q ss_pred CcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcE-
Q 002164 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA- 714 (958)
Q Consensus 637 ~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~- 714 (958)
.+.+.++|.+. .|....+++|+|++++ ..++|+|+++||+.+. .. ......+..|+++|++
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~---~~~~PvlvllHG~~~~--------~~------~~~~~~~~~l~~~g~~~ 228 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWA--------QS------MPVWPVLTSLTHRQQLP 228 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHH--------HT------SCCHHHHHHHHHTTSSC
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC---CCCCCEEEEeCCHHHh--------hc------CcHHHHHHHHHHcCCCC
Confidence 35677788765 6788999999998764 2359999999995321 10 0112346678888875
Q ss_pred ---EEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 002164 715 ---ILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (958)
Q Consensus 715 ---vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (958)
|+.+++.+..+...... ...+..... .+++.++.++. ..|+++++|+|+||||++|+.++.++|++|++++
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~---~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~ 305 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQ---QELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHH---HTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEE
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHH---HHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEE
Confidence 88866543111110000 111111122 34566776653 2588999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
+.+|.+.+.... - .....+. ..+.. . .......|++++||+.|..+ ..++++++++|+..|+++++.
T Consensus 306 ~~sg~~~~~~~~--~-~~~~~~~---~~~~~-~---~~~~~~~~i~l~~G~~D~~~---~~~~~~l~~~L~~~G~~v~~~ 372 (403)
T 3c8d_A 306 SQSGSYWWPHRG--G-QQEGVLL---EKLKA-G---EVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFWR 372 (403)
T ss_dssp EESCCTTTTCTT--S-SSCCHHH---HHHHT-T---SSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEEEE
T ss_pred EeccccccCCCC--C-CcHHHHH---HHHHh-c---cccCCCceEEEEeeCCCchh---HHHHHHHHHHHHhCCCCEEEE
Confidence 999976432110 0 0001111 11111 1 12345679999999998653 588999999999999999999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 869 ILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 869 ~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+||| +|.+. .....+...+.||.+..
T Consensus 373 ~~~G-gH~~~---~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 373 QVDG-GHDAL---CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp EESC-CSCHH---HHHHHHHHHHHHHHGGG
T ss_pred EeCC-CCCHH---HHHHHHHHHHHHHhccc
Confidence 9999 69852 23445666777776653
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=156.98 Aligned_cols=205 Identities=15% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++.... + ..|+||++||.+.... .|.. ....|++ ||.|++ .+.+|+|
T Consensus 11 ~~~~~~y~~~---g-------~~~~vv~~HG~~~~~~-----------~~~~----~~~~L~~-~~~vi~---~d~~G~G 61 (278)
T 3oos_A 11 PRGKFEYFLK---G-------EGPPLCVTHLYSEYND-----------NGNT----FANPFTD-HYSVYL---VNLKGCG 61 (278)
T ss_dssp TTEEEEEEEE---C-------SSSEEEECCSSEECCT-----------TCCT----TTGGGGG-TSEEEE---ECCTTST
T ss_pred CCceEEEEec---C-------CCCeEEEEcCCCcchH-----------HHHH----HHHHhhc-CceEEE---EcCCCCC
Confidence 6777764432 1 1468999999642211 1211 1234555 999999 5666788
Q ss_pred Ccccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---
Q 002164 728 DEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--- 800 (958)
Q Consensus 728 ~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--- 800 (958)
.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++........
T Consensus 62 ~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~ 135 (278)
T 3oos_A 62 NSDSAKNDSEYSMTETIKDLEAIREAL------YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKD 135 (278)
T ss_dssp TSCCCSSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTT
T ss_pred CCCCCCCcccCcHHHHHHHHHHHHHHh------CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccc
Confidence 775532 12345555555555443 34589999999999999999999999999999999875511000
Q ss_pred --CCccccc---------------------ch---hh-------------------------hcHH-----HHHhcCccc
Q 002164 801 --FGFQNED---------------------RT---LW-------------------------EATS-----TYVEMSPFM 824 (958)
Q Consensus 801 --~~~~~~~---------------------~~---~~-------------------------~~~~-----~~~~~sp~~ 824 (958)
+...... .. .| .... .+...+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (278)
T 3oos_A 136 SIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQ 215 (278)
T ss_dssp STTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHH
T ss_pred hhhhhhchhHHHHHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHH
Confidence 0000000 00 00 0000 011223334
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.+.++++|+|+++|++|..+| ++.+.++.+.++ .+++++++++||... .++...+.+.+.+||
T Consensus 216 ~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 216 KLKFVKIPSFIYCGKHDVQCP--YIFSCEIANLIP----NATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp HHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHST----TEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred HHhCCCCCEEEEEeccCCCCC--HHHHHHHHhhCC----CcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 567889999999999999998 888888887763 379999999999874 345566666666653
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=156.05 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=137.0
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++...+-|+ . .|.||++||.+... ..+....+..|+++||.|++ .|.+|+
T Consensus 8 ~~g~~l~y~~~G~~------~--~~~vvllHG~~~~~--------------~~w~~~~~~~L~~~G~~vi~---~D~rG~ 62 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------A--DPALLLVMGGNLSA--------------LGWPDEFARRLADGGLHVIR---YDHRDT 62 (298)
T ss_dssp ETTEEEEEEEESCT------T--SCEEEEECCTTCCG--------------GGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEeccCC------C--CCeEEEEcCCCCCc--------------cchHHHHHHHHHhCCCEEEe---eCCCCC
Confidence 48888887766432 1 36789999964211 11122234678889999999 666788
Q ss_pred CCccc--c-h--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CC----
Q 002164 727 GDEEA--N-D--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NR---- 796 (958)
Q Consensus 727 G~~~~--~-~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~---- 796 (958)
|.+.. + . .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++.. ..
T Consensus 63 G~S~~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 136 (298)
T 1q0r_A 63 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 136 (298)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred CCCCCCCCCcCCcCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCccccc
Confidence 88754 1 1 23456677777777664 33589999999999999999999999999999987654 21
Q ss_pred -------------CCCCCC------c-c----cccc------------------hhhhcH-------HHHHhc-------
Q 002164 797 -------------TLTPFG------F-Q----NEDR------------------TLWEAT-------STYVEM------- 820 (958)
Q Consensus 797 -------------~~~~~~------~-~----~~~~------------------~~~~~~-------~~~~~~------- 820 (958)
...... + . .... ..+... ..+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298)
T 1q0r_A 137 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 216 (298)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred chhhhhhhhhhhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchh
Confidence 000000 0 0 0000 000000 000000
Q ss_pred ----------Ccccc-cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002164 821 ----------SPFMS-ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (958)
Q Consensus 821 ----------sp~~~-~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~ 889 (958)
+.... +.++++|+|+++|++|..+| +..++++.+.+. ..+++++|++||.. ...+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gHe~-----p~~~~~~ 285 (298)
T 1q0r_A 217 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHAL-----PSSVHGP 285 (298)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSC-----CGGGHHH
T ss_pred hhhhhhhcCcccccccccccCCCEEEEEeCCCccCC--HHHHHHHHHhCC----CCEEEEcCCCCCCC-----cHHHHHH
Confidence 01123 66789999999999999998 888877766553 36999999999932 2456788
Q ss_pred HHHHHHHhh
Q 002164 890 TDRWLQKYC 898 (958)
Q Consensus 890 i~~fl~~~l 898 (958)
+.+||.+++
T Consensus 286 i~~fl~~~~ 294 (298)
T 1q0r_A 286 LAEVILAHT 294 (298)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 899998875
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=156.06 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=130.0
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av 747 (958)
|+||++||.+... ..| ......|+++||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 5 ~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l 66 (258)
T 3dqz_A 5 HHFVLVHNAYHGA-----------WIW----YKLKPLLESAGHRVTA---VELAASGIDPRPIQAVETVDEYSKPLIETL 66 (258)
T ss_dssp CEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEEE---ECCTTSTTCSSCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCcc-----------ccH----HHHHHHHHhCCCEEEE---ecCCCCcCCCCCCCccccHHHhHHHHHHHH
Confidence 8899999964221 112 1346678899999999 5666888775432 23445555555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC-------------cccccc------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-------------FQNEDR------ 808 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-------------~~~~~~------ 808 (958)
+.+ + . .+++.|+|||+||.+++.++.++|++++++|++++.......... ......
T Consensus 67 ~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T 3dqz_A 67 KSL---P-E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRN 141 (258)
T ss_dssp HTS---C-T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETT
T ss_pred HHh---c-c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhc
Confidence 443 2 1 268999999999999999999999999999999875432111100 000000
Q ss_pred ---------h------hh--hcHHH-----------------HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 809 ---------T------LW--EATST-----------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 809 ---------~------~~--~~~~~-----------------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
. .. ..... +............++|+|+++|++|..+| ++..+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~ 219 (258)
T 3dqz_A 142 GTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIP--CDFIRWM 219 (258)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHHHHH
T ss_pred cChhhhhhhHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeC--HHHHHHH
Confidence 0 00 00000 00011222222236899999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.+.+.. .+++++|++||... .++...+.+.|.+|+++|+
T Consensus 220 ~~~~~~----~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 220 IDNFNV----SKVYEIDGGDHMVM-LSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp HHHSCC----SCEEEETTCCSCHH-HHSHHHHHHHHHHHHHHTC
T ss_pred HHhCCc----ccEEEcCCCCCchh-hcChHHHHHHHHHHHHHhC
Confidence 877643 38889999999864 4667888899999999874
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=154.26 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=127.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (958)
.|+||++||.+..... |. ....|+ +||.|++ .+.+|+|.+..... ......+|+.++++
T Consensus 16 ~~~vv~~hG~~~~~~~-----------~~-----~~~~l~-~g~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e0x_A 16 PNTLLFVHGSGCNLKI-----------FG-----ELEKYL-EDYNCIL---LDLKGHGESKGQCPSTVYGYIDNVANFIT 75 (245)
T ss_dssp SCEEEEECCTTCCGGG-----------GT-----TGGGGC-TTSEEEE---ECCTTSTTCCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcccHHH-----------HH-----HHHHHH-hCCEEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 6899999996532211 11 122333 8999999 55567777653322 35566777777764
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEeccCCCCCCCCCCc-c---c-------------c-c--
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGF-Q---N-------------E-D-- 807 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~~~~~-~---~-------------~-~-- 807 (958)
+...+...+ ++.++|||+||.+++.++.+ +|+ ++++|+++|........... . . . .
T Consensus 76 ~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
T 3e0x_A 76 NSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNP 152 (245)
T ss_dssp HCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSH
T ss_pred hhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchH
Confidence 443333344 99999999999999999999 999 99999999876541110000 0 0 0 0
Q ss_pred -------------chhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 808 -------------RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 808 -------------~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
.............+....+.++++|+|+++|++|..+| ++.+.++++.++ .++++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~g 226 (245)
T 3e0x_A 153 LSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTL--VEYSEIIKKEVE----NSELKIFETGK 226 (245)
T ss_dssp HHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHSS----SEEEEEESSCG
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCC--HHHHHHHHHHcC----CceEEEeCCCC
Confidence 00001111123344556677889999999999999998 888888887764 37999999999
Q ss_pred ccCCCcccHHHHHHHHHHHH
Q 002164 875 HGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl 894 (958)
|.+. .++...+.+.+.+||
T Consensus 227 H~~~-~~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 227 HFLL-VVNAKGVAEEIKNFI 245 (245)
T ss_dssp GGHH-HHTHHHHHHHHHTTC
T ss_pred cceE-EecHHHHHHHHHhhC
Confidence 9863 344555556665553
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=153.59 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=136.6
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
..+|.+++...+ + + .|.||++||.+... ..| ......|+++||.|++ .|.+|
T Consensus 9 ~~~g~~l~y~~~---g-----~--g~pvvllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi~---~D~~G 60 (277)
T 1brt_A 9 NSTSIDLYYEDH---G-----T--GQPVVLIHGFPLSG-----------HSW----ERQSAALLDAGYRVIT---YDRRG 60 (277)
T ss_dssp TTEEEEEEEEEE---C-----S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECCTT
T ss_pred cCCCcEEEEEEc---C-----C--CCeEEEECCCCCcH-----------HHH----HHHHHHHhhCCCEEEE---eCCCC
Confidence 346777765544 1 1 13388899964221 111 2345678889999999 66678
Q ss_pred CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCC---
Q 002164 726 EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT--- 799 (958)
Q Consensus 726 ~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~--- 799 (958)
+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|+ +++++|+.++.......
T Consensus 61 ~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~ 134 (277)
T 1brt_A 61 FGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDD 134 (277)
T ss_dssp STTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTT
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCcccccccc
Confidence 88875432 23456677888877765 23589999999999999999999998 99999999874321110
Q ss_pred -CCC-cccc-----------cc-h--------hhh---------cH---HHHH------------------hcCcccccC
Q 002164 800 -PFG-FQNE-----------DR-T--------LWE---------AT---STYV------------------EMSPFMSAN 827 (958)
Q Consensus 800 -~~~-~~~~-----------~~-~--------~~~---------~~---~~~~------------------~~sp~~~~~ 827 (958)
+.+ .... .. . .+. .. ..+. ..+....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (277)
T 1brt_A 135 NPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIP 214 (277)
T ss_dssp BTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGG
T ss_pred CccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcc
Confidence 000 0000 00 0 000 00 0000 112223456
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++++|+|+++|++|..+| +..+ .++.+.+.. .+++++|++||... .+....+.+.+.+||.
T Consensus 215 ~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 215 RIDVPALILHGTGDRTLP--IENTARVFHKALPS----AEYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp GCCSCEEEEEETTCSSSC--GGGTHHHHHHHCTT----SEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred cCCCCeEEEecCCCccCC--hHHHHHHHHHHCCC----CcEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 789999999999999998 7877 777776543 58899999999864 4566778888899885
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-13 Score=149.61 Aligned_cols=266 Identities=12% Similarity=0.108 Sum_probs=171.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|++.+ + ...+.+.. ...
T Consensus 15 ~V~~~~fsp~~~~l~s~~~d---------------------------------g~v~lWd~~~-~--~~~~~~~~--~~~ 56 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYS---------------------------------GRVELWNYET-Q--VEVRSIQV--TET 56 (304)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CSS
T ss_pred ceEEEEECCCCCEEEEEcCC---------------------------------CcEEEEECCC-C--ceeEEeec--cCC
Confidence 56789999999999988875 5789999854 1 22344433 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+|||++|+.... ...|.+|++.+++........... +..++|+||++.|+...
T Consensus 57 ~v~~~~~~~~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs------- 116 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD---------DFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGS------- 116 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEEEeCCCCEEEEECC---------CCEEEEEECCCCcEEEEEeCCCCc----EEEEEEcCCCCEEEEEC-------
Confidence 6888999999999988652 568999999988765443333322 77899999999988662
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eee-ecCCC-ccccccccCC-CCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVK-EIGPP-AVYTSLDPSP-DEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~-~l~~~-~~~~~~~~Sp-DGk 344 (958)
....|.++++ ++ ... .+... ..+..++|+| |++
T Consensus 117 ------------------------------------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 117 ------------------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp ------------------------------------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred ------------------------------------------CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 1234667777 55 333 33333 6688999999 677
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeec--CCCCceEEEEecc
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS--DKPSTLYWAETQD 421 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp--DG~~l~~~~~~~~ 421 (958)
.|+..+. ++.|.+||+..... ..+.... ...+..+.|+| |++.++..
T Consensus 155 ~l~sgs~-------------D~~v~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~----- 204 (304)
T 2ynn_A 155 TFASGCL-------------DRTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITA----- 204 (304)
T ss_dssp EEEEEET-------------TSEEEEEETTCSSCSEEEECCC------------TTCEEEEEECCSTTCCEEEEE-----
T ss_pred EEEEEeC-------------CCeEEEEECCCCCccceeccCC------------cCcEEEEEEEEcCCCCEEEEE-----
Confidence 7776663 34899999974332 2222110 12334567776 56655542
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 501 (958)
+..+.|.+||+ ..+.....+..+...+..+.|+|+++.|+..+.++. .+|| ++.++ +.......
T Consensus 205 --------s~D~~i~iWd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~--i~iW--d~~~~--~~~~~~~~ 268 (304)
T 2ynn_A 205 --------SDDLTIKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT--LKIW--NSSTY--KVEKTLNV 268 (304)
T ss_dssp --------ETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEE--ETTTC--CEEEEECC
T ss_pred --------cCCCeEEEEeC--CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe--EEEE--ECCCC--ceeeeccC
Confidence 45668999996 233334455556667788999999998887765443 4455 55553 23333333
Q ss_pred CCccccCCCCCCceEeccCCce--EEEE
Q 002164 502 SSEDVYSDPGSPMMRRTSTGTY--VIAK 527 (958)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~--l~~~ 527 (958)
....++. ++|+|+|.. ++..
T Consensus 269 ~~~~~~~------~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 269 GLERSWC------IATHPTGRKNYIASG 290 (304)
T ss_dssp SSSSEEE------EEECTTCGGGCEEEE
T ss_pred CCccEEE------EEECCCCCceEEEEe
Confidence 3333333 678888863 4444
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-14 Score=160.44 Aligned_cols=294 Identities=13% Similarity=0.112 Sum_probs=177.0
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
.+..++|+| +++.||..+.+ +.|.||++.. + .....++...+.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~d---------------------------------g~i~lWd~~~-~--~~~~~~~~~gH~ 164 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKG---------------------------------GDIMLWNFGI-K--DKPTFIKGIGAG 164 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETT---------------------------------SCEEEECSSC-C--SCCEEECCCSSS
T ss_pred CEEEEEEeCCCCCEEEEEeCC---------------------------------CEEEEEECCC-C--CceeEEEccCCC
Confidence 366788999 56677776664 5899999854 1 122222212234
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
..+....|+| ||++|+... ....|.+||++++..+.+...... ...+..++|+|||++|+...
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~----- 228 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASS---------MEGTTRLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGD----- 228 (435)
T ss_dssp CCCCEEEECSSCTTEEEEEC---------SSSCEEEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEEC-----
T ss_pred CCEEEEEEeCCCCCEEEEEe---------CCCEEEEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEe-----
Confidence 5799999999 677776643 245788889988766555433221 11245789999999998761
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcE
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~ 345 (958)
..+.|.++++ +.....+... ..+..++|+|+++.
T Consensus 229 --------------------------------------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 229 --------------------------------------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp --------------------------------------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSS
T ss_pred --------------------------------------------CCCcEeeeccCcceeEEEecccceEEeeeecCCCce
Confidence 2245778888 4455555444 67889999999997
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++++... ++.|.+||+...... .+... .++...+..+.|+|||+.|+..
T Consensus 265 ~~~s~s~------------d~~v~iwd~~~~~~~~~~~~~----------~~h~~~v~~~~~spdg~~l~s~-------- 314 (435)
T 4e54_B 265 FLATASV------------DQTVKIWDLRQVRGKASFLYS----------LPHRHPVNAACFSPDGARLLTT-------- 314 (435)
T ss_dssp EEEEEET------------TSBCCEEETTTCCSSSCCSBC----------CBCSSCEEECCBCTTSSEEEEE--------
T ss_pred EEEEecC------------cceeeEEecccccccceEEEe----------eeccccccceeECCCCCeeEEE--------
Confidence 7666533 347899998753321 11111 1122455788999999987763
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeecc------ccCceeeecCCceEEEEEeccc--------cceEEEEEcCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYKT--------RRTRTWVISPGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~~--------~~~~l~~~~~~~ 490 (958)
+..+.|.+|++ ..+.....+..... ......|+|++..++.....++ ....|.+++..+
T Consensus 315 -----~~D~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 315 -----DQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp -----ESSSCEEEEES--SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred -----cCCCEEEEEEC--CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 45667899996 33444444422211 1234678888888877653221 112366667666
Q ss_pred CCCCcE-EEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 491 KDVAPR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 491 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
+ +.. .+.......+.. ...|||||++|+... + ..|++||+++|+.+
T Consensus 388 g--~~~~~l~~~~~~~v~s-----~~~fspdg~~lasg~-d---------------------~~i~iW~~~~gk~r 434 (435)
T 4e54_B 388 G--KMMCQLYDPESSGISS-----LNEFNPMGDTLASAM-G---------------------YHILIWSQQEARTR 434 (435)
T ss_dssp C--CEEEEECCSSCCCCCC-----EEEECTTSSCEEEEC-S---------------------SEEEECCCC-----
T ss_pred C--cEEEEEeCCCCCcEEE-----EEEECCCCCEEEEEc-C---------------------CcEEEEECCcCeee
Confidence 4 222 222233332222 136999999887653 1 15899999988765
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-15 Score=158.32 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=134.6
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+...++. +|..++.+.+-|. ..|+||++||++.... .|. ..+..|++ ||.|+++
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~~--------~~~~vv~lHG~~~~~~-----------~~~----~~~~~L~~-g~~vi~~- 99 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGPE--------DAPPLVLLHGALFSST-----------MWY----PNIADWSS-KYRTYAV- 99 (306)
T ss_dssp EEEEECC-TTEEEEEEEESCT--------TSCEEEEECCTTTCGG-----------GGT----TTHHHHHH-HSEEEEE-
T ss_pred ceEEEec-CCceEEEEeeCCC--------CCCeEEEECCCCCCHH-----------HHH----HHHHHHhc-CCEEEEe-
Confidence 4444554 5567766654321 2578999999752211 111 12445666 9999994
Q ss_pred CCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 720 TTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
+.+|+ |.+... ........+|+.++++.+ +.+++.|+|||+||.+++.+|.++|++++++|+++|....
T Consensus 100 --D~~G~gG~s~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (306)
T 2r11_A 100 --DIIGDKNKSIPENVSGTRTDYANWLLDVFDNL------GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171 (306)
T ss_dssp --CCTTSSSSCEECSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred --cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence 45566 555432 223455566666665543 3368999999999999999999999999999999987653
Q ss_pred CCCCCCcc-----cc------------------cchhhhcHHHHH------------------hcCcccccCCCCCCEEE
Q 002164 797 TLTPFGFQ-----NE------------------DRTLWEATSTYV------------------EMSPFMSANKLKKPILL 835 (958)
Q Consensus 797 ~~~~~~~~-----~~------------------~~~~~~~~~~~~------------------~~sp~~~~~~~~~P~Li 835 (958)
........ .. ............ .......+.++++|+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 251 (306)
T 2r11_A 172 LPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILL 251 (306)
T ss_dssp SCCCHHHHHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEE
Confidence 21110000 00 000000000000 00112234567899999
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|++|..+| +..+.++++.+. ..++++++|++||.+. .+....+.+.|.+||+
T Consensus 252 i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 252 LLGEHEVIYD--PHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp EEETTCCSSC--HHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred EEeCCCcccC--HHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 9999999998 887776665432 2468999999999863 4556677788888874
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=152.93 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=131.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|+||++||.+... ..| ......| +++|.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 15 ~~~vvllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 75 (268)
T 3v48_A 15 APVVVLISGLGGSG-----------SYW----LPQLAVL-EQEYQVVC---YDQRGTGNNPDTLAEDYSIAQMAAELHQA 75 (268)
T ss_dssp CCEEEEECCTTCCG-----------GGG----HHHHHHH-HTTSEEEE---CCCTTBTTBCCCCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccH-----------HHH----HHHHHHH-hhcCeEEE---ECCCCCCCCCCCccccCCHHHHHHHHHHH
Confidence 58899999964211 111 1223344 56799999 6777888875431 2345556666665
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CCccc--------------c-----
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FGFQN--------------E----- 806 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~~~~--------------~----- 806 (958)
++.+ +.+++.|+||||||.+++.+|.++|++++++|++++........ ..+.. .
T Consensus 76 l~~l------~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T 3v48_A 76 LVAA------GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLF 149 (268)
T ss_dssp HHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc------CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhh
Confidence 5442 23589999999999999999999999999999988743211000 00000 0
Q ss_pred -cchhhh-------------------c-------HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH
Q 002164 807 -DRTLWE-------------------A-------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (958)
Q Consensus 807 -~~~~~~-------------------~-------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (958)
....|. . ...+...+....+.++++|+|+++|++|..+| +..++++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~l~~~~p 227 (268)
T 3v48_A 150 LYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVP--TACSSELHAALP 227 (268)
T ss_dssp HSCHHHHHTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred cCchhhhhcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccC--HHHHHHHHHhCC
Confidence 000000 0 00111222334567889999999999999998 888888887764
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 860 ~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
. .+++++|++||.. ..+....+.+.+.+||.+.+.
T Consensus 228 ~----~~~~~~~~~GH~~-~~e~p~~~~~~i~~fl~~~~~ 262 (268)
T 3v48_A 228 D----SQKMVMPYGGHAC-NVTDPETFNALLLNGLASLLH 262 (268)
T ss_dssp S----EEEEEESSCCTTH-HHHCHHHHHHHHHHHHHHHHH
T ss_pred c----CeEEEeCCCCcch-hhcCHHHHHHHHHHHHHHhcc
Confidence 3 6899999999986 367778889999999987653
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=155.31 Aligned_cols=196 Identities=15% Similarity=0.093 Sum_probs=129.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc----hh--hHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----DR--FVEQLVACA 743 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~----~~--~~~~~~~D~ 743 (958)
.|+||++||.+.... .|. .....|++ ||.|++ .+.+|+|.+... .. ......+|+
T Consensus 20 ~p~vv~~HG~~~~~~-----------~~~----~~~~~l~~-g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 80 (269)
T 4dnp_A 20 ERVLVLAHGFGTDQS-----------AWN----RILPFFLR-DYRVVL---YDLVCAGSVNPDFFDFRRYTTLDPYVDDL 80 (269)
T ss_dssp SSEEEEECCTTCCGG-----------GGT----TTGGGGTT-TCEEEE---ECCTTSTTSCGGGCCTTTCSSSHHHHHHH
T ss_pred CCEEEEEeCCCCcHH-----------HHH----HHHHHHhC-CcEEEE---EcCCCCCCCCCCCCCccccCcHHHHHHHH
Confidence 589999999643221 111 12334555 999999 556677777441 11 245566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC---ccccc-----------ch
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG---FQNED-----------RT 809 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~---~~~~~-----------~~ 809 (958)
.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++.......... +.... ..
T Consensus 81 ~~~~~~~------~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
T 4dnp_A 81 LHILDAL------GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYE 154 (269)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhc------CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHH
Confidence 6666553 3458999999999999999999999999999999986432111100 00000 00
Q ss_pred hh-----------------h---------c-------HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 810 LW-----------------E---------A-------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 810 ~~-----------------~---------~-------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
.| . . ...+...+....+.++++|+|+++|++|..+| +..+.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~ 232 (269)
T 4dnp_A 155 AWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVP--ASVATYLKN 232 (269)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBC--HHHHHHHHH
T ss_pred HHHHHhhhhhccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccC--HHHHHHHHH
Confidence 00 0 0 00111223445677889999999999999998 888888887
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+.. .++++++|+++|... .++...+.+.+.+||.+
T Consensus 233 ~~~~---~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 233 HLGG---KNTVHWLNIEGHLPH-LSAPTLLAQELRRALSH 268 (269)
T ss_dssp HSSS---CEEEEEEEEESSCHH-HHCHHHHHHHHHHHHC-
T ss_pred hCCC---CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHhh
Confidence 7644 279999999999864 45567777788888764
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=156.77 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=127.8
Q ss_pred CcEEEEEEEeCC-CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcE
Q 002164 637 LQKELIKYQRKD-GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFA 714 (958)
Q Consensus 637 ~~~~~~~~~~~d-g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~ 714 (958)
...+.+++.+.. |..+..++|+|+++++.+ ++|+|+++||+.. +..........+++ .+.+
T Consensus 11 ~~~~~~~~~S~~~~~~~~~~vylP~~y~~~~--~yPvly~l~G~~~---------------~~~~~~~~~~~l~~~~~~i 73 (278)
T 2gzs_A 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAV---------------MDRLDDELLKQLSEKTPPV 73 (278)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHH---------------HHHCCHHHHHHHTTSCCCE
T ss_pred CceEEEEEEcCCCCceEEEEEECCCCCCCCC--CCCEEEEeeChhH---------------HHHHHHHHHHHhccCCCeE
Confidence 356778888765 678999999999987643 5999877777421 00001123345555 6777
Q ss_pred EEEcCCCCCCC-----CCCcccch-----------------hhHHHHHHHH-HHHHHHHHHcCCCCCCcEEEEEeChHHH
Q 002164 715 ILGGPTTPIIG-----EGDEEAND-----------------RFVEQLVACA-EAAVEEVVRRGVAHPSKIAVGGHSYGAF 771 (958)
Q Consensus 715 vl~~~~~~~~G-----~G~~~~~~-----------------~~~~~~~~D~-~~av~~l~~~~~~d~~~i~l~G~S~GG~ 771 (958)
|+.+++.+... ++....+. ........-+ .+.+.++.++..+|++|++|+|+||||+
T Consensus 74 vV~v~~~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~ 153 (278)
T 2gzs_A 74 IVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGL 153 (278)
T ss_dssp EEEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHH
T ss_pred EEEEcCCCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHH
Confidence 77644421100 00000000 0011111111 1334455556668888999999999999
Q ss_pred HHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCC------
Q 002164 772 MTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG------ 845 (958)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~------ 845 (958)
+|++++.+ |++|+++++.+|...+. ...... ......+. ..-..|+++.||+.|..++
T Consensus 154 ~a~~~~~~-p~~f~~~~~~s~~~~~~---------~~~~~~---~~~~~~~~---~~~~~~i~l~~G~~d~~~~~~~~~~ 217 (278)
T 2gzs_A 154 FVLDSWLS-SSYFRSYYSASPSLGRG---------YDALLS---RVTAVEPL---QFCTKHLAIMEGSATQGDNRETHAV 217 (278)
T ss_dssp HHHHHHHH-CSSCSEEEEESGGGSTT---------HHHHHH---HHHTSCTT---TTTTCEEEEEECCC-----------
T ss_pred HHHHHHhC-ccccCeEEEeCcchhcC---------cchHHH---HHHHhhcc---CCCCCcEEEEecCccccccccchhh
Confidence 99999999 99999999999863211 000000 01111110 1124689999999997631
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 846 TLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 846 ~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
.+..++++++++|+..|+++++.++||++|..
T Consensus 218 ~~~~~~~~~~~~L~~~g~~~~~~~~~g~~H~~ 249 (278)
T 2gzs_A 218 GVLSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred hhHHHHHHHHHHHHcCCCeeEEEEcCCCCccc
Confidence 01688999999999999999999999999985
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=158.76 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=140.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCC--CCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGS--PNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
+|..++...+-+++ .. ..|+||++||.+............+ ...|..... ....|+++||.|+++|.+|. +
T Consensus 29 ~g~~l~y~~~g~~~--~~---~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~g~~vi~~D~~G~-~ 101 (366)
T 2pl5_A 29 SPVVIAYETYGTLS--SS---KNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIG-PGKSFDTNQYFIICSNVIGG-C 101 (366)
T ss_dssp SSEEEEEEEEECCC--TT---SCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEE-TTSSEETTTCEEEEECCTTC-S
T ss_pred cCceeeEEeccCcC--CC---CCceEEEecccCCcccccccccccccccchHHhhcC-CcccccccccEEEEecCCCc-c
Confidence 45567666665432 11 1578999999753322000000000 001111000 00134578999999555431 0
Q ss_pred CCCcccc---------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 726 EGDEEAN---------------DRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 726 ~G~~~~~---------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
+|.+... ........+|+.++++.+ +.+++ .|+||||||.+++.+|.++|++++++|+
T Consensus 102 ~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl 175 (366)
T 2pl5_A 102 KGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL------GIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIV 175 (366)
T ss_dssp SSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEE
T ss_pred cCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc------CCceEEEEEEeCccHHHHHHHHHhCcHhhhheeE
Confidence 5544321 113455566666665543 34688 7999999999999999999999999999
Q ss_pred eccCCCCCCCC----------------CC---c--------------------cc----------ccc-----------h
Q 002164 790 RSGAYNRTLTP----------------FG---F--------------------QN----------EDR-----------T 809 (958)
Q Consensus 790 ~~~~~~~~~~~----------------~~---~--------------------~~----------~~~-----------~ 809 (958)
+++........ +. + .. ... .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T 2pl5_A 176 MASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVG 255 (366)
T ss_dssp ESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSC
T ss_pred eccCccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHH
Confidence 98865421000 00 0 00 000 0
Q ss_pred hhh-----------cH-------HHHHhcCc------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 002164 810 LWE-----------AT-------STYVEMSP------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (958)
Q Consensus 810 ~~~-----------~~-------~~~~~~sp------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (958)
.+. .. ..+...+. ...+.++++|+|+++|++|..+| ++.++++++.+...+..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~~ 333 (366)
T 2pl5_A 256 SYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP--PAQSREIVKSLEAADKRV 333 (366)
T ss_dssp GGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccC--HHHHHHHHHHhhhcccCe
Confidence 000 00 11111111 12567889999999999999999 999999999999776678
Q ss_pred EEEEe-CCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 866 RLVIL-PFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 866 ~~~~~-p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+++++ +++||... .+....+.+.+.+||.++
T Consensus 334 ~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 334 FYVELQSGEGHDSF-LLKNPKQIEILKGFLENP 365 (366)
T ss_dssp EEEEECCCBSSGGG-GSCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCCcchh-hcChhHHHHHHHHHHccC
Confidence 99999 89999875 344567888888998753
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=158.54 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=131.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----h--hHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----R--FVEQLVACA 743 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~----~--~~~~~~~D~ 743 (958)
.|+||++||.+.... .|. ..+..|++ ||.|++ .+.+|+|.+.... . ......+|+
T Consensus 28 ~~~vv~lHG~~~~~~-----------~~~----~~~~~l~~-g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 88 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQN-----------MWR----FMLPELEK-QFTVIV---FDYVGSGQSDLESFSTKRYSSLEGYAKDV 88 (282)
T ss_dssp SCEEEEECCTTCCGG-----------GGT----TTHHHHHT-TSEEEE---CCCTTSTTSCGGGCCTTGGGSHHHHHHHH
T ss_pred CCeEEEECCCCCCcc-----------hHH----HHHHHHhc-CceEEE---EecCCCCCCCCCCCCccccccHHHHHHHH
Confidence 388999999642211 111 22445665 999999 6666788775432 1 245556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc-c--------------c
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-D--------------R 808 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~-~--------------~ 808 (958)
.++++.+ +.+++.++|||+||.+++.++.++|++++++|+++|..........+... . .
T Consensus 89 ~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T 3qvm_A 89 EEILVAL------DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNY 162 (282)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcch
Confidence 6665553 34689999999999999999999999999999999864321110000000 0 0
Q ss_pred hhh------------------h---------cH-------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 809 TLW------------------E---------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 809 ~~~------------------~---------~~-------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
..| . .+ ..+...+....+.++++|+|+++|++|..+| +..+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~ 240 (282)
T 3qvm_A 163 IGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLAS--PEVGQYM 240 (282)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCC--HHHHHHH
T ss_pred hhHHHHHHhhccCCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCC--HHHHHHH
Confidence 000 0 00 0011123335567889999999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.+.+. ..+++++|+++|.+. .+....+.+.+.+||.+..
T Consensus 241 ~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 241 AENIP----NSQLELIQAEGHCLH-MTDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHC-
T ss_pred HHhCC----CCcEEEecCCCCccc-ccCHHHHHHHHHHHHHhcC
Confidence 77664 369999999999874 4556778888999998754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-13 Score=151.05 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=127.7
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..++|||||++|++.+.. .++.|.+||+.+++......+. ..+..++|||||+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~-----------~d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSK-----------VPAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV 190 (365)
T ss_dssp CEEEEEECTTSSCEEEEESC-----------SSCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE
T ss_pred CEEEEEEcCCCCEEEEEECC-----------CCCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce
Confidence 34578999999999887632 2458999999976554322221 34578999999998
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE--eeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
++.. ..+.+.+|+. ..+....... .....+..++|+|||+.++..+..+.....++.++...
T Consensus 191 l~s~--------------s~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 191 VAYI--------------TGSSLEVIST--VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp EEEE--------------CSSCEEEEET--TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred EEec--------------cceeEEEEEe--ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 8773 2344566663 3443332222 23445678999999999998876665445677766655
Q ss_pred CCCCcEE--EeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 491 KDVAPRI--LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 491 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
....... ........+.. ++|||||++|+....+ ..|.+||+.+++...-.
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~------~~~Spdg~~lasgs~D---------------------~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITS------MDVDMKGELAVLASND---------------------NSIALVKLKDLSMSKIF 307 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEE------EEECTTSCEEEEEETT---------------------SCEEEEETTTTEEEEEE
T ss_pred ceecceeeeeecCCCCCeEe------EEECCCCCceEEEcCC---------------------CEEEEEECCCCcEEEEe
Confidence 3111111 12222233333 7899999999887632 24999999988765432
Q ss_pred -cCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 569 -ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 569 -~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
..... .++ ..+|||||+.|+-... ...+.+++++.
T Consensus 308 ~~gH~~----~V~-------~v~fSpdg~~laS~S~----D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 KQAHSF----AIT-------EVTISPDSTYVASVSA----ANTIHIIKLPL 343 (365)
T ss_dssp TTSSSS----CEE-------EEEECTTSCEEEEEET----TSEEEEEECCT
T ss_pred cCcccC----CEE-------EEEECCCCCEEEEEeC----CCeEEEEEcCC
Confidence 32211 122 2579999987654322 24577888754
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=172.62 Aligned_cols=221 Identities=14% Similarity=0.044 Sum_probs=148.3
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+...++..||.+++....- ..|+||++||++.... .| ...+..|+++||.|++
T Consensus 237 ~~~~~~~~~dg~~l~~~~~g----------~~p~vv~~HG~~~~~~-----------~~----~~~~~~l~~~G~~v~~- 290 (555)
T 3i28_A 237 MSHGYVTVKPRVRLHFVELG----------SGPAVCLCHGFPESWY-----------SW----RYQIPALAQAGYRVLA- 290 (555)
T ss_dssp SEEEEEEEETTEEEEEEEEC----------SSSEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE-
T ss_pred cceeEEEeCCCcEEEEEEcC----------CCCEEEEEeCCCCchh-----------HH----HHHHHHHHhCCCEEEE-
Confidence 45556677799999865541 2588999999752211 11 2346678899999999
Q ss_pred CCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 719 PTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
.+.+|+|.+.... ........|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++..
T Consensus 291 --~D~~G~G~S~~~~~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 291 --MDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp --ECCTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ecCCCCCCCCCCCCcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 5556777775432 12455667777777665 34589999999999999999999999999999988754
Q ss_pred CCCCCCCCcc--------------------------------------cc-------------------------c-chh
Q 002164 795 NRTLTPFGFQ--------------------------------------NE-------------------------D-RTL 810 (958)
Q Consensus 795 ~~~~~~~~~~--------------------------------------~~-------------------------~-~~~ 810 (958)
.......... .. . ...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (555)
T 3i28_A 363 IPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMV 442 (555)
T ss_dssp CCCCTTSCHHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTC
T ss_pred CCCCcccchHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCcccccccccc
Confidence 3211100000 00 0 000
Q ss_pred -hhcHHHH----------------------HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEE
Q 002164 811 -WEATSTY----------------------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (958)
Q Consensus 811 -~~~~~~~----------------------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (958)
......+ ...+....+.++++|+|+++|++|..+| +..++++.+.+. .+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~----~~~~ 516 (555)
T 3i28_A 443 TEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWIP----HLKR 516 (555)
T ss_dssp CHHHHHHHHHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTCT----TCEE
T ss_pred CHHHHHHHHHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcC--HHHHHHHHhhCC----CceE
Confidence 0000000 0012223446789999999999999998 888887776654 3589
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 868 VILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 868 ~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++|++||... .+....+.+.+.+||.+....
T Consensus 517 ~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~~ 548 (555)
T 3i28_A 517 GHIEDCGHWTQ-MDKPTEVNQILIKWLDSDARN 548 (555)
T ss_dssp EEETTCCSCHH-HHSHHHHHHHHHHHHHHHTCC
T ss_pred EEeCCCCCCcc-hhCHHHHHHHHHHHHHhccCC
Confidence 99999999864 456678888999999988643
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=145.07 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=175.0
Q ss_pred ceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccc
Q 002164 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (958)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~ 193 (958)
--|+.||++|.|.... +. ..||..+. || ...++|+. ...
T Consensus 19 g~~~~~g~~iy~~n~~----------------------d~---------~~ly~~~~--dg--~~~~~l~~------~~~ 57 (302)
T 3s25_A 19 GLFCESDGEVFFSNTN----------------------DN---------GRLYAMNI--DG--SNIHKLSN------DTA 57 (302)
T ss_dssp TCEEEETTEEEEEEGG----------------------GT---------TEEEEEET--TS--CSCEEEEE------EEE
T ss_pred eEEEEeCCEEEEEeCC----------------------CC---------ceEEEEcC--CC--CCCEEccC------Cce
Confidence 3478999999998752 11 26777766 55 56677753 123
Q ss_pred eeecCCCCeEEEEEeeccccCC-----CCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSS-----SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
--+++||++|+|+......... .....||+++++|++.++|+... ...|+++|++|+|+...
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---------~~~~s~~g~~Iy~~~~~---- 124 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---------CIYASLIGNYIYYLHYD---- 124 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---------EEEEEEETTEEEEEEES----
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---------ccEEEEeCCEEEEEeec----
Confidence 4568999999999753310000 12568999999999888886432 23689999999998200
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcC-CeeeecCCCccccccccCCCCcEEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~l~~~~~~~~~~~SpDGk~l~ 347 (958)
.. ....||+++++ ...++|+.... ..++|||++|+
T Consensus 125 ---------------~~--------------------------~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy 160 (302)
T 3s25_A 125 ---------------TQ--------------------------TATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFY 160 (302)
T ss_dssp ---------------SS--------------------------SCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEE
T ss_pred ---------------CC--------------------------CCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEE
Confidence 00 34679999994 46777776522 56799999999
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
|+... ..+|++.+++|+..++|...+ ....++|+|+.|+|. +.
T Consensus 161 ~t~~g------------~~~Iy~~~l~g~~~~~l~~~~----------------~~~~~~P~g~~iy~t-~~-------- 203 (302)
T 3s25_A 161 YNNPK------------NGQLYRYDTASQSEALFYDCN----------------CYKPVVLDDTNVYYM-DV-------- 203 (302)
T ss_dssp EECTT------------TCCEEEEETTTTEEEEEECSC----------------EEEEEEEETTEEEEE-EG--------
T ss_pred EEeCC------------CceEEEEECCCCCEEEEeCCC----------------ccceeeecCCEEEEE-Ec--------
Confidence 99752 238999999998888775421 112356999999874 21
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcccc
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 507 (958)
.....|++.++ +|+..+.|+.... +.|+|+|++|+|...... ..|+.+++++. ..+.+.... .
T Consensus 204 --~~~~~I~~~~l---dG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~--~r~~l~~~~--~-- 266 (302)
T 3s25_A 204 --NRDNAIVHVNI---NNPNPVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT--GFKELAKGE--F-- 266 (302)
T ss_dssp --GGTTEEEEECS---SSCCCEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC--CCEEEEESC--E--
T ss_pred --CCCcEEEEEEC---CCCCeEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC--ccEEeeCCc--c--
Confidence 12247999985 8888888864332 669999999999865544 68999999995 334444321 1
Q ss_pred CCCCCCceEeccCCceEEEEe
Q 002164 508 SDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 508 ~~~~~~~~~~spdG~~l~~~~ 528 (958)
...++.|.+|+|..
T Consensus 267 -------~~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 -------CNINVTSQYVYFTD 280 (302)
T ss_dssp -------EEEEECSSEEEEEE
T ss_pred -------ceEEEeCCEEEEEE
Confidence 34677888888875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-13 Score=148.17 Aligned_cols=273 Identities=11% Similarity=0.099 Sum_probs=170.9
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+.++. ..+....|||||+.|+.... ...|.+|++.+++........... +..++|+|||+.|
T Consensus 48 ~~~l~gH~--~~v~~~~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l 112 (340)
T 1got_B 48 RRTLRGHL--AKIYAMHWGTDSRLLLSASQ---------DGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYV 112 (340)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEET---------TTEEEEEETTTCCEEEEEECSSSC----EEEEEECTTSSEE
T ss_pred heeecCCC--CceEEEEECCCCCEEEEEeC---------CCcEEEEECCCCCcceEeecCCcc----EEEEEECCCCCEE
Confidence 34454433 56889999999999887552 568999998887655443333322 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-----eeecCCC-
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-----VKEIGPP- 331 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-----~~~l~~~- 331 (958)
+... ....+.++++ +++ .+.+...
T Consensus 113 ~s~~-------------------------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~ 143 (340)
T 1got_B 113 ACGG-------------------------------------------------LDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp EEEE-------------------------------------------------TTCEEEEEETTTCSBSCEEEEEEECCS
T ss_pred EEEe-------------------------------------------------CCCeEEEEECccCCCcceeEEEecCCC
Confidence 8762 1233555665 331 1223333
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+....|+||++ |+..+. ++.+.+||+.++... .+..+ ...+..+.|+|||
T Consensus 144 ~~v~~~~~~~~~~-l~s~s~-------------d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~ 196 (340)
T 1got_B 144 GYLSCCRFLDDNQ-IVTSSG-------------DTTCALWDIETGQQTTTFTGH-------------TGDVMSLSLAPDT 196 (340)
T ss_dssp SCEEEEEEEETTE-EEEEET-------------TSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTS
T ss_pred ccEEEEEECCCCc-EEEEEC-------------CCcEEEEECCCCcEEEEEcCC-------------CCceEEEEECCCC
Confidence 5677788999887 444442 348999999865543 33222 1345789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+.++.. +..+.|.+||+ ..+.....+..+...+..+.|+|+|+.|+..+.++. .++| |+..
T Consensus 197 ~~l~sg-------------~~d~~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--v~iw--d~~~ 257 (340)
T 1got_B 197 RLFVSG-------------ACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--CRLF--DLRA 257 (340)
T ss_dssp SEEEEE-------------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEE--ETTT
T ss_pred CEEEEE-------------eCCCcEEEEEC--CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--EEEE--ECCC
Confidence 876652 44567899996 233334445556667888999999999887765443 4444 5544
Q ss_pred CCCCcEEEeccC--CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 491 KDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 491 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+ +........ ...+.. ++|+|||++|+....+ ..|.+||+.+++.....
T Consensus 258 ~--~~~~~~~~~~~~~~v~~------~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 258 D--QELMTYSHDNIICGITS------VSFSKSGRLLLAGYDD---------------------FNCNVWDALKADRAGVL 308 (340)
T ss_dssp T--EEEEEECCTTCCSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEE
T ss_pred C--cEEEEEccCCcccceEE------EEECCCCCEEEEECCC---------------------CeEEEEEcccCcEeeEe
Confidence 3 222222211 111222 7899999998877621 25999999887765544
Q ss_pred cCCcccccceeEeecCCCccccccccCCEEEEE
Q 002164 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTS 601 (958)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 601 (958)
..... .+. ..+|++||..++..
T Consensus 309 ~~h~~----~v~-------~~~~s~dg~~l~s~ 330 (340)
T 1got_B 309 AGHDN----RVS-------CLGVTDDGMAVATG 330 (340)
T ss_dssp ECCSS----CEE-------EEEECTTSSCEEEE
T ss_pred ecCCC----cEE-------EEEEcCCCCEEEEE
Confidence 33221 122 24688888766543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=168.07 Aligned_cols=264 Identities=9% Similarity=-0.017 Sum_probs=163.3
Q ss_pred cccceeec-CCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
....++|| |||++|||+.+.. ++...+||++++++| +. +... +......++|||||+.|+|+..+...
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~----G~~~~~l~v~dl~~g~~~--l~~~----~~~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS----GNEVYTIEFKRISDPSQT--IADK----VSGTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS----SSSCEEEEEEETTCTTCC--CCCC----EEEECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCC----CCceEEEEEEECCCCCEe--CCcc----ccCceeeEEEecCCCEEEEEEECCCC
Confidence 46779999 9999999988632 344567999999998 62 2110 11114589999999999988321100
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCC--C-ccccccccCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGP--P-AVYTSLDPSP 341 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~--~-~~~~~~~~Sp 341 (958)
...+||++++ ++. .+.+.. . .....+.|||
T Consensus 245 --------------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 245 --------------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp --------------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred --------------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 1247999999 653 234422 1 3345789999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eE--EEeccCCccccCcccccccccCcceeeeecC---CCCce
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSD---KPSTL 414 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD---G~~l~ 414 (958)
||++|++.+... ...+++++|++++ .. +.|+... ....|++| |+.|+
T Consensus 281 Dg~~l~~~~~~~----------~~~~l~~~d~~~~~~~~~~~~l~~~~----------------~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 281 DTNTLCIGSQSP----------ETAEVHLLDLRKGNAHNTLEIVRPRE----------------KGVRYDVQMHGTSHLV 334 (751)
T ss_dssp TSSEEEEEEECS----------SCEEEEEEESSSCTTCCCEEESSCCC----------------TTCCEEEEEETTTEEE
T ss_pred CCCEEEEEecCC----------CCceEEEEECCCCCCCceeEEeecCC----------------CCceEEEeeeeCCEEE
Confidence 999999998542 2358999999864 34 4444311 23446676 99888
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCC-CCceE-EEeeccccCceeeecCCceEEEEEeccccceEEEEEcC----
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP---- 488 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~-l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~---- 488 (958)
|.++.. + ..+..||++++ ++ +..+. +......+.-..|+++++.|++....++. .+|+++++
T Consensus 335 ~~t~~~-~-------a~~~~L~~~d~---~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~-~~l~~~dl~~~~ 402 (751)
T 2xe4_A 335 ILTNEG-G-------AVNHKLLIAPR---GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGL-TRIWTMMADSQD 402 (751)
T ss_dssp EEECTT-T-------CTTCEEEEEET---TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTE-EEEEEEECCTTT
T ss_pred EEeCCC-C-------CCCcEEEEEcC---CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCE-EEEEEEeccccc
Confidence 875432 0 23457999985 43 34444 44433333333466678889888776653 78999996
Q ss_pred ---CCCCCC-cEEEe-ccCCccccCCCCCCceEe----ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 489 ---GSKDVA-PRILF-DRSSEDVYSDPGSPMMRR----TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 489 ---~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~----spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
+++ + ...+. ..... ..+ +.+ ++|++.++|..... ...+.+|.+|+
T Consensus 403 ~~~~~g--~~~~~l~l~~~~~-~~~------~~~~~~~~~~~~~l~~~~ss~-----------------~~P~~~~~~d~ 456 (751)
T 2xe4_A 403 GVFKAG--TGLREVVMEEPIF-TVH------LVESQMLEYEEPTFRMEYSSL-----------------ATPNTWFDVSP 456 (751)
T ss_dssp SCCCTT--TCCEECCCCCSSC-EEE------ECGGGCCCTTCSCEEEEEEET-----------------TEEEEEEEECT
T ss_pred ccccCC--ccceEECCCCcee-EEE------eccCcccCCCCCEEEEEEeCC-----------------CCCCEEEEEEC
Confidence 342 2 23331 11110 001 222 46887777776321 12346999999
Q ss_pred CCCceEEEecCC
Q 002164 560 NTGSKERIWESD 571 (958)
Q Consensus 560 ~~g~~~~l~~~~ 571 (958)
.+++.+.|+...
T Consensus 457 ~~~~~~~l~~~~ 468 (751)
T 2xe4_A 457 QDHSRTAVKVRE 468 (751)
T ss_dssp TTCCEEEEEECC
T ss_pred CCCcEEEEeccc
Confidence 999888777543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=152.74 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=167.5
Q ss_pred CCCCceecCCC-CEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 110 PLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
.+..++||||| ++|+....+ +.|.+|++.. + .....+......
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~d---------------------------------g~i~iwd~~~-~--~~~~~~~~~~h~ 118 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKG---------------------------------GDIILWDYDV-Q--NKTSFIQGMGPG 118 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBT---------------------------------SCEEEEETTS-T--TCEEEECCCSTT
T ss_pred CEEEEEECCCCCCEEEEEcCC---------------------------------CeEEEEeCCC-c--ccceeeecCCcC
Confidence 46678999999 888887765 4789999964 2 122233211233
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
..+....|+| |++.|+... ....|.+|++.++....+..... ....+..++|+||++.|+...
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~----- 182 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSS---------IRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGD----- 182 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEE---------TTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEE-----
T ss_pred CceeEEEeCCCCCCEEEEEe---------CCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEEC-----
Confidence 5789999999 666666644 25688999998866655543332 112267899999999988761
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCc-
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEK- 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk- 344 (958)
....|.++++ ......+... ..+..++|+|||+
T Consensus 183 --------------------------------------------~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 183 --------------------------------------------STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp --------------------------------------------TTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred --------------------------------------------CCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCC
Confidence 2345778888 4455555544 7788999999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccC----ceEEEeccCCccccCcccccccccCcceeeeec-CCCCceEEEEe
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAET 419 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~----~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-DG~~l~~~~~~ 419 (958)
.|+..+. ++.|.+||+.. +....... ....+..+.|+| ||+.|+..
T Consensus 219 ~l~s~~~-------------d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~~l~~~--- 269 (383)
T 3ei3_B 219 LMATSSV-------------DATVKLWDLRNIKDKNSYIAEMP-------------HEKPVNAAYFNPTDSTKLLTT--- 269 (383)
T ss_dssp EEEEEET-------------TSEEEEEEGGGCCSTTCEEEEEE-------------CSSCEEEEEECTTTSCEEEEE---
T ss_pred EEEEEeC-------------CCEEEEEeCCCCCcccceEEEec-------------CCCceEEEEEcCCCCCEEEEE---
Confidence 5554442 34899999985 22221111 114557899999 99988763
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc------ccCceeeecCCceEEEEEecc-----ccceEEEEEcC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYESWYK-----TRRTRTWVISP 488 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~~~~~-----~~~~~l~~~~~ 488 (958)
+..+.|.+|++ ..+.....+..... ......|+|++..++.....+ .....|+++++
T Consensus 270 ----------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 270 ----------DQRNEIRVYSS--YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA 337 (383)
T ss_dssp ----------ESSSEEEEEET--TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEET
T ss_pred ----------cCCCcEEEEEC--CCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEec
Confidence 44568999996 33444455543221 111245666665554432110 01134666676
Q ss_pred CCCCCCcEEEeccCC-ccccCCCCCCceEeccCCceEEEEe
Q 002164 489 GSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.++ +......... ..... .++|+|||++|+...
T Consensus 338 ~~~--~~~~~l~~~~~~~~~~-----~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 338 NSG--GLVHQLRDPNAAGIIS-----LNKFSPTGDVLASGM 371 (383)
T ss_dssp TTC--CEEEEECBTTBCSCCC-----EEEECTTSSEEEEEE
T ss_pred CCC--ceeeeecCCCCCceEE-----EEEEecCccEEEEec
Confidence 664 2233332211 11111 148999999887764
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=156.88 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=132.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (958)
.|+||++||.+.... .| .......|+++||.|++ .+.+|+|.+..... ......+|+.++++
T Consensus 43 ~~~vv~lHG~~~~~~-----------~~---~~~~~~~l~~~g~~vi~---~D~~G~G~s~~~~~~~~~~~~~~~~~~l~ 105 (293)
T 3hss_A 43 GDPVVFIAGRGGAGR-----------TW---HPHQVPAFLAAGYRCIT---FDNRGIGATENAEGFTTQTMVADTAALIE 105 (293)
T ss_dssp SEEEEEECCTTCCGG-----------GG---TTTTHHHHHHTTEEEEE---ECCTTSGGGTTCCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchh-----------hc---chhhhhhHhhcCCeEEE---EccCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 578999999643211 11 11235578899999999 55567776654332 34566777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC--------------Ccccc--------
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF--------------GFQNE-------- 806 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~--------------~~~~~-------- 806 (958)
.+ +.+++.++|||+||.+++.++.++|++++++|++++......... .....
T Consensus 106 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
T 3hss_A 106 TL------DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLL 179 (293)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hc------CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHh
Confidence 65 335899999999999999999999999999999998654211000 00000
Q ss_pred ---cchhhhcH---H---------------H-------HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHH
Q 002164 807 ---DRTLWEAT---S---------------T-------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (958)
Q Consensus 807 ---~~~~~~~~---~---------------~-------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (958)
........ . . ....+....+.++++|+|+++|++|..+| +..+.++.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~ 257 (293)
T 3hss_A 180 ENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTP--PYLGREVADAL 257 (293)
T ss_dssp HHSCHHHHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHS
T ss_pred hhcccccccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCC--HHHHHHHHHHC
Confidence 00000000 0 0 00112233457789999999999999998 88888887776
Q ss_pred HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 859 ~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+ .++++++|++||... .++...+.+.+.+||++
T Consensus 258 ~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 P----NGRYLQIPDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp T----TEEEEEETTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred C----CceEEEeCCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 4 369999999999863 45567778888888875
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-14 Score=155.87 Aligned_cols=249 Identities=15% Similarity=0.137 Sum_probs=150.6
Q ss_pred cEEEEEEEeCC--Ce--EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcc--cCCcccCCCC-CC--C-CcCcHHHHH
Q 002164 638 QKELIKYQRKD--GV--QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD--AAGQVRGSPN-EF--P-RIGSTSVLL 707 (958)
Q Consensus 638 ~~~~~~~~~~d--g~--~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~--~~~~~~~~~~-~~--~-~~~~~~~~~ 707 (958)
...++.|.+.| |. ...+.++.|.+.. .+.|+|.|.||....... +......+.. .. . .+.......
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~----~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA----SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCC----SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCC----CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 55677776654 44 3889999998732 248999999995321100 0000000000 00 0 111133556
Q ss_pred H-HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----CC
Q 002164 708 W-LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----PH 782 (958)
Q Consensus 708 l-a~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p~ 782 (958)
| +++||+|+. .|+.|.|............+.|..+++..+. +.-...+++++|||+||..+++++... |+
T Consensus 150 ~~l~~G~~Vv~---~Dy~G~G~~y~~~~~~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~yape 224 (462)
T 3guu_A 150 WALQQGYYVVS---SDHEGFKAAFIAGYEEGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAESYAPE 224 (462)
T ss_dssp HHHHTTCEEEE---ECTTTTTTCTTCHHHHHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCEEEE---ecCCCCCCcccCCcchhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChhhcCc
Confidence 7 999999999 5556666654333222233334444443332 222247999999999999999988754 33
Q ss_pred -ceeEEEEeccCCCCCCC-------CC---------C----c-----------ccc----------c-------------
Q 002164 783 -LFCCGIARSGAYNRTLT-------PF---------G----F-----------QNE----------D------------- 807 (958)
Q Consensus 783 -~~~a~v~~~~~~~~~~~-------~~---------~----~-----------~~~----------~------------- 807 (958)
.++++++.++++|.... .+ + + ... .
T Consensus 225 l~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~ 304 (462)
T 3guu_A 225 LNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPF 304 (462)
T ss_dssp SEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTT
T ss_pred cceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhcc
Confidence 58888888876552100 00 0 0 000 0
Q ss_pred ---------chhhhcH---HHHHhcCccc-----ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 002164 808 ---------RTLWEAT---STYVEMSPFM-----SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (958)
Q Consensus 808 ---------~~~~~~~---~~~~~~sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (958)
..+...+ +.+.+..... ...+.++|+||+||.+|.+|| +.++++++++++..|.++++..|
T Consensus 305 ~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP--~~~s~~l~~~l~~~G~~V~~~~y 382 (462)
T 3guu_A 305 LNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVP--YQPAATYVKEQCAKGANINFSPY 382 (462)
T ss_dssp CCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHcCCCeEEEEE
Confidence 0000000 1111111100 123567899999999999999 99999999999999999999999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 871 PFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 871 p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
++++|..... ..+..+++||.+++.+.
T Consensus 383 ~~~~H~~~~~----~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 383 PIAEHLTAEI----FGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp SSCCHHHHHH----HTHHHHHHHHHHHHHTC
T ss_pred CcCCccCchh----hhHHHHHHHHHHHhCCC
Confidence 9999987422 23678899999999764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-13 Score=147.34 Aligned_cols=275 Identities=11% Similarity=0.031 Sum_probs=169.4
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|+++|+.+++.......+... .....++|+|||+.++++..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~---------------------------------- 53 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVN---------------------------------- 53 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEET----------------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeC----------------------------------
Confidence 568999999988776544433310 00458999999988887610
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCc------cccccccCCCCcEEEEEeecCCccccccCCC--CCce
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILISSIHRPYSFIVPCGR--FPRQ 367 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~------~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~--~~~~ 367 (958)
....|+++++ +|+.. .+.... ....++|||||++|++....... .+... ..+.
T Consensus 54 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~ 116 (337)
T 1pby_B 54 --------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL---ELTHFEVQPTR 116 (337)
T ss_dssp --------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE---CSSCEEECCCE
T ss_pred --------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccc---ccccccccCce
Confidence 2246889998 77543 333222 56788999999999988532100 00000 1358
Q ss_pred eEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC
Q 002164 368 VGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (958)
Q Consensus 368 i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 447 (958)
|++||+++++........ ..+..+.|+|||+.+++. .+.|+++++ .+++
T Consensus 117 i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~---------------~~~i~~~d~---~~~~ 165 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAP-------------RQITMLAWARDGSKLYGL---------------GRDLHVMDP---EAGT 165 (337)
T ss_dssp EEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSCEEEE---------------SSSEEEEET---TTTE
T ss_pred EEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCEEEEe---------------CCeEEEEEC---CCCc
Confidence 999999876544322211 234678899999998873 246899995 4444
Q ss_pred ceEEEeeccccCceeeecCCceEEEEEecccc--------------------ceEEEEEcCCCCCCCcEEE-eccCCccc
Q 002164 448 PEILHKLDLRYGGISWCDDSLALVYESWYKTR--------------------RTRTWVISPGSKDVAPRIL-FDRSSEDV 506 (958)
Q Consensus 448 ~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~--------------------~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 506 (958)
.............+.|+|||+.|++....... ...|+++++.++. ...+ ........
T Consensus 166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~ 243 (337)
T 1pby_B 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMDVFY 243 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEEEEECSSCE
T ss_pred EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC--ceEeecCCCCCce
Confidence 33322222222456899999988665422211 0157888988753 2211 11111111
Q ss_pred cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCC
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (958)
.+ +.|+|||++|+... ..|++||+++++.......... +
T Consensus 244 ~~------~~~s~dg~~l~~~~-----------------------~~v~~~d~~~~~~~~~~~~~~~-----~------- 282 (337)
T 1pby_B 244 FS------TAVNPAKTRAFGAY-----------------------NVLESFDLEKNASIKRVPLPHS-----Y------- 282 (337)
T ss_dssp EE------EEECTTSSEEEEEE-----------------------SEEEEEETTTTEEEEEEECSSC-----C-------
T ss_pred ee------EEECCCCCEEEEeC-----------------------CeEEEEECCCCcCcceecCCCc-----e-------
Confidence 11 78999999887662 1599999998877655443321 1
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 587 ~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
...+|++||+.+++.. ....++++++.+++...
T Consensus 283 ~~~~~s~dg~~l~~~~----~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGG----ALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CEEEECTTSCEEEEES----BSSEEEEEETTTCCEEE
T ss_pred eeEEECCCCCEEEEEc----CCCcEEEEECcCCcEEE
Confidence 1357899999777752 24679999998887554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=151.90 Aligned_cols=253 Identities=13% Similarity=0.137 Sum_probs=156.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc--------------ccccccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--------------LNAIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~--------------~~~~~~~~~wspD 254 (958)
..+...+|||||++||... ...+.+|++.+|+........... ....+..++|+||
T Consensus 65 ~~V~~v~fspdg~~la~g~----------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CEEEEEEECCCCCEEEEEc----------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 4688899999999998843 235677788777654322111100 0011568899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~- 331 (958)
|+.|+... ....|.++++ +++.. .+...
T Consensus 135 g~~l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGA-------------------------------------------------EDRLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEc-------------------------------------------------CCCeEEEEECCCCcEEEEEccCC
Confidence 99998762 1245778888 67544 34434
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec-CC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-DG 410 (958)
..+..++|+|||++|+..+.+ +.+.+||+.++......... ..+..+.|+| ||
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIE-------------DGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEEcC-------------CCcEEEEEECCCC
Confidence 678899999999999877633 48999999876543322211 3456789999 88
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-------EeeccccCceeeecCCceEEEEEeccccceEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
+.++.. +..+.|.+||. ..+.....+ ..+...+..+.|+|||+.|+..+.++. .+|
T Consensus 220 ~~l~~~-------------s~d~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~--v~~ 282 (393)
T 1erj_A 220 KYIAAG-------------SLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VKL 282 (393)
T ss_dssp CEEEEE-------------ETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EEE
T ss_pred CEEEEE-------------cCCCcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE--EEE
Confidence 877662 44567888985 223222333 123445677999999999887654433 555
Q ss_pred EEEcCCCCC--------CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEE
Q 002164 484 WVISPGSKD--------VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (958)
Q Consensus 484 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (958)
|.+...... .............+.. +.|+|+|++|+....+ ..|+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~sgs~D---------------------~~v~ 335 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------RGVL 335 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------SEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEE------EEECCCCCEEEEEeCC---------------------CeEE
Confidence 554321100 0111122222222333 7799999988876521 2599
Q ss_pred EEECCCCceEEEecC
Q 002164 556 LFDINTGSKERIWES 570 (958)
Q Consensus 556 ~~dl~~g~~~~l~~~ 570 (958)
+||+.+++.......
T Consensus 336 iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 336 FWDKKSGNPLLMLQG 350 (393)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCeEEEEECC
Confidence 999998887655543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-14 Score=153.77 Aligned_cols=275 Identities=7% Similarity=-0.002 Sum_probs=165.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||+.++.+... ..+ ++.|.+|++.. +....+.......
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~---------------------~~~--------d~~v~iw~~~~----~~~~~~~~~~~~~ 66 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNF---------------------ARG--------TGVIQLYEIQH----GDLKLLREIEKAK 66 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC-----------------------CC--------CEEEEEEEECS----SSEEEEEEEEESS
T ss_pred ceEEEEEcCCCceEEEecCc---------------------cCC--------CcEEEEEeCCC----CcccceeeecccC
Confidence 56788999999888766531 000 14799999965 3333222122334
Q ss_pred cccceeecCC---CCeEEEEEeeccccCCCCCceEEEEEcCCCc-eeeccCCCCccccccccce------EEecCCeEEE
Q 002164 190 KLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNF------VWVNNSTLLV 259 (958)
Q Consensus 190 ~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-~~~lt~~~~~~~~~~~~~~------~wspDG~~l~ 259 (958)
.+....|+|| |+.|+... ....|.+|++.+++ ........... +..+ +|+|||+.|+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGD---------FGGNLHIWNLEAPEMPVYSVKGHKEI----INAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEE---------TTSCEEEECTTSCSSCSEEECCCSSC----EEEEEEESGGGCC-CCCEEE
T ss_pred cEEEEEEcCCCCCCceEEEec---------CCCeEEEEeCCCCCccEEEEEecccc----eEEEeeccccccCCCccEEE
Confidence 7899999999 68888754 25678999998876 33222222222 4555 4678999988
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC-----
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP----- 331 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~----- 331 (958)
... ....|.++++ +++ ...+...
T Consensus 134 ~~~-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 134 TGS-------------------------------------------------RDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EEE-------------------------------------------------TTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred EEe-------------------------------------------------CCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 762 1234667777 443 3333321
Q ss_pred ccccccc----cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee
Q 002164 332 AVYTSLD----PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 332 ~~~~~~~----~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
..+..+. |+|||+.|+....+ +.+.+||+.++.......+. ..+..+.|+
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~v~~~~~~ 218 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMALRWETNIK-------------NGVCSLEFD 218 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEES
T ss_pred CceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCceeeecCCC-------------CceEEEEcC
Confidence 1344444 89999999988743 48999999977654433221 345789999
Q ss_pred c---CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-----eeccccCceeeecCCceEEEEEecccc
Q 002164 408 S---DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-----KLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 408 p---DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-----~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
| +|+.++.. +..+.|++|++ ..+.....+. .....+..+.|+|+|+.++++...++
T Consensus 219 ~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 282 (357)
T 3i2n_A 219 RKDISMNKLVAT-------------SLEGKFHVFDM--RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG- 282 (357)
T ss_dssp CSSSSCCEEEEE-------------ESTTEEEEEEE--EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-
T ss_pred CCCCCCCEEEEE-------------CCCCeEEEEeC--cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-
Confidence 9 88887763 34567888885 2222233332 45666788999999995555544443
Q ss_pred ceEEEEEcCCCCCC---------------CcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 480 RTRTWVISPGSKDV---------------APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 480 ~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
..++|.+....... ............+.. ++|+|||++|++.
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~s 339 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS------LDWSPDKRGLCVC 339 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE------EEECSSSTTEEEE
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE------EEEcCCCCeEEEE
Confidence 26677665432110 011122222333333 7899999998853
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=153.34 Aligned_cols=198 Identities=10% Similarity=0.009 Sum_probs=129.6
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|+||++||.+... ..| ......|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 12 ~~~vvllHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (267)
T 3sty_A 12 KKHFVLVHAAFHGA-----------WCW----YKIVALMRSSGHNVTA---LDLGASGINPKQALQIPNFSDYLSPLMEF 73 (267)
T ss_dssp CCEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCc-----------chH----HHHHHHHHhcCCeEEE---eccccCCCCCCcCCccCCHHHHHHHHHHH
Confidence 68999999964221 111 2456678889999999 5666888776542 2345556666555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC--------------C---Ccc--cc-
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------F---GFQ--NE- 806 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--------------~---~~~--~~- 806 (958)
++.+ + +.+++.|+|||+||.+++.++.++|++++++|++++........ + .+. ..
T Consensus 74 l~~l---~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (267)
T 3sty_A 74 MASL---P--ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGP 148 (267)
T ss_dssp HHTS---C--TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCT
T ss_pred HHhc---C--CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhh
Confidence 5443 1 34689999999999999999999999999999988754211100 0 000 00
Q ss_pred ---cchhhhc-------------HH------------------HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 807 ---DRTLWEA-------------TS------------------TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 807 ---~~~~~~~-------------~~------------------~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
....+.. .. .+............++|+|+++|++|..+| ++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~ 226 (267)
T 3sty_A 149 TNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALK--KEFLK 226 (267)
T ss_dssp TSCCCEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHH--HHHHH
T ss_pred hcccchhhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccC--HHHHH
Confidence 0000000 00 011112222222235899999999999988 88888
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
++.+.+.. ++++++|++||... .++...+.+.+.+|++++
T Consensus 227 ~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 227 LMIEKNPP----DEVKEIEGSDHVTM-MSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp HHHHHSCC----SEEEECTTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC----ceEEEeCCCCcccc-ccChHHHHHHHHHHHHhc
Confidence 88776643 58999999999864 466778888899998874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-13 Score=149.47 Aligned_cols=257 Identities=9% Similarity=0.035 Sum_probs=147.8
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeee-ccCCCCCcc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGFPDGAKL 191 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~l-t~~~~~~~~ 191 (958)
...+||||++||....+ +.|.+|++.. +..... .. +...+
T Consensus 102 ~~~~~~~~~~l~~~~~d---------------------------------g~i~iwd~~~----~~~~~~~~~--h~~~v 142 (420)
T 3vl1_A 102 VDTAKLQMRRFILGTTE---------------------------------GDIKVLDSNF----NLQREIDQA--HVSEI 142 (420)
T ss_dssp EEEECSSSCEEEEEETT---------------------------------SCEEEECTTS----CEEEEETTS--SSSCE
T ss_pred EEEEecCCCEEEEEECC---------------------------------CCEEEEeCCC----cceeeeccc--ccCcc
Confidence 34689999999988765 4789999854 333333 23 33578
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..+.|+|||+.|+... ....|.+|++.+++........... +..++|+|||+.|+....+...
T Consensus 143 ~~~~~~~~~~~l~s~s---------~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d~~v---- 205 (420)
T 3vl1_A 143 TKLKFFPSGEALISSS---------QDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIIDRGRNVLSASLDGTI---- 205 (420)
T ss_dssp EEEEECTTSSEEEEEE---------TTSEEEEEETTTCCCCEEEECCSSC----EEEEEEETTTTEEEEEETTSCE----
T ss_pred EEEEECCCCCEEEEEe---------CCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcCCCCEEEEEcCCCcE----
Confidence 9999999999888755 2568999999887654433322222 7789999999999876322111
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecC-CCccccccccCCCCcEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIG-PPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~-~~~~~~~~~~SpDGk~l~~ 348 (958)
.+++...+...... ..... ....+..+.. ++...... ....+..++|||||+.|+.
T Consensus 206 --------~iwd~~~~~~~~~~------~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 206 --------RLWECGTGTTIHTF------NRKEN-------PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp --------EEEETTTTEEEEEE------CBTTB-------TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred --------EEeECCCCceeEEe------ecCCC-------CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 11111110000000 00000 0011111111 11100011 1145678899999999988
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
...+ +.|.+||+.++.. ..+.. .....+..+.|+|||+.+++.
T Consensus 265 ~~~d-------------g~i~i~d~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~~----------- 308 (420)
T 3vl1_A 265 GHVS-------------GVITVHNVFSKEQTIQLPS------------KFTCSCNSLTVDGNNANYIYA----------- 308 (420)
T ss_dssp EETT-------------SCEEEEETTTCCEEEEECC------------TTSSCEEEEEECSSCTTEEEE-----------
T ss_pred EcCC-------------CeEEEEECCCCceeEEccc------------ccCCCceeEEEeCCCCCEEEE-----------
Confidence 7633 4899999985543 33221 011345789999999954443
Q ss_pred ccccCCeEEEEeCCCCCCCC-ceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 428 EVTPRDIIYTQQAEPVQGEG-PEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~-~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.+..+.|++|++ ..+.. ...+.. ....+..+ ++++|+.|+..+.++. .++|.+..
T Consensus 309 -g~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~--v~iw~~~~ 365 (420)
T 3vl1_A 309 -GYENGMLAQWDL--RSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTS--IKLDIISD 365 (420)
T ss_dssp -EETTSEEEEEET--TCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEE--EEEEEECC
T ss_pred -EeCCCeEEEEEc--CCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCcc--EEEEeccC
Confidence 144568999996 23333 345544 33344444 5678887766543332 66776654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=148.21 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=143.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee---eccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~---~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.+...+|||||+.||.... ...|.+|+++++... .+...... .+..++|+|||++|+....
T Consensus 18 ~v~~l~~sp~g~~las~~~---------D~~i~iw~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~g~~l~s~s~--- 81 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG---------DRRIRIWGTEGDSWICKSVLSEGHQR----TVRKVAWSPCGNYLASASF--- 81 (345)
T ss_dssp CEEEEEECTTSSCEEEEET---------TSCEEEEEEETTEEEEEEEECSSCSS----CEEEEEECTTSSEEEEEET---
T ss_pred cEEEEEECCCCCEEEEEcC---------CCeEEEEEcCCCcceeeeeeccccCC----cEEEEEECCCCCEEEEEEC---
Confidence 5788999999999998652 456777777776532 12222222 2778999999999997721
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-ccccccccCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPSP 341 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~Sp 341 (958)
...+.++++ ++. ...+... ..+..++|+|
T Consensus 82 ----------------------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 82 ----------------------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp ----------------------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred ----------------------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 122444444 332 3344444 6788999999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
||++|+..+.+ +.+.+||++.+. .+.+.... .....+..+.|+|||+.|+..
T Consensus 116 ~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~l~s~---- 168 (345)
T 3fm0_A 116 SGNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLN----------SHTQDVKHVVWHPSQELLASA---- 168 (345)
T ss_dssp TSSEEEEEETT-------------SCEEEEEECTTSCEEEEEEEC----------CCCSCEEEEEECSSSSCEEEE----
T ss_pred CCCEEEEEECC-------------CeEEEEECCCCCCeEEEEEec----------CcCCCeEEEEECCCCCEEEEE----
Confidence 99999988743 489999997542 22222111 111345789999999987763
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCc---eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc--
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-- 495 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-- 495 (958)
+..+.|.+|+. ..+.. ..+..+...+..++|+|||+.|+..+.++. .+||.....+.....
T Consensus 169 ---------s~d~~i~~w~~---~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 169 ---------SYDDTVKLYRE---EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT--VRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp ---------ETTSCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEEECTTCTTCCCC
T ss_pred ---------eCCCcEEEEEe---cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--EEEeccccCCCCcccee
Confidence 34556777874 33322 233445566788999999999988765544 788876443321100
Q ss_pred -------EEE--e-ccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 496 -------RIL--F-DRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 496 -------~~~--~-~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..+ . ......++. ++|+|++..|+...
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~------v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYD------IAWCQLTGALATAC 271 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEE------EEECTTTCCEEEEE
T ss_pred eccCCccceeEEecCCCCCcEEE------EEEecCCCEEEEEe
Confidence 001 1 112222333 78999999888775
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=154.46 Aligned_cols=208 Identities=14% Similarity=0.097 Sum_probs=135.5
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|..++...+-| .|+||++||++... ..| ...+..|++ ||.|++ .+.+|+
T Consensus 55 ~~~~~~~~~~~g~----------~p~vv~lhG~~~~~-----------~~~----~~~~~~L~~-~~~v~~---~D~~G~ 105 (314)
T 3kxp_A 55 IGRITLNVREKGS----------GPLMLFFHGITSNS-----------AVF----EPLMIRLSD-RFTTIA---VDQRGH 105 (314)
T ss_dssp CSSCEEEEEEECC----------SSEEEEECCTTCCG-----------GGG----HHHHHTTTT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEecCC----------CCEEEEECCCCCCH-----------HHH----HHHHHHHHc-CCeEEE---EeCCCc
Confidence 3777777665422 57899999964211 111 123444544 799999 555677
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----
Q 002164 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (958)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----- 799 (958)
|.+... ........+|+.++++++ +.++++++|||+||.+++.++.++|++++++|++++.......
T Consensus 106 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (314)
T 3kxp_A 106 GLSDKPETGYEANDYADDIAGLIRTL------ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179 (314)
T ss_dssp TTSCCCSSCCSHHHHHHHHHHHHHHH------TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHH
Confidence 776422 223456677777776665 2358999999999999999999999999999999875432110
Q ss_pred -------CCCccccc--chhh---------hcHHHHH---------------------------hcCcccccCCCCCCEE
Q 002164 800 -------PFGFQNED--RTLW---------EATSTYV---------------------------EMSPFMSANKLKKPIL 834 (958)
Q Consensus 800 -------~~~~~~~~--~~~~---------~~~~~~~---------------------------~~sp~~~~~~~~~P~L 834 (958)
...+.... ...+ .....+. ..+....+.++++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 259 (314)
T 3kxp_A 180 EARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVL 259 (314)
T ss_dssp HHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEE
T ss_pred HHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEE
Confidence 00000000 0000 0000000 0033344567899999
Q ss_pred EEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+++|++|..+| ++.+.++++.++. ++++++|++||.+. .++...+.+.+.+||++
T Consensus 260 ii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~~~g~gH~~~-~e~~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 260 IVRGESSKLVS--AAALAKTSRLRPD----LPVVVVPGADHYVN-EVSPEITLKAITNFIDA 314 (314)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHCTT----SCEEEETTCCSCHH-HHCHHHHHHHHHHHHHC
T ss_pred EEecCCCccCC--HHHHHHHHHhCCC----ceEEEcCCCCCcch-hhCHHHHHHHHHHHHhC
Confidence 99999999998 8888888887743 58889999999873 45567788888888863
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-13 Score=148.56 Aligned_cols=257 Identities=13% Similarity=0.113 Sum_probs=155.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|++.... . ..|.+|++..++ +..+.+..++...
T Consensus 39 ~~~~~~~spdg~~l~~~~~~----------------------~----------~~v~~~~~~~~~--~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRP----------------------E----------FRVLAYRIAPDD--GALTFAAESALPG 84 (343)
T ss_dssp CCCCEEECTTSSEEEEEETT----------------------T----------TEEEEEEECTTT--CCEEEEEEEECSS
T ss_pred CCceEEECCCCCEEEEeecC----------------------C----------CeEEEEEecCCC--CceeeccccccCC
Confidence 46679999999999887763 1 267888885212 3333333222223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC---ceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG---KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g---~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
.+..++|||||++|+++.. ....|+++++..| +.......... +..++|+|||+.|+++..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~--- 148 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSY--------NAGNVSVTRLEDGLPVGVVDVVEGLDG-----CHSANISPDNRTLWVPAL--- 148 (343)
T ss_dssp CCSEEEECTTSSEEEEEET--------TTTEEEEEEEETTEEEEEEEEECCCTT-----BCCCEECTTSSEEEEEEG---
T ss_pred CCcEEEEcCCCCEEEEEec--------CCCeEEEEECCCCccccccccccCCCC-----ceEEEECCCCCEEEEecC---
Confidence 6788999999999888652 2346777777332 23333222221 568999999998887610
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C-Ceeee-----cCC--Ccccccc
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKE-----IGP--PAVYTSL 337 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~-g~~~~-----l~~--~~~~~~~ 337 (958)
....|+++++ + |+... +.. +.....+
T Consensus 149 ---------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 149 ---------------------------------------------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ---------------------------------------------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred ---------------------------------------------CCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 2245778887 5 65432 211 2355678
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
+|+|||++|+++... .+.+.+|+++. +..+.+..... .+..+.. ...+..+.|+|||+.|++
T Consensus 184 ~~~pdg~~l~~~~~~------------~~~i~~~~~~~~~g~~~~~~~~~~---~~~~~~~-~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 184 VFHPNEQYAYCVNEL------------NSSVDVWELKDPHGNIECVQTLDM---MPENFSD-TRWAADIHITPDGRHLYA 247 (343)
T ss_dssp EECTTSSEEEEEETT------------TTEEEEEESSCTTSCCEEEEEEEC---SCTTCCS-CCCEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEeeccc---cCccccc-cCCccceEECCCCCEEEE
Confidence 999999999887632 34899999853 33322211110 0000000 012346899999998876
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE--eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.. ...+.+.+|+++ .+++..+.+. ........++|+|||++|++....++ ...+|.++..++
T Consensus 248 ~~------------~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~v~v~~~d~~~g 311 (343)
T 1ri6_A 248 CD------------RTASLITVFSVS-EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH-HISVYEIVGEQG 311 (343)
T ss_dssp EE------------TTTTEEEEEEEC-TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC-EEEEEEEETTTT
T ss_pred Ee------------cCCCEEEEEEEc-CCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC-eEEEEEEcCCCc
Confidence 31 234578888862 1244444442 22334678999999999888764433 367888887764
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=149.74 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=138.3
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++...+-|.+ .+.|.||++||.+.... .| ...+..|+ .+|.|++ .|.+|+
T Consensus 9 ~~g~~l~y~~~g~~~------~~~~~vvllHG~~~~~~-----------~~----~~~~~~L~-~~~~vi~---~D~~G~ 63 (266)
T 2xua_A 9 VNGTELHYRIDGERH------GNAPWIVLSNSLGTDLS-----------MW----APQVAALS-KHFRVLR---YDTRGH 63 (266)
T ss_dssp CSSSEEEEEEESCSS------SCCCEEEEECCTTCCGG-----------GG----GGGHHHHH-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcCCcc------CCCCeEEEecCccCCHH-----------HH----HHHHHHHh-cCeEEEE---ecCCCC
Confidence 488889887764421 01478999999542211 11 12344554 4699999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CC-
Q 002164 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (958)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~- 802 (958)
|.+.... .......+|+.+.++.+ ..+++.++||||||.+++.+|.++|++++++|++++........ +.
T Consensus 64 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 137 (266)
T 2xua_A 64 GHSEAPKGPYTIEQLTGDVLGLMDTL------KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVP 137 (266)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHH
Confidence 8875432 23556677777777664 23589999999999999999999999999999998754321100 00
Q ss_pred ---------ccc---c-----cchhh--hcH---------------HH-------HHhcCcccccCCCCCCEEEEeeCCC
Q 002164 803 ---------FQN---E-----DRTLW--EAT---------------ST-------YVEMSPFMSANKLKKPILLVHGEED 841 (958)
Q Consensus 803 ---------~~~---~-----~~~~~--~~~---------------~~-------~~~~sp~~~~~~~~~P~Lii~G~~D 841 (958)
... . ....+ ..+ .. +...+....+.++++|+|+++|++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D 217 (266)
T 2xua_A 138 RAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHD 217 (266)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTC
T ss_pred HHHHHHhcChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCC
Confidence 000 0 00000 000 00 1122333456778999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..+| ++.++++.+.+.. .++++++ +||... .++...+.+.+.+||.+
T Consensus 218 ~~~~--~~~~~~~~~~~~~----~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 218 LAAT--PAQGRELAQAIAG----ARYVELD-ASHISN-IERADAFTKTVVDFLTE 264 (266)
T ss_dssp SSSC--HHHHHHHHHHSTT----CEEEEES-CCSSHH-HHTHHHHHHHHHHHHTC
T ss_pred CcCC--HHHHHHHHHhCCC----CEEEEec-CCCCch-hcCHHHHHHHHHHHHHh
Confidence 9998 8888888777654 4889999 999874 45567788888888753
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=160.39 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=91.8
Q ss_pred CcEEEEEEEeCC--C--eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC
Q 002164 637 LQKELIKYQRKD--G--VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (958)
Q Consensus 637 ~~~~~~~~~~~d--g--~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (958)
+....+.|.+.+ | ..+.++++.|.+..+ .++.|+||++||+.............. .......+..|+++|
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~--~~~~P~vv~~HG~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~G 117 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERC--SGPYPLLGWGHPTEALRAQEQAKEIRD----AKGDDPLVTRLASQG 117 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTC--CSCEEEEEEECCCCCBTTCCHHHHHHH----TTTCSHHHHTTGGGT
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCC--CCCCcEEEEeCCCcCCCCccccccccc----ccchHHHHHHHHHCC
Confidence 445667776654 4 469999999987532 345999999999753221100000000 011224566788999
Q ss_pred cEEEEcCCCCCCCCCCcccc---hhhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh-CC---
Q 002164 713 FAILGGPTTPIIGEGDEEAN---DRFV---EQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-AP--- 781 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~---~~~~---~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-~p--- 781 (958)
|.|+++|+ +|+|.+... .... ...+.|...++..+.++ +..|+++|+|+||||||.+++.++.. .+
T Consensus 118 ~~V~~~D~---~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~ 194 (397)
T 3h2g_A 118 YVVVGSDY---LGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLS 194 (397)
T ss_dssp CEEEEECC---TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEecC---CCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcC
Confidence 99999555 566654211 1111 13344555555555543 55567899999999999999888732 21
Q ss_pred --CceeEEEEeccCCCC
Q 002164 782 --HLFCCGIARSGAYNR 796 (958)
Q Consensus 782 --~~~~a~v~~~~~~~~ 796 (958)
-.+.+++..+++++.
T Consensus 195 ~~~~~~~~~~~~~~~~l 211 (397)
T 3h2g_A 195 KEFHLVASAPISGPYAL 211 (397)
T ss_dssp TTSEEEEEEEESCCSSH
T ss_pred cCcceEEEecccccccH
Confidence 157888887776653
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=155.37 Aligned_cols=215 Identities=14% Similarity=0.140 Sum_probs=136.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGE 726 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~ 726 (958)
+|.+++...+-|++- ..+.+.||++||++..... |. .....|++ .||.|++ .|.+|+
T Consensus 36 ~g~~l~y~~~G~~~~----~~~g~plvllHG~~~~~~~-----------w~----~~~~~l~~~~~~~Via---~D~rG~ 93 (330)
T 3nwo_A 36 GDHETWVQVTTPENA----QPHALPLIVLHGGPGMAHN-----------YV----ANIAALADETGRTVIH---YDQVGC 93 (330)
T ss_dssp TTEEEEEEEECCSSC----CTTCCCEEEECCTTTCCSG-----------GG----GGGGGHHHHHTCCEEE---ECCTTS
T ss_pred cCcEEEEEEecCccC----CCCCCcEEEECCCCCCchh-----------HH----HHHHHhccccCcEEEE---ECCCCC
Confidence 789998888866321 1011247778997532211 11 11234555 6999999 666788
Q ss_pred CCccc--ch--h--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC--
Q 002164 727 GDEEA--ND--R--FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798 (958)
Q Consensus 727 G~~~~--~~--~--~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-- 798 (958)
|.+.. .. . ......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|+.++......
T Consensus 94 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~ 167 (330)
T 3nwo_A 94 GNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWS 167 (330)
T ss_dssp TTSCCCTTSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHH
T ss_pred CCCCCCCCCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHH
Confidence 88753 11 1 2355677777776664 225899999999999999999999999999998876432100
Q ss_pred ----------CC-----------CC-cccc---------------cchhhh------------cHHHHH-----------
Q 002164 799 ----------TP-----------FG-FQNE---------------DRTLWE------------ATSTYV----------- 818 (958)
Q Consensus 799 ----------~~-----------~~-~~~~---------------~~~~~~------------~~~~~~----------- 818 (958)
.. .. +... ....+. .+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 3nwo_A 168 EAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVV 247 (330)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhhh
Confidence 00 00 0000 000000 000010
Q ss_pred ----hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 819 ----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 819 ----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
..+....+.++++|+||++|++|..+| ....++.+.+. ..+++++|++||... .+....+.+.+.+||
T Consensus 248 ~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~p---~~~~~~~~~ip----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~FL 319 (330)
T 3nwo_A 248 GTLGDWSVIDRLPDVTAPVLVIAGEHDEATP---KTWQPFVDHIP----DVRSHVFPGTSHCTH-LEKPEEFRAVVAQFL 319 (330)
T ss_dssp SGGGGCBCGGGGGGCCSCEEEEEETTCSSCH---HHHHHHHHHCS----SEEEEEETTCCTTHH-HHSHHHHHHHHHHHH
T ss_pred ccccCCchhhhcccCCCCeEEEeeCCCccCh---HHHHHHHHhCC----CCcEEEeCCCCCchh-hcCHHHHHHHHHHHH
Confidence 112223456789999999999998764 45666655543 479999999999874 566788899999999
Q ss_pred HHhh
Q 002164 895 QKYC 898 (958)
Q Consensus 895 ~~~l 898 (958)
.++.
T Consensus 320 ~~~~ 323 (330)
T 3nwo_A 320 HQHD 323 (330)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8864
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=153.94 Aligned_cols=211 Identities=12% Similarity=0.142 Sum_probs=136.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGE 726 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~ 726 (958)
+|..++.... + ..|.||++||.+.... .| ......|++ +||.|++ .+.+|+
T Consensus 9 ~g~~l~y~~~---g-------~~~~vv~lhG~~~~~~-----------~~----~~~~~~l~~~~g~~v~~---~d~~G~ 60 (272)
T 3fsg_A 9 TRSNISYFSI---G-------SGTPIIFLHGLSLDKQ-----------ST----CLFFEPLSNVGQYQRIY---LDLPGM 60 (272)
T ss_dssp CTTCCEEEEE---C-------CSSEEEEECCTTCCHH-----------HH----HHHHTTSTTSTTSEEEE---ECCTTS
T ss_pred cCCeEEEEEc---C-------CCCeEEEEeCCCCcHH-----------HH----HHHHHHHhccCceEEEE---ecCCCC
Confidence 6777765443 1 1467899999642110 01 112223455 6999999 566678
Q ss_pred CCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC----
Q 002164 727 GDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF---- 801 (958)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~---- 801 (958)
|.+.... .......+|+.++++.+. +.+++.++|||+||.+++.++.++|++++++|+++|.........
T Consensus 61 G~s~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 135 (272)
T 3fsg_A 61 GNSDPISPSTSDNVLETLIEAIEEII-----GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGK 135 (272)
T ss_dssp TTCCCCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCcccccccc
Confidence 8775543 345666777777776642 236899999999999999999999999999999998753211000
Q ss_pred -------Cccc----cc------------chhhhcH-------------HHHHh--------cCcccccCCCCCCEEEEe
Q 002164 802 -------GFQN----ED------------RTLWEAT-------------STYVE--------MSPFMSANKLKKPILLVH 837 (958)
Q Consensus 802 -------~~~~----~~------------~~~~~~~-------------~~~~~--------~sp~~~~~~~~~P~Lii~ 837 (958)
.+.. .. ...+... ..+.. ..+...+.++++|+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 215 (272)
T 3fsg_A 136 HINILEEDINPVENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMV 215 (272)
T ss_dssp CCCEECSCCCCCTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEE
T ss_pred chhhhhhhhhcccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEE
Confidence 0000 00 0000000 00000 001113477899999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
|++|..+| +....++.+.++ .+++++++++||.+. .+....+.+.+.+||.+..
T Consensus 216 g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 216 GRNDQVVG--YQEQLKLINHNE----NGEIVLLNRTGHNLM-IDQREAVGFHFDLFLDELN 269 (272)
T ss_dssp ETTCTTTC--SHHHHHHHTTCT----TEEEEEESSCCSSHH-HHTHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCC--HHHHHHHHHhcC----CCeEEEecCCCCCch-hcCHHHHHHHHHHHHHHhh
Confidence 99999998 888877776553 479999999999874 4566788889999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=152.06 Aligned_cols=271 Identities=10% Similarity=0.060 Sum_probs=179.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcc---------cccceeeceeecCCCCCccceeeEeceeEEEccCCCCC---C
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELA---------RPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL---G 177 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~---~ 177 (958)
.+..++|||||++||..+.+....+++.. .+...+..+.+++++......+.++.+.+|++..+... .
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 46688999999999988877444444322 22333455677777766655555677889988543211 1
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec--CC
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN--NS 255 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp--DG 255 (958)
....+..+ ...+....|+||++.|+... ....|.+||+++++........... +..+.|+| +|
T Consensus 146 ~~~~~~~h--~~~v~~~~~~~~~~~l~t~s---------~D~~v~lwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~g 210 (354)
T 2pbi_B 146 KKKSVAMH--TNYLSACSFTNSDMQILTAS---------GDGTCALWDVESGQLLQSFHGHGAD----VLCLDLAPSETG 210 (354)
T ss_dssp GCEEEEEC--SSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSC----EEEEEECCCSSC
T ss_pred cceeeecc--CCcEEEEEEeCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEEcCCCCC----eEEEEEEeCCCC
Confidence 22334332 34688899999999998765 3568899999988765544333322 55677876 57
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-c
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-A 332 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~ 332 (958)
+.|+... ....|.++|+ +++.. .+... .
T Consensus 211 ~~l~sgs-------------------------------------------------~Dg~v~~wd~~~~~~~~~~~~h~~ 241 (354)
T 2pbi_B 211 NTFVSGG-------------------------------------------------CDKKAMVWDMRSGQCVQAFETHES 241 (354)
T ss_dssp CEEEEEE-------------------------------------------------TTSCEEEEETTTCCEEEEECCCSS
T ss_pred CEEEEEe-------------------------------------------------CCCeEEEEECCCCcEEEEecCCCC
Confidence 7887661 2245778888 77543 34333 6
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
.+..++|+|||+.|+..+.+ +.+.+||+.......+..... ...+...+.|+|||+.
T Consensus 242 ~v~~v~~~p~~~~l~s~s~D-------------~~v~lwd~~~~~~~~~~~~~~----------~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 242 DVNSVRYYPSGDAFASGSDD-------------ATCRLYDLRADREVAIYSKES----------IIFGASSVDFSLSGRL 298 (354)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCTT----------CCSCEEEEEECTTSSE
T ss_pred CeEEEEEeCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCCC----------cccceeEEEEeCCCCE
Confidence 78899999999999887743 489999998654333222110 0124467899999998
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
++.. +..+.|.+|++ ..+.....+..+...+..++|||||+.|+..+.++. .+||
T Consensus 299 l~~g-------------~~d~~i~vwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~--v~vW 353 (354)
T 2pbi_B 299 LFAG-------------YNDYTINVWDV--LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT--LRVW 353 (354)
T ss_dssp EEEE-------------ETTSCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE--EEEE
T ss_pred EEEE-------------ECCCcEEEEEC--CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC--EEec
Confidence 7763 34567999996 344444555566777888999999999988765543 4455
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-13 Score=153.94 Aligned_cols=310 Identities=14% Similarity=0.090 Sum_probs=183.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEc--cCCCCCCceeeeccCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQL--FPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~dg~~~~~~~lt~~~~~ 188 (958)
+..++|||||++|+....+ ..|.+|++ .+ + .....+. .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d---------------------------------~~V~v~D~~~~t-~--~~~~~i~---~g 221 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWAKE-P--TKVAEIK---IG 221 (543)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTSSS-C--EEEEEEE---CC
T ss_pred cceEEECCCCCEEEEECCC---------------------------------CeEEEEECcCCC-C--cEEEEEe---cC
Confidence 3457789999988777653 37889998 33 1 2223332 34
Q ss_pred CcccceeecC----CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-------ccccccceEEecCCeE
Q 002164 189 AKLNFVTWSQ----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY-------LNAIFDNFVWVNNSTL 257 (958)
Q Consensus 189 ~~~~~~~wSP----DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~-------~~~~~~~~~wspDG~~ 257 (958)
......+||| ||++|+.... ....|.++|..+++..+........ -...+..+.+|||++.
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~--------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEc--------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 5678899999 9999877542 1457889999888776543321100 0001457889998877
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCCcc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAV 333 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~ 333 (958)
+++... ...+|++++. +++. ..+.....
T Consensus 294 ~~vs~~------------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~~~~ 325 (543)
T 1nir_A 294 FIVNVK------------------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPF 325 (543)
T ss_dssp EEEEET------------------------------------------------TTTEEEEEECTTSSSCEEEEEECCSS
T ss_pred EEEEEC------------------------------------------------CCCeEEEEEecCCCcceeEEeccCcC
Confidence 776510 2356889988 5432 23322345
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee-eecCCCC
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN-WRSDKPS 412 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~-~spDG~~ 412 (958)
...+.|||||++++..... .++|.+||+++++........ ..|. .+ +.+. ++||+..
T Consensus 326 ~~~~~~spdg~~l~va~~~------------~~~v~v~D~~tg~l~~~i~~g---~~ph------~g-~g~~~~~p~~g~ 383 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANN------------SNKVAVIDSKDRRLSALVDVG---KTPH------PG-RGANFVHPKYGP 383 (543)
T ss_dssp CCCEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECS---SSBC------CT-TCEEEEETTTEE
T ss_pred ccCceECCCCCEEEEEecC------------CCeEEEEECCCCeEEEeeccC---CCCC------CC-CCcccCCCCCcc
Confidence 6778999999999877643 248999999977654332211 0110 01 2333 4688666
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCC-----CCCceEEEeeccccCceeeecCCceEEEEEeccc---cceEEE
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKT---RRTRTW 484 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~~l~ 484 (958)
+++. .. ...+.|.+|+.++.. .+..+.+.........+.++|||++|+.....+. ....|.
T Consensus 384 ~~~s-~~----------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 384 VWST-SH----------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEE-EB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred EEEe-cc----------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 5543 11 124578888863211 2223444433344567899999999987652111 013577
Q ss_pred EEcCCCCCCCcEEEe--c-----cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEE
Q 002164 485 VISPGSKDVAPRILF--D-----RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (958)
++|.++.+.....+. + .....+. ++.|+|||++|++..-.. ......|.+|
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~g~~~~~s~~~~----------------~~~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVV------QPEYNKRGDEVWFSVWNG----------------KNDSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEE------EEEECSSSSEEEEEEECC----------------TTSCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceE------eccCCCCCCEEEEEeecC----------------CCCCCeEEEE
Confidence 788777543212221 0 1111111 278999999999875211 0112369999
Q ss_pred ECCCCceEEEecC
Q 002164 558 DINTGSKERIWES 570 (958)
Q Consensus 558 dl~~g~~~~l~~~ 570 (958)
|.++++.......
T Consensus 511 D~~t~~~~~~i~~ 523 (543)
T 1nir_A 511 DDKTLKLKAVVKD 523 (543)
T ss_dssp ETTTTEEEEEECC
T ss_pred ECCCceEEEeecC
Confidence 9999988766553
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=152.04 Aligned_cols=278 Identities=10% Similarity=0.072 Sum_probs=171.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..+.|||||++|+..+.+ +.|.+|++.+ + .....+.. +..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D---------------------------------~~v~iWd~~~-~--~~~~~~~~--h~~ 109 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQD---------------------------------GRLIVWNALT-S--QKTHAIKL--HCP 109 (380)
T ss_dssp CEEEEEECTTSSCEEEEETT---------------------------------SEEEEEETTT-T--EEEEEEEC--CCT
T ss_pred EEEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--ccceEEec--CCC
Confidence 56788999999999988876 5799999854 2 23344443 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce--------eeccCCCCccccccccceEEecCCe-EEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNST-LLVC 260 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDG~-~l~~ 260 (958)
.+...+|+|||+.|+... ....+.+|++.+... +.+..+.. .+..+.|+|++. .|+.
T Consensus 110 ~v~~~~~s~~g~~las~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~-----~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGG---------LDSACSIFNLSSQADRDGNMPVSRVLTGHKG-----YASSCQYVPDQETRLIT 175 (380)
T ss_dssp TCCCCEECTTSSEEEECC---------SSSCCEEEECCCCSSCCCSSTTCCBCCCCSS-----CCCCCBCCSSSSSCEEE
T ss_pred CEEEEEECCCCCEEEEee---------CCCcEEEEECCCCccccCCccceeeccCCCc-----ceEEEEEecCCCCEEEE
Confidence 688899999999998743 355667777654321 11221111 266788998754 4554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC------CC-c
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG------PP-A 332 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~------~~-~ 332 (958)
.. ....|.++|+ +|+..... .. .
T Consensus 176 ~s-------------------------------------------------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 176 GS-------------------------------------------------GDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp EC-------------------------------------------------TTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred EC-------------------------------------------------CCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 41 2234667777 66433221 12 4
Q ss_pred cccccccCC-CCcEEEEEeecCCccccccCCCCCceeEEEecc-Cc-eEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 333 VYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 333 ~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
.+..+.|+| |++.|+..+. ++.|.+||+. ++ ..+.+.. ....+..+.|+||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~-------------D~~v~~wd~~~~~~~~~~~~~-------------h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSC-------------DTTVRLWDLRITSRAVRTYHG-------------HEGDINSVKFFPD 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEET-------------TSCEEEEETTTTCCCCEEECC-------------CSSCCCEEEECTT
T ss_pred CeEEEEeecCCCCEEEEEEC-------------CCeEEEEECCCCCcceEEECC-------------cCCCeEEEEEecC
Confidence 567778876 7887777663 3489999987 32 2233322 2245678999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEEEeec-------cccCceeeecCCceEEEEEeccccce
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLD-------LRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
|+.++.. +..+.|.+||+ ..+.. ..+.... ..+..++|+|+|+.|+.....+
T Consensus 261 ~~~l~s~-------------s~D~~i~lwd~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---- 320 (380)
T 3iz6_a 261 GQRFGTG-------------SDDGTCRLFDM---RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---- 320 (380)
T ss_dssp SSEEEEE-------------CSSSCEEEEET---TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS----
T ss_pred CCeEEEE-------------cCCCeEEEEEC---CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC----
Confidence 9987663 45667899996 33332 2222111 1256789999999988765433
Q ss_pred EEEEEcCCCCCCCcEEEe----ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEE
Q 002164 482 RTWVISPGSKDVAPRILF----DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLF 557 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 557 (958)
.|+++|+..+ +..... ......+.. ++|||||++|+....+ ..|.+|
T Consensus 321 ~i~vwd~~~~--~~~~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~D---------------------~~i~iW 371 (380)
T 3iz6_a 321 DCYVWDTLLA--EMVLNLGTLQNSHEGRISC------LGLSSDGSALCTGSWD---------------------KNLKIW 371 (380)
T ss_dssp CEEEEETTTC--CEEEEECCSCSSCCCCCCE------EEECSSSSEEEEECTT---------------------SCEEEE
T ss_pred CEEEEECCCC--ceEEEEecccCCCCCceEE------EEECCCCCEEEEeeCC---------------------CCEEEE
Confidence 3555565553 222211 122222332 7899999998877621 258899
Q ss_pred ECCCCc
Q 002164 558 DINTGS 563 (958)
Q Consensus 558 dl~~g~ 563 (958)
++.+++
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 987653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-13 Score=154.93 Aligned_cols=252 Identities=9% Similarity=0.070 Sum_probs=149.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCC-----CC---ceee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK-----LG---QEIE 181 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~-----~~---~~~~ 181 (958)
.+..++|||||++||....+ +.|.||++..... .. ....
T Consensus 30 ~V~~v~~s~~g~~la~g~~d---------------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~ 76 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKG---------------------------------GRVVIFQQEQENKIQSHSRGEYNVYST 76 (447)
T ss_dssp SEEEEEECSSSSEEEEEETT---------------------------------SEEEEEEECC-----CCCCCCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCC---------------------------------CeEEEEEecCCCCCCcccccceeEecc
Confidence 57789999999999998875 4788999854110 00 1334
Q ss_pred eccCCCC----------CcccceeecCCC--CeEEEEEeeccccCCCCCceEEEEEcCCCcee-----------------
Q 002164 182 IQGFPDG----------AKLNFVTWSQDG--KHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR----------------- 232 (958)
Q Consensus 182 lt~~~~~----------~~~~~~~wSPDG--~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~----------------- 232 (958)
+.++... ..+....|+|++ ..|+.... ...|.+|++.+++..
T Consensus 77 ~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~ 147 (447)
T 3dw8_B 77 FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN---------DKTIKLWKISERDKRPEGYNLKEEDGRYRDPT 147 (447)
T ss_dssp EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC---------SSCEEEEEEEEEEEEEECCSCC--------CC
T ss_pred cccccccccccccccccCceEEEEEcCCCCcceEEEeCC---------CCeEEEEecccccCCcceecccCccccccCcc
Confidence 4432200 458899999998 67776542 445666666553321
Q ss_pred -----------------------eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcc
Q 002164 233 -----------------------PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI 289 (958)
Q Consensus 233 -----------------------~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (958)
.+..... ..+..++|+|||+.|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~---------------------------- 195 (447)
T 3dw8_B 148 TVTTLRVPVFRPMDLMVEASPRRIFANAHT----YHINSISINSDYETYLSA---------------------------- 195 (447)
T ss_dssp CCCSCCCCEEEEEEEEEEEEEEEEECSCCS----SCCCEEEECTTSSEEEEE----------------------------
T ss_pred cccceEeccccchheeeeccceEEeccCCC----cceEEEEEcCCCCEEEEe----------------------------
Confidence 1111111 126789999999988865
Q ss_pred cccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeee--------cCCC-ccccccccCCCC-cEEEEEeecCCccc
Q 002164 290 IQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKE--------IGPP-AVYTSLDPSPDE-KYILISSIHRPYSF 357 (958)
Q Consensus 290 ~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~--------l~~~-~~~~~~~~SpDG-k~l~~~~~~~~~~~ 357 (958)
....|.++++ .+ .... +... ..+..++|+||| +.|+..+.
T Consensus 196 ----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------ 247 (447)
T 3dw8_B 196 ----------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS------ 247 (447)
T ss_dssp ----------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET------
T ss_pred ----------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC------
Confidence 1133556666 22 2221 2222 668899999999 77777763
Q ss_pred cccCCCCCceeEEEeccCceE-----EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccC
Q 002164 358 IVPCGRFPRQVGVWTTDGIFV-----RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~-----~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 432 (958)
++.|.+||+..+.. +.+........ ...+......+..+.|+|||+.|+.. +.
T Consensus 248 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~-------------~~- 305 (447)
T 3dw8_B 248 -------KGTIRLCDMRASALCDRHSKLFEEPEDPSN-RSFFSEIISSISDVKFSHSGRYMMTR-------------DY- 305 (447)
T ss_dssp -------TSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEE-------------ES-
T ss_pred -------CCeEEEEECcCCccccceeeEeccCCCccc-cccccccCceEEEEEECCCCCEEEEe-------------eC-
Confidence 34899999986542 33332211000 00011111256789999999988763 34
Q ss_pred CeEEEEeCCCCC-CCCceEEEeeccc---------------cCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 433 DIIYTQQAEPVQ-GEGPEILHKLDLR---------------YGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 433 ~~l~~~~~~~~~-g~~~~~l~~~~~~---------------~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.|.+|++ .. +.....+...... ...+.|+|||++|+..+.++ .|+++++.++
T Consensus 306 ~~v~iwd~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg----~v~iwd~~~~ 374 (447)
T 3dw8_B 306 LSVKVWDL--NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN----FFRMFDRNTK 374 (447)
T ss_dssp SEEEEEET--TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT----EEEEEETTTC
T ss_pred CeEEEEeC--CCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC----EEEEEEcCCC
Confidence 78999996 22 3344444433321 12389999999996654332 3666666654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=140.21 Aligned_cols=269 Identities=11% Similarity=0.146 Sum_probs=169.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|+|||++|+.... ...|.+|+..+++........... +..++|+|||+.|+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~------ 84 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSNLLVSAS------ 84 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEE------
T ss_pred CcEEEEEECCCCCEEEEeeC---------CCeEEEEeCCCcccchhhccCCCc----eEEEEEcCCCCEEEEEC------
Confidence 46889999999999988652 457888898887766554433322 77899999999998761
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~ 345 (958)
....|.++++ +++. ..+... ..+..+.|+|||+.
T Consensus 85 -------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 85 -------------------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred -------------------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 2245777888 6643 344433 66788899999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+..+.+ +.+.+||+.++. .+.+..+. ..+..+.|+|||+.++..
T Consensus 122 l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~-------- 167 (312)
T 4ery_A 122 IVSGSFD-------------ESVRIWDVKTGKCLKTLPAHS-------------DPVSAVHFNRDGSLIVSS-------- 167 (312)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeCC-------------CcEEEEECCCCEEEEEecCCC-------------CcEEEEEEcCCCCEEEEE--------
Confidence 9887733 489999998544 33333221 345678999999977663
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEE-eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
+..+.|.+|++ ..+.....+. .....+..+.|+|+|+.|+.....+ .|.++++..+ +.........
T Consensus 168 -----~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~--~~~~~~~~~~ 234 (312)
T 4ery_A 168 -----SYDGLCRIWDT--ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSKG--KCLKTYTGHK 234 (312)
T ss_dssp -----ETTSCEEEEET--TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTTT--EEEEEECSSC
T ss_pred -----eCCCcEEEEEC--CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCCC--cEEEEEEecC
Confidence 44567899996 2232223332 2233456689999999988775433 3556666653 2233332222
Q ss_pred ccccCCCCCCceEec-cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEee
Q 002164 504 EDVYSDPGSPMMRRT-STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (958)
Q Consensus 504 ~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~ 582 (958)
...+. ....++ ++|++|+.... ...|++||+.+++.......... .+.
T Consensus 235 ~~~~~----~~~~~~~~~~~~l~sg~~---------------------dg~i~vwd~~~~~~~~~~~~h~~----~v~-- 283 (312)
T 4ery_A 235 NEKYC----IFANFSVTGGKWIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTD----VVI-- 283 (312)
T ss_dssp CSSSC----CCEEEECSSSCEEEECCT---------------------TSCEEEEETTTCCEEEEECCCSS----CEE--
T ss_pred CceEE----EEEEEEeCCCcEEEEECC---------------------CCEEEEEECCCchhhhhhhccCC----cEE--
Confidence 21111 113344 56666665441 12599999998877655543322 122
Q ss_pred cCCCccccccccCCEEEEEE
Q 002164 583 MSDQTEGDLYLNQLKILTSK 602 (958)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~ 602 (958)
..+|+|+++.++...
T Consensus 284 -----~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 284 -----STACHPTENIIASAA 298 (312)
T ss_dssp -----EEEECSSSSEEEEEE
T ss_pred -----EEeecCcCCceEEEE
Confidence 246788887665443
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=151.83 Aligned_cols=194 Identities=17% Similarity=0.146 Sum_probs=126.6
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~ 748 (958)
|.||++||.+.... .| ......|+++||.|++ .|.+|+|.+.... .......+|+.++++
T Consensus 24 ~pvvllHG~~~~~~-----------~~----~~~~~~L~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l~ 85 (279)
T 1hkh_A 24 QPVVLIHGYPLDGH-----------SW----ERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVLE 85 (279)
T ss_dssp EEEEEECCTTCCGG-----------GG----HHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCchhh-----------HH----hhhHHHHHhCCcEEEE---eCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34888999642111 11 2345678889999999 6667888775432 234566778888777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCC----CCCcccc-----------cc-h--
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT----PFGFQNE-----------DR-T-- 809 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~----~~~~~~~-----------~~-~-- 809 (958)
.+ +.+++.++||||||.+++.+|.++|+ +++++|++++....... ....... .. .
T Consensus 86 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
T 1hkh_A 86 TL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWF 159 (279)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHH
T ss_pred hc------CCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhH
Confidence 65 23589999999999999999999998 99999999874321110 0000000 00 0
Q ss_pred ------hhh---------cHH---HHH------------------hcCcccccCCC---CCCEEEEeeCCCCCCCCChHH
Q 002164 810 ------LWE---------ATS---TYV------------------EMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ 850 (958)
Q Consensus 810 ------~~~---------~~~---~~~------------------~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~~~~ 850 (958)
.+. ..+ .+. ..+....+.++ ++|+|++||++|..+| ++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~--~~~ 237 (279)
T 1hkh_A 160 TDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--IDA 237 (279)
T ss_dssp HHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TTT
T ss_pred HHHHhhhhhcccCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCC--hHH
Confidence 000 000 000 01111234556 8999999999999998 777
Q ss_pred H-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 851 S-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 851 ~-~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+ +++.+.+. ..+++++++++|... .++...+.+.+.+||.
T Consensus 238 ~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 238 TARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLA 278 (279)
T ss_dssp THHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CeeEEEeCCCCccch-hcCHHHHHHHHHHHhh
Confidence 6 66766554 358999999999874 4566778888888885
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=161.55 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=60.2
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~-~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.+.++++|+|+++|++|..+| +..++++++.++..+..++++++++ +||... .+....+.+.|.+||.+++
T Consensus 302 ~l~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 302 ALSNVEANVLMIPCKQDLLQP--SRYNYKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKV 373 (377)
T ss_dssp HHHTCCSEEEEECBTTCSSSC--THHHHHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCC
T ss_pred HHhhCCCCEEEEecCCccccC--HHHHHHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhh
Confidence 456789999999999999998 9999999999988777799999998 999863 3445677888999998765
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=152.07 Aligned_cols=214 Identities=18% Similarity=0.181 Sum_probs=128.4
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
.+++..+|.+++....-++ + .|.||++||++.... + ......|...||.|++ .
T Consensus 17 ~~~~~~~g~~l~~~~~g~~------~--g~~vvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~---~ 69 (317)
T 1wm1_A 17 GWLDTGDGHRIYWELSGNP------N--GKPAVFIHGGPGGGI------------S----PHHRQLFDPERYKVLL---F 69 (317)
T ss_dssp EEEECSSSCEEEEEEEECT------T--SEEEEEECCTTTCCC------------C----GGGGGGSCTTTEEEEE---E
T ss_pred eEEEcCCCcEEEEEEcCCC------C--CCcEEEECCCCCccc------------c----hhhhhhccccCCeEEE---E
Confidence 3466668888876655332 1 355889999642110 0 0011233457999999 6
Q ss_pred CCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 722 PIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 722 ~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|+.++.....
T Consensus 70 D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 143 (317)
T 1wm1_A 70 DQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRK 143 (317)
T ss_dssp CCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCH
T ss_pred CCCCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCch
Confidence 667888875431 12345566665554432 33589999999999999999999999999999987542210
Q ss_pred -------------CCC--C-----Ccccccc-----------------------hhh-------------------hcHH
Q 002164 798 -------------LTP--F-----GFQNEDR-----------------------TLW-------------------EATS 815 (958)
Q Consensus 798 -------------~~~--~-----~~~~~~~-----------------------~~~-------------------~~~~ 815 (958)
..+ + ....... ..| ..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T 1wm1_A 144 QRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDD 223 (317)
T ss_dssp HHHHHHHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHH
T ss_pred hhhhHHhhccchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccc
Confidence 000 0 0000000 000 0000
Q ss_pred ---H-------H-H--h---cC--cccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 816 ---T-------Y-V--E---MS--PFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 816 ---~-------~-~--~---~s--p~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
. + . . .. ....+.+++ +|+|+++|++|..+| +..+.++.+.+.. .+++++|++||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~--~~~~~~l~~~~p~----~~~~~i~~~gH~ 297 (317)
T 1wm1_A 224 FALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQ--VQNAWDLAKAWPE----AELHIVEGAGHS 297 (317)
T ss_dssp HHHHHHHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSC--HHHHHHHHHHCTT----SEEEEETTCCSS
T ss_pred hhhhHHHhhhhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCC--HHHHHHHHhhCCC----ceEEEECCCCCC
Confidence 0 0 0 0 00 122345564 999999999999998 8888888777653 489999999998
Q ss_pred CCCcccHHHHHHHHHHHH
Q 002164 877 YAARESIMHVLWETDRWL 894 (958)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl 894 (958)
...++....+...+.+|+
T Consensus 298 ~~~~~~~~~~~~~i~~f~ 315 (317)
T 1wm1_A 298 YDEPGILHQLMIATDRFA 315 (317)
T ss_dssp TTSHHHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHh
Confidence 743333444444555544
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=151.15 Aligned_cols=215 Identities=16% Similarity=0.119 Sum_probs=132.9
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|..++....-++ ..|+||++||...... ....+. .....|++ +|.|++ .|.+
T Consensus 12 ~~~~g~~l~y~~~g~~--------g~p~vvllHG~~~~~~-----------~~~~~~-~~~~~L~~-~~~vi~---~D~~ 67 (285)
T 1c4x_A 12 FPSGTLASHALVAGDP--------QSPAVVLLHGAGPGAH-----------AASNWR-PIIPDLAE-NFFVVA---PDLI 67 (285)
T ss_dssp ECCTTSCEEEEEESCT--------TSCEEEEECCCSTTCC-----------HHHHHG-GGHHHHHT-TSEEEE---ECCT
T ss_pred EEECCEEEEEEecCCC--------CCCEEEEEeCCCCCCc-----------chhhHH-HHHHHHhh-CcEEEE---ecCC
Confidence 3347777776544211 1477999999521000 000011 12334554 499999 5666
Q ss_pred CCCCcccch---hhHHHH----HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 725 GEGDEEAND---RFVEQL----VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 725 G~G~~~~~~---~~~~~~----~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
|+|.+.... ...... .+|+.+.++.+ + .+++.|+||||||.+++.+|.++|++++++|++++.....
T Consensus 68 G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~ 141 (285)
T 1c4x_A 68 GFGQSEYPETYPGHIMSWVGMRVEQILGLMNHF---G---IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPM 141 (285)
T ss_dssp TSTTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH---T---CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCC
T ss_pred CCCCCCCCCCcccchhhhhhhHHHHHHHHHHHh---C---CCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCC
Confidence 888775432 123444 56665555543 2 3589999999999999999999999999999998754211
Q ss_pred CC--C-----CC------------------cccccc----h----hh---hcHHHHH---h------------cCccccc
Q 002164 798 LT--P-----FG------------------FQNEDR----T----LW---EATSTYV---E------------MSPFMSA 826 (958)
Q Consensus 798 ~~--~-----~~------------------~~~~~~----~----~~---~~~~~~~---~------------~sp~~~~ 826 (958)
.. . +. +..... . .+ ..+..+. . ......+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (285)
T 1c4x_A 142 NARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATL 221 (285)
T ss_dssp SSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHH
T ss_pred CccchhHHHHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhh
Confidence 00 0 00 000000 0 00 0010000 0 0112345
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.++++|+|+++|++|..+| +..++++++.++ ..+++++|++||... .+....+.+.+.+||.+
T Consensus 222 ~~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 222 GRLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TTCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEEeCCCeeeC--HHHHHHHHHhCC----CceEEEeCCCCcchh-hcCHHHHHHHHHHHHhc
Confidence 7889999999999999998 888888777653 469999999999864 45567788888888864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=140.21 Aligned_cols=254 Identities=9% Similarity=0.039 Sum_probs=163.6
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+.++. ..+...+|||||++|+... ....|.+|++++++..+........ +..++|+|||++|
T Consensus 6 ~~~~~~h~--~~V~~~~fsp~~~~l~s~~---------~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l 70 (304)
T 2ynn_A 6 KKTFSNRS--DRVKGIDFHPTEPWVLTTL---------YSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNWI 70 (304)
T ss_dssp EEEEEEEC--SCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEE
T ss_pred EEeecCCC--CceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCEE
Confidence 34454433 4689999999999998865 2568889999887665433333322 6788999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (958)
+... ....|.++++ +|+. ..+... ..+.
T Consensus 71 ~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 71 IVGS-------------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp EEEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEC-------------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 8762 2245777888 6643 344444 6788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEE-eccCCccccCcccccccccCcceeeeecC-CCC
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPS 412 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spD-G~~ 412 (958)
.++|+||+++|+..+. ++.|.+||+.++ .... +..+ ...+..+.|+|+ +..
T Consensus 102 ~~~~~~~~~~l~sgs~-------------D~~v~lWd~~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSD-------------DLTVKLWNWENNWALEQTFEGH-------------EHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEECSSSSEEEEEET-------------TSCEEEEEGGGTTEEEEEECCC-------------CSCEEEEEECTTCTTE
T ss_pred EEEEcCCCCEEEEECC-------------CCeEEEEECCCCcchhhhhccc-------------CCcEEEEEECCCCCCE
Confidence 9999999999987763 348999999854 3322 2221 134578999995 555
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeec--CCceEEEEEeccccceEEEEEcCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD--DSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
++.. +..+.|.+|++ ..+.....+.. ....+..+.|+| |++.|+..+.++ .|.++|+.
T Consensus 156 l~sg-------------s~D~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~ 216 (304)
T 2ynn_A 156 FASG-------------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQ 216 (304)
T ss_dssp EEEE-------------ETTSEEEEEET--TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETT
T ss_pred EEEE-------------eCCCeEEEEEC--CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCC
Confidence 5442 44667899996 23333333432 234455677776 677777665443 35555655
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
++ +...........+.. +.|+|+++.|+....+ ..|.+||+.+++..+...
T Consensus 217 ~~--~~~~~~~~h~~~v~~------~~~~p~~~~l~s~s~D---------------------g~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 217 TK--SCVATLEGHMSNVSF------AVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp TT--EEEEEEECCSSCEEE------EEECSSSSEEEEEETT---------------------SCEEEEETTTCCEEEEEC
T ss_pred CC--ccceeeCCCCCCEEE------EEECCCCCEEEEEcCC---------------------CeEEEEECCCCceeeecc
Confidence 53 333334444444333 7899999988877621 259999999888766554
Q ss_pred C
Q 002164 570 S 570 (958)
Q Consensus 570 ~ 570 (958)
.
T Consensus 268 ~ 268 (304)
T 2ynn_A 268 V 268 (304)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=149.03 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=171.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|+|||+.|+.... ...|.+||+.+++..+........ +..++|+|||+.|+....
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~---------Dg~i~vwd~~~~~~~~~l~~h~~~----V~~v~~~~~~~~l~sgs~----- 170 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASE---------DATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLASCSA----- 170 (410)
T ss_dssp SCEEEEEECSSSSEEEEEES---------SSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEEEEET-----
T ss_pred CcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCcEEEEEeccCCc----EEEEEEcCCCCEEEEEeC-----
Confidence 56889999999998887552 568899999988765544333322 778999999998887621
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~ 345 (958)
...|.++++ +++. +.+... ..+..++|+|||++
T Consensus 171 --------------------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 171 --------------------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp --------------------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred --------------------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 123556676 5543 334333 67889999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+..+. ++.|.+||+.++. .+.+..+. ..+..+.|+|||+.++..
T Consensus 207 l~s~s~-------------D~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~g~~l~s~-------- 252 (410)
T 1vyh_C 207 IVSASR-------------DKTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIASC-------- 252 (410)
T ss_dssp EEEEET-------------TSEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEEeC-------------CCeEEEEECCCCcEEEEEeCCC-------------ccEEEEEECCCCCEEEEE--------
Confidence 987763 3489999998554 33333221 345678999999977662
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC--------------------CceEEEEEeccccceEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD--------------------SLALVYESWYKTRRTRTW 484 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD--------------------g~~l~~~~~~~~~~~~l~ 484 (958)
+..+.|.+|++ ..+.....+..+...+..+.|+|+ |..|+..+.++ .|.
T Consensus 253 -----s~D~~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~----~i~ 321 (410)
T 1vyh_C 253 -----SNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK----TIK 321 (410)
T ss_dssp -----ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS----EEE
T ss_pred -----cCCCeEEEEEC--CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC----eEE
Confidence 44567889986 233333444455666778899997 44565554332 356
Q ss_pred EEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCce
Q 002164 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~ 564 (958)
++|+.++ ............+.. +.|+|+|++|+....+ ..|++||+.+++.
T Consensus 322 iwd~~~~--~~~~~~~~h~~~v~~------v~~~~~g~~l~s~s~D---------------------~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 322 MWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTLRVWDYKNKRC 372 (410)
T ss_dssp EEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEEEEECCTTSCC
T ss_pred EEECCCC--ceEEEEECCCCcEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCce
Confidence 6666653 223333333333333 7899999998876521 2599999988765
Q ss_pred EEEecCCcccccceeEeecCCCccccccccCCEEEE
Q 002164 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILT 600 (958)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (958)
......... .+. ..+|+|++..++.
T Consensus 373 ~~~~~~h~~----~v~-------~l~~~~~~~~l~s 397 (410)
T 1vyh_C 373 MKTLNAHEH----FVT-------SLDFHKTAPYVVT 397 (410)
T ss_dssp CEEEECCSS----CEE-------EEEECSSSSCEEE
T ss_pred EEEEcCCCC----cEE-------EEEEcCCCCEEEE
Confidence 444332221 122 2468888876553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-13 Score=152.32 Aligned_cols=193 Identities=12% Similarity=0.052 Sum_probs=126.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC--CCceeeccC---CCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQ---SPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~--~g~~~~lt~---~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+..++|||||++|+++.. ....|.+|++. +++..+... .+.. +..++|+|||+.|++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~~~~-- 168 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD--------SDKSLLVFDVDKTSKNVLKLRKRFCFSKR-----PNAISIAEDDTTVIIAD-- 168 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG--------GGTEEEEEEECSSSSSCEEEEEEEECSSC-----EEEEEECTTSSEEEEEE--
T ss_pred ceEEEEEcCCCCEEEEEEC--------CCCeEEEEECcCCCCceeeeeecccCCCC-----ceEEEEcCCCCEEEEEe--
Confidence 4788999999999866542 24567777777 666544432 1221 67899999999998761
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-----ecCCC-cccccc
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-----EIGPP-AVYTSL 337 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-----~l~~~-~~~~~~ 337 (958)
....++.+++ ++... .+... ..+..+
T Consensus 169 -----------------------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 201 (450)
T 2vdu_B 169 -----------------------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201 (450)
T ss_dssp -----------------------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred -----------------------------------------------CCCcEEEEecCCcccccccceeeecccCceEEE
Confidence 2345888888 66433 22222 667889
Q ss_pred ccCCC---CcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 338 DPSPD---EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 338 ~~SpD---Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+|+|| |++|+..+.+ +.|.+||+..+. ...+.. +....+..+.|+ ||+.|
T Consensus 202 ~~sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~------------~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKWLF------------GHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp EEEECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEECC------------CCSSCEEEEEEC-STTEE
T ss_pred EEcCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeeeec------------CCCCceEEEEEC-CCCEE
Confidence 99999 8888877633 489999998543 323221 111345789999 99987
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-------------------------eccccCceeeecCCc
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-------------------------LDLRYGGISWCDDSL 468 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-------------------------~~~~~~~~~~spDg~ 468 (958)
+.. +..+.|.+|++ ..+.....+.. ....+..+.|+|||+
T Consensus 256 ~s~-------------~~d~~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 256 LSA-------------GGDDKIFAWDW--KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEE-------------ESSSEEEEEET--TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred EEE-------------eCCCeEEEEEC--CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 763 44668999996 23333333321 123456789999999
Q ss_pred eEEEEEeccccceEEEEE
Q 002164 469 ALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~ 486 (958)
.|+.....++ ...||.+
T Consensus 321 ~l~~~~~~d~-~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATK-CIIILEM 337 (450)
T ss_dssp EEEEEETTCS-EEEEEEE
T ss_pred EEEEEECCCC-eEEEEEe
Confidence 9988874433 2566766
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=144.27 Aligned_cols=276 Identities=11% Similarity=0.121 Sum_probs=168.9
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+.++. ..+....|+|||++|+... ....|.+|+..+++.......+... +..++|+|||+.|
T Consensus 57 ~~~l~gH~--~~V~~~~~s~d~~~l~s~s---------~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~l 121 (354)
T 2pbi_B 57 RRTLKGHG--NKVLCMDWCKDKRRIVSSS---------QDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAI 121 (354)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEE
T ss_pred EEEecCCC--CeEEEEEECCCCCEEEEEe---------CCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEE
Confidence 44555543 5689999999999988865 2568889998877655443333322 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-------eeeecCC
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-------TVKEIGP 330 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-------~~~~l~~ 330 (958)
+.... ...+.++++ .+ ....+..
T Consensus 122 asg~~-------------------------------------------------d~~i~v~~~~~~~~~~~~~~~~~~~~ 152 (354)
T 2pbi_B 122 ACGGL-------------------------------------------------DNKCSVYPLTFDKNENMAAKKKSVAM 152 (354)
T ss_dssp EEEST-------------------------------------------------TSEEEEEECCCCTTCCSGGGCEEEEE
T ss_pred EEeeC-------------------------------------------------CCCEEEEEEeccccccccccceeeec
Confidence 97611 122333333 11 1122222
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeec
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
. ..+....|+||++.|+..+. ++.+.+||+..+.. +.+..+. ..+..+.|+|
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~-------------D~~v~lwd~~~~~~~~~~~~h~-------------~~v~~~~~~~ 206 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASG-------------DGTCALWDVESGQLLQSFHGHG-------------ADVLCLDLAP 206 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEET-------------TSEEEEEETTTCCEEEEEECCS-------------SCEEEEEECC
T ss_pred cCCcEEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCeEEEEEcCCC-------------CCeEEEEEEe
Confidence 2 56778899999999987773 34899999986543 3333221 2345567776
Q ss_pred --CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 409 --DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 409 --DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+|+.++.. +..+.|.+||+ ..+.....+..+...+..++|+|+|+.|+..+.++. .++|
T Consensus 207 ~~~g~~l~sg-------------s~Dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--v~lw-- 267 (354)
T 2pbi_B 207 SETGNTFVSG-------------GCDKKAMVWDM--RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLY-- 267 (354)
T ss_dssp CSSCCEEEEE-------------ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEE--
T ss_pred CCCCCEEEEE-------------eCCCeEEEEEC--CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe--EEEE--
Confidence 46655542 44567999996 233333444555667888999999998887765443 4555
Q ss_pred cCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEE
Q 002164 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (958)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~ 566 (958)
|+..+ ............ . ....+.|+|+|++|+....+ ..|.+||+.+++...
T Consensus 268 d~~~~--~~~~~~~~~~~~-~---~~~~~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 268 DLRAD--REVAIYSKESII-F---GASSVDFSLSGRLLFAGYND---------------------YTINVWDVLKGSRVS 320 (354)
T ss_dssp ETTTT--EEEEEECCTTCC-S---CEEEEEECTTSSEEEEEETT---------------------SCEEEEETTTCSEEE
T ss_pred ECCCC--cEEEEEcCCCcc-c---ceeEEEEeCCCCEEEEEECC---------------------CcEEEEECCCCceEE
Confidence 54442 222222211110 0 01127899999988877621 259999998877554
Q ss_pred EecCCcccccceeEeecCCCccccccccCCEEEEE
Q 002164 567 IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTS 601 (958)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 601 (958)
....... .+. ..+|+|||+.++..
T Consensus 321 ~l~~h~~----~v~-------~l~~spdg~~l~sg 344 (354)
T 2pbi_B 321 ILFGHEN----RVS-------TLRVSPDGTAFCSG 344 (354)
T ss_dssp EECCCSS----CEE-------EEEECTTSSCEEEE
T ss_pred EEECCCC----cEE-------EEEECCCCCEEEEE
Confidence 4332221 122 25789999866543
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-14 Score=149.36 Aligned_cols=174 Identities=10% Similarity=0.060 Sum_probs=116.3
Q ss_pred HHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 706 ~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..|+++ |.|++ .|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|+
T Consensus 58 ~~L~~~-~~vi~---~D~~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~va~~~A~~~p~ 127 (286)
T 2puj_A 58 PFVDAG-YRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 127 (286)
T ss_dssp HHHHTT-CEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHhcc-CEEEE---ECCCCCCCCCCCCCcCcCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChH
Confidence 455554 99999 6667888876542 12345566665555442 33689999999999999999999999
Q ss_pred ceeEEEEeccCCCCCC--C--CC-------Cc---cc-------------cc--------chhhh----cHHHH---H--
Q 002164 783 LFCCGIARSGAYNRTL--T--PF-------GF---QN-------------ED--------RTLWE----ATSTY---V-- 818 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~~--~--~~-------~~---~~-------------~~--------~~~~~----~~~~~---~-- 818 (958)
+++++|++++...... . .. .+ .. .. ...+. .+..+ .
T Consensus 128 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (286)
T 2puj_A 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLIS 207 (286)
T ss_dssp GEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 9999999987542110 0 00 00 00 00 00000 01000 0
Q ss_pred -------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002164 819 -------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (958)
Q Consensus 819 -------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 891 (958)
..+....+.++++|+|+++|++|..+| +..++++.+.++ ..+++++|++||... .+....+.+.+.
T Consensus 208 ~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~ 280 (286)
T 2puj_A 208 AQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLLWNID----DARLHVFSKCGAWAQ-WEHADEFNRLVI 280 (286)
T ss_dssp HHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHH
T ss_pred HhhhhccccchhhHHhhcCCCEEEEEECCCCccC--HHHHHHHHHHCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHH
Confidence 112234567789999999999999998 888888877664 369999999999864 456677888889
Q ss_pred HHHHH
Q 002164 892 RWLQK 896 (958)
Q Consensus 892 ~fl~~ 896 (958)
+||.+
T Consensus 281 ~fl~~ 285 (286)
T 2puj_A 281 DFLRH 285 (286)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99864
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=140.53 Aligned_cols=183 Identities=9% Similarity=-0.107 Sum_probs=115.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.|+||++||++.... ....+.......|+++ ||.|++++++ |++.. ... ..++
T Consensus 4 ~p~vv~lHG~~~~~~-----------~~~~~~~~~~~~l~~~~g~~vi~~d~~---g~~~~--------~~~----~~~~ 57 (194)
T 2qs9_A 4 PSKAVIVPGNGGGDV-----------TTHGWYGWVKKELEKIPGFQCLAKNMP---DPITA--------RES----IWLP 57 (194)
T ss_dssp CCEEEEECCSSSSCT-----------TTSTTHHHHHHHHTTSTTCCEEECCCS---STTTC--------CHH----HHHH
T ss_pred CCEEEEECCCCCCCc-----------ccchHHHHHHHHHhhccCceEEEeeCC---CCCcc--------cHH----HHHH
Confidence 689999999642100 0001112245567777 9999996554 43211 112 2233
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK 828 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 828 (958)
.+.+.-.+ .+++.++|||+||.+++.++.++| ++++|+.++......... ......+.. ......+.+
T Consensus 58 ~~~~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~ 125 (194)
T 2qs9_A 58 FMETELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN---ERASGYFTR------PWQWEKIKA 125 (194)
T ss_dssp HHHHTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH---HHHTSTTSS------CCCHHHHHH
T ss_pred HHHHHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh---hHHHhhhcc------cccHHHHHh
Confidence 33343112 368999999999999999999997 999999998754211000 000000000 001112233
Q ss_pred CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+.+|+|+++|++|..+| ++.+.++++.+ . .++.++++++|.+. .+. .+.+..+++||++...
T Consensus 126 ~~~p~lii~G~~D~~vp--~~~~~~~~~~~-~----~~~~~~~~~gH~~~-~~~-p~~~~~~~~fl~~~~~ 187 (194)
T 2qs9_A 126 NCPYIVQFGSTDDPFLP--WKEQQEVADRL-E----TKLHKFTDCGHFQN-TEF-HELITVVKSLLKVPAL 187 (194)
T ss_dssp HCSEEEEEEETTCSSSC--HHHHHHHHHHH-T----CEEEEESSCTTSCS-SCC-HHHHHHHHHHHTCCCC
T ss_pred hCCCEEEEEeCCCCcCC--HHHHHHHHHhc-C----CeEEEeCCCCCccc-hhC-HHHHHHHHHHHHhhhh
Confidence 46799999999999999 99999998888 3 48899999999975 333 3455667789887653
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-15 Score=157.34 Aligned_cols=220 Identities=10% Similarity=0.039 Sum_probs=133.8
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+...++..+| .+......+ ..|+||++||.+... ..| ......|+++||.|++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~---------~~~~vv~lHG~~~~~-----------~~~----~~~~~~l~~~g~~v~~- 56 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESEG---------EGAPLLMIHGNSSSG-----------AIF----APQLEGEIGKKWRVIA- 56 (279)
T ss_dssp CEEEEEEETTE-EEEEEECCC---------CEEEEEEECCTTCCG-----------GGG----HHHHHSHHHHHEEEEE-
T ss_pred eEEEEEEcCCc-eEEEEecCC---------CCCeEEEECCCCCch-----------hHH----HHHHhHHHhcCCeEEe-
Confidence 34556666554 554433211 268899999964211 111 2334456778999999
Q ss_pred CCCCCCCCCCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 719 PTTPIIGEGDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+.+|+|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|+ +.++|+.++.
T Consensus 57 --~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~ 127 (279)
T 4g9e_A 57 --PDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQL------GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127 (279)
T ss_dssp --ECCTTSTTSCCCSCHHHHSSHHHHHHHHHHHHHHH------TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCC
T ss_pred --ecCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHh------CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCC
Confidence 5666788775421 12344555555555543 33589999999999999999999998 6666666544
Q ss_pred CCCCCC-------CCCc--c--ccc-----------------chhh-hc------------HHHHH---hcCcccccCCC
Q 002164 794 YNRTLT-------PFGF--Q--NED-----------------RTLW-EA------------TSTYV---EMSPFMSANKL 829 (958)
Q Consensus 794 ~~~~~~-------~~~~--~--~~~-----------------~~~~-~~------------~~~~~---~~sp~~~~~~~ 829 (958)
...... .... . ... ...+ .. ...+. ..+....+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 207 (279)
T 4g9e_A 128 PVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEA 207 (279)
T ss_dssp CCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHC
T ss_pred CCCCCccchhhccchhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhc
Confidence 221100 0000 0 000 0000 00 00000 01122235667
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHH-HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFF-NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~-~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
++|+|+++|++|..+| ++.+.+++ +.+. .++++++|++||... .++...+.+.+.+||.+....
T Consensus 208 ~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 208 QLPIAVVNGRDEPFVE--LDFVSKVKFGNLW----EGKTHVIDNAGHAPF-REAPAEFDAYLARFIRDCTQL 272 (279)
T ss_dssp CSCEEEEEETTCSSBC--HHHHTTCCCSSBG----GGSCEEETTCCSCHH-HHSHHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEcCCCcccc--hHHHHHHhhccCC----CCeEEEECCCCcchH-HhCHHHHHHHHHHHHHHhhhh
Confidence 8999999999999998 77776665 3332 358889999999863 566778889999999987654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-12 Score=141.39 Aligned_cols=300 Identities=9% Similarity=0.046 Sum_probs=181.5
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~ 266 (958)
..+...+|+||| +.|+.... ...|.+|++.+++......... ....+..++|+| |++.|+...
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~---- 138 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK---------GGDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSS---- 138 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB---------TSCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEE----
T ss_pred CCEEEEEECCCCCCEEEEEcC---------CCeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEe----
Confidence 468899999999 77777542 5678999999877665543211 111277999999 677777651
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----ccccccccCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~Sp 341 (958)
....|.++++ ++....+... ..+..++|+|
T Consensus 139 ---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 139 ---------------------------------------------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp ---------------------------------------------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred ---------------------------------------------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence 2245777787 5544444322 4578899999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
||+.|+....+ +.|.+||+.+.....+..+. ..+..+.|+|||+.+++.
T Consensus 174 ~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~s----- 222 (383)
T 3ei3_B 174 SRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMAT----- 222 (383)
T ss_dssp TTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEEE-----
T ss_pred CCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEEE-----
Confidence 99999887633 48999999876666655332 345789999999955553
Q ss_pred CCCcccccccCCeEEEEeCCCCCC-CCceEEEeeccccCceeeec-CCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
.+..+.|.+|++..... +...........+..+.|+| ||+.|+....++ .|.++++..+........
T Consensus 223 -------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 223 -------SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp -------EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS----EEEEEETTBTTSCSEEEE
T ss_pred -------EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC----cEEEEECCCCcccccccc
Confidence 13456789999621111 22333335566788899999 999988775433 366666665422222221
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
.....+.........|+|++..++......+ .. .+ +....|++||+.+++.......... ...
T Consensus 292 --~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg---~~---s~------s~d~~i~iwd~~~~~~~~~l~~~~~---~~~ 354 (383)
T 3ei3_B 292 --HPHRQFQHLTPIKATWHPMYDLIVAGRYPDD---QL---LL------NDKRTIDIYDANSGGLVHQLRDPNA---AGI 354 (383)
T ss_dssp --CCBCCCTTSCCCCCEECSSSSEEEEECBCCT---TT---CT------TCCCCEEEEETTTCCEEEEECBTTB---CSC
T ss_pred --ccccccccccceEEeccCCCCceEEEecCCc---cc---cc------CCCCeEEEEecCCCceeeeecCCCC---Cce
Confidence 1111111111112468888887765542211 00 11 1234699999998887555443211 000
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
. ...+|++||+.++.. . ...+.+|++.+
T Consensus 355 ~------~~~~~s~~g~~l~s~-s----d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 I------SLNKFSPTGDVLASG-M----GFNILIWNRED 382 (383)
T ss_dssp C------CEEEECTTSSEEEEE-E----TTEEEEEECC-
T ss_pred E------EEEEEecCccEEEEe-c----CCcEEEEecCC
Confidence 1 123789999866544 2 25688888653
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-14 Score=150.86 Aligned_cols=120 Identities=14% Similarity=-0.009 Sum_probs=80.3
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
...++..+|..++...+-++ + .|.||++||++.... + ......|..+||.|++
T Consensus 13 ~~~~~~~~g~~l~y~~~G~~------~--g~pvvllHG~~~~~~------------~----~~~~~~~~~~~~~vi~--- 65 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGNP------H--GKPVVMLHGGPGGGC------------N----DKMRRFHDPAKYRIVL--- 65 (313)
T ss_dssp EEEEECSSSCEEEEEEEECT------T--SEEEEEECSTTTTCC------------C----GGGGGGSCTTTEEEEE---
T ss_pred cceEEcCCCCEEEEEecCCC------C--CCeEEEECCCCCccc------------c----HHHHHhcCcCcceEEE---
Confidence 33456668888876655332 1 356889999642110 0 0011133457999999
Q ss_pred CCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 721 TPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 721 ~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.|.+|+|.+.... .......+|+.+.++.+ .-+++.|+||||||.+++.+|.++|++++++|+.++.
T Consensus 66 ~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 66 FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ECCCCCcCCCCCcccccccHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 6677888885432 12445566666555443 2358999999999999999999999999999998764
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-14 Score=155.49 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=84.7
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++...+-|++ + ..|+||++||.+.... .|. .....|+++||.|++ .+.+|+
T Consensus 10 ~~g~~l~y~~~G~~~----~--~~~~vv~~hG~~~~~~-----------~~~----~~~~~l~~~g~~vi~---~d~~g~ 65 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD----Q--QGPLVVLLHGFPESWY-----------SWR----HQIPALAGAGYRVVA---IDQRGY 65 (356)
T ss_dssp ETTEEEEEEEECCTT----C--CSCEEEEECCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEEecCCC----C--CCCEEEEECCCCCcHH-----------HHH----HHHHHHHHcCCEEEE---EcCCCC
Confidence 488999888876642 1 2578999999642211 111 235578889999999 555677
Q ss_pred CCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 727 GDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 727 G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
|.+.... .......+|+.++++.+ +.+++.++|||+||.+++.++.++|++++++|++++..
T Consensus 66 g~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 66 GRSSKYRVQKAYRIKELVGDVVGVLDSY------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp TTSCCCCSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHc------CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 7765432 23455666766666553 44689999999999999999999999999999988654
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=154.41 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=113.7
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccc----------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHH
Q 002164 708 WLARGFAILGGPTTPIIGEGDEEAN----------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIA-VGGHSYGA 770 (958)
Q Consensus 708 la~~G~~vl~~~~~~~~G~G~~~~~----------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~-l~G~S~GG 770 (958)
|+++||.|+++|.+|. +|.+... ........+|+.++++.+ +.+++. |+||||||
T Consensus 94 L~~~g~~vi~~D~~G~--~g~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~~lvGhS~Gg 165 (377)
T 2b61_A 94 LDTDRYFFISSNVLGG--CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL------GISHLKAIIGGSFGG 165 (377)
T ss_dssp EETTTCEEEEECCTTC--SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT------TCCCEEEEEEETHHH
T ss_pred cccCCceEEEecCCCC--CCCCCCCcccCccccccccccCCcccHHHHHHHHHHHHHHc------CCcceeEEEEEChhH
Confidence 5578999999665541 3333221 112344555555554432 345887 99999999
Q ss_pred HHHHHHHHhCCCceeEEEEeccCCCCCCC----------------CCC---cccc-------------------c-----
Q 002164 771 FMTANLLAHAPHLFCCGIARSGAYNRTLT----------------PFG---FQNE-------------------D----- 807 (958)
Q Consensus 771 ~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----------------~~~---~~~~-------------------~----- 807 (958)
.+++.+|.++|++++++|++++....... .|. +... .
T Consensus 166 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (377)
T 2b61_A 166 MQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLA 245 (377)
T ss_dssp HHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCchhhheeEEeccCccccccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHH
Confidence 99999999999999999999886432100 000 0000 0
Q ss_pred -------c---------hhhh--------------cH-------HHHHhcC-------cccccCCCCCCEEEEeeCCCCC
Q 002164 808 -------R---------TLWE--------------AT-------STYVEMS-------PFMSANKLKKPILLVHGEEDNN 843 (958)
Q Consensus 808 -------~---------~~~~--------------~~-------~~~~~~s-------p~~~~~~~~~P~Lii~G~~D~~ 843 (958)
. ...+ .. ..+...+ ....+.++++|+|+++|++|..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~ 325 (377)
T 2b61_A 246 KAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQL 325 (377)
T ss_dssp HHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSS
T ss_pred HHhccccccccccccchHHHHHHHHhhhhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCccc
Confidence 0 0000 00 0001111 1345678899999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHH
Q 002164 844 SGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+| +.+..+..+.+......++++++| ++||... .+....+.+.|.+||.+
T Consensus 326 ~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 326 FK--PIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLAG 376 (377)
T ss_dssp SC--HHHHHHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHHT
T ss_pred CC--ccchHHHHHHHHhcCCCceEEEeCCCCCchhh-hcCHHHHHHHHHHHHhc
Confidence 98 865556666666665678999999 9999874 34566788888999865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-12 Score=143.14 Aligned_cols=304 Identities=10% Similarity=0.051 Sum_probs=176.9
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
+.+.++. ..+....|||||++|+... ....|.+|++.+++........... +..++|+|||+.|+
T Consensus 60 ~~l~gH~--~~V~~~~~sp~~~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~la 124 (380)
T 3iz6_a 60 RTLQGHS--GKVYSLDWTPEKNWIVSAS---------QDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVA 124 (380)
T ss_dssp EEECCCS--SCEEEEEECTTSSCEEEEE---------TTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEE
T ss_pred ecccccc--cEEEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEE
Confidence 3454433 5789999999999998865 2568999999887765443333322 67899999999998
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--------eeeecCC
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--------TVKEIGP 330 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--------~~~~l~~ 330 (958)
....+ ..+.++++ ++ ..+.+..
T Consensus 125 s~~~d-------------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 125 CGGLD-------------------------------------------------SACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp ECCSS-------------------------------------------------SCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred EeeCC-------------------------------------------------CcEEEEECCCCccccCCccceeeccC
Confidence 66211 12333333 21 1122333
Q ss_pred C-ccccccccCCCCcE-EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec
Q 002164 331 P-AVYTSLDPSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~-l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp 408 (958)
. +.+....|+|++.. |+..+. ++.+.+||+.++........... .+....+..+.|++
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~-------------D~~i~~wd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSG-------------DQTCVLWDVTTGQRISIFGSEFP-------SGHTADVLSLSINS 215 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECT-------------TSCEEEECTTTCCEEEEECCCSS-------SSCCSCEEEEEECS
T ss_pred CCcceEEEEEecCCCCEEEEECC-------------CCcEEEEEcCCCcEEEEeecccC-------CCCccCeEEEEeec
Confidence 3 56778899998664 554442 35899999986554332211100 01123456778876
Q ss_pred -CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 409 -DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 409 -DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
|++.++.- +..+.|.+||+. ..+.....+..+...+..+.|+|||+.|+..+.++. |.++|
T Consensus 216 ~~~~~l~sg-------------s~D~~v~~wd~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~----i~lwd 277 (380)
T 3iz6_a 216 LNANMFISG-------------SCDTTVRLWDLR-ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT----CRLFD 277 (380)
T ss_dssp SSCCEEEEE-------------ETTSCEEEEETT-TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC----EEEEE
T ss_pred CCCCEEEEE-------------ECCCeEEEEECC-CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe----EEEEE
Confidence 66655442 445678999961 123344556667778899999999999887765443 44445
Q ss_pred CCCCCCCcEEEeccCCcccc-CCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEE
Q 002164 488 PGSKDVAPRILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~ 566 (958)
+.++ .....+........ .......++|+|+|++|+....+ ..|++||+.+++...
T Consensus 278 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------g~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 278 MRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---------------------GDCYVWDTLLAEMVL 334 (380)
T ss_dssp TTTT--EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---------------------SCEEEEETTTCCEEE
T ss_pred CCCC--cEEEEecccccccccccCceEEEEECCCCCEEEEEECC---------------------CCEEEEECCCCceEE
Confidence 5553 22333222111000 00011127899999988876521 259999998776543
Q ss_pred EecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 567 IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
....... ... ..-...+|+|||+.++.-.. ...+.+|++.+.
T Consensus 335 ~~~~~~~----~h~---~~v~~l~~s~dg~~l~sgs~----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 335 NLGTLQN----SHE---GRISCLGLSSDGSALCTGSW----DKNLKIWAFSGH 376 (380)
T ss_dssp EECCSCS----SCC---CCCCEEEECSSSSEEEEECT----TSCEEEEECCSS
T ss_pred EEecccC----CCC---CceEEEEECCCCCEEEEeeC----CCCEEEEecCCC
Confidence 3211100 000 11123578999987653322 245788887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=161.79 Aligned_cols=253 Identities=9% Similarity=0.040 Sum_probs=169.4
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
.+.+++++ ..+..++|||||++|++... ...|.+|++.+++........... +..++|+|||++|
T Consensus 6 ~~~~~~h~--~~v~~i~~sp~~~~la~~~~---------~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l 70 (814)
T 3mkq_A 6 KKTFSNRS--DRVKGIDFHPTEPWVLTTLY---------SGRVEIWNYETQVEVRSIQVTETP----VRAGKFIARKNWI 70 (814)
T ss_dssp EEEEEEEC--SCEEEEEECSSSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEE
T ss_pred ceeeecCC--CceEEEEECCCCCEEEEEeC---------CCEEEEEECCCCceEEEEecCCCc----EEEEEEeCCCCEE
Confidence 34455433 46899999999999999652 568999999887665443323322 7799999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (958)
++.. ..+.|.++++ +|+. ..+... ..+.
T Consensus 71 ~~~~-------------------------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 71 IVGS-------------------------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (814)
T ss_dssp EEEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEe-------------------------------------------------CCCeEEEEECCCCcEEEEEecCCCCEE
Confidence 9772 2245788888 6643 444444 7788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eE-EEeccCCccccCcccccccccCcceeeeec-CCCC
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FV-RELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPS 412 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-DG~~ 412 (958)
.++|||||++|+..+. ++.+.+|+++++ .. +.+..+. ..+..+.|+| ||+.
T Consensus 102 ~~~~s~~~~~l~~~~~-------------dg~i~vw~~~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 102 SIAVHPTKPYVLSGSD-------------DLTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEECSSSSEEEEEET-------------TSEEEEEEGGGTSEEEEEEECCS-------------SCEEEEEEETTEEEE
T ss_pred EEEEeCCCCEEEEEcC-------------CCEEEEEECCCCceEEEEEcCCC-------------CcEEEEEEEcCCCCE
Confidence 9999999999987763 348999999854 33 2332221 3457899999 7877
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeec--CCceEEEEEeccccceEEEEEcCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCD--DSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~sp--Dg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
++.. +..+.|.+|++ ..+.....+.... ..+..+.|+| +|+.|+.....+ .|.+++..
T Consensus 156 l~~~-------------~~dg~v~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~~~d~~ 216 (814)
T 3mkq_A 156 FASG-------------CLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQ 216 (814)
T ss_dssp EEEE-------------ETTSEEEEEET--TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS----EEEEEETT
T ss_pred EEEE-------------eCCCeEEEEEC--CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC----EEEEEECC
Confidence 7663 44567999996 2333444444333 5677899999 898887765332 46666766
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
++ +...........+.. +.|+|+|+.|+....+ ..|++||+.+++......
T Consensus 217 ~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~~d---------------------g~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 217 TK--SCVATLEGHMSNVSF------AVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp TT--EEEEEEECCSSCEEE------EEECSSSSEEEEEETT---------------------SCEEEEETTTCSEEEEEC
T ss_pred CC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCcEEEEee
Confidence 53 333333333333333 7899999988876521 248899998877655544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=155.87 Aligned_cols=236 Identities=10% Similarity=0.101 Sum_probs=146.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC-CC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~-~~ 188 (958)
.+..++|||||++||....+ +.|.+|++.+ +....+..+. +.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d---------------------------------~~i~iw~~~~----~~~~~~~~~~~h~ 55 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT---------------------------------NQVELYEQDG----NGWKHARTFSDHD 55 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS---------------------------------SCBCEEEEET----TEEEECCCBCCCS
T ss_pred cEEEEEECCCCCEEEEecCC---------------------------------CEEEEEEccC----CceEEEEEEecCC
Confidence 68899999999999887654 4788999854 3212222122 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc----eeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~----~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
..+..+.|+|||++|+.... ...|.+|++.+++ ...+..... .+..++|+|||+.|++..
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~---------d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-- 119 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQ---------DRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGS-- 119 (377)
T ss_dssp SCEEEEEECTTTCCEEEEET---------TSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEE--
T ss_pred ceEEEEEEeCCCCEEEEEeC---------CCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEe--
Confidence 47899999999999988652 4578888888776 333333222 277899999999988762
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----eeecCC-C-cccccc
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGP-P-AVYTSL 337 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~~l~~-~-~~~~~~ 337 (958)
....|.++++ +++ .+.+.. . ..+..+
T Consensus 120 -----------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 120 -----------------------------------------------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp -----------------------------------------------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred -----------------------------------------------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 1233566666 443 455554 3 678899
Q ss_pred ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc-CCcccc----Ccc-cccccccCcceeeeecCCC
Q 002164 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAED----IPI-AFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 338 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~-~~~~~~----~p~-~~~~~~~~~~~~~~spDG~ 411 (958)
+|+|||++|+..+.+ +.+.+||+..+....-.. .+.... .+. .+ .....+..+.|+|||+
T Consensus 153 ~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 153 DWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp EECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred EEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 999999999988743 489999986322110000 000000 000 01 2224567899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC----ceEEEeeccccCceeeecCCceEEEEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
.|+.. +..+.|.+|++ ..+.. ...+..+...+..+.|+|||+.|+...
T Consensus 219 ~l~~~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 219 ALAYA-------------GHDSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp CEEEE-------------ETTTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred EEEEE-------------eCCCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 88773 44567888886 23333 344555666778899999999887653
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=150.17 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=83.8
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|.+++...+- + .|.||++||.+... ..| ......|+++||.|++ .|.+
T Consensus 16 ~~~~g~~l~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~g~~via---~Dl~ 67 (328)
T 2cjp_A 16 VAVNGLNMHLAELG--------E--GPTILFIHGFPELW-----------YSW----RHQMVYLAERGYRAVA---PDLR 67 (328)
T ss_dssp EEETTEEEEEEEEC--------S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHTTTCEEEE---ECCT
T ss_pred ecCCCcEEEEEEcC--------C--CCEEEEECCCCCch-----------HHH----HHHHHHHHHCCcEEEE---ECCC
Confidence 33488888766541 1 36799999964221 111 1335567788999999 6667
Q ss_pred CCCCcccc--h----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 725 GEGDEEAN--D----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 725 G~G~~~~~--~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
|+|.+... . .......+|+.+.++.+.. +.+++.|+||||||.+++.+|.++|++++++|++++.
T Consensus 68 G~G~S~~~~~~~~~~~~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp TSTTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCCcCcCCcccccHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 88887543 1 1246677888887777621 2468999999999999999999999999999998754
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-14 Score=154.67 Aligned_cols=180 Identities=14% Similarity=0.062 Sum_probs=118.3
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a 773 (958)
..+..|+++||.|++ .+.+|+|.+.... .......+|+.++++++.++ .+.++++++|||+||.++
T Consensus 84 ~~~~~l~~~g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a 158 (354)
T 2rau_A 84 SIVLYLARNGFNVYT---IDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAA 158 (354)
T ss_dssp CHHHHHHHTTEEEEE---EECGGGGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHH
T ss_pred hHHHHHHhCCCEEEE---ecCCCCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHH
Confidence 346678899999999 4555677664321 12366788999999999876 344699999999999999
Q ss_pred HHHHHhC-CCceeEEEEeccCCCC--CCCCCC-----------------------cc----------------c---ccc
Q 002164 774 ANLLAHA-PHLFCCGIARSGAYNR--TLTPFG-----------------------FQ----------------N---EDR 808 (958)
Q Consensus 774 ~~~a~~~-p~~~~a~v~~~~~~~~--~~~~~~-----------------------~~----------------~---~~~ 808 (958)
+.++.++ |++++++|++++.... ....+. +. . ...
T Consensus 159 ~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (354)
T 2rau_A 159 LNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSI 238 (354)
T ss_dssp HHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSH
T ss_pred HHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccccCCCchhhhHHHHHhccccccCccccchhhH
Confidence 9999998 8999999999653211 000000 00 0 000
Q ss_pred hhhhcHHH----------------------------------HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 809 TLWEATST----------------------------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 809 ~~~~~~~~----------------------------------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
..|-.... +...+....+.++++|+||+||++|..+| ..+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p---~~~~~l 315 (354)
T 2rau_A 239 SDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLKFDYEGILVPTIAFVSERFGIQI---FDSKIL 315 (354)
T ss_dssp HHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCCCCCTTCCCCEEEEEETTTHHHH---BCGGGS
T ss_pred HHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccccccccCCCCEEEEecCCCCCCc---cchhhh
Confidence 00000000 01112234556889999999999998754 233222
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHHh
Q 002164 855 FNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~--~~~~~~~~~~~i~~fl~~~ 897 (958)
....+++++|++||... ..+....+.+.+.+||.++
T Consensus 316 -------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 316 -------PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp -------CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred -------ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 23469999999999863 3455678899999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=151.33 Aligned_cols=297 Identities=8% Similarity=0.114 Sum_probs=175.1
Q ss_pred cccceeecCCCCeEEEEEeecc--ccCCCCCceEEEEEcCCCcee---eccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~~~~~g~~~---~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+...+|||||+.++++..... .........|++|++.+++.. ....... .+..++|+|||++|+...
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~-- 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDS-----KFNDLDWSHNNKIIAGAL-- 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSS-----CEEEEEECSSSSCEEEEE--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCC-----ceEEEEECCCCCeEEEEc--
Confidence 4677899999996666542110 000034567899999877532 2222222 277999999999998762
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C---C--eeeecCCC-cccccc
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---G--TVKEIGPP-AVYTSL 337 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~---g--~~~~l~~~-~~~~~~ 337 (958)
....|.++++ + + ....+... ..+..+
T Consensus 87 -----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 119 (416)
T 2pm9_A 87 -----------------------------------------------DNGSLELYSTNEANNAINSMARFSNHSSSVKTV 119 (416)
T ss_dssp -----------------------------------------------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE
T ss_pred -----------------------------------------------cCCeEEEeecccccccccchhhccCCccceEEE
Confidence 1234666666 4 2 34445444 778899
Q ss_pred ccCCC-CcEEEEEeecCCccccccCCCCCceeEEEeccCce------E-EEeccCCccccCcccccccccCcceeeeecC
Q 002164 338 DPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF------V-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 338 ~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~------~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
+|+|| ++.|+..+. ++.|.+||+.++. . ..+.. .......+..+.|+||
T Consensus 120 ~~~~~~~~~l~s~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~ 176 (416)
T 2pm9_A 120 KFNAKQDNVLASGGN-------------NGEIFIWDMNKCTESPSNYTPLTPGQ----------SMSSVDEVISLAWNQS 176 (416)
T ss_dssp EECSSSTTBEEEECS-------------SSCEEBCBTTTTSSCTTTCCCBCCCC----------SCCSSCCCCEEEECSS
T ss_pred EEcCCCCCEEEEEcC-------------CCeEEEEECCCCcccccccccccccc----------ccCCCCCeeEEEeCCC
Confidence 99999 677766653 3489999998654 1 11110 0112245678999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEee------ccccCceeeecCCceEEEEEeccccceE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL------DLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
+..+++. .+..+.|.+|++ ..++ ...+... ...+..+.|+|+|..+++....++....
T Consensus 177 ~~~~l~~------------~~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 177 LAHVFAS------------AGSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CTTEEEE------------ESSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCcEEEE------------EcCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 6555543 134567899996 3333 2333222 4557789999998655544443321123
Q ss_pred EEEEcCCCCCCCcEEEec-cCCccccCCCCCCceEecc-CCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECC
Q 002164 483 TWVISPGSKDVAPRILFD-RSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN 560 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~ 560 (958)
|.++++..+. ....... .....+.. +.|+| +|++|+....+ ..|++||+.
T Consensus 242 i~~~d~~~~~-~~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~~d---------------------g~v~~wd~~ 293 (416)
T 2pm9_A 242 ILIWDLRNAN-TPLQTLNQGHQKGILS------LDWCHQDEHLLLSSGRD---------------------NTVLLWNPE 293 (416)
T ss_dssp CCEEETTSTT-SCSBCCCSCCSSCEEE------EEECSSCSSCEEEEESS---------------------SEEEEECSS
T ss_pred EEEEeCCCCC-CCcEEeecCccCceeE------EEeCCCCCCeEEEEeCC---------------------CCEEEeeCC
Confidence 5555655531 2222222 22333333 78999 88888877631 259999998
Q ss_pred CCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 561 TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 561 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
+++.......... .-...+|+||+..++++... ...+.++++.+++
T Consensus 294 ~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 294 SAEQLSQFPARGN-----------WCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLT 339 (416)
T ss_dssp SCCEEEEEECSSS-----------CCCCEEECTTCTTEEEECCS---SSEEEEEESCCCC
T ss_pred CCccceeecCCCC-----------ceEEEEECCCCCCEEEEEec---CCcEEEEEccCCC
Confidence 8876554443221 11235789998545444432 3568888887654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-13 Score=149.33 Aligned_cols=247 Identities=12% Similarity=-0.008 Sum_probs=150.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCC---CCceeeeccCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK---LGQEIEIQGFP 186 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~---~~~~~~lt~~~ 186 (958)
.+..++|+| +.|+..+.+ +.|.+|++..... ......+..
T Consensus 18 ~i~~~~~~~--~~l~s~~~d---------------------------------g~i~iw~~~~~~~~~~~~~~~~~~~-- 60 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGD---------------------------------GYLKVWDNKLLDNENPKDKSYSHFV-- 60 (397)
T ss_dssp CEEEEEECS--SEEEEEETT---------------------------------SEEEEEESBCCTTCCGGGGEEEEEC--
T ss_pred CeEEEEecC--CeEEEEcCC---------------------------------CEEEEEECCCcccccCCCcceEEec--
Confidence 466788888 677777664 4799999865110 002344443
Q ss_pred CCCcccceeecCC----C---CeEEEEEeeccccCCCCCceEEEEEcCCCc------eeeccCCCCccccccccceEEe-
Q 002164 187 DGAKLNFVTWSQD----G---KHLAFSIRIDAEDSSSSKLRVWVADVDTGK------ARPLFQSPDIYLNAIFDNFVWV- 252 (958)
Q Consensus 187 ~~~~~~~~~wSPD----G---~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~------~~~lt~~~~~~~~~~~~~~~ws- 252 (958)
+...+....|+|| | +.|+.... ...|++|++.+++ ...+.......-...+..++|+
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSF---------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEET---------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcC---------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 3346899999999 9 88887552 4578888887776 4445433200000127789999
Q ss_pred ---cCCeE-EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C-----
Q 002164 253 ---NNSTL-LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D----- 322 (958)
Q Consensus 253 ---pDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~----- 322 (958)
|||+. |+... ....|.++++ +
T Consensus 132 ~~~~~~~~~l~~~~-------------------------------------------------~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 132 SNDRLLSHRLVATD-------------------------------------------------VKGTTYIWKFHPFADES 162 (397)
T ss_dssp CC----CEEEEEEE-------------------------------------------------TTSCEEEEEEESSSSHH
T ss_pred ccCCCCceEEEEEe-------------------------------------------------CCCcEEEEeCCcccccc
Confidence 99998 77652 1123555555 4
Q ss_pred -Ce-ee-----ec-------CCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCc
Q 002164 323 -GT-VK-----EI-------GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPL 386 (958)
Q Consensus 323 -g~-~~-----~l-------~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~ 386 (958)
++ .. .+ ... ..+..++|+||| .|+.... ++.+.+||+..+.. ..+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-------------NGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-------------TSEEEEEETTTTEEEEEEECCC-
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-------------CCcEEEEECCCCceeEEEecccc
Confidence 32 22 22 112 567889999999 6666552 34899999986543 33322000
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccC---CeEEEEeCCCCCCCCceEEEe----------
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR---DIIYTQQAEPVQGEGPEILHK---------- 453 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~g~~~~~l~~---------- 453 (958)
.. .....+..+.|+|||+.|+.. +.. +.|.+|++ ..+.....+..
T Consensus 229 h~-------~~~~~i~~i~~~~~~~~l~~~-------------~~d~~~g~i~i~d~--~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 229 MI-------NNSNSIRSVKFSPQGSLLAIA-------------HDSNSFGCITLYET--EFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp ---------CCCCCEEEEEECSSTTEEEEE-------------EEETTEEEEEEEET--TTCCEEEEECBC--------C
T ss_pred cc-------ccCCccceEEECCCCCEEEEE-------------ecCCCCceEEEEEC--CCCcccceeccCccccccccc
Confidence 00 001345789999999987763 223 57899996 23333344444
Q ss_pred ---eccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 454 ---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 454 ---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
....+..+.|+|||+.|+.....+ .|+++++..+
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~ 323 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDG----KLRFWDVKTK 323 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence 556678899999999988775332 4666676664
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=150.73 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=132.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++...+-+++ .|+||++||.+.... .|. .....| ++||.|++ .+.+|+|
T Consensus 18 ~g~~l~~~~~g~~~--------~~~vl~lHG~~~~~~-----------~~~----~~~~~l-~~~~~v~~---~d~~G~G 70 (299)
T 3g9x_A 18 LGERMHYVDVGPRD--------GTPVLFLHGNPTSSY-----------LWR----NIIPHV-APSHRCIA---PDLIGMG 70 (299)
T ss_dssp TTEEEEEEEESCSS--------SCCEEEECCTTCCGG-----------GGT----TTHHHH-TTTSCEEE---ECCTTST
T ss_pred CCeEEEEEecCCCC--------CCEEEEECCCCccHH-----------HHH----HHHHHH-ccCCEEEe---eCCCCCC
Confidence 88888877764321 467999999653211 111 123345 56999999 5666777
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CCC--
Q 002164 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PFG-- 802 (958)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~~-- 802 (958)
.+.... .......+|+.++++++ +.+++.++|||+||.+++.++.++|++++++|++++....... .+.
T Consensus 71 ~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 144 (299)
T 3g9x_A 71 KSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144 (299)
T ss_dssp TSCCCCCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGG
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHh------CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchH
Confidence 775432 23455666666666553 3458999999999999999999999999999999854332100 000
Q ss_pred -------cccc---------cchhh--------------hcH-----------------HHHHhc--------------C
Q 002164 803 -------FQNE---------DRTLW--------------EAT-----------------STYVEM--------------S 821 (958)
Q Consensus 803 -------~~~~---------~~~~~--------------~~~-----------------~~~~~~--------------s 821 (958)
+... ..... ... ..+... +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (299)
T 3g9x_A 145 ARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEA 224 (299)
T ss_dssp GHHHHHHHTSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhh
Confidence 0000 00000 000 000000 0
Q ss_pred cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 822 PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 822 p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
....+.++++|+|+++|++|..+| ++...++.+.+. .+++++++++||.+. .++...+.+.|.+++.+
T Consensus 225 ~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 225 YMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPA 292 (299)
T ss_dssp HHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGG
T ss_pred hhhhcccCCCCeEEEecCCCCCCC--HHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhh
Confidence 111245678999999999999998 888888877764 378999999999863 45555665666655544
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=142.77 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=134.0
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.... + + .|.||++||...... .+..+.. ....| ++||.|++ .|.+|+
T Consensus 12 ~~g~~l~y~~~---G-----~--g~~vvllHG~~~~~~-----------~~~~w~~-~~~~L-~~~~~vi~---~Dl~G~ 65 (282)
T 1iup_A 12 AAGVLTNYHDV---G-----E--GQPVILIHGSGPGVS-----------AYANWRL-TIPAL-SKFYRVIA---PDMVGF 65 (282)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCCTTCC-----------HHHHHTT-THHHH-TTTSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCcc-----------HHHHHHH-HHHhh-ccCCEEEE---ECCCCC
Confidence 37888876543 1 1 356999999421110 0001111 12234 67999999 666788
Q ss_pred CCcccch--h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-CC--
Q 002164 727 GDEEAND--R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TP-- 800 (958)
Q Consensus 727 G~~~~~~--~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~-- 800 (958)
|.+.... . ......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++...... ..
T Consensus 66 G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~ 139 (282)
T 1iup_A 66 GFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGL 139 (282)
T ss_dssp TTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHH
Confidence 8875432 1 2455666666665543 235899999999999999999999999999999987542110 00
Q ss_pred ---CCcc---------------cc---cch----hh---hcH---HHHHhc-------------CcccccCCCCCCEEEE
Q 002164 801 ---FGFQ---------------NE---DRT----LW---EAT---STYVEM-------------SPFMSANKLKKPILLV 836 (958)
Q Consensus 801 ---~~~~---------------~~---~~~----~~---~~~---~~~~~~-------------sp~~~~~~~~~P~Lii 836 (958)
+.+. .. ... .+ ..+ ..+... .....+.++++|+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii 219 (282)
T 1iup_A 140 NAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLII 219 (282)
T ss_dssp HHHHTCCSCHHHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEE
T ss_pred HHHhcCCCcHHHHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEE
Confidence 0000 00 000 00 000 001000 0113567889999999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+|++|..+| +..+.++.+.+. ..+++++|++||... .+....+.+.+.+||.+
T Consensus 220 ~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 220 HGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp EETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred ecCCCCCCC--HHHHHHHHHhCC----CCeEEEECCCCCCcc-ccCHHHHHHHHHHHHhc
Confidence 999999998 888888877654 369999999999863 45677888889999876
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=146.27 Aligned_cols=213 Identities=14% Similarity=0.150 Sum_probs=133.3
Q ss_pred eCCC-eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 646 RKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 646 ~~dg-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
..+| .+++....- .++.|.||++||......+ ...|. .....|+++ |.|++ .|.+
T Consensus 19 ~~~g~~~l~y~~~G--------~g~~~~vvllHG~~pg~~~--------~~~w~----~~~~~L~~~-~~via---~Dl~ 74 (291)
T 2wue_A 19 DVDGPLKLHYHEAG--------VGNDQTVVLLHGGGPGAAS--------WTNFS----RNIAVLARH-FHVLA---VDQP 74 (291)
T ss_dssp ESSSEEEEEEEEEC--------TTCSSEEEEECCCCTTCCH--------HHHTT----TTHHHHTTT-SEEEE---ECCT
T ss_pred EeCCcEEEEEEecC--------CCCCCcEEEECCCCCccch--------HHHHH----HHHHHHHhc-CEEEE---ECCC
Confidence 3488 888766542 1224689999995210000 00111 123355554 99999 6667
Q ss_pred CCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC--CC
Q 002164 725 GEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT 799 (958)
Q Consensus 725 G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~ 799 (958)
|+|.+.... .......+|+.+.++.+ + .+++.|+||||||.+++.+|.++|++++++|++++..... ..
T Consensus 75 G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~---~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~ 148 (291)
T 2wue_A 75 GYGHSDKRAEHGQFNRYAAMALKGLFDQL---G---LGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFA 148 (291)
T ss_dssp TSTTSCCCSCCSSHHHHHHHHHHHHHHHH---T---CCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSS
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHh---C---CCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccc
Confidence 888875532 22445566666665554 2 3589999999999999999999999999999998754211 00
Q ss_pred C--C-------Cc-----------------cccc---ch----hh---hcHHHH----H---h-cC-----cc--cccCC
Q 002164 800 P--F-------GF-----------------QNED---RT----LW---EATSTY----V---E-MS-----PF--MSANK 828 (958)
Q Consensus 800 ~--~-------~~-----------------~~~~---~~----~~---~~~~~~----~---~-~s-----p~--~~~~~ 828 (958)
. . .+ .... .. .+ ..+..+ . . .+ .. ..+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (291)
T 2wue_A 149 PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR 228 (291)
T ss_dssp CSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGG
T ss_pred cccchhhHHHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhh
Confidence 0 0 00 0000 00 00 001000 0 0 00 11 45667
Q ss_pred CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+++|+|+++|++|..+| +..++++.+.+. ..++++++++||... .+....+.+.+.+||.
T Consensus 229 i~~P~lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 229 LRQPVLLIWGREDRVNP--LDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp CCSCEEEEEETTCSSSC--GGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred CCCCeEEEecCCCCCCC--HHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 89999999999999998 888887776654 369999999999863 4556677778888874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-12 Score=143.76 Aligned_cols=252 Identities=15% Similarity=0.124 Sum_probs=159.2
Q ss_pred eceeEEEccCCCCCCceee-eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIE-IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~-lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|+||++.+ ++... +....++..+..++|||||++||... ....|.+|++.+++..+........
T Consensus 125 ~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---------~Dg~v~iWd~~~~~~~~~~~~h~~~ 191 (420)
T 4gga_A 125 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHSAR 191 (420)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---------CCCeEEEEEcCCCcEEEEEeCCCCc
Confidence 3899999865 44333 33222334789999999999998855 2567889999988765544433322
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
+. +++.|++.|+... ....++.++.
T Consensus 192 ----v~--~~s~~~~~l~sgs-------------------------------------------------~d~~i~~~d~ 216 (420)
T 4gga_A 192 ----VG--SLSWNSYILSSGS-------------------------------------------------RSGHIHHHDV 216 (420)
T ss_dssp ----EE--EEEEETTEEEEEE-------------------------------------------------TTSEEEEEET
T ss_pred ----eE--EEeeCCCEEEEEe-------------------------------------------------CCCceeEeee
Confidence 33 3455677777551 1234556665
Q ss_pred -CC--eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE--eccCCccccCccccc
Q 002164 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFN 395 (958)
Q Consensus 322 -~g--~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~--l~~~~~~~~~p~~~~ 395 (958)
.. ....+... ..+....|+|+|+.++....+ +.+.+|+...+.... +.. ..
T Consensus 217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~~~----------~~ 273 (420)
T 4gga_A 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQT----------FT 273 (420)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCSEE----------EC
T ss_pred cccceeeEEecccccceeeeeecCCCCeeeeeecc-------------ccceEEeeccccccceeeee----------ec
Confidence 32 23333333 567788999999999888743 478999987543211 110 01
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
.....+..+.|+|++..+++.... +..+.|.+|++ ..++..........+....|+|+++.|+.+..
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~g----------s~D~~I~iwd~---~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEEC----------TTTCEEEEEET---TTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred ccCCceeeeeeCCCcccEEEEEee----------cCCCEEEEEeC---CccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 112345778999999988774221 33557899996 44443333344556677899999999998765
Q ss_pred ccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
...+ .|++++..++ +.......+...+.. ++|||||++|+...
T Consensus 341 ~~d~--~I~iwd~~~~--~~v~~l~gH~~~V~~------l~~spdg~~l~S~s 383 (420)
T 4gga_A 341 FAQN--QLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAA 383 (420)
T ss_dssp TTTC--CEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred cCCC--EEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 4332 3555666653 344444444444544 78999999998776
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=144.72 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=132.8
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.... + . .|.||++||........ ..|. .....|++ +|.|++ .|.+|+
T Consensus 23 ~~g~~l~y~~~---g-----~--g~~vvllHG~~~~~~~~--------~~~~----~~~~~L~~-~~~vi~---~Dl~G~ 76 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----K--GQPVILIHGGGAGAESE--------GNWR----NVIPILAR-HYRVIA---MDMLGF 76 (296)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCSTTCCHH--------HHHT----TTHHHHTT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCcchH--------HHHH----HHHHHHhh-cCEEEE---ECCCCC
Confidence 47888875543 1 1 35688999953110000 0011 12334544 499999 666788
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-----
Q 002164 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT----- 799 (958)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~----- 799 (958)
|.+... ........+|+.+.++.+ + + .+++.|+||||||.+++.+|.++|++++++|++++.......
T Consensus 77 G~S~~~~~~~~~~~~~~dl~~~l~~l---~-~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 151 (296)
T 1j1i_A 77 GKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLR 151 (296)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc---C-C-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHH
Confidence 877521 112445566655555432 2 2 158999999999999999999999999999998875421100
Q ss_pred -CCCccc---------------cc-------chhhh---cH---HHHHh-----------cCcccccCCCCCCEEEEeeC
Q 002164 800 -PFGFQN---------------ED-------RTLWE---AT---STYVE-----------MSPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 800 -~~~~~~---------------~~-------~~~~~---~~---~~~~~-----------~sp~~~~~~~~~P~Lii~G~ 839 (958)
.+.+.. .. ...+. .+ ..+.. ......+.++++|+|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~ 231 (296)
T 1j1i_A 152 PIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGK 231 (296)
T ss_dssp ----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEET
T ss_pred HHhcccCCchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEEC
Confidence 000000 00 00000 00 00100 01223467889999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+|..+| +..+.++.+.+. ..++++++++||... .+....+.+.+.+||.+.+.
T Consensus 232 ~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 284 (296)
T 1j1i_A 232 DDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVD 284 (296)
T ss_dssp TCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC--
T ss_pred CCcccC--HHHHHHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCC
Confidence 999998 888888877654 368999999999864 45677888999999988763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-12 Score=138.15 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=158.0
Q ss_pred eceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|+||++.+ ++ .+.++...+...+...+|+|||++|+... ....|.+|++++++..+.......
T Consensus 45 ~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---------~Dg~v~iw~~~~~~~~~~~~~h~~- 110 (318)
T 4ggc_A 45 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---------SSAEVQLWDVQQQKRLRNMTSHSA- 110 (318)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSS-
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---------CCCcEEEeecCCceeEEEecCccc-
Confidence 3799999865 43 33333222334688999999999998754 256889999998876554433332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
....++++++.|+... ....+...+.
T Consensus 111 -----~~~~~~~~~~~l~s~~-------------------------------------------------~~~~~~~~~~ 136 (318)
T 4ggc_A 111 -----RVGSLSWNSYILSSGS-------------------------------------------------RSGHIHHHDV 136 (318)
T ss_dssp -----CEEEEEEETTEEEEEE-------------------------------------------------TTSEEEEEET
T ss_pred -----eEEEeecCCCEEEEEe-------------------------------------------------cCCceEeeec
Confidence 2445677787777651 1122334444
Q ss_pred -CC--eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccc
Q 002164 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (958)
Q Consensus 322 -~g--~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~ 397 (958)
.+ ....+... ..+....|+++|+.|+....+ +.+.+||+..++........ ....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~--------~~~~ 195 (318)
T 4ggc_A 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQT--------FTQH 195 (318)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCSEE--------ECCC
T ss_pred CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCcccccceee--------eccc
Confidence 32 22233333 566788899999999877633 48999999754321100000 0011
Q ss_pred ccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecc
Q 002164 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 398 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
...+..+.|+|++..++..... +....|.+|+. ..............+....|+|+++.++..+...
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~----------~~~~~i~lwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGG----------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEEC----------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred CCceEEEEecCCCCcEEEEEec----------CCCCEEEEEec---ccccccccccceeeeeeeeecccccceEEEEEcC
Confidence 1344678899999888764221 33456888885 4444444445555677789999999998876433
Q ss_pred ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
. ..|+++++.++ +.......+...+.. ++|||||++|+...
T Consensus 263 d--~~i~iwd~~~~--~~~~~l~gH~~~V~~------l~~spdg~~l~S~s 303 (318)
T 4ggc_A 263 Q--NQLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAA 303 (318)
T ss_dssp T--CCEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred C--CEEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 3 23556666664 344444444555554 78999999988776
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-12 Score=156.27 Aligned_cols=190 Identities=8% Similarity=0.020 Sum_probs=118.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhccc--------ccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceee
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELAR--------PEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~ 181 (958)
.+..++|||||++||....+....++.... ....+..+.+.+ +......+.++.|.+|++.. + .....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-~--~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-Q--KVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT-C--SEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC-C--cEEEE
Confidence 467889999999999988764333332222 223445666777 44344455557899999954 2 12233
Q ss_pred eccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccC-------CCCccccccccceEEecC
Q 002164 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-------SPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~-------~~~~~~~~~~~~~~wspD 254 (958)
+. ....+....|+|||++|+... ....|.+||+++++...... .........+..++|+|+
T Consensus 95 ~~---~~~~V~~v~~sp~g~~l~sgs---------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 95 VF---VPGKITSIDTDASLDWMLIGL---------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EE---CSSCEEEEECCTTCSEEEEEE---------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred Ec---CCCCEEEEEECCCCCEEEEEc---------CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 32 224688999999999998854 35688999998876531110 000001122779999997
Q ss_pred C-eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCC-
Q 002164 255 S-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGP- 330 (958)
Q Consensus 255 G-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~- 330 (958)
+ ..|+... ....+ ++|+ +++.. .+..
T Consensus 163 ~~~~l~~g~-------------------------------------------------~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 163 DIGTVLISY-------------------------------------------------EYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp EEEEEEEEC-------------------------------------------------SSCEE-EEETTTTEEEEEECCC
T ss_pred CCCEEEEEe-------------------------------------------------CCCcE-EEECCCCceEEEEecc
Confidence 5 5565441 12345 6666 55322 2211
Q ss_pred -----------------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE
Q 002164 331 -----------------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (958)
Q Consensus 331 -----------------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~ 378 (958)
. ..+..++|||||++|+..+.+ +.|.+||+.+++.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D-------------g~i~lWd~~~g~~ 245 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED-------------NSLVFWDANSGHM 245 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTCCE
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC-------------CeEEEEECCCCcE
Confidence 1 347889999999999888743 4899999986544
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=139.97 Aligned_cols=183 Identities=13% Similarity=-0.057 Sum_probs=115.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|+||++||..... . ..+.......|+++||.|+.++++ ..+ .+ ......+|+.+.++.
T Consensus 4 ~p~vv~~HG~~~~~-----------~--~~~~~~~~~~l~~~g~~v~~~d~~---~~~---~~--~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASS-----------T--NHWFPWLKKRLLADGVQADILNMP---NPL---QP--RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCT-----------T--STTHHHHHHHHHHTTCEEEEECCS---CTT---SC--CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCc-----------c--hhHHHHHHHHHHhCCcEEEEecCC---CCC---CC--CHHHHHHHHHHHHHh
Confidence 58899999964211 1 011122233577899999997775 111 11 223444444443332
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccC
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN 827 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 827 (958)
. .+++.++|||+||.+++.++.++|+ +++++|+++|....... +. ....+...+ .....+.
T Consensus 63 ------~-~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~---~~-~~~~~~~~~------~~~~~~~ 125 (192)
T 1uxo_A 63 ------L-HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT---LQ-MLDEFTQGS------FDHQKII 125 (192)
T ss_dssp ------C-CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT---CG-GGGGGTCSC------CCHHHHH
T ss_pred ------c-cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc---ch-hhhhhhhcC------CCHHHHH
Confidence 2 4689999999999999999999998 99999999986542110 00 000000000 0012234
Q ss_pred CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++++|+|+++|++|..+| ++.+.++.+.+ ..+++++++++|.+.... . ..+..+.+||.+++.
T Consensus 126 ~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~-~-~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 126 ESAKHRAVIASKDDQIVP--FSFSKDLAQQI-----DAALYEVQHGGHFLEDEG-F-TSLPIVYDVLTSYFS 188 (192)
T ss_dssp HHEEEEEEEEETTCSSSC--HHHHHHHHHHT-----TCEEEEETTCTTSCGGGT-C-SCCHHHHHHHHHHHH
T ss_pred hhcCCEEEEecCCCCcCC--HHHHHHHHHhc-----CceEEEeCCCcCcccccc-c-ccHHHHHHHHHHHHH
Confidence 456899999999999998 88888888877 258899999999874221 1 112345677776664
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=148.13 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=126.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (958)
.|.||++||...... .|.. ....|+ .+|.|++ .|.+|+|.+.... .......+|+
T Consensus 20 ~~~vvllHG~~~~~~-----------~w~~----~~~~L~-~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~a~dl 80 (271)
T 1wom_A 20 KASIMFAPGFGCDQS-----------VWNA----VAPAFE-EDHRVIL---FDYVGSGHSDLRAYDLNRYQTLDGYAQDV 80 (271)
T ss_dssp SSEEEEECCTTCCGG-----------GGTT----TGGGGT-TTSEEEE---CCCSCCSSSCCTTCCTTGGGSHHHHHHHH
T ss_pred CCcEEEEcCCCCchh-----------hHHH----HHHHHH-hcCeEEE---ECCCCCCCCCCCcccccccccHHHHHHHH
Confidence 377999999642211 1111 122344 4799999 6667888775321 1245666777
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC--C--Ccccc-----------cc
Q 002164 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--F--GFQNE-----------DR 808 (958)
Q Consensus 744 ~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--~--~~~~~-----------~~ 808 (958)
.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++........ + .+... ..
T Consensus 81 ~~~l~~l------~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (271)
T 1wom_A 81 LDVCEAL------DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNY 154 (271)
T ss_dssp HHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhH
Confidence 7666543 23689999999999999999999999999999988642110000 0 00000 00
Q ss_pred hhh------------hcH---HH----HH---------------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 809 TLW------------EAT---ST----YV---------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 809 ~~~------------~~~---~~----~~---------------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
..| ..+ +. +. ..+....+.++++|+|+++|++|..+| +..++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~--~~~~~~~ 232 (271)
T 1wom_A 155 IGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAP--ATVGKYM 232 (271)
T ss_dssp HHHHHHHHHHHHCCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCC--HHHHHHH
Confidence 000 000 00 00 011223457889999999999999998 7777777
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+.+. ..++++++++||... .+....+.+.+.+||.++
T Consensus 233 ~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 270 (271)
T 1wom_A 233 HQHLP----YSSLKQMEARGHCPH-MSHPDETIQLIGDYLKAH 270 (271)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHHCC----CCEEEEeCCCCcCcc-ccCHHHHHHHHHHHHHhc
Confidence 66553 379999999999863 456778889999999876
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=144.30 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=124.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (958)
.|.||++||.+... ..| ......|+++ |.|++ .|.+|+|.+.... ..+....+|+.+.++
T Consensus 16 ~~~vvllHG~~~~~-----------~~w----~~~~~~L~~~-~~via---~Dl~G~G~S~~~~~~~~~~~a~dl~~~l~ 76 (255)
T 3bf7_A 16 NSPIVLVHGLFGSL-----------DNL----GVLARDLVND-HNIIQ---VDVRNHGLSPREPVMNYPAMAQDLVDTLD 76 (255)
T ss_dssp CCCEEEECCTTCCT-----------TTT----HHHHHHHTTT-SCEEE---ECCTTSTTSCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccH-----------hHH----HHHHHHHHhh-CcEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 46789999964211 112 1234455554 99999 6667888775432 224566677777766
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC-CCCCCCC-------------Cccccc------c
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLTPF-------------GFQNED------R 808 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~~~-------------~~~~~~------~ 808 (958)
.+ + .+++.|+||||||.+++.+|.++|++++++|++++.. ......+ ...... .
T Consensus 77 ~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T 3bf7_A 77 AL---Q---IDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMR 150 (255)
T ss_dssp HH---T---CSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHT
T ss_pred Hc---C---CCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHh
Confidence 54 2 2589999999999999999999999999999875321 1000000 000000 0
Q ss_pred hh------------------hh-cHHH----HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 002164 809 TL------------------WE-ATST----YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (958)
Q Consensus 809 ~~------------------~~-~~~~----~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (958)
.. |. .... +........+.++++|+|+++|++|..++ +..++++.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T 3bf7_A 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVS--EQYRDDLLAQFP----QA 224 (255)
T ss_dssp TTCCCHHHHHHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTC--GGGHHHHHHHCT----TE
T ss_pred hhcchhHHHHHHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCC--HHHHHHHHHHCC----CC
Confidence 00 00 0000 00000001245789999999999999998 787777766543 37
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 866 RLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 866 ~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+++++|++||.+. .+....+.+.+.+||.+|
T Consensus 225 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp EECCBTTCCSCHH-HHCHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCCCccc-cCCHHHHHHHHHHHHhcC
Confidence 9999999999874 455678888899998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=140.06 Aligned_cols=284 Identities=8% Similarity=0.053 Sum_probs=168.7
Q ss_pred CcccceeecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCc-----e-eeccCCCCccccccccceEEecCCeEEEEE
Q 002164 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGK-----A-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-----~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
..+...+|+|++ +.|+... ....|.+|++.+.. . +.+..+.. .+..++|+|||++|+..
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s---------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSAS---------RDKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSA 83 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEE---------TTSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEE
T ss_pred ceEEEEEccCCCccEEEEec---------CCccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEE
Confidence 568889999977 4555533 24466666655422 1 12222222 26789999999999876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~ 338 (958)
. ....|.++|+ +|+. +.+... ..+..++
T Consensus 84 s-------------------------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 84 S-------------------------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp E-------------------------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred e-------------------------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 2 2345778888 7754 344444 6788999
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC------C
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP------S 412 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~------~ 412 (958)
|+|||+.|+..+.+ +.+.+||+++.....+..+. ..+..+.|+|+++ .
T Consensus 115 ~~~~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 115 IDKKASMIISGSRD-------------KTIKVWTIKGQCLATLLGHN-------------DWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ECTTSCEEEEEETT-------------SCEEEEETTSCEEEEECCCS-------------SCEEEEEECCC------CCE
T ss_pred EcCCCCEEEEEeCC-------------CeEEEEECCCCeEEEEeccC-------------CcEEEEEEccCCCCCCCccE
Confidence 99999999887743 48999999877665554322 3345678888543 3
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~ 492 (958)
++. .+..+.|.+|++ ..+.....+..+...+..++|+|||+.|+..+.++ .|.++++.++
T Consensus 169 l~s-------------~~~d~~i~~wd~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd~~~~- 228 (319)
T 3frx_A 169 IIS-------------AGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWNLAAK- 228 (319)
T ss_dssp EEE-------------EETTSCEEEEET--TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT-
T ss_pred EEE-------------EeCCCEEEEEEC--CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC-
Confidence 332 144567889996 22222233445566778899999999988776443 3555566553
Q ss_pred CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
+....... ...+.. ++|+|||.+|+.... ..+.+|+++.+..........
T Consensus 229 -~~~~~~~~-~~~v~~------~~~sp~~~~la~~~~----------------------~~i~v~~~~~~~~~~~~~~~~ 278 (319)
T 3frx_A 229 -KAMYTLSA-QDEVFS------LAFSPNRYWLAAATA----------------------TGIKVFSLDPQYLVDDLRPEF 278 (319)
T ss_dssp -EEEEEEEC-CSCEEE------EEECSSSSEEEEEET----------------------TEEEEEEETTEEEEEEECCCC
T ss_pred -cEEEEecC-CCcEEE------EEEcCCCCEEEEEcC----------------------CCcEEEEeCcCeeeeccCccc
Confidence 22222222 122333 789999998877652 137777776654433322211
Q ss_pred ccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
..+..... ......+|+|||+.++.-... ..++++++.+
T Consensus 279 ~~~~~~~~---~~v~~~~~spdg~~l~sg~~D----g~i~vWd~~t 317 (319)
T 3frx_A 279 AGYSKAAE---PHAVSLAWSADGQTLFAGYTD----NVIRVWQVMT 317 (319)
T ss_dssp TTCCGGGC---CCEEEEEECTTSSEEEEEETT----SCEEEEEEEE
T ss_pred cccccCcC---cceeEEEECCCCCEEEEeecC----ceEEEEEEee
Confidence 00000000 000135799999987654432 3477777644
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-14 Score=147.09 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=124.0
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av 747 (958)
|.||++||.+.... .|. ..+..|++ +|.|++ .|.+|+|.+..... ......+|+.+.+
T Consensus 17 ~~vvllHG~~~~~~-----------~~~----~~~~~L~~-~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l 77 (269)
T 2xmz_A 17 QVLVFLHGFLSDSR-----------TYH----NHIEKFTD-NYHVIT---IDLPGHGEDQSSMDETWNFDYITTLLDRIL 77 (269)
T ss_dssp EEEEEECCTTCCGG-----------GGT----TTHHHHHT-TSEEEE---ECCTTSTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcHH-----------HHH----HHHHHHhh-cCeEEE---ecCCCCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 45999999653221 121 12445655 499999 66678888765422 3455666666665
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---------------------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--------------------------- 800 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--------------------------- 800 (958)
+.+ +.+++.++||||||.+|+.+|.++|++++++|++++........
T Consensus 78 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (269)
T 2xmz_A 78 DKY------KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVND 151 (269)
T ss_dssp GGG------TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHc------CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHH
Confidence 543 33689999999999999999999999999999998754321100
Q ss_pred CC----cccc---cc----hhhh-----cHH----HHHh------cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 801 FG----FQNE---DR----TLWE-----ATS----TYVE------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 801 ~~----~~~~---~~----~~~~-----~~~----~~~~------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
+. +... .. ..+. .+. .+.. .+....+.++++|+|+++|++|..++ +... ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~-~~ 228 (269)
T 2xmz_A 152 WEKLPLFQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFV--QIAK-KM 228 (269)
T ss_dssp HTTSGGGGGGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHH--HHHH-HH
T ss_pred HHhCccccccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccC--HHHH-HH
Confidence 00 0000 00 0000 000 0000 01123466789999999999999886 5543 35
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+.+ ..+++++++++||... .+....+.+.+.+||.+.
T Consensus 229 ~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 229 ANLI----PNSKCKLISATGHTIH-VEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp HHHS----TTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred HhhC----CCcEEEEeCCCCCChh-hcCHHHHHHHHHHHHHHh
Confidence 4443 2479999999999874 456778888999999764
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=151.23 Aligned_cols=193 Identities=13% Similarity=0.047 Sum_probs=127.6
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCcee-EEEEeccCCCCCCCC-CCc--ccc---cchhhhcHHHHHhcCccccc
Q 002164 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC-CGIARSGAYNRTLTP-FGF--QNE---DRTLWEATSTYVEMSPFMSA 826 (958)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~~~~~~~~~~-~~~--~~~---~~~~~~~~~~~~~~sp~~~~ 826 (958)
..+|++||+|+|+|+||+||+.++..+|++|+ +++++++........ ... ... ....++........+++..+
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHHHHHhhccCCCCCCHHHHHHHhhcccCChh
Confidence 45899999999999999999999999999999 887776632111100 000 000 00111111111111455555
Q ss_pred CCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCC--cEEEEEeCCCCccCCCccc------------------HHH
Q 002164 827 NKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--LCRLVILPFESHGYAARES------------------IMH 885 (958)
Q Consensus 827 ~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~--~~~~~~~p~~~H~~~~~~~------------------~~~ 885 (958)
.+++ .|+||+||++|.+|| +.++++++++|+..+. +++++.+++++|.+..... ..+
T Consensus 86 ~~l~~~Pvli~HG~~D~vVP--~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d 163 (318)
T 2d81_A 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred HcCCCCcEEEEeCCCCCCcC--HHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCCh
Confidence 5554 599999999999999 9999999999998873 7999999999998632221 245
Q ss_pred HHHHHHHHHHHhhccCCC-CCCcc---cccC-cccccCCCCCCCccEEEecCCCCc-cc-cceeeeecccccc
Q 002164 886 VLWETDRWLQKYCVSNTA-DRSTD---LKVS-KDDESKGAPHLQNKTVAASGGGGT-EA-DFEHDGCHLAPRS 951 (958)
Q Consensus 886 ~~~~i~~fl~~~l~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 951 (958)
...+|++||...+..... ..+.. ++|. .+ ..........++++.++.. .. |..|+.+|=|.-+
T Consensus 164 ~~~~i~~ff~g~~~~~~~~~~~~~~~~~~q~~~f---~~~~~~~~~~~yvP~~~~~~~~~~~l~v~lHGc~~~ 233 (318)
T 2d81_A 164 GAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSY---GANGMDTTGYLYVPQSCASGATVCSLHVALHGCLQS 233 (318)
T ss_dssp HHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGG---CCTTBCSEEEEEECHHHHSSSSCEEEEEEECCTTCS
T ss_pred HHHHHHHHHhccCCCCccccccccccccccccCc---CCCCCCcceEEEecCCCCCCCCCCCEEEEecCCCCC
Confidence 678899999887653322 11111 2232 11 1123445566888888864 34 8899999988764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-12 Score=141.84 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=150.6
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC-
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~- 186 (958)
......++|||||++|++...+ .... +.+.+|++..++ +..+.+....
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~---------------------~~~~--------~~v~~~~~~~~~--g~~~~~~~~~~ 97 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEF---------------------SKDQ--------AAVSAFAFDKEK--GTLHLLNTQKT 97 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECC---------------------SSTT--------CEEEEEEEETTT--TEEEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEEcc---------------------CCCC--------CcEEEEEEeCCC--CcEEEeeEecc
Confidence 3456788999999999887753 0000 256777775432 3334443222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC-CceeeccC---CCCcc------ccccccceEEecCCe
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQ---SPDIY------LNAIFDNFVWVNNST 256 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~~lt~---~~~~~------~~~~~~~~~wspDG~ 256 (958)
.+......++ ||++|+++.. ....|.+++++. +....+.. ..... ....+..++|+|||+
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~--------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANY--------SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEET--------TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred CCCCcEEEEE--CCCEEEEEEC--------CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 2223444555 8998877542 245677788763 33322211 01000 001134689999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CC----e-e---
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG----T-V--- 325 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g----~-~--- 325 (958)
+|+++.. ....++++++ ++ + .
T Consensus 168 ~l~~~~~------------------------------------------------~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 168 YLLADDL------------------------------------------------GTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp EEEEEET------------------------------------------------TTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred EEEEEeC------------------------------------------------CCCEEEEEEEcCCCCcccccceeec
Confidence 8887610 1223445544 32 2 1
Q ss_pred ----e-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 326 ----K-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 326 ----~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
. .+..+.....++|||||++|++.... .+.|.+|+++++..+.+....... ....+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~g~~~~~~~~~~~~-------~~~~~ 260 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------------GGTVIAFRYADGMLDEIQTVAADT-------VNAQG 260 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TCEEEEEEEETTEEEEEEEEESCS-------SCCCC
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCC------------CCeEEEEEecCCceEEeEEEecCC-------CCCCC
Confidence 1 12222456788999999999887632 348999999877655443322110 00023
Q ss_pred cceeeeecCCCCceEEEEeccCCCccccccc-CCeEEEEeCCCCCCCCceEEEee--ccccCceeeecCCceEEEEEecc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
...+.|||||+.|++. . .. .+.+.+|++++ .+++.+.+... ......++|||||++|+++...+
T Consensus 261 ~~~i~~spdg~~l~v~-~-----------~~~~~~i~v~~~~~-~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 261 SGDIHLSPDGKYLYAS-N-----------RLKADGVAIFKVDE-TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEEEECTTSSEEEEE-E-----------CSSSCEEEEEEECT-TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred cccEEECCCCCEEEEE-C-----------CCCCCEEEEEEEcC-CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence 4589999999988763 1 12 34567766521 34454444322 23456789999999988775443
Q ss_pred ccceEEEEEcCCCC
Q 002164 478 TRRTRTWVISPGSK 491 (958)
Q Consensus 478 ~~~~~l~~~~~~~~ 491 (958)
+...+|.+++.++
T Consensus 328 -~~v~v~~~d~~~g 340 (361)
T 3scy_A 328 -NVIQIFERDQATG 340 (361)
T ss_dssp -TEEEEEEECTTTC
T ss_pred -CCEEEEEEECCCC
Confidence 3377888988775
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-12 Score=138.89 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=170.7
Q ss_pred CCCCceecCC-CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCC--ceeeeccCC
Q 002164 110 PLPALSFSPQ-RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG--QEIEIQGFP 186 (958)
Q Consensus 110 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~--~~~~lt~~~ 186 (958)
.+..++|||| |++||..+.+ +.|.||++....... ..+.+.+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D---------------------------------~~i~vWd~~~~~~~~~~~~~~l~~-- 84 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRD---------------------------------KTIIMWKLTRDETNYGIPQRALRG-- 84 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETT---------------------------------SCEEEEEECCSSSCSEEEEEEECC--
T ss_pred CEEEEEEeCCCCCEEEEEcCC---------------------------------CeEEEEECCCCCcccceeeEEEeC--
Confidence 5678899998 5778777765 478999986422111 1233433
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
+...+....|+|||+.|+.... ...|++++...+............ .....++++++.|+...
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~---------d~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~s---- 147 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSW---------DGTLRLWDLTTGTTTRRFVGHTKD----VLSVAFSSDNRQIVSGS---- 147 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEE----
T ss_pred CCCCEEEEEECCCCCEEEEEcc---------cccceEEeecccceeeeecCCCCc----eeEEEEeecCccceeec----
Confidence 2347889999999999987552 557888888876655443333222 45677889998888662
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC--CC-ccccccccCCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG--PP-AVYTSLDPSPD 342 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~--~~-~~~~~~~~SpD 342 (958)
....+.++++ ......+. .. ..+....|+++
T Consensus 148 ---------------------------------------------~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 148 ---------------------------------------------RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp ---------------------------------------------TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ---------------------------------------------CCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 1133555666 33222221 12 55677788888
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
+...++.+.. .++.+.+||+..+.... +..+ ...+..+.|+|||+.|+..
T Consensus 183 ~~~~~~~s~~-----------~d~~i~i~d~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~~l~s~----- 233 (340)
T 4aow_A 183 SSNPIIVSCG-----------WDKLVKVWNLANCKLKTNHIGH-------------TGYLNTVTVSPDGSLCASG----- 233 (340)
T ss_dssp SSSCEEEEEE-----------TTSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEE-----
T ss_pred CCCcEEEEEc-----------CCCEEEEEECCCCceeeEecCC-------------CCcEEEEEECCCCCEEEEE-----
Confidence 7654333321 13479999998665433 2221 1345789999999977662
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec-
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD- 500 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 500 (958)
+..+.|.+|++ ...+..........+..+.|+|++..++.. ..+ .|.++++.++ .......
T Consensus 234 --------s~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~----~i~iwd~~~~--~~~~~~~~ 295 (340)
T 4aow_A 234 --------GKDGQAMLWDL---NEGKHLYTLDGGDIINALCFSPNRYWLCAA-TGP----SIKIWDLEGK--IIVDELKQ 295 (340)
T ss_dssp --------ETTCEEEEEET---TTTEEEEEEECSSCEEEEEECSSSSEEEEE-ETT----EEEEEETTTT--EEEEEECC
T ss_pred --------eCCCeEEEEEe---ccCceeeeecCCceEEeeecCCCCceeecc-CCC----EEEEEECCCC--eEEEeccc
Confidence 44567899996 333332223344456778999998765544 222 3555565553 1111111
Q ss_pred --------cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 501 --------RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 501 --------~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
.....+.. ++|+|||++|+....+ ..|++||+++|+
T Consensus 296 ~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~D---------------------g~v~iW~~~tGt 339 (340)
T 4aow_A 296 EVISTSSKAEPPQCTS------LAWSADGQTLFAGYTD---------------------NLVRVWQVTIGT 339 (340)
T ss_dssp C-------CCCCCEEE------EEECTTSSEEEEEETT---------------------SCEEEEEEEC--
T ss_pred cceeeeccCCCCCEEE------EEECCCCCEEEEEeCC---------------------CEEEEEeCCCcC
Confidence 11112222 7899999998876521 259999998885
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=141.31 Aligned_cols=305 Identities=10% Similarity=-0.024 Sum_probs=163.9
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCCCcc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKL 191 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~~~~ 191 (958)
.++++++++.++....+ +.|++|++.+ ++. +.+. .......
T Consensus 4 g~~~~~~~~~~v~~~~~---------------------------------~~v~~~d~~~----~~~~~~~~-~~~~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCV-MPDKFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEE-CSSCCSS
T ss_pred cccccCCCEEEEEeCCC---------------------------------CeEEEEECCC----CcEEEEEe-cCCCCCC
Confidence 56788888877666543 4789999854 332 2332 2221146
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc--ccccccceEEecCCeEEEEEecCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~--~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
..++|||||++++++.. ....|+++++++++.......+... ....+..++|+|||+.|++........
T Consensus 46 ~~~~~s~dg~~~~v~~~--------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~- 116 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL- 116 (349)
T ss_dssp CEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC-
T ss_pred ceeEECCCCCEEEEEeC--------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc-
Confidence 78999999998877542 3568999999988765443322100 000145789999999999872110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee----cCCCccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE----IGPPAVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~----l~~~~~~~~~~~SpDGk 344 (958)
....+ .....|+++++ +|+... +.....+..++|||||+
T Consensus 117 ------------------------------~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 117 ------------------------------NDHYV------VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ------------------------------SSCEE------ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ------------------------------ccccc------cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 00000 01356899998 754322 11224456677999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccc---------ccccc----cCcceeeeecCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA---------FNSVR----KGMRSINWRSDKP 411 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~---------~~~~~----~~~~~~~~spDG~ 411 (958)
|++.. .++++||+++++.......... ..+.. ..... ..+..+.+++|++
T Consensus 161 -l~~~~---------------~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 161 -LYVAG---------------PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp -EEEES---------------SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred -EEEcc---------------CcEEEEeCCCCceecccccccc-CCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 65532 2599999986654332221110 00000 00000 0111233343332
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeec-CCceEEEEEeccccceEEEEEcC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCD-DSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
..... ......++.++. .+++.+.+.. .......+.||| ||+.|+.. . ..|+++|+
T Consensus 224 ~~~~~------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~---~~v~~~d~ 282 (349)
T 1jmx_B 224 QDPAT------------ADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---L---NRLAKYDL 282 (349)
T ss_dssp ---CC------------CEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---E---SEEEEEET
T ss_pred CCccc------------cccceeEEEEec---cCCcEEecccccCCCcceeeEecCCCCCEEEEE---c---CeEEEEEC
Confidence 21110 011112334664 4555554432 223455689999 99988776 2 36889998
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
.++ +........ ..... ++|+|||++|+.... ...|++||+++++.....
T Consensus 283 ~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~---------------------~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 283 KQR--KLIKAANLD-HTYYC------VAFDKKGDKLYLGGT---------------------FNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp TTT--EEEEEEECS-SCCCE------EEECSSSSCEEEESB---------------------SSEEEEEETTTTEEEEEE
T ss_pred ccC--eEEEEEcCC-CCccc------eEECCCCCEEEEecC---------------------CCeEEEEeccccceeeee
Confidence 874 222222211 11122 789999998877431 126999999888755443
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=143.30 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=126.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||.+.... .| ......|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 4 ~~~vvllHG~~~~~~-----------~w----~~~~~~L~~~g~rVia---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 65 (273)
T 1xkl_A 4 GKHFVLVHGACHGGW-----------SW----YKLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL 65 (273)
T ss_dssp CCEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCcc-----------hH----HHHHHHHHhCCCEEEE---ecCCCCCCCccCcccccCHHHHHHHHHHH
Confidence 367899999642211 11 1245577889999999 6677888875421 1345556666555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC-CC---------------CC------cc
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-TP---------------FG------FQ 804 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~-~~---------------~~------~~ 804 (958)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++...... .. +. +.
T Consensus 66 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T 1xkl_A 66 MESL---SA--DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYG 140 (273)
T ss_dssp HHTS---CS--SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECS
T ss_pred HHHh---cc--CCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhcc
Confidence 4432 21 25899999999999999999999999999999876421100 00 00 00
Q ss_pred ---cccchhhhcHH---------------HHH--hcCcc----------ccc---CCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 805 ---NEDRTLWEATS---------------TYV--EMSPF----------MSA---NKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 805 ---~~~~~~~~~~~---------------~~~--~~sp~----------~~~---~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
........... .+. ...+. ..+ ...++|+|+++|++|..+| +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~ 218 (273)
T 1xkl_A 141 SPEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQ 218 (273)
T ss_dssp CTTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHH
T ss_pred CCCCCccccccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCC--HHHH
Confidence 00000000000 000 00010 001 1136899999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+++.+.+.. .+++++|++||... .+....+.+.+.+|+.+..
T Consensus 219 ~~~~~~~p~----~~~~~i~~aGH~~~-~e~P~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 219 RWQIDNIGV----TEAIEIKGADHMAM-LCEPQKLCASLLEIAHKYN 260 (273)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCC----CeEEEeCCCCCCch-hcCHHHHHHHHHHHHHHhc
Confidence 888777753 48899999999873 5667788899999998754
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=144.77 Aligned_cols=208 Identities=10% Similarity=0.049 Sum_probs=130.9
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~ 729 (958)
.+++....-|.+ ..|.||++||.+.... .|. .....|+++||.|++ .|.+|+|.+
T Consensus 33 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~~-----------~w~----~~~~~L~~~g~rvia---~Dl~G~G~S 87 (297)
T 2xt0_A 33 LRMHYVDEGPRD-------AEHTFLCLHGEPSWSF-----------LYR----KMLPVFTAAGGRVVA---PDLFGFGRS 87 (297)
T ss_dssp CCEEEEEESCTT-------CSCEEEEECCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEccCCC-------CCCeEEEECCCCCcce-----------eHH----HHHHHHHhCCcEEEE---eCCCCCCCC
Confidence 788776654321 0367889999653221 111 234578889999999 667788888
Q ss_pred ccch---h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CCC--
Q 002164 730 EAND---R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PFG-- 802 (958)
Q Consensus 730 ~~~~---~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~~-- 802 (958)
..+. . ......+|+.+.++.+ + .+++.|+||||||.+++.+|.++|++++++|++++....... ...
T Consensus 88 ~~~~~~~~~~~~~~a~dl~~ll~~l---~---~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 161 (297)
T 2xt0_A 88 DKPTDDAVYTFGFHRRSLLAFLDAL---Q---LERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFE 161 (297)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH---T---CCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHh---C---CCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHH
Confidence 6432 1 2456677777776665 2 258999999999999999999999999999998874311100 000
Q ss_pred -c------cccc----------ch-------h----hhcH------HHHHhcC--------------cccccC-CCCCCE
Q 002164 803 -F------QNED----------RT-------L----WEAT------STYVEMS--------------PFMSAN-KLKKPI 833 (958)
Q Consensus 803 -~------~~~~----------~~-------~----~~~~------~~~~~~s--------------p~~~~~-~~~~P~ 833 (958)
+ .... .. . +... ..+.... ....+. ++++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 241 (297)
T 2xt0_A 162 SWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPT 241 (297)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHhhcccccchhHHHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCe
Confidence 0 0000 00 0 0000 0000000 011345 889999
Q ss_pred EEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
|+++|++|..+| ..+.++.+.+... ....+.++++||... . ....+.+.+.+||.
T Consensus 242 Lvi~G~~D~~~~---~~~~~~~~~~p~~--~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 242 FMAVGAQDPVLG---PEVMGMLRQAIRG--CPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp EEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred EEEEeCCCcccC---hHHHHHHHhCCCC--eeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 999999999875 5677777766543 233334799999975 4 66778888888874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=142.64 Aligned_cols=267 Identities=6% Similarity=-0.012 Sum_probs=169.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|++|++.........+.+.. ...
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------~~v~iw~~~~~~~~~~~~~~~~--~~~ 57 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQAKNVDLLQSLR--YKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTTTEEEEEEEEE--CSS
T ss_pred cEEEEEEcCCCCEEEEEcCC---------------------------------CeEEEEEeCCCCccccceeeee--cCC
Confidence 46688999999999988765 4789999865110001333433 335
Q ss_pred cccceeecCCCC-eEEEEEeeccccCCCCCceEEEEEc-CCCceeeccC--CCCccccccccceEEecCCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQ--SPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~~~-~~g~~~~lt~--~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
.+..+.|+|||+ .|+... ....|++|++ .+++...+.. .... +..++|+| ++.|+...
T Consensus 58 ~v~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~-----v~~l~~~~-~~~l~s~~--- 119 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGT---------VQGEILKVDLIGSPSFQALTNNEANLG-----ICRICKYG-DDKLIAAS--- 119 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE---------TTSCEEEECSSSSSSEEECBSCCCCSC-----EEEEEEET-TTEEEEEE---
T ss_pred ceEEEEECCCCCcEEEEEc---------CCCeEEEEEeccCCceEeccccCCCCc-----eEEEEeCC-CCEEEEEc---
Confidence 789999999999 888754 2568999999 8888877655 3332 77899999 88888661
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C---------Ceee-ecCCCccc
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D---------GTVK-EIGPPAVY 334 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~---------g~~~-~l~~~~~~ 334 (958)
....|.++++ + ++.. .+.....+
T Consensus 120 ----------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 153 (342)
T 1yfq_A 120 ----------------------------------------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp ----------------------------------------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred ----------------------------------------------CCCeEEEEcccccccccccccCCeeeEEeeCCce
Confidence 1234666666 4 4322 22222677
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceE--EEeccCCccccCcccccccccCcceeeeec-CC
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-DG 410 (958)
..++|+||+ |+.... ++.+.+||+.+ ... ..... . ....+..+.|+| ||
T Consensus 154 ~~~~~~~~~--l~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~-~-----------~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMN-------------NSQVQWFRLPLCEDDNGTIEES-G-----------LKYQIRDVALLPKEQ 206 (342)
T ss_dssp EEEEECSSE--EEEEES-------------TTEEEEEESSCCTTCCCEEEEC-S-----------CSSCEEEEEECSGGG
T ss_pred EEEEecCCc--EEEEeC-------------CCeEEEEECCccccccceeeec-C-----------CCCceeEEEECCCCC
Confidence 889999998 555542 34899999986 321 11111 0 113457899999 99
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCC-----CCCceEEEeecc---------ccCceeeecCCceEEEEEec
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-----GEGPEILHKLDL---------RYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----g~~~~~l~~~~~---------~~~~~~~spDg~~l~~~~~~ 476 (958)
+.++.. +..+.+.+|+.+. . ......+..... .+..+.|+|||+.|+.....
T Consensus 207 ~~l~~~-------------~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 207 EGYACS-------------SIDGRVAVEFFDD-QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp CEEEEE-------------ETTSEEEEEECCT-TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred CEEEEE-------------ecCCcEEEEEEcC-CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 887763 3455677777521 2 133344443322 67789999999998876543
Q ss_pred cccceEEEEEcCCCCCCCcEEEeccC-CccccCCCCCCceEeccCCceEEEEeee
Q 002164 477 KTRRTRTWVISPGSKDVAPRILFDRS-SEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (958)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (958)
+ .|+++++.++ +........ ...+.. ++ |||++|+....+
T Consensus 273 g----~i~vwd~~~~--~~~~~~~~~h~~~v~~------~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 273 G----IISCWNLQTR--KKIKNFAKFNEDSVVK------IA--CSDNILCLATSD 313 (342)
T ss_dssp S----CEEEEETTTT--EEEEECCCCSSSEEEE------EE--ECSSEEEEEEEC
T ss_pred c----eEEEEcCccH--hHhhhhhcccCCCceE------ec--CCCCeEEEEecC
Confidence 3 3666676653 222233222 222222 33 999999888743
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=146.66 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=132.9
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~ 729 (958)
.+++....-|.+ +.|.||++||.+.... .|. .....|+++||.|++ .|.+|+|.+
T Consensus 34 ~~l~y~~~G~~~-------~g~~vvllHG~~~~~~-----------~w~----~~~~~L~~~g~rvia---~Dl~G~G~S 88 (310)
T 1b6g_A 34 LRAHYLDEGNSD-------AEDVFLCLHGEPTWSY-----------LYR----KMIPVFAESGARVIA---PDFFGFGKS 88 (310)
T ss_dssp CEEEEEEEECTT-------CSCEEEECCCTTCCGG-----------GGT----TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEeCCCC-------CCCEEEEECCCCCchh-----------hHH----HHHHHHHhCCCeEEE---eCCCCCCCC
Confidence 888877664421 0367899999753221 111 234578889999999 667788888
Q ss_pred ccch---h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC--CC------
Q 002164 730 EAND---R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--RT------ 797 (958)
Q Consensus 730 ~~~~---~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~--~~------ 797 (958)
..+. . ......+|+.+.++.| + -+++.|+||||||.+|+.+|.++|++++++|++++... ..
T Consensus 89 ~~~~~~~~y~~~~~a~dl~~ll~~l---~---~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~ 162 (310)
T 1b6g_A 89 DKPVDEEDYTFEFHRNFLLALIERL---D---LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFS 162 (310)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH---T---CCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHH
T ss_pred CCCCCcCCcCHHHHHHHHHHHHHHc---C---CCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchh
Confidence 6532 2 2456677777777665 2 25899999999999999999999999999999886432 10
Q ss_pred ----CCCCC---c------cccc----------chhhh-cHHHHH----------------h--cC-----------ccc
Q 002164 798 ----LTPFG---F------QNED----------RTLWE-ATSTYV----------------E--MS-----------PFM 824 (958)
Q Consensus 798 ----~~~~~---~------~~~~----------~~~~~-~~~~~~----------------~--~s-----------p~~ 824 (958)
..... + .... ...-. ....|. . .. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 1b6g_A 163 AFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAIS 242 (310)
T ss_dssp HTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhh
Confidence 00000 0 0000 00000 000000 0 00 012
Q ss_pred ccC-CCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe--CCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 825 SAN-KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL--PFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 825 ~~~-~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~--p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+. ++++|+|+++|++|..+| ..+.++.+.+... +++++ |++||... . ....+.+.+.+||.+
T Consensus 243 ~l~~~i~~P~Lvi~G~~D~~~~---~~~~~~~~~ip~~----~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 243 FWQNDWNGQTFMAIGMKDKLLG---PDVMYPMKALING----CPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp HHHHTCCSEEEEEEETTCSSSS---HHHHHHHHHHSTT----CCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEeccCcchhh---hHHHHHHHhcccc----cceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 345 899999999999999874 5667777766543 44444 99999975 4 778888999999875
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=153.44 Aligned_cols=205 Identities=15% Similarity=0.117 Sum_probs=128.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~ 728 (958)
+..++...+-+. .|+||++||.+.... .+...+...||.|++ .|.+|+|.
T Consensus 69 ~~~~~~~~~g~~---------~~~vv~~hG~~~~~~------------------~~~~~~~~lg~~Vi~---~D~~G~G~ 118 (330)
T 3p2m_A 69 AGAISALRWGGS---------APRVIFLHGGGQNAH------------------TWDTVIVGLGEPALA---VDLPGHGH 118 (330)
T ss_dssp ETTEEEEEESSS---------CCSEEEECCTTCCGG------------------GGHHHHHHSCCCEEE---ECCTTSTT
T ss_pred CceEEEEEeCCC---------CCeEEEECCCCCccc------------------hHHHHHHHcCCeEEE---EcCCCCCC
Confidence 445666655321 467999999642210 112233445999999 55567777
Q ss_pred cccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC---------
Q 002164 729 EEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR--------- 796 (958)
Q Consensus 729 ~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~--------- 796 (958)
+... ........+|+.++++.+ +.+++.|+|||+||.+++.+|.++|++++++|++++....
T Consensus 119 S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 192 (330)
T 3p2m_A 119 SAWREDGNYSPQLNSETLAPVLREL------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTA 192 (330)
T ss_dssp SCCCSSCBCCHHHHHHHHHHHHHHS------STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhh
Confidence 7532 122455566666666553 3468999999999999999999999999999999864210
Q ss_pred CC---C-----CCCcccccc--------hhhhcHHHHHh-----------------cC----------cccccCCCCCCE
Q 002164 797 TL---T-----PFGFQNEDR--------TLWEATSTYVE-----------------MS----------PFMSANKLKKPI 833 (958)
Q Consensus 797 ~~---~-----~~~~~~~~~--------~~~~~~~~~~~-----------------~s----------p~~~~~~~~~P~ 833 (958)
.. . ...+..... ........+.. .. ....+.++++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 272 (330)
T 3p2m_A 193 EQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPI 272 (330)
T ss_dssp C-----------CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCE
T ss_pred hhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCE
Confidence 00 0 000000000 00000000000 00 012345678999
Q ss_pred EEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE-EEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR-LVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~-~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
|+++|++|..+| ++.++++.+.+.. .+ +++++++||.+. .+....+.+.|.+||.+
T Consensus 273 Lii~G~~D~~v~--~~~~~~l~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 273 TLVRGGSSGFVT--DQDTAELHRRATH----FRGVHIVEKSGHSVQ-SDQPRALIEIVRGVLDT 329 (330)
T ss_dssp EEEEETTCCSSC--HHHHHHHHHHCSS----EEEEEEETTCCSCHH-HHCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCC--HHHHHHHHHhCCC----CeeEEEeCCCCCCcc-hhCHHHHHHHHHHHHhc
Confidence 999999999998 8888888776643 56 999999999873 45667777888888754
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=147.29 Aligned_cols=209 Identities=8% Similarity=-0.077 Sum_probs=133.2
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
..+|.+++...+- +.|+||++||.+.... .|. ..+..|+ .+|.|++ .+.+|
T Consensus 14 ~~~g~~l~~~~~g----------~~~~vv~lHG~~~~~~-----------~~~----~~~~~l~-~~~~vi~---~D~~G 64 (297)
T 2qvb_A 14 EIAGKRMAYIDEG----------KGDAIVFQHGNPTSSY-----------LWR----NIMPHLE-GLGRLVA---CDLIG 64 (297)
T ss_dssp EETTEEEEEEEES----------SSSEEEEECCTTCCGG-----------GGT----TTGGGGT-TSSEEEE---ECCTT
T ss_pred EECCEEEEEEecC----------CCCeEEEECCCCchHH-----------HHH----HHHHHHh-hcCeEEE---EcCCC
Confidence 3478888766552 1478999999753221 111 1122344 4599999 55667
Q ss_pred CCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 726 EGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 726 ~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+|.+.... .......+|+.++++.+ +. +++.++|||+||.+++.++.++|++++++|++++......
T Consensus 65 ~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~ 138 (297)
T 2qvb_A 65 MGASDKLSPSGPDRYSYGEQRDFLFALWDAL------DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMT 138 (297)
T ss_dssp STTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBC
T ss_pred CCCCCCCCCccccCcCHHHHHHHHHHHHHHc------CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCcc
Confidence 77765432 23456667777766553 33 6899999999999999999999999999999998653110
Q ss_pred C-CCC-----------cc----------------------cccc---------------hhhhcH-HHHHhc--------
Q 002164 799 T-PFG-----------FQ----------------------NEDR---------------TLWEAT-STYVEM-------- 820 (958)
Q Consensus 799 ~-~~~-----------~~----------------------~~~~---------------~~~~~~-~~~~~~-------- 820 (958)
. ... .. .... ...... ..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
T 2qvb_A 139 WADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAE 218 (297)
T ss_dssp GGGSCGGGHHHHHHHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHH
T ss_pred CCCCChHHHHHHHHHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchh
Confidence 0 000 00 0000 000000 000000
Q ss_pred ------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 821 ------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 821 ------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+....+.++++|+|+++|++|..+| ++...++.+.+ .. +++++ ++||... .++...+.+.+.+||
T Consensus 219 ~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~~~p~~~~~~i~~fl 289 (297)
T 2qvb_A 219 VVALVNEYRSWLEETDMPKLFINAEPGAIIT--GRIRDYVRSWP----NQ-TEITV-PGVHFVQ-EDSPEEIGAAIAQFV 289 (297)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHTSS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccccEEEEecCCCCcCC--HHHHHHHHHHc----CC-eEEEe-cCccchh-hhCHHHHHHHHHHHH
Confidence 1123345688999999999999998 77776665543 23 88888 9999864 566778889999999
Q ss_pred HHhh
Q 002164 895 QKYC 898 (958)
Q Consensus 895 ~~~l 898 (958)
++..
T Consensus 290 ~~~~ 293 (297)
T 2qvb_A 290 RRLR 293 (297)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=146.74 Aligned_cols=210 Identities=12% Similarity=0.065 Sum_probs=126.0
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
..+|.+++....- + .|.||++||.+.... .| ...+..|++ ||.|++ .+.+|
T Consensus 19 ~~~g~~l~~~~~g-------~---~~~vv~lHG~~~~~~-----------~~----~~~~~~l~~-~~~v~~---~D~~G 69 (306)
T 3r40_A 19 NTSSGRIFARVGG-------D---GPPLLLLHGFPQTHV-----------MW----HRVAPKLAE-RFKVIV---ADLPG 69 (306)
T ss_dssp CCTTCCEEEEEEE-------C---SSEEEEECCTTCCGG-----------GG----GGTHHHHHT-TSEEEE---ECCTT
T ss_pred EeCCEEEEEEEcC-------C---CCeEEEECCCCCCHH-----------HH----HHHHHHhcc-CCeEEE---eCCCC
Confidence 3488888766642 1 478999999642211 11 123445666 999999 56667
Q ss_pred CCCcccchh-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 726 EGDEEANDR-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 726 ~G~~~~~~~-------~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
+|.+..... ......+|+.+.++.+ +.+++.++|||+||.+++.+|.++|++++++|++++......
T Consensus 70 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 143 (306)
T 3r40_A 70 YGWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEY 143 (306)
T ss_dssp STTSCCCCCCTTCGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHH
T ss_pred CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHh------CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccc
Confidence 777754322 2455566666665543 345899999999999999999999999999999986421000
Q ss_pred -------------------CC----------------------CC----cccccch-------hhhcH-------HHHHh
Q 002164 799 -------------------TP----------------------FG----FQNEDRT-------LWEAT-------STYVE 819 (958)
Q Consensus 799 -------------------~~----------------------~~----~~~~~~~-------~~~~~-------~~~~~ 819 (958)
.. +. ....... .+..+ ..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T 3r40_A 144 WQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRA 223 (306)
T ss_dssp HHHCSHHHHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHh
Confidence 00 00 0000000 00000 00000
Q ss_pred c---------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 820 M---------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 820 ~---------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
. .....+.++++|+|+++|++|..++ +....+.++.+.. .++++++ ++||... .++...+.+.|
T Consensus 224 ~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~-~~gH~~~-~e~p~~~~~~i 296 (306)
T 3r40_A 224 GAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQS--AATPLDVWRKWAS---DVQGAPI-ESGHFLP-EEAPDQTAEAL 296 (306)
T ss_dssp HHTHHHHHHHHHHHHTCCBCSCEEEEEETTCC--------CHHHHHHHBS---SEEEEEE-SSCSCHH-HHSHHHHHHHH
T ss_pred cccccchhhhhhhhhccCCCcceEEEEecCCcccC--chhHHHHHHhhcC---CCeEEEe-cCCcCch-hhChHHHHHHH
Confidence 0 0001357889999999999999987 5665555555432 4677777 6799863 56677788889
Q ss_pred HHHHHHh
Q 002164 891 DRWLQKY 897 (958)
Q Consensus 891 ~~fl~~~ 897 (958)
.+||.+.
T Consensus 297 ~~fl~~~ 303 (306)
T 3r40_A 297 VRFFSAA 303 (306)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=153.56 Aligned_cols=297 Identities=10% Similarity=0.026 Sum_probs=179.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC-CceeeeccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-GQEIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~-~~~~~lt~~~~~ 188 (958)
.+..++|||||++||+.... .+.+|++.+.... ...+.+.+ +.
T Consensus 20 ~v~~~~~spdg~~l~~~~~~----------------------------------~v~v~~~~~~~~~~~~~~~~~~--h~ 63 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTG--HG 63 (615)
T ss_dssp CCCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECT--TT
T ss_pred ceeEEEECCCCCEEEEecCC----------------------------------eEEEEECCCCCCccccceEEec--CC
Confidence 57789999999999998853 7899998641100 13444543 33
Q ss_pred Cc-ccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCC------ceeec--cCCCCccccccccceEEecCCeE
Q 002164 189 AK-LNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTG------KARPL--FQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 189 ~~-~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g------~~~~l--t~~~~~~~~~~~~~~~wspDG~~ 257 (958)
.. +...+||| ||++|+.... ...|.+|++.++ +...+ ...... .+..++|+|||+.
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~ 130 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDE---------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----PISDISWDFEGRR 130 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEET---------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----CEEEEEECTTSSE
T ss_pred CceEEEEEECcCCCCCEEEEecC---------CCEEEEEeCCCCcccccccccccchhhcccc----cEEEEEEeCCCCE
Confidence 46 89999999 9999998652 456777787654 22222 111122 2778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccc
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTS 336 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~ 336 (958)
|++...+.. ....|++++.......+... ..+..
T Consensus 131 l~~~~~~~~---------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 131 LCVVGEGRD---------------------------------------------NFGVFISWDSGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEECCSS---------------------------------------------CSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred EEEeccCCC---------------------------------------------CccEEEEEECCCcceeeecCCccEEE
Confidence 997721100 12346666643344445444 67889
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecC-CCCce
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSD-KPSTL 414 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spD-G~~l~ 414 (958)
++|+|||+.++++... ++.+.+||+...+.. .+..+... ...+..+.|+|| |+.++
T Consensus 166 ~~~~~~~~~~l~~~~~------------d~~v~vwd~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHHKQ----------GSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp EEECSSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSSCT----------TCCEEEEEECSTTCCEEE
T ss_pred EEECCCCCcEEEEEeC------------CCcEEEEeCCCcceeeeecccCCC----------CceEEEEEECCCCCCEEE
Confidence 9999999954444422 348999999865543 33222110 014578999999 88777
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-E---eeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-H---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.. +..+.|++|++ ..+.....+ . .....+..+.|+ +++.|+.....+ .|.++++..
T Consensus 224 ~~-------------~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~~wd~~~ 283 (615)
T 1pgu_A 224 TV-------------GSDRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA----TIRVWDVTT 283 (615)
T ss_dssp EE-------------ETTCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS----EEEEEETTT
T ss_pred EE-------------eCCCeEEEEEC--CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC----cEEEEECCC
Confidence 63 44567899996 233333334 2 456667889999 999888775433 355566665
Q ss_pred CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
+ +.............. ....+.|+ ++++++....+ ..|++||+.+++.....
T Consensus 284 ~--~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~~---------------------g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 284 S--KCVQKWTLDKQQLGN--QQVGVVAT-GNGRIISLSLD---------------------GTLNFYELGHDEVLKTI 335 (615)
T ss_dssp T--EEEEEEECCTTCGGG--CEEEEEEE-ETTEEEEEETT---------------------SCEEEEETTEEEEEEEE
T ss_pred C--cEEEEEcCCCCcccC--ceeEEEeC-CCCeEEEEECC---------------------CCEEEEECCCCcEEEEE
Confidence 3 222222222100000 00014454 77777766521 25888888776554443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-12 Score=139.40 Aligned_cols=291 Identities=13% Similarity=0.066 Sum_probs=169.1
Q ss_pred Ccccceee-----cC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCc-------ee-eccCCCCccccccccceEEecC
Q 002164 189 AKLNFVTW-----SQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------AR-PLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~w-----SP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-------~~-~lt~~~~~~~~~~~~~~~wspD 254 (958)
..+....| +| ||+.|+.... ...|.+|++..++ .. .+..+.. .+..++|+||
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~---------D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSR---------DKTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEET---------TSCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcC---------CCEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 46788888 77 9988887552 4467777765432 11 2222222 2778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~- 331 (958)
+++|+... ....|.++++ +|+. ..+...
T Consensus 88 ~~~l~s~s-------------------------------------------------~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSS-------------------------------------------------WDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEE-------------------------------------------------TTSEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEc-------------------------------------------------CCCcEEEEECCCCcEEEEEcCCC
Confidence 99888661 2245777888 6643 344444
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..++|||||++|+..+. ++.|.+||+.+.....+.... .....+..+.|+|+++
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~-------------d~~i~~wd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGA-------------EREIKLWNILGECKFSSAEKE----------NHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEET-------------TSCEEEEESSSCEEEECCTTT----------SCSSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcC-------------CCEEEEEeccCCceeeeeccc----------CCCceeeeeeeccccc
Confidence 67889999999999987763 348999999865443332211 1113456788999884
Q ss_pred C----------ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 412 S----------TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 412 ~----------l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
. ++. .+..+.|.+|+. .+.....+..+...+..++|+|||++|+..+.++
T Consensus 176 ~~~~~~~~~~~l~s-------------~~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg---- 235 (343)
T 2xzm_R 176 SANKVQPFAPYFAS-------------VGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK---- 235 (343)
T ss_dssp SCSCCCSSCCEEEE-------------EETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC----
T ss_pred cccccCCCCCEEEE-------------EcCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEcCCC----
Confidence 2 222 244567889984 4433344455666788899999999998776443
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
.|.++++... .......... ..+.. ++|+|++++++.... ..+.+||+.+
T Consensus 236 ~v~iwd~~~~-~~~~~~~~~~-~~v~~------v~~sp~~~~la~~~d----------------------~~v~iw~~~~ 285 (343)
T 2xzm_R 236 KLLIWDILNL-TYPQREFDAG-STINQ------IAFNPKLQWVAVGTD----------------------QGVKIFNLMT 285 (343)
T ss_dssp EEEEEESSCC-SSCSEEEECS-SCEEE------EEECSSSCEEEEEES----------------------SCEEEEESSS
T ss_pred eEEEEECCCC-cccceeecCC-CcEEE------EEECCCCCEEEEECC----------------------CCEEEEEeCC
Confidence 2444454222 1122222111 11222 789999987765431 1388899877
Q ss_pred CceEEEecCCccccc--ceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 562 GSKERIWESDKEKYY--ETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 562 g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
++...+..-...... .........-...+|+|||+.++.-.. ...+.++++.+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----Dg~v~~w~~~~g 341 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT----DGVIRTFSFETS 341 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET----TSEEEEEEEEEE
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC----CceEEEEEEEcc
Confidence 654332111100000 000000000123679999987765433 245777765443
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=142.20 Aligned_cols=196 Identities=9% Similarity=-0.005 Sum_probs=123.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (958)
.|.||++||.+.... .| ......|+++||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 10 g~~vvllHG~~~~~~-----------~w----~~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 71 (264)
T 2wfl_A 10 QKHFVLVHGGCLGAW-----------IW----YKLKPLLESAGHKVTA---VDLSAAGINPRRLDEIHTFRDYSEPLMEV 71 (264)
T ss_dssp CCEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCccccc-----------hH----HHHHHHHHhCCCEEEE---eecCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 577999999642211 11 1245577889999999 6667888875421 2345666676666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC-CCCCC----------C---ccc-------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLTPF----------G---FQN------- 805 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~~~----------~---~~~------- 805 (958)
++.+ +. .+++.|+||||||.+++.++.++|++++++|++++.... ..... . +..
T Consensus 72 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (264)
T 2wfl_A 72 MASI---PP--DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYG 146 (264)
T ss_dssp HHHS---CT--TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEES
T ss_pred HHHh---CC--CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhcc
Confidence 6553 21 258999999999999999999999999999998764211 00000 0 000
Q ss_pred ---c------cc-hh-----hh--cHH--HHH--hcCcc----------ccc--C-CCCCCEEEEeeCCCCCCCCChHHH
Q 002164 806 ---E------DR-TL-----WE--ATS--TYV--EMSPF----------MSA--N-KLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 806 ---~------~~-~~-----~~--~~~--~~~--~~sp~----------~~~--~-~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
. .. .. +. ..+ .+. ...+. ... . ..++|+|+++|++|..+| +..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~ 224 (264)
T 2wfl_A 147 NPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFP--VEFQ 224 (264)
T ss_dssp CTTSCEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHH
T ss_pred CCCCCcchhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCC--HHHH
Confidence 0 00 00 00 000 000 00010 001 1 135799999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+++.+.+.. .+++++|++||... .+....+.+.+.+|+.
T Consensus 225 ~~~~~~~p~----~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 225 KWFVESVGA----DKVKEIKEADHMGM-LSQPREVCKCLLDISD 263 (264)
T ss_dssp HHHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred HHHHHhCCC----ceEEEeCCCCCchh-hcCHHHHHHHHHHHhh
Confidence 888777753 48899999999873 5666777888888864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=143.61 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=154.1
Q ss_pred ceeEEEccCCCCCCceeeeccCC---CCCcccceeecCC----CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccC
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFP---DGAKLNFVTWSQD----GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ 236 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~---~~~~~~~~~wSPD----G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 236 (958)
.|.+|++... ...+.+..+. ....+...+|+|| |+.|+... ....|.+|++.+++......
T Consensus 45 ~v~vw~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 45 RVTLYECHSQ---GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---------SRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp EEEEEEECGG---GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE---------TTCEEEEECTTTCCEEEEEE
T ss_pred EEEEEEcCCC---cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec---------CCCEEEEEEchhceEeeeec
Confidence 6889998642 2233333221 2246888999999 55677644 25689999999887655444
Q ss_pred CCCccccccccceEEec-CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcce
Q 002164 237 SPDIYLNAIFDNFVWVN-NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (958)
Q Consensus 237 ~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~ 315 (958)
..... +..++|+| |++.|+... ....
T Consensus 113 ~~~~~----i~~~~~~~~~~~~l~s~~-------------------------------------------------~dg~ 139 (366)
T 3k26_A 113 GHGNA----INELKFHPRDPNLLLSVS-------------------------------------------------KDHA 139 (366)
T ss_dssp SCCSC----EEEEEECSSCTTEEEEEE-------------------------------------------------TTSC
T ss_pred CCCCc----EEEEEECCCCCCEEEEEe-------------------------------------------------CCCe
Confidence 33322 77999999 888888761 2245
Q ss_pred EEEEEc-CCeeeecC----CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-ecc----C
Q 002164 316 LVLVSL-DGTVKEIG----PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCD----L 384 (958)
Q Consensus 316 l~~~~~-~g~~~~l~----~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~----~ 384 (958)
|.++++ +++..... .. ..+..++|+|||+.|+....+ +.+.+||+.++.... +.. .
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHHHHHHHHHHHTCC
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCccccccceeEEec
Confidence 788888 66544332 23 778899999999999887733 489999998643211 110 0
Q ss_pred CccccC---------cc--cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC------
Q 002164 385 PLAEDI---------PI--AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------ 447 (958)
Q Consensus 385 ~~~~~~---------p~--~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------ 447 (958)
+..... +. ........+..+.|+ |+.++.. +..+.|.+|++ ..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-------------~~d~~i~~wd~--~~~~~~~~~~~ 269 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK-------------SCENAIVCWKP--GKMEDDIDKIK 269 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE-------------CSSSEEEEEEE--SSTTCCGGGCC
T ss_pred CCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE-------------ecCCEEEEEeC--CCccccccccc
Confidence 000000 00 001122445677887 5544442 44567888886 12211
Q ss_pred --------ceEEEeeccccCceeeecC--CceEEEEEeccccceEEEEEcCCCCCCCc--EEEeccC--CccccCCCCCC
Q 002164 448 --------PEILHKLDLRYGGISWCDD--SLALVYESWYKTRRTRTWVISPGSKDVAP--RILFDRS--SEDVYSDPGSP 513 (958)
Q Consensus 448 --------~~~l~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~ 513 (958)
...+......+..+.|+|| |+.|+.....+ .|+++++.++.... ....... ...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~----- 340 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG----KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ----- 340 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS----CEEEEECCSSSGGGCEEEEECCTTCCSCEEE-----
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC----cEEEEECCCCCCccccceEEcccccCCceEE-----
Confidence 2222334556778999999 99888775433 25555555532111 1122222 223333
Q ss_pred ceEeccCCceEEEEe
Q 002164 514 MMRRTSTGTYVIAKI 528 (958)
Q Consensus 514 ~~~~spdG~~l~~~~ 528 (958)
+.|+|||++|+...
T Consensus 341 -~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 341 -TSFSRDSSILIAVC 354 (366)
T ss_dssp -EEECTTSSEEEEEE
T ss_pred -EEeCCCCCeEEEEe
Confidence 78999999988776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-12 Score=145.11 Aligned_cols=271 Identities=14% Similarity=0.048 Sum_probs=164.1
Q ss_pred eceeEEEccCCCCCC-ceeeeccCCCCCcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCc-------e-e
Q 002164 163 TGIGIHQLFPDGKLG-QEIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------A-R 232 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~-~~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-------~-~ 232 (958)
+.|.+|++...+... ....+.+ +...+....|+| |++.|+... ....|.+|++.++. . .
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~~l~s~s---------~dg~v~vw~~~~~~~~~~~~~~~~ 125 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCG--HTAPVLDIAWCPHNDNVIASGS---------EDCTVMVWEIPDGGLVLPLREPVI 125 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCC--CSSCEEEEEECTTCTTEEEEEE---------TTSEEEEEECCTTCCSSCBCSCSE
T ss_pred CEEEEEECccCCCCCCCCceEec--CCCCEEEEEeCCCCCCEEEEEe---------CCCeEEEEEccCCCCccccCCceE
Confidence 478999985533221 1222333 334789999999 888888754 25578888888763 2 2
Q ss_pred eccCCCCccccccccceEEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHh
Q 002164 233 PLFQSPDIYLNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY 311 (958)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~ 311 (958)
.+..... .+..++|+|+| ..|+...
T Consensus 126 ~~~~h~~-----~v~~~~~~p~~~~~l~s~~------------------------------------------------- 151 (402)
T 2aq5_A 126 TLEGHTK-----RVGIVAWHPTAQNVLLSAG------------------------------------------------- 151 (402)
T ss_dssp EEECCSS-----CEEEEEECSSBTTEEEEEE-------------------------------------------------
T ss_pred EecCCCC-----eEEEEEECcCCCCEEEEEc-------------------------------------------------
Confidence 2222222 27789999998 4666541
Q ss_pred hcceEEEEEc-CCeee-ec--CCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-Ee-ccC
Q 002164 312 ATTQLVLVSL-DGTVK-EI--GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-EL-CDL 384 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~-~l--~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l-~~~ 384 (958)
....|.++++ +++.. .+ ... ..+..++|+|||+.|+..+.+ +.|.+||+..+... .+ ..+
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeeccCC
Confidence 2245778888 66543 44 233 678899999999999988733 48999999865543 33 111
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE--eeccccCcee
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGIS 462 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~ 462 (958)
.. ..+..+.|+|||+.++.... ....+.|.+|++ ..+.....+. .....+..+.
T Consensus 219 ~~------------~~~~~~~~~~~~~~l~~g~~----------~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 219 EG------------TRPVHAVFVSEGKILTTGFS----------RMSERQVALWDT--KHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp CS------------SSCCEEEECSTTEEEEEEEC----------TTCCEEEEEEET--TBCSSCSEEEECCCCSSCEEEE
T ss_pred CC------------CcceEEEEcCCCcEEEEecc----------CCCCceEEEEcC--ccccCCceEEeccCCCceeEEE
Confidence 10 12467899999986665210 024567899996 2333322222 2344567799
Q ss_pred eecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc-CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEc
Q 002164 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (958)
Q Consensus 463 ~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (958)
|+|||+.|+.+...++ ..++|.+. ++..-...+... ....+.. +.|+|||..++...
T Consensus 275 ~s~~~~~l~~~g~~dg-~i~i~d~~--~~~~~~~~l~~~~~~~~v~~------~~~sp~~~~~~s~~------------- 332 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDS-SIRYFEIT--SEAPFLHYLSMFSSKESQRG------MGYMPKRGLEVNKC------------- 332 (402)
T ss_dssp EETTTTEEEEEETTCS-CEEEEEEC--SSTTCEEEEEEECCSSCCSE------EEECCGGGSCGGGT-------------
T ss_pred EcCCCCEEEEEEcCCC-eEEEEEec--CCCcceEeecccccCCcccc------eEEecccccceecc-------------
Confidence 9999999887764443 25555554 431112222221 1222233 88999998765321
Q ss_pred cCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 542 GNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 542 ~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
..+.+|++.+++.+.+
T Consensus 333 ----------~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 333 ----------EIARFYKLHERKCEPI 348 (402)
T ss_dssp ----------EEEEEEEEETTEEEEE
T ss_pred ----------eeEEEEEcCCCcEEEE
Confidence 1477777777766554
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=142.18 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=131.8
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+...+...+|.+++...+-+.+ +.|.||++||.+... ..| ...+..|++ ||.|++
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~~-------~~~~vvllHG~~~~~-----------~~~----~~~~~~L~~-~~~vi~-- 60 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGDI-------SRPPVLCLPGLTRNA-----------RDF----EDLATRLAG-DWRVLC-- 60 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBCT-------TSCCEEEECCTTCCG-----------GGG----HHHHHHHBB-TBCEEE--
T ss_pred ccCeeecCCCceEEEEEcCCCC-------CCCcEEEECCCCcch-----------hhH----HHHHHHhhc-CCEEEe--
Confidence 4556777899999888775432 136688999964211 111 123444544 999999
Q ss_pred CCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 720 TTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 720 ~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
.|.+|+|.+.... .......+|+.+.++.+ ..+++.|+||||||.+|+.+|.++|++++++|+.++...
T Consensus 61 -~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (285)
T 3bwx_A 61 -PEMRGRGDSDYAKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPE 133 (285)
T ss_dssp -ECCTTBTTSCCCSSGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSS
T ss_pred -ecCCCCCCCCCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcc
Confidence 6667888875421 12456677777777665 225899999999999999999999999999998653111
Q ss_pred CC-------------CC---CC-------------CcccccchhhhcH-H-HHHh---------cCc-----cc------
Q 002164 796 RT-------------LT---PF-------------GFQNEDRTLWEAT-S-TYVE---------MSP-----FM------ 824 (958)
Q Consensus 796 ~~-------------~~---~~-------------~~~~~~~~~~~~~-~-~~~~---------~sp-----~~------ 824 (958)
.. .. .+ .+.......|... . .+.. .++ +.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (285)
T 3bwx_A 134 VSPEGLERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGAT 213 (285)
T ss_dssp CCHHHHHHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCC
T ss_pred cCcchhHHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhcc
Confidence 00 00 00 0000000001000 0 0000 000 00
Q ss_pred -------ccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 825 -------SANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 825 -------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+.++ ++|+|+++|++|..++ +..+.++.+ . ...++++++++||... .+.... +..|.+||.+
T Consensus 214 ~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~----~-~~~~~~~i~~~gH~~~-~e~p~~-~~~i~~fl~~ 284 (285)
T 3bwx_A 214 PQVDMWPLFDALATRPLLVLRGETSDILS--AQTAAKMAS----R-PGVELVTLPRIGHAPT-LDEPES-IAAIGRLLER 284 (285)
T ss_dssp CSSCCHHHHHHHTTSCEEEEEETTCSSSC--HHHHHHHHT----S-TTEEEEEETTCCSCCC-SCSHHH-HHHHHHHHTT
T ss_pred ccchhhHHHHHccCCCeEEEEeCCCCccC--HHHHHHHHh----C-CCcEEEEeCCCCccch-hhCchH-HHHHHHHHHh
Confidence 01123 7999999999999988 776655544 3 4589999999999864 333443 4678888753
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=143.93 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=112.2
Q ss_pred HHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 706 ~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
..|+ ++|.|++ .|.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|+
T Consensus 61 ~~l~-~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~GG~ia~~~a~~~p~ 130 (289)
T 1u2e_A 61 PLVE-AGYRVIL---LDCPGWGKSDSVVNSGSRSDLNARILKSVVDQL------DIAKIHLLGNSMGGHSSVAFTLKWPE 130 (289)
T ss_dssp HHHH-TTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHh-cCCeEEE---EcCCCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHCHH
Confidence 3444 4599999 6667888775432 12334455555544432 33689999999999999999999999
Q ss_pred ceeEEEEeccCCCCC--CCCCC---------------------------ccccc--ch----hh----hcHHHHH-----
Q 002164 783 LFCCGIARSGAYNRT--LTPFG---------------------------FQNED--RT----LW----EATSTYV----- 818 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~--~~~~~---------------------------~~~~~--~~----~~----~~~~~~~----- 818 (958)
+++++|++++..... ..... +.... .. .+ ..+..+.
T Consensus 131 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (289)
T 1u2e_A 131 RVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKS 210 (289)
T ss_dssp GEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHH
Confidence 999999988754211 00000 00000 00 00 0011110
Q ss_pred -------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002164 819 -------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (958)
Q Consensus 819 -------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~ 891 (958)
..+....+.++++|+|+++|++|..+| +..+.++.+.+.. .+++++|++||... .++...+.+.+.
T Consensus 211 ~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~ 283 (289)
T 1u2e_A 211 LEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVP--MDAGLRLLSGIAG----SELHIFRDCGHWAQ-WEHADAFNQLVL 283 (289)
T ss_dssp HHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHSTT----CEEEEESSCCSCHH-HHTHHHHHHHHH
T ss_pred HHhccccccchhhHHhhcCCCeEEEeeCCCCccC--HHHHHHHHhhCCC----cEEEEeCCCCCchh-hcCHHHHHHHHH
Confidence 011223567789999999999999998 8888888777653 58899999999863 455667777788
Q ss_pred HHHH
Q 002164 892 RWLQ 895 (958)
Q Consensus 892 ~fl~ 895 (958)
+||.
T Consensus 284 ~fl~ 287 (289)
T 1u2e_A 284 NFLA 287 (289)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8874
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=149.69 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=138.8
Q ss_pred CcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-----
Q 002164 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA----- 710 (958)
Q Consensus 637 ~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~----- 710 (958)
.+.+.+++.+. -|.....++|+|++|++. ..++|+|+++||... |.. .......++.
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y~~~-~~~yPVlylldG~~~---------------f~~-~~~~~~~l~~~~~~~ 72 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLDGEDQ---------------FDH-MASLLQFLSQGTMPQ 72 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTGGGS-CCCEEEEEESSHHHH---------------HHH-HHHHHHHHTCSSSCS
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCCCCC-CCCccEEEEecChhh---------------hHH-HHHHHHHHHhhhhcC
Confidence 34567777776 478899999999998753 235999999999420 100 0112233332
Q ss_pred -CCcEEEEcCCCC-------------CCCCCCc--c----cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH
Q 002164 711 -RGFAILGGPTTP-------------IIGEGDE--E----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA 770 (958)
Q Consensus 711 -~G~~vl~~~~~~-------------~~G~G~~--~----~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG 770 (958)
.+++||.++..+ ..|.... . ....+..... .+.+.++.++..+++.+ +|+|+||||
T Consensus 73 ~~~~IvV~i~~~~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~---~el~p~i~~~~~~~~~r-~i~G~S~GG 148 (331)
T 3gff_A 73 IPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIE---KELAPSIESQLRTNGIN-VLVGHSFGG 148 (331)
T ss_dssp SCCCEEEEECCSSHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHH---HTHHHHHHHHSCEEEEE-EEEEETHHH
T ss_pred CCCEEEEEECCCCcccccCCCccccccccccccccCCCCCcHHHHHHHHH---HHHHHHHHHHCCCCCCe-EEEEECHHH
Confidence 357888744310 0011000 0 0112222222 24566666776677655 899999999
Q ss_pred HHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCC-------C
Q 002164 771 FMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN-------N 843 (958)
Q Consensus 771 ~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~-------~ 843 (958)
++|++++.++|++|+++++.+|.+.+. ...+......+ +......+.|+++.||+.|. .
T Consensus 149 ~~al~~~~~~p~~F~~~~~~S~~~w~~---------~~~~~~~~~~~-----~~~~~~~~~~l~l~~G~~d~~~~~~~~~ 214 (331)
T 3gff_A 149 LVAMEALRTDRPLFSAYLALDTSLWFD---------SPHYLTLLEER-----VVKGDFKQKQLFMAIANNPLSPGFGVSS 214 (331)
T ss_dssp HHHHHHHHTTCSSCSEEEEESCCTTTT---------TTHHHHHHHHH-----HHHCCCSSEEEEEEECCCSEETTTEECC
T ss_pred HHHHHHHHhCchhhheeeEeCchhcCC---------hHHHHHHHHHH-----hhcccCCCCeEEEEeCCCCCCCccchHH
Confidence 999999999999999999999864211 00111111111 11111245799999999998 4
Q ss_pred CCCChHHHHHHHHHHHhC---CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 844 SGTLTMQSDRFFNALKGH---GALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~---g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
++ ...+++++++|+.. |+++++.+||+++|.... ...+...++||-....
T Consensus 215 ~~--~~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 215 YH--KDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp HH--HHHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGGC
T ss_pred HH--HHHHHHHHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhcC
Confidence 55 67789999999986 778999999999998632 2334555666655443
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=148.68 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=123.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC------------------CCCCccc
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII------------------GEGDEEA 731 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~------------------G~G~~~~ 731 (958)
.|.||++||..... ..|......+...|.++||.|+.++..... |+|.+..
T Consensus 5 ~~~vl~lHG~g~~~-----------~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 73 (243)
T 1ycd_A 5 IPKLLFLHGFLQNG-----------KVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRA 73 (243)
T ss_dssp CCEEEEECCTTCCH-----------HHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEE
T ss_pred CceEEEeCCCCccH-----------HHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcc
Confidence 68999999953211 111101112344566679999996664110 2222210
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CceeEEEEeccCCCCCCCCCCcc
Q 002164 732 N-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAYNRTLTPFGFQ 804 (958)
Q Consensus 732 ~-~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~~~~~~~~~~~ 804 (958)
- .........|+.+++++|.+....+..+++|+|||+||.+|+.++.+.+ ..+++++..++........ .+.
T Consensus 74 w~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-~~~ 152 (243)
T 1ycd_A 74 WFYHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-EHP 152 (243)
T ss_dssp SSCCCSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-TST
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-ccc
Confidence 0 0000012456666777766643233468999999999999999998642 2577888877754311000 000
Q ss_pred cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCcc
Q 002164 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARE 881 (958)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~p~~~H~~~~~~ 881 (958)
....+.. .+ ......+.++++|+|++||++|..|| +.+++++++.++..+ .....++++++||.+...
T Consensus 153 --~~~~~~~--~~--~~~~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~- 223 (243)
T 1ycd_A 153 --GELRITE--KF--RDSFAVKPDMKTKMIFIYGASDQAVP--SVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK- 223 (243)
T ss_dssp --TCEEECG--GG--TTTTCCCTTCCCEEEEEEETTCSSSC--HHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC-
T ss_pred --cccccch--hH--HHhccCcccCCCCEEEEEeCCCCccC--HHHHHHHHHHhhhhccccccccEEEecCCCCcCCch-
Confidence 0000000 01 11223456688999999999999999 999999999998641 112344566779987533
Q ss_pred cHHHHHHHHHHHHHHhhcc
Q 002164 882 SIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 882 ~~~~~~~~i~~fl~~~l~~ 900 (958)
..+.+.+.+||++++..
T Consensus 224 --~~~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 224 --KDIIRPIVEQITSSLQE 240 (243)
T ss_dssp --HHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHhhhh
Confidence 35788999999998753
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=147.70 Aligned_cols=221 Identities=12% Similarity=0.084 Sum_probs=131.1
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.+.+.. + ..+....+-|.+ . ..|+||++||.... ...+. +....+..| ++||.|++++
T Consensus 16 ~~~~~~~-~-~~~~y~~~g~~~---~---~~~~vvllHG~~~~-----------~~~~~-~~~~l~~~L-~~g~~Vi~~D 74 (335)
T 2q0x_A 16 HLFTYYK-D-PYCKIPVFMMNM---D---ARRCVLWVGGQTES-----------LLSFD-YFTNLAEEL-QGDWAFVQVE 74 (335)
T ss_dssp EEEEEEE-E-TTEEEEEEEECT---T---SSSEEEEECCTTCC-----------TTCST-THHHHHHHH-TTTCEEEEEC
T ss_pred EEEecCC-C-CceeEEEeccCC---C---CCcEEEEECCCCcc-----------ccchh-HHHHHHHHH-HCCcEEEEEe
Confidence 3444444 3 445555554321 1 25788899995311 01111 011234444 7899999965
Q ss_pred CC-CCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH--hCCCceeEEEEeccCCCC
Q 002164 720 TT-PIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA--HAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 720 ~~-~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~--~~p~~~~a~v~~~~~~~~ 796 (958)
.+ +.+|+|.+.. .....|+.++++++.+. .+.+++.|+||||||.+++.++. .+|++++++|+.++..+.
T Consensus 75 l~~D~~G~G~S~~-----~~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~ 147 (335)
T 2q0x_A 75 VPSGKIGSGPQDH-----AHDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDP 147 (335)
T ss_dssp CGGGBTTSCSCCH-----HHHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCT
T ss_pred ccCCCCCCCCccc-----cCcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccc
Confidence 43 5678888732 34567888888888875 34579999999999999999999 478999999999886542
Q ss_pred CCCCCCc----------------------------ccc-c-chhhhc------HHH-HH------hcCcccccCCCCCCE
Q 002164 797 TLTPFGF----------------------------QNE-D-RTLWEA------TST-YV------EMSPFMSANKLKKPI 833 (958)
Q Consensus 797 ~~~~~~~----------------------------~~~-~-~~~~~~------~~~-~~------~~sp~~~~~~~~~P~ 833 (958)
....+.. ... . ...+.. ... +. ..+....+.++++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pt 227 (335)
T 2q0x_A 148 ENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPL 227 (335)
T ss_dssp TSTTTSHHHHHHHHHHHHHHHHHTCTTCGGGGTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCE
T ss_pred hhcccCHHHHHHHHHHHHHHhhccCccccccchhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCe
Confidence 2000000 000 0 000000 000 00 001123466789999
Q ss_pred EEEeeCCCCCCCCChHH-HHHHHHHHHhCCCcEE--------E-----EEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 834 LLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCR--------L-----VILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 834 Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~--------~-----~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||+||++|..+| +.. ...+.+.+...-...+ + +++|++|| +..+.+.+||.+...
T Consensus 228 Lvi~G~~D~~vp--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~~ 296 (335)
T 2q0x_A 228 LLMLAHNVQYKP--SDEEVGTVLEGVRDHTGCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADEDE 296 (335)
T ss_dssp EEEEECCTTCCC--CHHHHHHHHHHHHHHSSSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCC--hhhhHHHHHHHHHHhcCccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhhh
Confidence 999999999998 664 2233333333211122 5 78999999 237888999987653
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=145.33 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=133.7
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...+|.+++...+-+ .|+||++||.+.... .|. .....|++ +|.|++ .+.+
T Consensus 14 ~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~~~-----------~~~----~~~~~L~~-~~~vi~---~D~~ 64 (302)
T 1mj5_A 14 IEIKGRRMAYIDEGT----------GDPILFQHGNPTSSY-----------LWR----NIMPHCAG-LGRLIA---CDLI 64 (302)
T ss_dssp EEETTEEEEEEEESC----------SSEEEEECCTTCCGG-----------GGT----TTGGGGTT-SSEEEE---ECCT
T ss_pred EEECCEEEEEEEcCC----------CCEEEEECCCCCchh-----------hhH----HHHHHhcc-CCeEEE---EcCC
Confidence 344888887665421 478999999653221 111 11223444 489999 5566
Q ss_pred CCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 725 GEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 725 G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
|+|.+.... .......+|+.++++.+ +. +++.++|||+||.+++.++.++|++++++|++++.....
T Consensus 65 G~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 138 (302)
T 1mj5_A 65 GMGDSDKLDPSGPERYAYAEHRDYLDALWEAL------DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPI 138 (302)
T ss_dssp TSTTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCB
T ss_pred CCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCch
Confidence 777775432 23455666666666553 33 689999999999999999999999999999998865311
Q ss_pred CC-CCC--c-------ccc--------cchh----h------------------------hcHHHH----Hhc-------
Q 002164 798 LT-PFG--F-------QNE--------DRTL----W------------------------EATSTY----VEM------- 820 (958)
Q Consensus 798 ~~-~~~--~-------~~~--------~~~~----~------------------------~~~~~~----~~~------- 820 (958)
.. .+. . ... .... + .....+ ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (302)
T 1mj5_A 139 EWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPA 218 (302)
T ss_dssp CGGGSCGGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSH
T ss_pred hhhhhhHHHHHHHHHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccch
Confidence 00 000 0 000 0000 0 000000 000
Q ss_pred -------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 821 -------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 821 -------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
+....+.++++|+|+++|++|..+| +..++++.+.+ .. +++++ ++||.+. .++...+.+.+.+|
T Consensus 219 ~~~~~~~~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~e~p~~~~~~i~~f 289 (302)
T 1mj5_A 219 DVVAIARDYAGWLSESPIPKLFINAEPGALTT--GRMRDFCRTWP----NQ-TEITV-AGAHFIQ-EDSPDEIGAAIAAF 289 (302)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEEECSSSS--HHHHHHHTTCS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhccCCCeEEEEeCCCCCCC--hHHHHHHHHhc----CC-ceEEe-cCcCccc-ccCHHHHHHHHHHH
Confidence 1123456789999999999999998 77766665443 23 88888 9999864 56678889999999
Q ss_pred HHHhhc
Q 002164 894 LQKYCV 899 (958)
Q Consensus 894 l~~~l~ 899 (958)
+.+...
T Consensus 290 l~~~~~ 295 (302)
T 1mj5_A 290 VRRLRP 295 (302)
T ss_dssp HHHHSC
T ss_pred HHhhcc
Confidence 988654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=145.71 Aligned_cols=304 Identities=10% Similarity=0.065 Sum_probs=172.8
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec-CCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~~ 266 (958)
..+...+|+| +++.||... ....|.+||+++++...+....+ ....+..++|+| |++.|+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs---------~dg~i~lWd~~~~~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s---- 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGS---------KGGDIMLWNFGIKDKPTFIKGIG--AGGSITGLKFNPLNTNQFYASS---- 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEE---------TTSCEEEECSSCCSCCEEECCCS--SSCCCCEEEECSSCTTEEEEEC----
T ss_pred CCEEEEEEeCCCCCEEEEEe---------CCCEEEEEECCCCCceeEEEccC--CCCCEEEEEEeCCCCCEEEEEe----
Confidence 4688899999 455666643 35678888988776443322111 111278999998 688887651
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----ccccccccCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSP 341 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~Sp 341 (958)
....|.++|+ ++..+.+... ..+..++|+|
T Consensus 185 ---------------------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 185 ---------------------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp ---------------------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred ---------------------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 1234666777 5544444332 3456789999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEecc
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 421 (958)
||+.|+.... ++.|.+||++++....+..+ ...+..+.|+|+++.+++..
T Consensus 220 ~~~~l~~g~~-------------dg~i~~wd~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~~~s~---- 269 (435)
T 4e54_B 220 SSRMVVTGDN-------------VGNVILLNMDGKELWNLRMH-------------KKKVTHVALNPCCDWFLATA---- 269 (435)
T ss_dssp TTTEEEEECS-------------SSBEEEEESSSCBCCCSBCC-------------SSCEEEEEECTTCSSEEEEE----
T ss_pred CCCEEEEEeC-------------CCcEeeeccCcceeEEEecc-------------cceEEeeeecCCCceEEEEe----
Confidence 9999987763 34899999987654433322 14567899999999876641
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
+..+.|.+||+ ..+.....+ ..+...+..++|+|||++|+..+.++. |.++++..+. ....+
T Consensus 270 --------s~d~~v~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~----i~iwd~~~~~-~~~~~ 334 (435)
T 4e54_B 270 --------SVDQTVKIWDL--RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE----IRVYSASQWD-CPLGL 334 (435)
T ss_dssp --------ETTSBCCEEET--TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC----EEEEESSSSS-SEEEE
T ss_pred --------cCcceeeEEec--ccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE----EEEEECCCCc-cceEE
Confidence 33456778886 222222222 234556778999999999987765443 4444555432 11222
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe-cCCcccccc
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW-ESDKEKYYE 577 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~-~~~~~~~~~ 577 (958)
. ................|+|++..++...... +..+++.. .+...|++||..+|+..... .....
T Consensus 335 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~------~~~~~i~iwd~~~g~~~~~l~~~~~~---- 400 (435)
T 4e54_B 335 I-PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSCTP------YELRTIDVFDGNSGKMMCQLYDPESS---- 400 (435)
T ss_dssp C-CCCCCCCSSSCCCBCEECSSSSCEEEECCCC---TTSCCSST------TCCCCEEEECSSSCCEEEEECCSSCC----
T ss_pred e-cccccccccceeEEEEEcCCCCEEEEEEcCC---CCeEEEEe------cCCCEEEEEECCCCcEEEEEeCCCCC----
Confidence 1 1111100000111246889998877665321 11111111 11235899999888765443 22211
Q ss_pred eeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
.+.. -.+|+|||+.|+. .. ...|++|++.+|+.+
T Consensus 401 ~v~s------~~~fspdg~~las-g~----d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 401 GISS------LNEFNPMGDTLAS-AM----GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCC------EEEECTTSSCEEE-EC----SSEEEECCCC-----
T ss_pred cEEE------EEEECCCCCEEEE-Ec----CCcEEEEECCcCeee
Confidence 0111 1258999986653 22 236899998887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-11 Score=140.32 Aligned_cols=176 Identities=9% Similarity=0.118 Sum_probs=103.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|||+.|+.. . ++.|.+||+. ++....+... .+..+......+..+.|+|||
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~-------------d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-D-------------DLRINLWHLEITDRSFNIVDI-----KPANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-C-------------SSEEEEEETTEEEEEEEEEEC-----CCSSGGGCCCCEEEEEECSSC
T ss_pred cceEEEEEcCCCCEEEEe-C-------------CCeEEEEECCCCCceeeeeec-----ccccccccCcceEEEEECCCC
Confidence 678899999999999875 2 2489999998 3333222110 011112223456789999999
Q ss_pred -CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-----ceEEEeecc------------ccCceeeecCCceEEE
Q 002164 411 -PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-----PEILHKLDL------------RYGGISWCDDSLALVY 472 (958)
Q Consensus 411 -~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-----~~~l~~~~~------------~~~~~~~spDg~~l~~ 472 (958)
+.++.. +..+.|.+||+ ..++ ...+..... .+..+.|+|||+.|+.
T Consensus 239 ~~~l~s~-------------~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 239 CNTFVYS-------------SSKGTIRLCDM---RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp TTEEEEE-------------ETTSCEEEEET---TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred CcEEEEE-------------eCCCeEEEEEC---cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 555542 34567899996 3333 344443332 6778999999999987
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEeccCCcccc------CCC---CCCceEeccCCceEEEEeeeccCCCcEEEEccC
Q 002164 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY------SDP---GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (958)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (958)
... + .|.++++... ......+........ ... ....++|+|||++|+....
T Consensus 303 ~~~-~----~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-------------- 362 (447)
T 3dw8_B 303 RDY-L----SVKVWDLNME-NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-------------- 362 (447)
T ss_dssp EES-S----EEEEEETTCC-SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS--------------
T ss_pred eeC-C----eEEEEeCCCC-ccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc--------------
Confidence 654 2 2444454431 112222222111000 000 0011689999999876652
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEec
Q 002164 544 GATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 544 ~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
...|++||+.+++...+..
T Consensus 363 -------dg~v~iwd~~~~~~~~~~~ 381 (447)
T 3dw8_B 363 -------NNFFRMFDRNTKRDITLEA 381 (447)
T ss_dssp -------TTEEEEEETTTCCEEEEEC
T ss_pred -------CCEEEEEEcCCCcceeeee
Confidence 1269999999988766543
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=144.02 Aligned_cols=190 Identities=10% Similarity=0.016 Sum_probs=116.3
Q ss_pred EEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
.||++||.+.... .|. .....| +.+|.|++ .|.+|+|.+.....+ ++.+.++.+.
T Consensus 15 ~vvllHG~~~~~~-----------~w~----~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~------~~~~~~~~l~ 69 (258)
T 1m33_A 15 HLVLLHGWGLNAE-----------VWR----CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL------SLADMAEAVL 69 (258)
T ss_dssp EEEEECCTTCCGG-----------GGG----GTHHHH-HTTSEEEE---ECCTTSTTCCSCCCC------CHHHHHHHHH
T ss_pred eEEEECCCCCChH-----------HHH----HHHHHh-hcCcEEEE---eeCCCCCCCCCCCCc------CHHHHHHHHH
Confidence 7889999642211 111 123345 46899999 666788887544211 1112233343
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-CCC-cccc--------c--------chhh--
Q 002164 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PFG-FQNE--------D--------RTLW-- 811 (958)
Q Consensus 752 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~~-~~~~--------~--------~~~~-- 811 (958)
+. ++ +++.|+||||||.+|+.+|.++|++++++|++++....... .+. .... . ....
T Consensus 70 ~~--l~-~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (258)
T 1m33_A 70 QQ--AP-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLAL 146 (258)
T ss_dssp TT--SC-SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--hC-CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33 34 78999999999999999999999999999998764211100 000 0000 0 0000
Q ss_pred ---------hcHH----------------------HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 812 ---------EATS----------------------TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 812 ---------~~~~----------------------~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
...+ .+...+....+.++++|+|+++|++|..+| +..++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~- 223 (258)
T 1m33_A 147 QTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP- 223 (258)
T ss_dssp TSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTCT-
T ss_pred HhcCCccchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCC--HHHHHHHHHhCc-
Confidence 0000 001112223456789999999999999998 776665554432
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 861 ~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..+++++|++||... .+....+.+.+.+|+.+
T Consensus 224 ---~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 224 ---HSESYIFAKAAHAPF-ISHPAEFCHLLVALKQR 255 (258)
T ss_dssp ---TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred ---cceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 358899999999864 45567788888888854
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=137.91 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=130.7
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC--------C
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------T 721 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~--------~ 721 (958)
..+.+.+|+|.+. ++|.|+||.+||+. + ...+||+++.+++ +
T Consensus 90 ~~~~~~i~lP~~~----~~p~Pvii~i~~~~----------------~----------~~~~G~a~~~~~~~~v~~~~~~ 139 (375)
T 3pic_A 90 ISFTVTITYPSSG----TAPYPAIIGYGGGS----------------L----------PAPAGVAMINFNNDNIAAQVNT 139 (375)
T ss_dssp EEEEEEEECCSSS----CSSEEEEEEETTCS----------------S----------CCCTTCEEEEECHHHHSCCSSG
T ss_pred eEEEEEEECCCCC----CCCccEEEEECCCc----------------c----------ccCCCeEEEEecccccccccCC
Confidence 4588999999752 35799999999841 1 1357899988543 2
Q ss_pred CCCCCCCccc---c----hhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 722 PIIGEGDEEA---N----DRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 722 ~~~G~G~~~~---~----~~~~~~~~~D~~~av~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
+++|+|. +. + .........|+..++|||..++ .||++||+|+|||+||.+|+++++.+ ++|+++|..++
T Consensus 140 gs~g~g~-f~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~ 217 (375)
T 3pic_A 140 GSRGQGK-FYDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQES 217 (375)
T ss_dssp GGTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESC
T ss_pred CCcccee-cccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccC
Confidence 2344442 11 0 0112344679999999999998 99999999999999999999999999 68999999876
Q ss_pred CCCCCCC-C-------CCcccc------cchhhhcHHHHHhcC------ccc---ccCC-CCCCEEEEeeCCCCCCCCCh
Q 002164 793 AYNRTLT-P-------FGFQNE------DRTLWEATSTYVEMS------PFM---SANK-LKKPILLVHGEEDNNSGTLT 848 (958)
Q Consensus 793 ~~~~~~~-~-------~~~~~~------~~~~~~~~~~~~~~s------p~~---~~~~-~~~P~Lii~G~~D~~v~~~~ 848 (958)
..+.... . ++-... ....|-.+. |..+. |++ .+.- ...|+||+.| +|..++ +
T Consensus 218 g~~G~~~~R~~~~~~~~Ge~v~~~~~~~~e~~Wf~~~-~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~--~ 293 (375)
T 3pic_A 218 GAGGSACWRISDYLKSQGANIQTASEIIGEDPWFSTT-FNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLG--P 293 (375)
T ss_dssp CTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCSCSCGG-GGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGC--H
T ss_pred CCCchhhhhhhhhhcccCccccccccccCcccccccc-hhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccC--c
Confidence 4332110 0 000000 001221111 11111 111 1111 2479999999 888877 6
Q ss_pred HHHHHHHHHH----HhCCC--cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 849 MQSDRFFNAL----KGHGA--LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 849 ~~~~~~~~~l----~~~g~--~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
......+.++ +..|. .+.+.+..+.+|.....+ ..+.+.+||++||++..
T Consensus 294 ~g~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~fp~~----~~~~~~~F~~k~L~~~~ 349 (375)
T 3pic_A 294 QSCFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAFPSN----QQSQLTAFVQKFLLGQS 349 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCCCGG----GHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEeeCCCccccCCHH----HHHHHHHHHHHHhCCCC
Confidence 6554333333 33443 566654344456322222 24678999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-12 Score=153.61 Aligned_cols=217 Identities=13% Similarity=0.080 Sum_probs=137.7
Q ss_pred eceeEEEccCCCCC-C-ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKL-G-QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~-~-~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
+.|.+|++..+... + ..+.++++. ..+....|||||++|+.... ...|.+||+.+++..+.......
T Consensus 405 ~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~sgs~---------Dg~v~vwd~~~~~~~~~~~~h~~ 473 (694)
T 3dm0_A 405 KSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDGQFALSGSW---------DGELRLWDLAAGVSTRRFVGHTK 473 (694)
T ss_dssp SEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTEEEEEEECCSS
T ss_pred CcEEEEEccCCCcccccccceecCCC--CcEEEEEECCCCCEEEEEeC---------CCcEEEEECCCCcceeEEeCCCC
Confidence 57899998653211 1 134555533 56889999999999988652 56899999998876544333332
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
. +..++|+|||+.|+..+ ....|.+++
T Consensus 474 ~----v~~~~~s~~~~~l~s~s-------------------------------------------------~D~~i~iwd 500 (694)
T 3dm0_A 474 D----VLSVAFSLDNRQIVSAS-------------------------------------------------RDRTIKLWN 500 (694)
T ss_dssp C----EEEEEECTTSSCEEEEE-------------------------------------------------TTSCEEEEC
T ss_pred C----EEEEEEeCCCCEEEEEe-------------------------------------------------CCCEEEEEE
Confidence 2 77899999999998762 123355556
Q ss_pred c-CCeeeecCC----C-ccccccccCCCCc--EEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCc
Q 002164 321 L-DGTVKEIGP----P-AVYTSLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIP 391 (958)
Q Consensus 321 ~-~g~~~~l~~----~-~~~~~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p 391 (958)
. +.....+.. . ..+..++|+|++. .|+..+. ++.|.+||+.+.... .+..+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-------------d~~v~vwd~~~~~~~~~~~~h------- 560 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-------------DKTVKVWNLSNCKLRSTLAGH------- 560 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET-------------TSCEEEEETTTCCEEEEECCC-------
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC-------------CCeEEEEECCCCcEEEEEcCC-------
Confidence 5 333333321 1 4577889999984 4554442 348999999865443 33222
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEE
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~ 471 (958)
...+..+.|+|||+.|+.. +..+.|.+||+ ..++..........+..++|||++..|+
T Consensus 561 ------~~~v~~v~~spdg~~l~sg-------------~~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 561 ------TGYVSTVAVSPDGSLCASG-------------GKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp ------SSCEEEEEECTTSSEEEEE-------------ETTSBCEEEET---TTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred ------CCCEEEEEEeCCCCEEEEE-------------eCCCeEEEEEC---CCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence 1345789999999987763 44667889996 3332211122344567789999998777
Q ss_pred EEEeccccceEEEEEcCCC
Q 002164 472 YESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~ 490 (958)
.... + .|.++++.+
T Consensus 619 ~~~~-~----~i~iwd~~~ 632 (694)
T 3dm0_A 619 AATE-H----GIKIWDLES 632 (694)
T ss_dssp EEET-T----EEEEEETTT
T ss_pred EEcC-C----CEEEEECCC
Confidence 6532 2 255555555
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=141.37 Aligned_cols=198 Identities=12% Similarity=0.081 Sum_probs=121.1
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (958)
+.|+||++||..... ..| ...+..|+ .+|.|++ .+.+|+|.+.... .......+|+.++
T Consensus 19 ~~~~vv~~HG~~~~~-----------~~~----~~~~~~l~-~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~ 79 (267)
T 3fla_A 19 ARARLVCLPHAGGSA-----------SFF----FPLAKALA-PAVEVLA---VQYPGRQDRRHEPPVDSIGGLTNRLLEV 79 (267)
T ss_dssp CSEEEEEECCTTCCG-----------GGG----HHHHHHHT-TTEEEEE---ECCTTSGGGTTSCCCCSHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCc-----------hhH----HHHHHHhc-cCcEEEE---ecCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 479999999964211 111 13344444 4599999 5556777664322 2344555555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEeccCCCCCCCCCCccccc---------------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL----FCCGIARSGAYNRTLTPFGFQNED--------------- 807 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~~~~~~~~~~~~~~~~~--------------- 807 (958)
++.+ +.+++.|+|||+||.+++.++.+.|++ ++++++.++...............
T Consensus 80 l~~~------~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
T 3fla_A 80 LRPF------GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSD 153 (267)
T ss_dssp TGGG------TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHH
T ss_pred HHhc------CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcc
Confidence 5443 346899999999999999999999886 888888876532211100000000
Q ss_pred chhhhcH--------------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002164 808 RTLWEAT--------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (958)
Q Consensus 808 ~~~~~~~--------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~ 873 (958)
.....++ ..+..+..... .++++|+|+++|++|..+| +....++.+.+.. +++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~g- 226 (267)
T 3fla_A 154 AAMLADPELLAMVLPAIRSDYRAVETYRHEPG-RRVDCPVTVFTGDHDPRVS--VGEARAWEEHTTG---PADLRVLPG- 226 (267)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHCCCCTT-CCBSSCEEEEEETTCTTCC--HHHHHGGGGGBSS---CEEEEEESS-
T ss_pred hhhccCHHHHHHHHHHHHHHHHhhhccccccc-CcCCCCEEEEecCCCCCCC--HHHHHHHHHhcCC---CceEEEecC-
Confidence 0000000 11111221111 5688999999999999998 7777776655432 589999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 874 SHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||.+. .++...+.+.+.+||.+...
T Consensus 227 gH~~~-~~~~~~~~~~i~~fl~~~~~ 251 (267)
T 3fla_A 227 GHFFL-VDQAAPMIATMTEKLAGPAL 251 (267)
T ss_dssp STTHH-HHTHHHHHHHHHHHTC----
T ss_pred Cceee-ccCHHHHHHHHHHHhccccc
Confidence 99864 45566777778888776543
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=142.31 Aligned_cols=197 Identities=9% Similarity=-0.042 Sum_probs=124.7
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av 747 (958)
|.||++||...... .| ......|+++||.|++ .|.+|+|.+.... .......+|+.+.+
T Consensus 4 ~~vvllHG~~~~~~-----------~w----~~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (257)
T 3c6x_A 4 AHFVLIHTICHGAW-----------IW----HKLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL 65 (257)
T ss_dssp CEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH
T ss_pred CcEEEEcCCccCcC-----------CH----HHHHHHHHhCCCEEEE---eCCCCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 56889999642211 11 1345578889999999 6667888875421 12455566666555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC-CCCCCC-----------Ccccc---------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-RTLTPF-----------GFQNE--------- 806 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-~~~~~~-----------~~~~~--------- 806 (958)
+.+ +. .+++.|+||||||.+++.++.++|++++++|.+++... ...... .+...
T Consensus 66 ~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 3c6x_A 66 EAL---PP--GEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDG 140 (257)
T ss_dssp HTS---CT--TCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETT
T ss_pred Hhc---cc--cCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCC
Confidence 443 11 25899999999999999999999999999998876421 000000 00000
Q ss_pred -------cch------hhh--cHH--HHH--hcCcc----------ccc--CC-CCCCEEEEeeCCCCCCCCChHHHHHH
Q 002164 807 -------DRT------LWE--ATS--TYV--EMSPF----------MSA--NK-LKKPILLVHGEEDNNSGTLTMQSDRF 854 (958)
Q Consensus 807 -------~~~------~~~--~~~--~~~--~~sp~----------~~~--~~-~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (958)
... .+. ... .+. ...+. ... .. .++|+|+++|++|..+| +..++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~~~~ 218 (257)
T 3c6x_A 141 KEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQ 218 (257)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHH
T ss_pred CccccccccHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccC--HHHHHHH
Confidence 000 000 000 000 00110 000 11 26799999999999998 8888888
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 855 FNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 855 ~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+.+.. .+++++|++||... .+....+.+.+.+|++.+
T Consensus 219 ~~~~~~----~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 219 IENYKP----DKVYKVEGGDHKLQ-LTKTKEIAEILQEVADTY 256 (257)
T ss_dssp HHHSCC----SEEEECCSCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHCCC----CeEEEeCCCCCCcc-cCCHHHHHHHHHHHHHhc
Confidence 776643 48899999999873 566788888899998754
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=137.54 Aligned_cols=212 Identities=11% Similarity=0.108 Sum_probs=130.3
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC--------CC
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT--------TP 722 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~--------~~ 722 (958)
.+.+.+|+|.+ ++|.|+||.+||+. . ...+||+++.+++ .+
T Consensus 124 sf~~~i~lP~g-----~~P~Pvii~~~~~~----------------~----------~~~~G~A~i~f~~~~va~d~~~g 172 (433)
T 4g4g_A 124 SFSASIRKPSG-----AGPFPAIIGIGGAS----------------I----------PIPSNVATITFNNDEFGAQMGSG 172 (433)
T ss_dssp EEEEEEECCSS-----SCCEEEEEEESCCC----------------S----------CCCTTSEEEEECHHHHSCCSSGG
T ss_pred EEEEEEECCCC-----CCCccEEEEECCCc----------------c----------ccCCCeEEEEeCCcccccccCCC
Confidence 46999999975 35799999999741 0 1356999988544 22
Q ss_pred CCCCCCcccc-----hhh--HHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 723 IIGEGDEEAN-----DRF--VEQLVACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 723 ~~G~G~~~~~-----~~~--~~~~~~D~~~av~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
++|+|. +.. ..+ ......++..++|||.. ++.||++||+|+|+|+||..|+++++.+ ++|+++|+.+
T Consensus 173 srG~g~-f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~ 250 (433)
T 4g4g_A 173 SRGQGK-FYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQE 250 (433)
T ss_dssp GTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEES
T ss_pred cCCccc-cccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEec
Confidence 344443 110 111 23346799999999999 8899999999999999999999999999 6899999987
Q ss_pred cCCCCCCC-C-------CCcc--c----ccchhhhcHHHHHhcC------cccc---cCC-CCCCEEEEeeCCCCCCCCC
Q 002164 792 GAYNRTLT-P-------FGFQ--N----EDRTLWEATSTYVEMS------PFMS---ANK-LKKPILLVHGEEDNNSGTL 847 (958)
Q Consensus 792 ~~~~~~~~-~-------~~~~--~----~~~~~~~~~~~~~~~s------p~~~---~~~-~~~P~Lii~G~~D~~v~~~ 847 (958)
+..+.... . ++.. . .....|-.+. |..+. |+++ +.- ...|+|++.| +|..++
T Consensus 251 sg~~G~~~~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~~-f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~-- 326 (433)
T 4g4g_A 251 SGAGGAACWRISDQQKAAGANIQTAAQIITENPWFSRN-FDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLG-- 326 (433)
T ss_dssp CCTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCCCSCTT-TGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTC--
T ss_pred CCCCchhhhhhchhhcccCcchhhhhcccCCccccchh-hHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCC--
Confidence 64331110 0 0000 0 0001121110 11110 1111 011 1479999999 888776
Q ss_pred hHHHHHHHHHHH------hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCCC
Q 002164 848 TMQSDRFFNALK------GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNTA 903 (958)
Q Consensus 848 ~~~~~~~~~~l~------~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~~ 903 (958)
+......+.+++ .......+.+.++.+|.....+ ....+.+||++||++...
T Consensus 327 p~g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~fp~~----~r~~~~~F~~k~Lkg~~~ 384 (433)
T 4g4g_A 327 PVSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQFPSS----QNQDLNSYINYFLLGQGS 384 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCCCGG----GHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccCCHH----HHHHHHHHHHHHhCCCCC
Confidence 665443333332 2334677766555566532222 246679999999987643
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-13 Score=132.80 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHH
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATS 815 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (958)
.....+|+.++++. .+ +++.++|||+||.+++.++.++|++++++|+++|...... .
T Consensus 58 ~~~~~~~~~~~~~~------~~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~---~------------- 114 (191)
T 3bdv_A 58 LDRWVLAIRRELSV------CT-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF---E------------- 114 (191)
T ss_dssp HHHHHHHHHHHHHT------CS-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG---T-------------
T ss_pred HHHHHHHHHHHHHh------cC-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc---c-------------
Confidence 34555565555543 23 6899999999999999999999999999999998643210 0
Q ss_pred HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHH
Q 002164 816 TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRW 893 (958)
Q Consensus 816 ~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~--~~~~~~~~i~~f 893 (958)
..+...+.++++|+|+++|++|..+| ++.++++.+.+ .++++++++++|...... ...+..+.+.+|
T Consensus 115 ----~~~~~~~~~~~~P~lii~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~f 183 (191)
T 3bdv_A 115 ----IDDRIQASPLSVPTLTFASHNDPLMS--FTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEF 183 (191)
T ss_dssp ----CTTTSCSSCCSSCEEEEECSSBTTBC--HHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHH
T ss_pred ----CccccccccCCCCEEEEecCCCCcCC--HHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHH
Confidence 00113456788999999999999998 88888888876 258999999999974321 334455778888
Q ss_pred HHHh
Q 002164 894 LQKY 897 (958)
Q Consensus 894 l~~~ 897 (958)
|.+.
T Consensus 184 l~~~ 187 (191)
T 3bdv_A 184 SEIL 187 (191)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-13 Score=153.57 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
..+.++++|+|+++|++|..+| ++.++++.+.+. ..++++++ ++||... .+....+.+.|.+||.+++
T Consensus 375 ~~l~~i~~PvLvi~G~~D~~~p--~~~~~~l~~~~p----~~~~~~i~~~~GH~~~-~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 375 EALAMITQPALIICARSDGLYS--FDEHVEMGRSIP----NSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHST----TEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHTC--
T ss_pred HHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHCC----CcEEEEeCCCCCcchH-HhCHHHHHHHHHHHHHHhc
Confidence 4467889999999999999998 888888887765 36999999 8999864 4556778888889987654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=136.87 Aligned_cols=251 Identities=8% Similarity=-0.031 Sum_probs=156.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc-------eeeccCCCCccccccccceEEecC----C--
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-------ARPLFQSPDIYLNAIFDNFVWVNN----S-- 255 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~lt~~~~~~~~~~~~~~~wspD----G-- 255 (958)
..+...+|+| +.|+... ....|++|++++++ ...+...... +..++|+|+ |
T Consensus 17 ~~i~~~~~~~--~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCS---------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSG-----LHHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEE---------TTSEEEEEESBCCTTCCGGGGEEEEECCTTC-----EEEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEc---------CCCEEEEEECCCcccccCCCcceEEecCCCc-----EEEEEEecccccCCcc
Confidence 4788999998 6676654 25689999999877 4444332222 778999999 9
Q ss_pred -eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe------eee
Q 002164 256 -TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT------VKE 327 (958)
Q Consensus 256 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~------~~~ 327 (958)
+.|+... ....|.++++ +++ ...
T Consensus 81 ~~~l~s~~-------------------------------------------------~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTS-------------------------------------------------FSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEE-------------------------------------------------TTSCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEc-------------------------------------------------CCCCEEEEEccCCccccccccee
Confidence 8888762 1234666666 554 455
Q ss_pred cCCC------ccccccccC----CCCcE-EEEEeecCCccccccCCCCCceeEEEeccC------ceE-E-----EeccC
Q 002164 328 IGPP------AVYTSLDPS----PDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDG------IFV-R-----ELCDL 384 (958)
Q Consensus 328 l~~~------~~~~~~~~S----pDGk~-l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~------~~~-~-----~l~~~ 384 (958)
+... ..+..++|+ |||+. |+..+. ++.+.+||+.. +.. + .+...
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-------------KGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-------------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-------------CCcEEEEeCCccccccccceeeccCcceeeee
Confidence 5433 567889999 99999 777663 34899999876 321 1 11100
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe---e---cccc
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---L---DLRY 458 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~---~~~~ 458 (958)
. .........+..+.|+||| .++.. ...+.|++|++ ..+.....+.. . ...+
T Consensus 179 ~------~~~~~~~~~i~~~~~~~~~-~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 179 V------ESPMTPSQFATSVDISERG-LIATG-------------FNNGTVQISEL--STLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp E------CCSSSSCCCCCEEEECTTS-EEEEE-------------CTTSEEEEEET--TTTEEEEEEECCC---CCCCCE
T ss_pred e------ccccCCCCCceEEEECCCc-eEEEE-------------eCCCcEEEEEC--CCCceeEEEeccccccccCCcc
Confidence 0 0000112456789999999 55542 44567999996 22322333343 3 6677
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc-------------CCccccCCCCCCceEeccCCceEE
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR-------------SSEDVYSDPGSPMMRRTSTGTYVI 525 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~spdG~~l~ 525 (958)
..+.|+|+|+.|+.....+. ...|.++++..+ +....... ....+.. +.|+|||++|+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~-~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~ 307 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNS-FGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMS------LSFNDSGETLC 307 (397)
T ss_dssp EEEEECSSTTEEEEEEEETT-EEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEE------EEECSSSSEEE
T ss_pred ceEEECCCCCEEEEEecCCC-CceEEEEECCCC--cccceeccCcccccccccccccCCcEEE------EEECCCCCEEE
Confidence 88999999999987765411 134777777664 33333332 2223333 78999999888
Q ss_pred EEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 526 AKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
....+ ..|++||+.+++......
T Consensus 308 ~~~~d---------------------g~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 308 SAGWD---------------------GKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEETT---------------------SEEEEEETTTTEEEEEEE
T ss_pred EEeCC---------------------CeEEEEEcCCCceeEEEe
Confidence 76521 269999998887766555
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=128.93 Aligned_cols=169 Identities=13% Similarity=-0.045 Sum_probs=110.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc---EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a 746 (958)
.|+||++||..... ..| ......|+++|| .|+. .+.+|+|.+.. ....++.+.
T Consensus 3 ~~~vv~~HG~~~~~-----------~~~----~~~~~~l~~~G~~~~~v~~---~d~~g~g~s~~------~~~~~~~~~ 58 (181)
T 1isp_A 3 HNPVVMVHGIGGAS-----------FNF----AGIKSYLVSQGWSRDKLYA---VDFWDKTGTNY------NNGPVLSRF 58 (181)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHTTCCGGGEEE---CCCSCTTCCHH------HHHHHHHHH
T ss_pred CCeEEEECCcCCCH-----------hHH----HHHHHHHHHcCCCCccEEE---EecCCCCCchh------hhHHHHHHH
Confidence 47799999964211 111 245667889998 5888 45556665532 122333333
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCccc
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (958)
++.+.+. .+.+++.++||||||.+++.++.+. |++++++|++++......... +...
T Consensus 59 ~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~---------------~~~~---- 117 (181)
T 1isp_A 59 VQKVLDE--TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA---------------LPGT---- 117 (181)
T ss_dssp HHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC---------------CCCS----
T ss_pred HHHHHHH--cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc---------------CCCC----
Confidence 3333333 2446899999999999999999987 889999999998643211100 0000
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
....++|+|++||++|..+| +..++ -...+++++++++|.+... + ..+.+.+.+||.+.
T Consensus 118 -~~~~~~p~l~i~G~~D~~v~--~~~~~---------~~~~~~~~~~~~gH~~~~~-~-~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 118 -DPNQKILYTSIYSSADMIVM--NYLSR---------LDGARNVQIHGVGHIGLLY-S-SQVNSLIKEGLNGG 176 (181)
T ss_dssp -CTTCCCEEEEEEETTCSSSC--HHHHC---------CBTSEEEEESSCCTGGGGG-C-HHHHHHHHHHHTTT
T ss_pred -CCccCCcEEEEecCCCcccc--ccccc---------CCCCcceeeccCchHhhcc-C-HHHHHHHHHHHhcc
Confidence 01235799999999999998 66321 2235888999999997533 3 36778888888654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-11 Score=135.00 Aligned_cols=282 Identities=11% Similarity=0.110 Sum_probs=177.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......|++ +.++.... ...|++|++++|+...+...... ..+..++|+|||+.|++..
T Consensus 95 ~~~~~~~s~--~~l~~~~~---------d~~v~lw~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~------- 153 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVAL---------ERNVYVWNADSGSVSALAETDES---TYVASVKWSHDGSFLSVGL------- 153 (401)
T ss_dssp TCBCEEECT--TSEEEEEE---------TTEEEEEETTTCCEEEEEECCTT---CCEEEEEECTTSSEEEEEE-------
T ss_pred eEEEEeecC--CCEEEEEC---------CCeEEEeeCCCCcEeEeeecCCC---CCEEEEEECCCCCEEEEEC-------
Confidence 455677875 44555442 56899999999987766554221 1277999999999998772
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
..+.|.++++ +++ .+.+... ..+..+.| +++.|
T Consensus 154 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 189 (401)
T 4aez_A 154 ------------------------------------------GNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVL 189 (401)
T ss_dssp ------------------------------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEE
T ss_pred ------------------------------------------CCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEE
Confidence 1245777887 654 4444444 66777888 56777
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccC-c-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-I-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+..+. ++.+.+||+.. + ....+..+ ...+..+.|+|||+.++..
T Consensus 190 ~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~-------- 235 (401)
T 4aez_A 190 SSGSR-------------SGAIHHHDVRIANHQIGTLQGH-------------SSEVCGLAWRSDGLQLASG-------- 235 (401)
T ss_dssp EEEET-------------TSEEEEEETTSSSCEEEEEECC-------------SSCEEEEEECTTSSEEEEE--------
T ss_pred EEEcC-------------CCCEEEEecccCcceeeEEcCC-------------CCCeeEEEEcCCCCEEEEE--------
Confidence 76663 34899999983 2 23333322 1455789999999987773
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe--ccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW--YKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
+..+.|.+||+ ..+.....+......+..+.|+|++..++.... .+ ..|.++++.++ +........
T Consensus 236 -----~~d~~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~--~~~~~~~~~ 303 (401)
T 4aez_A 236 -----GNDNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATG--ARVNTVDAG 303 (401)
T ss_dssp -----ETTSCEEEEET--TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTC--CEEEEEECS
T ss_pred -----eCCCeEEEccC--CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCC--CEEEEEeCC
Confidence 44567999996 223333344456667888999999988887754 22 35777777664 333333222
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEee
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~ 582 (958)
..+.. +.|+|+|+.++..... ....|++||+.+++...+..-.+.
T Consensus 304 -~~v~~------~~~s~~~~~l~~~~g~-------------------~dg~i~v~~~~~~~~~~~~~~~~h--------- 348 (401)
T 4aez_A 304 -SQVTS------LIWSPHSKEIMSTHGF-------------------PDNNLSIWSYSSSGLTKQVDIPAH--------- 348 (401)
T ss_dssp -SCEEE------EEECSSSSEEEEEECT-------------------TTCEEEEEEEETTEEEEEEEEECC---------
T ss_pred -CcEEE------EEECCCCCeEEEEeec-------------------CCCcEEEEecCCccceeEEEecCC---------
Confidence 22232 7899999998875410 123699999988766555331111
Q ss_pred cCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
...-...+|++||+.++.... ...+.++++.+++.
T Consensus 349 ~~~v~~~~~s~dg~~l~s~~~----dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTAAS----DENLKFWRVYDGDH 383 (401)
T ss_dssp SSCCCEEEECTTSSEEEEECT----TSEEEEEECCC---
T ss_pred CCCEEEEEECCCCCEEEEEeC----CCcEEEEECCCCcc
Confidence 011123578999987765433 35688999887753
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=137.99 Aligned_cols=245 Identities=14% Similarity=0.156 Sum_probs=145.7
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCC---CCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
+...+++.+. -|.++...+|+|++|... +++++|||.++||..... ..|...+ ...+..++.|.
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~-----------~~w~~~~-~~~~~~~~~~~ 80 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTP-----------DNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCH-----------HHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCCh-----------HHHHHhc-hHhHHHHHcCc
Confidence 4456666654 577899999999987532 234699999999964211 1111111 12334456789
Q ss_pred EEEEcCCCCC----C---------CCCCccc----------chhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEe
Q 002164 714 AILGGPTTPI----I---------GEGDEEA----------NDRFVEQLVACAEAAVEEVVR----RGVAHPSKIAVGGH 766 (958)
Q Consensus 714 ~vl~~~~~~~----~---------G~G~~~~----------~~~~~~~~~~D~~~av~~l~~----~~~~d~~~i~l~G~ 766 (958)
+++.++.... . |.+..+. ...+....++++...|+.--. +...+.++.+|+|+
T Consensus 81 ~~v~p~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~ 160 (299)
T 4fol_A 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGI 160 (299)
T ss_dssp EEEEECSSCCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEB
T ss_pred hhhccCCCcceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEec
Confidence 8887543111 0 1111110 112334455555555543221 11234578999999
Q ss_pred ChHHHHHHHHHHhC--CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccC---CC-CCCEEEEeeCC
Q 002164 767 SYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSAN---KL-KKPILLVHGEE 840 (958)
Q Consensus 767 S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~---~~-~~P~Lii~G~~ 840 (958)
||||+-|+.++.++ |.++.++.+.+|+.+....++...........+...+..+++...+. +. ..++||.+|++
T Consensus 161 SMGG~gAl~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~ 240 (299)
T 4fol_A 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETT
T ss_pred CchHHHHHHHHHhCCCCCceEEEEecccccCcccccccccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCC
Confidence 99999999999985 67899999999987754433322211112222233344445443333 22 35799999999
Q ss_pred CCCCCCChH-HHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 841 DNNSGTLTM-QSDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 841 D~~v~~~~~-~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
|.... .. ..+.|.++++.+|.+ +++...||.+|.+. -....++..++|..++|+
T Consensus 241 D~f~~--~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~---f~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 241 DPFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTHH--HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred Ccchh--hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH---HHHHHHHHHHHHHHHhcC
Confidence 98742 11 236799999998876 78888999899863 234456677888888874
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=143.12 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=130.3
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
..+|..++...+- + .|.||++||.+.... .|. .....|+++ |.|++ .+.+|
T Consensus 16 ~~~g~~l~~~~~g-------~---~~~vv~lHG~~~~~~-----------~~~----~~~~~L~~~-~~vi~---~D~~G 66 (301)
T 3kda_A 16 EVDGVKLHYVKGG-------Q---GPLVMLVHGFGQTWY-----------EWH----QLMPELAKR-FTVIA---PDLPG 66 (301)
T ss_dssp EETTEEEEEEEEE-------S---SSEEEEECCTTCCGG-----------GGT----TTHHHHTTT-SEEEE---ECCTT
T ss_pred eeCCeEEEEEEcC-------C---CCEEEEECCCCcchh-----------HHH----HHHHHHHhc-CeEEE---EcCCC
Confidence 3488888876653 1 478999999753211 121 234567777 99999 56668
Q ss_pred CCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC---
Q 002164 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--- 799 (958)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--- 799 (958)
+|.+... ........+|+.++++.+ +.++ +.++||||||.+++.++.++|++++++|++++.......
T Consensus 67 ~G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 140 (301)
T 3kda_A 67 LGQSEPPKTGYSGEQVAVYLHKLARQF------SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRF 140 (301)
T ss_dssp STTCCCCSSCSSHHHHHHHHHHHHHHH------CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGS
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHc------CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccch
Confidence 8877543 223456677777777665 2346 999999999999999999999999999999975321100
Q ss_pred ----------CCCc--c---cc-c------------chh---------hhcH---HHH-----------------H----
Q 002164 800 ----------PFGF--Q---NE-D------------RTL---------WEAT---STY-----------------V---- 818 (958)
Q Consensus 800 ----------~~~~--~---~~-~------------~~~---------~~~~---~~~-----------------~---- 818 (958)
.|.+ . .. . ... +... ..+ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (301)
T 3kda_A 141 PAFTAQGESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNE 220 (301)
T ss_dssp BSEETTEECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHH
T ss_pred hhhcchhhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhcc
Confidence 0000 0 00 0 000 0000 000 0
Q ss_pred ----hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 819 ----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 819 ----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.......+.++++|+|+++|++| ++ +.....+.+ ....+++++++++||... .++...+.+.|.+|+
T Consensus 221 ~~~~~~~~~~~l~~i~~P~l~i~G~~D--~~--~~~~~~~~~----~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l 291 (301)
T 3kda_A 221 SVRQNAELAKTRLQMPTMTLAGGGAGG--MG--TFQLEQMKA----YAEDVEGHVLPGCGHWLP-EECAAPMNRLVIDFL 291 (301)
T ss_dssp HHHHHHHHTTSCBCSCEEEEEECSTTS--CT--THHHHHHHT----TBSSEEEEEETTCCSCHH-HHTHHHHHHHHHHHH
T ss_pred chhhcccchhhccccCcceEEEecCCC--CC--hhHHHHHHh----hcccCeEEEcCCCCcCch-hhCHHHHHHHHHHHH
Confidence 00011122378999999999999 54 555555433 334589999999999873 556677777777777
Q ss_pred HHh
Q 002164 895 QKY 897 (958)
Q Consensus 895 ~~~ 897 (958)
.+.
T Consensus 292 ~~~ 294 (301)
T 3kda_A 292 SRG 294 (301)
T ss_dssp TTS
T ss_pred hhC
Confidence 663
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=142.74 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=123.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC--CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR--GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av 747 (958)
.|.||++||..... ..| ......|+++ ||.|++ .|.+|+|.+.... ...++|+.+.+
T Consensus 36 ~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~~~g~~vi~---~D~~G~G~s~~~~---~~~~~~~~~~l 94 (302)
T 1pja_A 36 YKPVIVVHGLFDSS-----------YSF----RHLLEYINETHPGTVVTV---LDLFDGRESLRPL---WEQVQGFREAV 94 (302)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHHSTTCCEEE---CCSSCSGGGGSCH---HHHHHHHHHHH
T ss_pred CCeEEEECCCCCCh-----------hHH----HHHHHHHHhcCCCcEEEE---eccCCCccchhhH---HHHHHHHHHHH
Confidence 57889999953211 111 2346678888 999999 5666777765432 23455555666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCCCCCCCCCCc-----cc----------------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGF-----QN---------------- 805 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~-----~~---------------- 805 (958)
..+.+.. .+++.++||||||.+++.++.++|+ +++++|++++..........+ ..
T Consensus 95 ~~~~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
T 1pja_A 95 VPIMAKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQ 171 (302)
T ss_dssp HHHHHHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGG
T ss_pred HHHhhcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHH
Confidence 6665543 3689999999999999999999998 799999998765322110000 00
Q ss_pred --ccchhhhcH---HHHHhcC-----------------cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHH------
Q 002164 806 --EDRTLWEAT---STYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA------ 857 (958)
Q Consensus 806 --~~~~~~~~~---~~~~~~s-----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~------ 857 (958)
.....|.++ ..+.... ....+.+++ |+|+++|++|..+| +..+.++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~--~~~~~~~~~~~~~~~~ 248 (302)
T 1pja_A 172 EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVIT--PWQSSFFGFYDANETV 248 (302)
T ss_dssp GSTGGGGBCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSS--SGGGGGTCEECTTCCE
T ss_pred HhhhhhcccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccc--hhHhhHhhhcCCcccc
Confidence 000001111 1110000 023456788 99999999999998 7777665321
Q ss_pred ------------------HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 858 ------------------LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 858 ------------------l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
+... ..++++++|++||... .+....+.+.+.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 249 LEMEEQLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp ECGGGSHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred cchhhhhhhhhhhhchhhHhhc-CCeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 2222 2489999999999864 455666666666664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=137.34 Aligned_cols=275 Identities=9% Similarity=-0.027 Sum_probs=140.9
Q ss_pred ceeEEEccCCCCCCceeeeccC--CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-CCceeeccCCCCc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGF--PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDI 240 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~--~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-~g~~~~lt~~~~~ 240 (958)
.|+++.+..+. +..+.+... .........+|||||++|+.+.. . .|.+++++ +|+..++...+..
T Consensus 15 ~i~~~~~d~~~--g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~---------~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 15 AIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM---------K-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB---------T-EEEEEEEEETTEEEEEEEEECC
T ss_pred cEEEEEEECCC--CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc---------c-eEEEEEECCCCCEEEeeEeecC
Confidence 47777663322 343333221 11125678899999998876542 2 67788876 6766554322110
Q ss_pred cccccccceEEecCCeEEE-EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLV-CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. ....++|+|||+.|+ ++... +. ...+.++ ....+ +...+|.+
T Consensus 83 g---~~~~~~~spdg~~l~~~~~~~--~~----------~~~~~~~--------------~~~~~-------g~v~v~~~ 126 (365)
T 1jof_A 83 G---HPRANDADTNTRAIFLLAAKQ--PP----------YAVYANP--------------FYKFA-------GYGNVFSV 126 (365)
T ss_dssp S---SGGGGCTTSCCEEEEEEECSS--TT----------CCEEEEE--------------ESSSC-------CEEEEEEE
T ss_pred C---CCccEEECCCCCEEEEEEecC--Cc----------ceeccce--------------eecCC-------ceEEEEcc
Confidence 1 034688999999643 33110 00 0000000 00000 11224434
Q ss_pred EcCCeee-ecC-----CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcc
Q 002164 320 SLDGTVK-EIG-----PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 320 ~~~g~~~-~l~-----~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~ 392 (958)
+.+|+.. .+. .......++|||||++|++.... ...|++|+++ +++.+.+.......
T Consensus 127 ~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~~---- 190 (365)
T 1jof_A 127 SETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAPD---- 190 (365)
T ss_dssp CTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECSS----
T ss_pred CCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecCC----
Confidence 3345432 222 12456788999999998766422 2489999998 56554432211000
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce----EEEeec------c------
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE----ILHKLD------L------ 456 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~----~l~~~~------~------ 456 (958)
...+++.+.|||||+.+++.. ...+.+.+++.+. +.++.. .+.... .
T Consensus 191 ----~g~~p~~~~~spdg~~l~v~~------------~~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 191 ----PGDHPRWVAMHPTGNYLYALM------------EAGNRICEYVIDP-ATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ----TTCCEEEEEECTTSSEEEEEE------------TTTTEEEEEEECT-TTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ----CCCCCCEeEECCCCCEEEEEE------------CCCCeEEEEEEeC-CCCcEEEccceEEcCCCCcCCcccccccc
Confidence 013467899999999887631 1133555554311 233332 121111 1
Q ss_pred -ccCcee-eecCCceEEEEEeccc----cceEEEEEcCCCCCCCcEEE---eccCCccccCCCCCCceEecc---CCceE
Q 002164 457 -RYGGIS-WCDDSLALVYESWYKT----RRTRTWVISPGSKDVAPRIL---FDRSSEDVYSDPGSPMMRRTS---TGTYV 524 (958)
Q Consensus 457 -~~~~~~-~spDg~~l~~~~~~~~----~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~sp---dG~~l 524 (958)
....++ |||||++|+.+..... ....+|.++. ++ +...+ .......... ++||| ||++|
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g--~~~~~~~~~~~~~~~~~~------~a~sp~~~dg~~l 324 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CG--SIEKQLFLSPTPTSGGHS------NAVSPCPWSDEWM 324 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TS--CEEEEEEEEECSSCCTTC------CCEEECTTCTTEE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CC--CEEEeeeeeecCCCCccc------ceecCCCcCCCEE
Confidence 245688 9999999865543221 0355666653 22 22221 1111111111 67899 89998
Q ss_pred EEEe
Q 002164 525 IAKI 528 (958)
Q Consensus 525 ~~~~ 528 (958)
+...
T Consensus 325 ~v~~ 328 (365)
T 1jof_A 325 AITD 328 (365)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8765
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=140.22 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=134.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++....-+ ++.|.||++||.+.... .|. .....|+ .+|.|++ .|.+|+|
T Consensus 15 ~g~~l~y~~~G~--------g~~~pvvllHG~~~~~~-----------~w~----~~~~~L~-~~~~via---~Dl~G~G 67 (316)
T 3afi_E 15 LGSSMAYRETGA--------QDAPVVLFLHGNPTSSH-----------IWR----NILPLVS-PVAHCIA---PDLIGFG 67 (316)
T ss_dssp TTEEEEEEEESC--------TTSCEEEEECCTTCCGG-----------GGT----TTHHHHT-TTSEEEE---ECCTTST
T ss_pred CCEEEEEEEeCC--------CCCCeEEEECCCCCchH-----------HHH----HHHHHHh-hCCEEEE---ECCCCCC
Confidence 788887665421 22457999999753221 111 1233454 4599999 6667888
Q ss_pred Ccccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC---CCCC--
Q 002164 728 DEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR---TLTP-- 800 (958)
Q Consensus 728 ~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~---~~~~-- 800 (958)
.+.... .......+|+.+.++.+ +-+++.|+||||||.+++.+|.++|++++++|++++.... ....
T Consensus 68 ~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 141 (316)
T 3afi_E 68 QSGKPDIAYRFFDHVRYLDAFIEQR------GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHT 141 (316)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccch
Confidence 875432 22456666666666543 2358999999999999999999999999999998763210 0000
Q ss_pred -----------CC-----ccccc----------------------chhhh-cHHHHHh-----------------cCc--
Q 002164 801 -----------FG-----FQNED----------------------RTLWE-ATSTYVE-----------------MSP-- 822 (958)
Q Consensus 801 -----------~~-----~~~~~----------------------~~~~~-~~~~~~~-----------------~sp-- 822 (958)
.. +.... ..... ..+.|.. ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (316)
T 3afi_E 142 EVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAG 221 (316)
T ss_dssp CCGGGHHHHHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTT
T ss_pred hhccccccchhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccc
Confidence 00 00000 00000 0000100 000
Q ss_pred ------------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHH
Q 002164 823 ------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (958)
Q Consensus 823 ------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i 890 (958)
...+.++++|+|+++|++|..+| +..++++.+.+. ..+++++|++||... .+....+.+.|
T Consensus 222 ~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~GH~~~-~e~p~~~~~~i 294 (316)
T 3afi_E 222 EPADVYEALQSAHAALAASSYPKLLFTGEPGALVS--PEFAERFAASLT----RCALIRLGAGLHYLQ-EDHADAIGRSV 294 (316)
T ss_dssp BSHHHHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSS----SEEEEEEEEECSCHH-HHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhccCCCeEEEecCCCCccC--HHHHHHHHHhCC----CCeEEEcCCCCCCch-hhCHHHHHHHH
Confidence 01123578999999999999988 777777776654 368999999999864 56677888999
Q ss_pred HHHHHHhhc
Q 002164 891 DRWLQKYCV 899 (958)
Q Consensus 891 ~~fl~~~l~ 899 (958)
.+||.+...
T Consensus 295 ~~fl~~~~~ 303 (316)
T 3afi_E 295 AGWIAGIEA 303 (316)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhcCC
Confidence 999987653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-12 Score=139.30 Aligned_cols=302 Identities=8% Similarity=-0.005 Sum_probs=173.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC---CeEEEEEecCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---STLLVCTIPLL 265 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD---G~~l~~~~~~~ 265 (958)
..+....|+|||+.++.+... ..+...|.+|++.+++...+..... ...+..++|+|+ |+.|+...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~-----~~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~--- 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNF-----ARGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGD--- 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC-------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEE---
T ss_pred CceEEEEEcCCCceEEEecCc-----cCCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEec---
Confidence 468899999999888876521 1136688999998887654432111 112778999998 68888662
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecCCC-cccccc----
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIGPP-AVYTSL---- 337 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~~~-~~~~~~---- 337 (958)
....|.++++ +++ ...+... ..+..+
T Consensus 88 ----------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 88 ----------------------------------------------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ----------------------------------------------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred ----------------------------------------------CCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 1234667777 543 3444433 445544
Q ss_pred --ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceee----eecC
Q 002164 338 --DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN----WRSD 409 (958)
Q Consensus 338 --~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~----~spD 409 (958)
+|+|||+.|+..+.+ +.+.+||+..+. ...+........ ..+..+. |+||
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGENK---------RDCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSCC---------CCEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCCC---------CceEEEEEEeccCCC
Confidence 789999999887733 489999998543 333332221110 1233444 8899
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeec---CCceEEEEEeccccceEEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD---DSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~~l~~~ 486 (958)
|+.++.. ...+.|++|++ ..++..........+..+.|+| +++.|+.....+. ..+|.+
T Consensus 180 ~~~l~~~-------------~~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~ 241 (357)
T 3i2n_A 180 ERVVCAG-------------YDNGDIKLFDL---RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK--FHVFDM 241 (357)
T ss_dssp CCEEEEE-------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE--EEEEEE
T ss_pred CCEEEEE-------------ccCCeEEEEEC---ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe--EEEEeC
Confidence 9987773 44568999996 5555555555667788899999 9998888754432 445544
Q ss_pred cCCCCCCCcEEE---eccCCccccCCCCCCceEeccCCc-eEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCC
Q 002164 487 SPGSKDVAPRIL---FDRSSEDVYSDPGSPMMRRTSTGT-YVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (958)
Q Consensus 487 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g 562 (958)
.... ...... .......+.. +.|+|+|+ .++.... ...|++||+..+
T Consensus 242 ~~~~--~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~~~~---------------------dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQH--PTKGFASVSEKAHKSTVWQ------VRHLPQNRELFLTAGG---------------------AGGLHLWKYEYP 292 (357)
T ss_dssp EEEE--TTTEEEEEEEECCSSCEEE------EEEETTEEEEEEEEET---------------------TSEEEEEEEECC
T ss_pred cCCC--cccceeeeccCCCcCCEEE------EEECCCCCcEEEEEeC---------------------CCcEEEeecCCC
Confidence 3222 111111 1123333333 78999998 4544431 125888888765
Q ss_pred ceEEEecCCccccc-----ceeEee---cCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 563 SKERIWESDKEKYY-----ETTVAL---MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 563 ~~~~l~~~~~~~~~-----~~~~~~---~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
.........+.... ..+..+ ...-...+|++||+.++++... ...++++++.+.
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~ 354 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKL 354 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC-
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCc
Confidence 44322221111000 000000 0111236789999888765543 245778876554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-11 Score=138.16 Aligned_cols=214 Identities=7% Similarity=0.005 Sum_probs=124.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE--eccCCccccCcccccccccCcceeeeecC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~--l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
..+..++|+|||++|++... .+.+++|++....... +... .+....+..+.|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~-------------~g~v~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADK-------------FGDVYSIDINSIPEEKFTQEPI----------LGHVSMLTDVHLIKD 206 (450)
T ss_dssp SCEEEEEECTTSSEEEEEET-------------TSEEEEEETTSCCCSSCCCCCS----------EECSSCEEEEEEEEC
T ss_pred CCceEEEEcCCCCEEEEEeC-------------CCcEEEEecCCcccccccceee----------ecccCceEEEEEcCC
Confidence 56788999999999998863 3489999987543221 1011 112245678999999
Q ss_pred ---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE-EEeeccccCceeeecCCceEEEEEeccccceEEEE
Q 002164 410 ---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 410 ---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (958)
|+.|+.. +..+.|++|++ ..+..... +..+...+..+.|+ ||+.|+..+.++ .|.+
T Consensus 207 ~~~~~~l~s~-------------~~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~----~v~v 266 (450)
T 2vdu_B 207 SDGHQFIITS-------------DRDEHIKISHY--PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD----KIFA 266 (450)
T ss_dssp TTSCEEEEEE-------------ETTSCEEEEEE--SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS----EEEE
T ss_pred CCCCcEEEEE-------------cCCCcEEEEEC--CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC----eEEE
Confidence 7766652 34567889986 23333333 23456677889999 999988776333 4666
Q ss_pred EcCCCCCCCcEEEeccCC--ccc-----------------cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 486 ISPGSKDVAPRILFDRSS--EDV-----------------YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+++.++ +......... ... ......-.+.|+|||++|+....
T Consensus 267 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----------------- 327 (450)
T 2vdu_B 267 WDWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE----------------- 327 (450)
T ss_dssp EETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-----------------
T ss_pred EECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-----------------
Confidence 676664 2222221100 000 00000112678999998887751
Q ss_pred CCCCCCeEEEEEC--CCC---ceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCc------eEEEEE
Q 002164 547 PEGNIPFLDLFDI--NTG---SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT------QYYIQS 615 (958)
Q Consensus 547 ~~~~~~~L~~~dl--~~g---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~------~~~~~d 615 (958)
....|++|++ .++ +.......... +. .++|+++ .+++...+...|. .+|.++
T Consensus 328 ---~d~~i~iw~~~~~~~~~l~~~~~~~~~~~-----v~-------~~~~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 328 ---ATKCIIILEMSEKQKGDLALKQIITFPYN-----VI-------SLSAHND--EFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ---TCSEEEEEEECSSSTTCEEEEEEEECSSC-----EE-------EEEEETT--EEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ---CCCeEEEEEeccCCCCceeeccEeccCCc-----eE-------EEEecCC--cEEEEEecccCCCCCCcceEEEEEE
Confidence 1125888998 443 22222222211 12 2457773 4666666655453 788888
Q ss_pred CCCCCeeEee
Q 002164 616 WPDKKSCQIT 625 (958)
Q Consensus 616 ~~~g~~~~Lt 625 (958)
..+++.+ ++
T Consensus 391 ~~~~~~~-~~ 399 (450)
T 2vdu_B 391 LNENSFV-VN 399 (450)
T ss_dssp TTTTEEE-EC
T ss_pred cCCCeEE-Ec
Confidence 7777654 56
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-11 Score=133.99 Aligned_cols=245 Identities=8% Similarity=0.042 Sum_probs=156.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc----eeeccCCCCccccccccceEEecCCe-EEEEEec
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNST-LLVCTIP 263 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~----~~~lt~~~~~~~~~~~~~~~wspDG~-~l~~~~~ 263 (958)
..+...+|+|||+.|+.... ...|++|++.+++ .+.+...... +..++|+|||+ .|++..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~- 76 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLRYKHP-----LLCCNFIDNTDLQIYVGT- 76 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEECSSC-----EEEEEEEESSSEEEEEEE-
T ss_pred CcEEEEEEcCCCCEEEEEcC---------CCeEEEEEeCCCCccccceeeeecCCc-----eEEEEECCCCCcEEEEEc-
Confidence 46889999999999988652 5678888887776 4444433222 77899999999 888762
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecCC--C-ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP--P-AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~~--~-~~~~~~~ 338 (958)
....|.++++ +++...+.. . ..+..+.
T Consensus 77 ------------------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 77 ------------------------------------------------VQGEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp ------------------------------------------------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred ------------------------------------------------CCCeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 1234667776 345556655 5 6788999
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC---------ceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG---------IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~---------~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
|+| ++.|+..+. ++.|.+||+.+ +.. +.... ....+..+.|+|+
T Consensus 109 ~~~-~~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~~~~~--~~~~~-----------~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASW-------------DGLIEVIDPRNYGDGVIAVKNLN--SNNTK-----------VKNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEET-------------TSEEEEECHHHHTTBCEEEEESC--SSSSS-----------SCCCEEEEEECSS
T ss_pred eCC-CCEEEEEcC-------------CCeEEEEcccccccccccccCCe--eeEEe-----------eCCceEEEEecCC
Confidence 999 888887763 34899999874 221 11111 1144578999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCC-CCC-ceEE-EeeccccCceeeec-CCceEEEEEeccccceEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEG-PEIL-HKLDLRYGGISWCD-DSLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~-~~~l-~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~ 485 (958)
+ ++.. ...+.|++|++ .. +.. .... ......+..+.|+| +|+.|+.....+. ..+|.
T Consensus 162 ~--l~~~-------------~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--i~i~~ 222 (342)
T 1yfq_A 162 R--LIVG-------------MNNSQVQWFRL--PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR--VAVEF 222 (342)
T ss_dssp E--EEEE-------------ESTTEEEEEES--SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE--EEEEE
T ss_pred c--EEEE-------------eCCCeEEEEEC--CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc--EEEEE
Confidence 8 4432 34567999996 22 222 2222 33455677899999 9998887765432 66777
Q ss_pred EcCCCCC--CCcEEEeccCCc---------cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeE
Q 002164 486 ISPGSKD--VAPRILFDRSSE---------DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (958)
Q Consensus 486 ~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (958)
++..+.. ......+..... .+.. ++|+|||++|+....+ ..|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~d---------------------g~i 275 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS------IEFSPRHKFLYTAGSD---------------------GII 275 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE------EEECTTTCCEEEEETT---------------------SCE
T ss_pred EcCCCcccccccceeeecccccccccccceeEEE------EEEcCCCCEEEEecCC---------------------ceE
Confidence 7665100 122223322211 2222 7899999988876521 259
Q ss_pred EEEECCCCceEEEec
Q 002164 555 DLFDINTGSKERIWE 569 (958)
Q Consensus 555 ~~~dl~~g~~~~l~~ 569 (958)
++||+.+++......
T Consensus 276 ~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 276 SCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEEETTTTEEEEECC
T ss_pred EEEcCccHhHhhhhh
Confidence 999999887655443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=147.75 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=136.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--eeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+...+|||||++|+... ....|.+|++.++. .......... .+..++|+|||++|+...
T Consensus 13 ~v~~~~~s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s----- 74 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTFSDHDK----IVTCVDWAPKSNRIVTCS----- 74 (377)
T ss_dssp CCSCCEECSSSSEEECCC---------SSSCBCEEEEETTEEEECCCBCCCSS----CEEEEEECTTTCCEEEEE-----
T ss_pred cEEEEEECCCCCEEEEec---------CCCEEEEEEccCCceEEEEEEecCCc----eEEEEEEeCCCCEEEEEe-----
Confidence 588899999999988743 35567777777763 3222222222 277899999999998762
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----eeecCCC-ccccccccCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VKEIGPP-AVYTSLDPSP 341 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----~~~l~~~-~~~~~~~~Sp 341 (958)
....|.++++ +++ ...+... ..+..++|+|
T Consensus 75 --------------------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 75 --------------------------------------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp --------------------------------------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred --------------------------------------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 1234666666 554 3334344 6788999999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCce----EEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
||+.|+..+.+ +.+.+||++++. .+.+... ....+..+.|+|||+.++..
T Consensus 111 ~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~~~- 164 (377)
T 3dwl_C 111 NEDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKRP------------LRSTILSLDWHPNNVLLAAG- 164 (377)
T ss_dssp TSSCCEEEESS-------------SCEEECCC-----CCCCEEECSS------------CCSCEEEEEECTTSSEEEEE-
T ss_pred CCCEEEEEecC-------------CeEEEEEECCcccceeeeEeecc------------cCCCeEEEEEcCCCCEEEEE-
Confidence 99999988743 489999998654 2333320 11456789999999977763
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCC--C--------C--CceEE-E--eeccccCceeeecCCceEEEEEeccccceE
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQ--G--------E--GPEIL-H--KLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--g--------~--~~~~l-~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
+..+.|.+|++.... . . ....+ . .+...+..+.|+|||+.|+..+.++. .+
T Consensus 165 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--i~ 230 (377)
T 3dwl_C 165 ------------CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSS--VT 230 (377)
T ss_dssp ------------ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTE--EC
T ss_pred ------------eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCc--EE
Confidence 345568888851000 0 0 00111 1 33445677999999999988765433 44
Q ss_pred EEEEcCCCCCCCc--EEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 483 TWVISPGSKDVAP--RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 483 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+|.+. ++.... ..........+.. +.|+|||++|+...
T Consensus 231 iwd~~--~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 231 IAYPS--APEQPPRALITVKLSQLPLRS------LLWANESAIVAAGY 270 (377)
T ss_dssp -CEEC--STTSCEEECCCEECSSSCEEE------EEEEETTEEEEEES
T ss_pred EEECC--CCCCcceeeEeecCCCCceEE------EEEcCCCCEEEEEc
Confidence 55544 431111 1112222222333 78999999887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=140.13 Aligned_cols=226 Identities=13% Similarity=0.091 Sum_probs=146.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc---eeeccCCCCccccccccceEEecCCeEEEEEecCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (958)
..+...+|+|||+.|++.. ....|++|++++++ ...+..... . +..++|+|||+.|+...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~~-~----v~~~~~~~~~~~l~~~~--- 71 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHNG-Q----VTGVDWAPDSNRIVTCG--- 71 (372)
T ss_dssp SCCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCSS-C----EEEEEEETTTTEEEEEE---
T ss_pred CCeEEEEECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCCC-c----ccEEEEeCCCCEEEEEc---
Confidence 4688899999999998853 25688999988885 333332222 2 77899999999998762
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee---ecCCC-ccccccccC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPS 340 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~l~~~-~~~~~~~~S 340 (958)
....|.++++ +++.. .+... ..+..+.|+
T Consensus 72 ----------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 72 ----------------------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ----------------------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 1234667777 66422 22333 678899999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE----EEeccCCccccCcccccccccCcceeeeecCCCCceEE
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV----RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~----~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~ 416 (958)
|||+.|+....+ +.+.+|+++.+.. +.+.. .....+..+.|+|||+.++..
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKK------------PIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECT------------TCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeec------------ccCCCeeEEEEcCCCCEEEEE
Confidence 999999988733 4899999985541 22211 111345789999999977763
Q ss_pred EEeccCCCcccccccCCeEEEEeCCC----------------CCCCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEP----------------VQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
+..+.+++|++.. ..+.....+......+..+.|+|||+.|+.....+
T Consensus 161 -------------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 224 (372)
T 1k8k_C 161 -------------SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS--- 224 (372)
T ss_dssp -------------ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---
T ss_pred -------------cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---
Confidence 3456788888410 01222233334455677899999999888776433
Q ss_pred eEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 481 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
.|.++++..+ +...........+.. +.|+|||+.|+..
T Consensus 225 -~i~i~d~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 225 -TVCLADADKK--MAVATLASETLPLLA------VTFITESSLVAAG 262 (372)
T ss_dssp -EEEEEEGGGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred -EEEEEECCCC--ceeEEEccCCCCeEE------EEEecCCCEEEEE
Confidence 3555666553 333333333333333 7899999877655
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-12 Score=135.51 Aligned_cols=206 Identities=12% Similarity=0.018 Sum_probs=125.5
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++....- + .|.||++||.+.... .| ......|+++ |.|++ .|.+|+
T Consensus 16 ~~g~~l~y~~~G--------~--g~~lvllHG~~~~~~-----------~w----~~~~~~L~~~-~~via---~Dl~G~ 66 (294)
T 1ehy_A 16 LPDVKIHYVREG--------A--GPTLLLLHGWPGFWW-----------EW----SKVIGPLAEH-YDVIV---PDLRGF 66 (294)
T ss_dssp CSSCEEEEEEEE--------C--SSEEEEECCSSCCGG-----------GG----HHHHHHHHTT-SEEEE---ECCTTS
T ss_pred ECCEEEEEEEcC--------C--CCEEEEECCCCcchh-----------hH----HHHHHHHhhc-CEEEe---cCCCCC
Confidence 478888765542 1 367899999652211 11 1234455555 99999 666788
Q ss_pred CCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC-
Q 002164 727 GDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT- 799 (958)
Q Consensus 727 G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~- 799 (958)
|.+..+. -......+|+.+.++.+ .-+++.|+||||||.+++.+|.++|++++++|++++.......
T Consensus 67 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~ 140 (294)
T 1ehy_A 67 GDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPV 140 (294)
T ss_dssp TTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---
T ss_pred CCCCCCccccccCcCHHHHHHHHHHHHHHc------CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchh
Confidence 8876542 12445566666665543 2358999999999999999999999999999999863211000
Q ss_pred ---------CCC--cc----------ccc---c--------------hhh-hc-HHHHH-----------------hc--
Q 002164 800 ---------PFG--FQ----------NED---R--------------TLW-EA-TSTYV-----------------EM-- 820 (958)
Q Consensus 800 ---------~~~--~~----------~~~---~--------------~~~-~~-~~~~~-----------------~~-- 820 (958)
.|. +. ... . ..+ +. .+.+. ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (294)
T 1ehy_A 141 YFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIR 220 (294)
T ss_dssp --------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSS
T ss_pred hccchhccCceEEEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHh
Confidence 000 00 000 0 000 00 00010 00
Q ss_pred Cccc-----ccCCCCCCEEEEeeCCCCCCCCCh-HHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 821 SPFM-----SANKLKKPILLVHGEEDNNSGTLT-MQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 821 sp~~-----~~~~~~~P~Lii~G~~D~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
.... .+.++++|+|+++|++|..+| . .....+.+.+ ...+++++|++||... .++...+.+.+.+||
T Consensus 221 ~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 221 PDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY----SNYTMETIEDCGHFLM-VEKPEIAIDRIKTAF 293 (294)
T ss_dssp SSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB----SSEEEEEETTCCSCHH-HHCHHHHHHHHHHHC
T ss_pred hhhhhcCCcccCcCCCCEEEEEeCCCCCcc--hHHHHHHHHHHc----CCCceEEeCCCCCChh-hhCHHHHHHHHHHHh
Confidence 0001 122788999999999999876 4 3444444332 2479999999999863 556677778888875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=132.02 Aligned_cols=247 Identities=12% Similarity=0.113 Sum_probs=151.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.||++... +......+.++ ..
T Consensus 11 ~V~~~~~s~~g~~las~s~D---------------------------------~~v~iw~~~~~-~~~~~~~l~gH--~~ 54 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSD---------------------------------KTIKIFEVEGE-THKLIDTLTGH--EG 54 (297)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEBCSS-CBCCCEEECCC--SS
T ss_pred ceEEEEECCCCCEEEEEeCC---------------------------------CEEEEEecCCC-CcEEEEEEccc--cC
Confidence 45678999999999998875 47899998531 11223455543 35
Q ss_pred cccceeecCC--CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC--CeEEEEEecCC
Q 002164 190 KLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~ 265 (958)
.+....|+|+ |+.|+... ....|.+|++.+++...+..... ....+..++|+|+ |..|+...
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s---------~D~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s--- 120 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCS---------YDGKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVAS--- 120 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE---------TTTEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEE---
T ss_pred CeEEEEecCCCcCCEEEEEc---------CCCEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEE---
Confidence 7889999874 88887755 25688889988775332221111 0112778999998 88888662
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-ccccccccC
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDPS 340 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~S 340 (958)
....|.++++ ++. ...+... ..+...+|+
T Consensus 121 ----------------------------------------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 121 ----------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp ----------------------------------------------TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred ----------------------------------------------CCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 1234666666 442 2223233 567788999
Q ss_pred CC-------------CcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceee
Q 002164 341 PD-------------EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 341 pD-------------Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
|+ ++.|+..+. ++.|.+||+..+. ...+.... ++...+..++
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~-------------D~~v~lwd~~~~~~~~~~~~~l~----------~H~~~V~~v~ 211 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGA-------------DNLVKIWKYNSDAQTYVLESTLE----------GHSDWVRDVA 211 (297)
T ss_dssp CCC------------CCEEEEEET-------------TSCEEEEEEETTTTEEEEEEEEC----------CCSSCEEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcC-------------CCcEEEEEEcCCCceEEEEEEec----------CCCCceEEEE
Confidence 97 467776653 3489999987532 11111111 1224567899
Q ss_pred eecCC---CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEEecccc
Q 002164 406 WRSDK---PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 406 ~spDG---~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
|+||+ +.|+.. +..+.|.+|+++...+.....+. .....+..++|+|||+.|+....++.
T Consensus 212 ~sp~~~~~~~las~-------------s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~- 277 (297)
T 2pm7_B 212 WSPTVLLRSYMASV-------------SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK- 277 (297)
T ss_dssp ECCCCSSSEEEEEE-------------ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-
T ss_pred ECCCCCCceEEEEE-------------ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-
Confidence 99996 334331 44567888886211111111221 23345667899999999988765543
Q ss_pred ceEEEEEcCCC
Q 002164 480 RTRTWVISPGS 490 (958)
Q Consensus 480 ~~~l~~~~~~~ 490 (958)
.+||..+..+
T Consensus 278 -v~lw~~~~~g 287 (297)
T 2pm7_B 278 -VTLWKENLEG 287 (297)
T ss_dssp -EEEEEECTTS
T ss_pred -EEEEEECCCC
Confidence 7888876553
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=134.87 Aligned_cols=271 Identities=9% Similarity=0.019 Sum_probs=148.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||| .||..+.+ +.|.+|++..+. ......+....+..
T Consensus 16 ~v~~~~~s~~--~las~~~D---------------------------------~~i~lw~~~~~~-~~~~~~~~~~~h~~ 59 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTD---------------------------------RKIKLVSVKYDD-FTLIDVLDETAHKK 59 (330)
T ss_dssp CEEEEEEETT--EEEEEESS---------------------------------SCEEEEECSSSC-CEEEEEECTTCCCS
T ss_pred ceeeeccCCC--EEEEEcCC---------------------------------CEEEEEEecCCC-eEEEEEEecCCccC
Confidence 4567888888 67766654 478999985411 11122221111234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-------ceeeccCCCCccccccccceEEecCCeEEEEEe
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-------KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
.+...+|+|||+.|+.... ...|.+|+++.+ +.......... .+..++|+|||++|+...
T Consensus 60 ~v~~v~~sp~~~~las~s~---------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF---------DSTVSIWAKEESADRTFEMDLLAIIEGHEN----EVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeC---------CCcEEEEEcccCcCccccceeEEEEcCCCC----cEEEEEECCCCCEEEEEe
Confidence 6889999999998887552 456777776432 11111111222 277899999999998762
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C-C---e-eeecCCC-cccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-G---T-VKEIGPP-AVYT 335 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~-g---~-~~~l~~~-~~~~ 335 (958)
. ...|.++++ . + + ...+... ..+.
T Consensus 127 ~-------------------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 127 R-------------------------------------------------DKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp T-------------------------------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred C-------------------------------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 1 123555555 2 2 1 2234434 6788
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC--CCc
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK--PST 413 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG--~~l 413 (958)
.++|+|||+.|+..+.+ +.|.+|++..+..+.+.... +....+..+.|+|++ ..|
T Consensus 158 ~v~~~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 158 HVIWHPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVLN----------GHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp EEEECSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCSSSSCEE
T ss_pred EEEECCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEcc----------CCCCcEEEEEecCCCCeeEE
Confidence 99999999999877733 48999998765333322221 111345678999994 333
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCC---c---eEE---Ee-eccccCceeeecCCceEEEEEeccccceEE
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---P---EIL---HK-LDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~---~~l---~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
+.. +..+.|.+|++ .++. . ..+ .. +...+..++|++++ .|+....++. .+|
T Consensus 215 ~s~-------------s~D~~v~iw~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~--v~i 275 (330)
T 2hes_X 215 CSG-------------SDDSTVRVWKY---MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV--LAV 275 (330)
T ss_dssp EEE-------------ETTSCEEEEEE---EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC--EEE
T ss_pred EEE-------------eCCCeEEEEEe---cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE--EEE
Confidence 331 33456777774 2111 0 111 11 34456778999766 5655543332 667
Q ss_pred EEEcCCCCCCCcEE-EeccCCc-cccCCCCCCceEecc--CCceEEEEe
Q 002164 484 WVISPGSKDVAPRI-LFDRSSE-DVYSDPGSPMMRRTS--TGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~sp--dG~~l~~~~ 528 (958)
|... ++..+... ....... .+.. ++|+| ||+.|+...
T Consensus 276 w~~~--~~~~~~~~~~~~~h~~~~v~~------v~~~~~~~~~~las~s 316 (330)
T 2hes_X 276 YEEV--DGEWKVFAKRALCHGVYEINV------VKWLELNGKTILATGG 316 (330)
T ss_dssp EEEE--TTEEEEEEEESCTTTTSCEEE------EEEC-----CCEEEEE
T ss_pred EEcC--CCceEEEeccccccccceEEE------EEEecCCCceEEEEec
Confidence 7654 21001111 1111111 2222 67999 788887766
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-11 Score=128.87 Aligned_cols=298 Identities=8% Similarity=0.022 Sum_probs=169.9
Q ss_pred eeccCCCCCcccceeecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCce-----eeccCCCCccccccccceEEecC
Q 002164 181 EIQGFPDGAKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspD 254 (958)
.|.++. +.+...+|+||+ +.|+... ....|.+|++..++. .+....... .+..++|+||
T Consensus 33 tL~GH~--~~V~~v~~sp~~~~~l~S~s---------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~----~V~~~~~s~d 97 (340)
T 4aow_A 33 TLKGHN--GWVTQIATTPQFPDMILSAS---------RDKTIIMWKLTRDETNYGIPQRALRGHSH----FVSDVVISSD 97 (340)
T ss_dssp EECCCS--SCEEEEEECTTCTTEEEEEE---------TTSCEEEEEECCSSSCSEEEEEEECCCSS----CEEEEEECTT
T ss_pred EECCcc--CCEEEEEEeCCCCCEEEEEc---------CCCeEEEEECCCCCcccceeeEEEeCCCC----CEEEEEECCC
Confidence 355543 579999999985 5555543 234677777765432 111111122 2778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~- 331 (958)
|+.|+... ....|..++. .+... .....
T Consensus 98 g~~l~s~~-------------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~ 128 (340)
T 4aow_A 98 GQFALSGS-------------------------------------------------WDGTLRLWDLTTGTTTRRFVGHT 128 (340)
T ss_dssp SSEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECCS
T ss_pred CCEEEEEc-------------------------------------------------ccccceEEeecccceeeeecCCC
Confidence 99998762 1234556666 44322 22222
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.......++++++.|+..+.+ +.+.+||+.+.....+.... ....+..+.|++++.
T Consensus 129 ~~~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 129 KDVLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDES-----------HSEWVSCVRFSPNSS 184 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSS-----------CSSCEEEEEECSCSS
T ss_pred CceeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEEEEecc-----------ccCcccceEEccCCC
Confidence 455677899999999877633 47889998865543332211 113446688999887
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..++.+. +....|.+|+. ..+.....+......+..++|+|||+.|+....++ .|.++++...
T Consensus 185 ~~~~~s~-----------~~d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~~~ 247 (340)
T 4aow_A 185 NPIIVSC-----------GWDKLVKVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLNEG 247 (340)
T ss_dssp SCEEEEE-----------ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETTTT
T ss_pred CcEEEEE-----------cCCCEEEEEEC--CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEeccC
Confidence 7655322 33456888885 22323333444566678899999999888765433 3555566553
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
+........ ..+.. +.|+|++..++... ...|++||++++.........
T Consensus 248 --~~~~~~~~~-~~v~~------~~~~~~~~~~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~ 296 (340)
T 4aow_A 248 --KHLYTLDGG-DIINA------LCFSPNRYWLCAAT----------------------GPSIKIWDLEGKIIVDELKQE 296 (340)
T ss_dssp --EEEEEEECS-SCEEE------EEECSSSSEEEEEE----------------------TTEEEEEETTTTEEEEEECCC
T ss_pred --ceeeeecCC-ceEEe------eecCCCCceeeccC----------------------CCEEEEEECCCCeEEEecccc
Confidence 222222221 11222 67899987655443 125899999877654433322
Q ss_pred cccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 572 KEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
.. ..........-...+|+|||+.|+.... ...|++|++.+|+
T Consensus 297 ~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs~----Dg~v~iW~~~tGt 339 (340)
T 4aow_A 297 VI--STSSKAEPPQCTSLAWSADGQTLFAGYT----DNLVRVWQVTIGT 339 (340)
T ss_dssp ---------CCCCCEEEEEECTTSSEEEEEET----TSCEEEEEEEC--
T ss_pred ce--eeeccCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeCCCcC
Confidence 11 0000000001123579999987664333 2458899988875
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-11 Score=130.99 Aligned_cols=289 Identities=10% Similarity=-0.034 Sum_probs=157.3
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
.++++++++.++... ....|+++|+++++..+....+... ....++|+|||+.++++..
T Consensus 4 g~~~~~~~~~~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~~~v~~~--------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN---------YPNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN--------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEE---------TTTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET---------
T ss_pred cccccCCCEEEEEeC---------CCCeEEEEECCCCcEEEEEecCCCC---CCceeEECCCCCEEEEEeC---------
Confidence 456787776555433 2668999999998876554433300 1458899999998876610
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCC-------ccccccccCCCC
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-------AVYTSLDPSPDE 343 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-------~~~~~~~~SpDG 343 (958)
...+|+++++ +++... +... ..+..++|||||
T Consensus 63 ---------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg 103 (349)
T 1jmx_B 63 ---------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG 103 (349)
T ss_dssp ---------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred ---------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC
Confidence 2346889998 775442 3221 125678999999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
++|++......... ..+....+.+++||+++++... +..... ...+..++|+|||+ +++.
T Consensus 104 ~~l~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~dg~-l~~~------ 164 (349)
T 1jmx_B 104 KEVYATVNPTQRLN-DHYVVKPPRLEVFSTADGLEAKPVRTFPM-----------PRQVYLMRAADDGS-LYVA------ 164 (349)
T ss_dssp SEEEEEEEEEEECS-SCEEECCCEEEEEEGGGGGGBCCSEEEEC-----------CSSCCCEEECTTSC-EEEE------
T ss_pred CEEEEEcccccccc-cccccCCCeEEEEECCCccccceeeeccC-----------CCcccceeECCCCc-EEEc------
Confidence 99998874300000 0000012489999998643211 111110 12345678999999 5542
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeecc-------------------------ccCceeeecCCceEEEEEecc
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-------------------------RYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-------------------------~~~~~~~spDg~~l~~~~~~~ 477 (958)
...|+++++ .+++......... ....+.+++|+........
T Consensus 165 ---------~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 230 (349)
T 1jmx_B 165 ---------GPDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD-- 230 (349)
T ss_dssp ---------SSSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--
T ss_pred ---------cCcEEEEeC---CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--
Confidence 123888885 4444332221111 0011233333221111000
Q ss_pred ccceEEEEEcCCCCCCCcEEE-eccCCccccCCCCCCceEecc-CCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEE
Q 002164 478 TRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLD 555 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 555 (958)
....++.++..++. ...+ .......... +.||| ||++++.. . ..|+
T Consensus 231 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~sp~dg~~l~~~-~----------------------~~v~ 278 (349)
T 1jmx_B 231 -LLYGYLSVDLKTGK--THTQEFADLTELYFT------GLRSPKDPNQIYGV-L----------------------NRLA 278 (349)
T ss_dssp -EEEEEEEEETTTCC--EEEEEEEECSSCEEE------EEECSSCTTEEEEE-E----------------------SEEE
T ss_pred -cceeEEEEeccCCc--EEecccccCCCccee------eEecCCCCCEEEEE-c----------------------CeEE
Confidence 11234446666542 1211 1111111111 67899 99987765 1 1599
Q ss_pred EEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 556 LFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 556 ~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
+||+++++.......... + ...+|++||+.+++.. ....++++++.+++..
T Consensus 279 ~~d~~~~~~~~~~~~~~~-----~-------~~~~~s~dg~~l~~~~----~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLGG----TFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEETTTTEEEEEEECSSC-----C-------CEEEECSSSSCEEEES----BSSEEEEEETTTTEEE
T ss_pred EEECccCeEEEEEcCCCC-----c-------cceEECCCCCEEEEec----CCCeEEEEecccccee
Confidence 999999887655543321 1 1357899999887732 2267999998887643
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=137.07 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=126.9
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++...+-+++ .|+||++||.+.... .|. .....| +++|.|++ .|.+|+|
T Consensus 7 ~g~~l~~~~~g~~~--------~~~vv~lHG~~~~~~-----------~~~----~~~~~L-~~~~~v~~---~D~~G~G 59 (264)
T 3ibt_A 7 NGTLMTYSESGDPH--------APTLFLLSGWCQDHR-----------LFK----NLAPLL-ARDFHVIC---PDWRGHD 59 (264)
T ss_dssp TTEECCEEEESCSS--------SCEEEEECCTTCCGG-----------GGT----THHHHH-TTTSEEEE---ECCTTCS
T ss_pred CCeEEEEEEeCCCC--------CCeEEEEcCCCCcHh-----------HHH----HHHHHH-HhcCcEEE---EccccCC
Confidence 77787766654321 578999999643211 111 234455 45699999 5666788
Q ss_pred Ccccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCCCCC---
Q 002164 728 DEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLTPF--- 801 (958)
Q Consensus 728 ~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~~~--- 801 (958)
.+... ........+|+.++++.+ +.+++.++|||+||.+++.+|.++ |++++++|++++... ....+
T Consensus 60 ~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~-~~~~~~~~ 132 (264)
T 3ibt_A 60 AKQTDSGDFDSQTLAQDLLAFIDAK------GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQ-PHPGFWQQ 132 (264)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSS-CCHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCC-cChhhcch
Confidence 77542 223456677777666653 335899999999999999999999 999999999987651 10000
Q ss_pred --------Ccc------------cccc-h----h-----hhcHHHHH------------hcCcccccCCCCCCEEEEeeC
Q 002164 802 --------GFQ------------NEDR-T----L-----WEATSTYV------------EMSPFMSANKLKKPILLVHGE 839 (958)
Q Consensus 802 --------~~~------------~~~~-~----~-----~~~~~~~~------------~~sp~~~~~~~~~P~Lii~G~ 839 (958)
.+. .... . . ......+. ..++...+.++++|+|++||.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~ 212 (264)
T 3ibt_A 133 LAEGQHPTEYVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIY 212 (264)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEE
T ss_pred hhcccChhhHHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEec
Confidence 000 0000 0 0 00000000 011225567889999999875
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.|...+..+....++.+.+ ...++++++++||... .++...+.+.+.+||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 213 SQPLSQDYRQLQLEFAAGH----SWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp CCSCCHHHHHHHHHHHHHC----TTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred CCccchhhHHHHHHHHHhC----CCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 5544321133334443332 3479999999999863 4566777777888764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=136.11 Aligned_cols=298 Identities=12% Similarity=0.032 Sum_probs=175.5
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeecc----
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG---- 184 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~---- 184 (958)
.+..++||| ||++|+....+ +.|.+|++.... .........
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~-~~~~~~~~~~~~~ 90 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSD---------------------------------GVIVLYDLENSS-RQSYYTCKAVCSI 90 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETT---------------------------------SCEEEEECCCCS-SSSCEEECEEEEE
T ss_pred cEEEEEEecCCCCEEEEEcCC---------------------------------CeEEEEECCCCc-ccceEeccccccc
Confidence 566889999 99999988765 478999985421 111111000
Q ss_pred -----CCCCCcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC---C
Q 002164 185 -----FPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN---S 255 (958)
Q Consensus 185 -----~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD---G 255 (958)
......+....|+| +++.|+... ....|.+|++.+++.......... +..+.|+|+ +
T Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 156 (408)
T 4a11_B 91 GRDHPDVHRYSVETVQWYPHDTGMFTSSS---------FDKTLKVWDTNTLQTADVFNFEET-----VYSHHMSPVSTKH 156 (408)
T ss_dssp CTTCTTCCSSCEEEEEECTTCTTCEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSSCSSC
T ss_pred cccccccCCCcEEEEEEccCCCcEEEEEe---------CCCeEEEeeCCCCccceeccCCCc-----eeeeEeecCCCCC
Confidence 01234788999999 666666644 256899999998887666544332 567788874 4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-c
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-A 332 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~ 332 (958)
..|+... ....|.++++ +++ ...+... .
T Consensus 157 ~~~~~~~-------------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 157 CLVAVGT-------------------------------------------------RGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEEE-------------------------------------------------SSSSEEEEESSSSCCCEEECCCCS
T ss_pred cEEEEEc-------------------------------------------------CCCeEEEEeCCCcceeeeecCCCC
Confidence 4777651 2345788888 664 3444444 6
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccc--cCcccccccccCcceeeeec
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAE--DIPIAFNSVRKGMRSINWRS 408 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~--~~p~~~~~~~~~~~~~~~sp 408 (958)
.+..++|+|||++++++... ++.+.+||+..+. ...+....... ............+..+.|+|
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASA------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp CEEEEEECSSCTTEEEEEET------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cEEEEEECCCCCcEEEEEcC------------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 78899999999975555433 3489999997543 22221111100 00111122334567899999
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce-EEEee----ccccCceee-ecCCceEEEEEeccccceE
Q 002164 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL----DLRYGGISW-CDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 409 DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~----~~~~~~~~~-spDg~~l~~~~~~~~~~~~ 482 (958)
||+.++.. +..+.|.+|++ ..++.. ..... ........+ ...+..+++....+ .
T Consensus 256 ~~~~l~~~-------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 315 (408)
T 4a11_B 256 DGLHLLTV-------------GTDNRMRLWNS---SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS----T 315 (408)
T ss_dssp TSSEEEEE-------------ETTSCEEEEET---TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT----E
T ss_pred CCCEEEEe-------------cCCCeEEEEEC---CCCccceeccccccccccccceeEEecCCCceEEEEecCC----E
Confidence 99988763 44567899996 333321 11111 111111222 23345566654432 4
Q ss_pred EEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCC
Q 002164 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g 562 (958)
|.++++.++ +...........+.. +.|+|||++|+....+ ..|.+||++++
T Consensus 316 i~v~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d---------------------g~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSG--EQITMLKGHYKTVDC------CVFQSNFQELYSGSRD---------------------CNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTC--CEEEEECCCSSCEEE------EEEETTTTEEEEEETT---------------------SCEEEEEECC-
T ss_pred EEEEECcCC--cceeeeccCCCeEEE------EEEcCCCCEEEEECCC---------------------CeEEEEeCCCC
Confidence 666777664 334444444444443 7899999998877521 25999999877
Q ss_pred ceE
Q 002164 563 SKE 565 (958)
Q Consensus 563 ~~~ 565 (958)
+..
T Consensus 367 ~~~ 369 (408)
T 4a11_B 367 EPV 369 (408)
T ss_dssp ---
T ss_pred Ccc
Confidence 643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=129.60 Aligned_cols=274 Identities=9% Similarity=0.065 Sum_probs=169.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc-eeeeccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~-~~~lt~~~~~ 188 (958)
.+..++| |||++|+....+ +.|.+|++.. +. ...+.. ..
T Consensus 20 ~v~~~~~-~~~~~l~s~~~d---------------------------------g~v~vw~~~~----~~~~~~~~~--~~ 59 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRD---------------------------------GTVRLWSKDD----QWLGTVVYT--GQ 59 (313)
T ss_dssp CEEEEEE-EETTEEEEEETT---------------------------------SEEEEEEESS----SEEEEEEEE--CS
T ss_pred CcEEEEe-cCCCEEEEEEcC---------------------------------CcEEEEECCC----CEEEEEeec--CC
Confidence 4667888 999999888765 4789999854 32 333333 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc----eeeccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~----~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
..+....|+|||+.|+.... ...|.+|++.... ...+.. ... .+..+.| +++.|+...
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~---------dg~i~~~~~~~~~~~~~~~~~~~-~~~----~i~~~~~--~~~~l~~~~-- 121 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGK---------DTMINGVPLFATSGEDPLYTLIG-HQG----NVCSLSF--QDGVVISGS-- 121 (313)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TSCEEEEETTCCTTSCC-CEECC-CSS----CEEEEEE--ETTEEEEEE--
T ss_pred ccEEEEEECCCCCEEEEecC---------CCeEEEEEeeecCCCCcccchhh-ccc----CEEEEEe--cCCEEEEEe--
Confidence 47889999999999988652 4567777766532 122211 111 2556777 566676551
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCC-C
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSP-D 342 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~Sp-D 342 (958)
....|.+++.......+... ..+....|+| +
T Consensus 122 -----------------------------------------------~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 122 -----------------------------------------------WDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp -----------------------------------------------TTSEEEEEETTEEEEEEECCSSCEEEEEEEETT
T ss_pred -----------------------------------------------CCCCEEEEcCCcEEEecccCCCceeEEEEccCC
Confidence 12345555632233333333 6677788888 8
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
++.|+..+.+ +.+.+||.. ...+.+... ....+..+.|+|+|+ ++..
T Consensus 155 ~~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~------------~~~~i~~~~~~~~~~-~~~~------ 201 (313)
T 3odt_A 155 ENKFLTASAD-------------KTIKLWQND-KVIKTFSGI------------HNDVVRHLAVVDDGH-FISC------ 201 (313)
T ss_dssp TTEEEEEETT-------------SCEEEEETT-EEEEEECSS------------CSSCEEEEEEEETTE-EEEE------
T ss_pred CCEEEEEECC-------------CCEEEEecC-ceEEEEecc------------CcccEEEEEEcCCCe-EEEc------
Confidence 9988877633 489999933 222332220 113457899999998 4432
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
+..+.|++|++ ..+.....+......+..+.|+|+| .|+.... + ..|+++++..+ +........
T Consensus 202 -------~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-d---g~v~iwd~~~~--~~~~~~~~~ 265 (313)
T 3odt_A 202 -------SNDGLIKLVDM--HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGE-D---RTVRIWSKENG--SLKQVITLP 265 (313)
T ss_dssp -------ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTS-CEEEEET-T---SEEEEECTTTC--CEEEEEECS
T ss_pred -------cCCCeEEEEEC--CchhhhhhhhcCCceEEEEEEecCC-CEEEEec-C---CEEEEEECCCC--ceeEEEecc
Confidence 44567999996 2344444555566778889999999 4554433 2 34777787774 334444444
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
...+.. +.|+|||+.++ ... ...|++||+++++..
T Consensus 266 ~~~i~~------~~~~~~~~~~~-~~~---------------------dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 266 AISIWS------VDCMSNGDIIV-GSS---------------------DNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEE------EEECTTSCEEE-EET---------------------TSCEEEEESCGGGCC
T ss_pred CceEEE------EEEccCCCEEE-EeC---------------------CCcEEEEeCCCCcee
Confidence 333333 78999998443 331 125999999876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-11 Score=134.99 Aligned_cols=262 Identities=9% Similarity=-0.020 Sum_probs=141.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
....++|||||++|+....+ .+.+|++..+| ....+...+.++
T Consensus 41 ~~~~~a~spdg~~l~~~~~~----------------------------------~v~~~~~~~~g---~~~~~~~~~~~g 83 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK----------------------------------KWSSFAVKSPT---EIVHEASHPIGG 83 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT----------------------------------EEEEEEEEETT---EEEEEEEEECCS
T ss_pred CCcEEEECCCCCEEEEEccc----------------------------------eEEEEEECCCC---CEEEeeEeecCC
Confidence 45678999999988655542 46778774223 322222111112
Q ss_pred cccceeecCCCCeE-EEEEeecccc-CCC----CCceEEEEEcC-CCcee-eccC---CCCccccccccceEEecCCeEE
Q 002164 190 KLNFVTWSQDGKHL-AFSIRIDAED-SSS----SKLRVWVADVD-TGKAR-PLFQ---SPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 190 ~~~~~~wSPDG~~i-af~~~~~~~~-~~~----~~~~l~~~~~~-~g~~~-~lt~---~~~~~~~~~~~~~~wspDG~~l 258 (958)
....++|||||++| +++.+..... ..+ ....+.+++++ .|+.. .+.. ..... +..++|+|||++|
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~spdG~~l 159 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG----IHGMVFDPTETYL 159 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC----EEEEEECTTSSEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc----ceEEEECCCCCEE
Confidence 35668999999973 4543200000 000 13345666654 34433 2221 01111 5689999999988
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeec---C--C-
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEI---G--P- 330 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l---~--~- 330 (958)
+++.. +...|+++++ +|+...+ . .
T Consensus 160 ~~~~~------------------------------------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 160 YSADL------------------------------------------------TANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EEEET------------------------------------------------TTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred EEEcC------------------------------------------------CCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 76510 1235777776 3654322 1 1
Q ss_pred CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEE----EeccCCccccCccccccccc-----
Q 002164 331 PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVR----ELCDLPLAEDIPIAFNSVRK----- 399 (958)
Q Consensus 331 ~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~----~l~~~~~~~~~p~~~~~~~~----- 399 (958)
+.....++|||||++|++.... .+.+.+|+++ ++... .+...+.. +.+...
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~------~~g~~~~~~~~ 253 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHHSFPLIPPG------IPDRDPETGKG 253 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEEEEESSCTT------CCCBCTTTSSB
T ss_pred CCCCCEeEECCCCCEEEEEECC------------CCeEEEEEEeCCCCcEEEccceEEcCCCC------cCCcccccccc
Confidence 2446778999999999887632 2377777665 34322 23222211 000000
Q ss_pred -Ccceee-eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---e-eccccCceeeec---CCceE
Q 002164 400 -GMRSIN-WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---K-LDLRYGGISWCD---DSLAL 470 (958)
Q Consensus 400 -~~~~~~-~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~-~~~~~~~~~~sp---Dg~~l 470 (958)
.+..+. |||||+.|+.. +...+. ...+.|.+|+++ ..++.+.+. . .......++||| ||++|
T Consensus 254 ~~~~~i~~~spdG~~l~v~-~~~~~~------~~~~~i~v~~~~--~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFAS-SRANKF------ELQGYIAGFKLR--DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp SEEEEEEEECTTSSEEEEE-EEESST------TSCCEEEEEEEC--TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred cccccEEEECCCCCEEEEE-CCCCCC------CCCCeEEEEEEC--CCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 245789 99999988653 221100 012267777752 234554422 1 223456789999 89998
Q ss_pred EEEEeccccceEEEEEcC
Q 002164 471 VYESWYKTRRTRTWVISP 488 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~ 488 (958)
+++...+ +...+|.++.
T Consensus 325 ~v~~~~~-~~v~v~~~~~ 341 (365)
T 1jof_A 325 AITDDQE-GWLEIYRWKD 341 (365)
T ss_dssp EEECSSS-CEEEEEEEET
T ss_pred EEEEcCC-CeEEEEEEch
Confidence 8764432 2356666654
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=136.24 Aligned_cols=214 Identities=14% Similarity=0.085 Sum_probs=127.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCC-cCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
+|.+++...+-++. ...|+||++||.+..... .|.. +....+..|+ ++|.|++ .+.+|+
T Consensus 19 ~~~~l~y~~~G~~~------~~~p~vvllHG~~~~~~~----------~~~~~~~~~~~~~L~-~~~~vi~---~D~~G~ 78 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK------PKRPAIFTYHDVGLNYKS----------CFQPLFRFGDMQEII-QNFVRVH---VDAPGM 78 (286)
T ss_dssp TTEEEEEEEESCCC------TTCCEEEEECCTTCCHHH----------HHHHHHTSHHHHHHH-TTSCEEE---EECTTT
T ss_pred CCeEEEEEeccCCC------CCCCeEEEeCCCCCCchh----------hhhhhhhhchhHHHh-cCCCEEE---ecCCCC
Confidence 78888877664321 125889999996421100 0000 0001233444 4799999 455566
Q ss_pred CCccc--chh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 727 GDEEA--NDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 727 G~~~~--~~~----~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
|.+.. ... ......+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|++++........
T Consensus 79 G~s~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 152 (286)
T 2qmq_A 79 EEGAPVFPLGYQYPSLDQLADMIPCILQYL------NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWM 152 (286)
T ss_dssp STTCCCCCTTCCCCCHHHHHHTHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHH
T ss_pred CCCCCCCCCCCCccCHHHHHHHHHHHHHHh------CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchh
Confidence 55422 222 3566677777777665 23589999999999999999999999999999999864321100
Q ss_pred -C----------C---------ccccc----chhhhc-------------HHHHH----hcCc----ccccCCCCCCEEE
Q 002164 801 -F----------G---------FQNED----RTLWEA-------------TSTYV----EMSP----FMSANKLKKPILL 835 (958)
Q Consensus 801 -~----------~---------~~~~~----~~~~~~-------------~~~~~----~~sp----~~~~~~~~~P~Li 835 (958)
+ . +.... ....+. ...+. .... ...+.++++|+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 232 (286)
T 2qmq_A 153 DWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVML 232 (286)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEE
T ss_pred hhhhhhhccccccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEE
Confidence 0 0 00000 000000 00000 0011 1245678899999
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCC-cEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGA-LCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~-~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
++|++|..+| .. .+.++.... .+++++++++||.+. .++...+.+.+.+||.
T Consensus 233 i~G~~D~~~~---~~----~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 233 VVGDQAPHED---AV----VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp EEETTSTTHH---HH----HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred EecCCCcccc---HH----HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 9999998864 22 233333333 589999999999874 4556777788888874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-11 Score=140.58 Aligned_cols=285 Identities=8% Similarity=0.050 Sum_probs=174.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC----ce-eeccCCCCcccccc-ccceEEec--CCeEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG----KA-RPLFQSPDIYLNAI-FDNFVWVN--NSTLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g----~~-~~lt~~~~~~~~~~-~~~~~wsp--DG~~l~~ 260 (958)
..+...+|||||++|++.. ...|.+|+++++ +. ..+..... . +..++|+| ||++|+.
T Consensus 19 ~~v~~~~~spdg~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~h~~-----~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC----------GKSAFVRCLDDGDSKVPPVVQFTGHGS-----SVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE----------TTEEEEEECCSSCCSSCSEEEECTTTT-----SCEEEEEECSSTTCCEEEE
T ss_pred CceeEEEECCCCCEEEEec----------CCeEEEEECCCCCCccccceEEecCCC-----ceEEEEEECcCCCCCEEEE
Confidence 4688899999999999965 347899999877 44 33332222 2 56899999 9999997
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC------e---eeecCC
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG------T---VKEIGP 330 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g------~---~~~l~~ 330 (958)
.. ....|.++++ +| + ...+..
T Consensus 84 ~~-------------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 114 (615)
T 1pgu_A 84 GD-------------------------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQV 114 (615)
T ss_dssp EE-------------------------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred ec-------------------------------------------------CCCEEEEEeCCCCcccccccccccchhhc
Confidence 62 1133555555 44 2 222322
Q ss_pred C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecC
Q 002164 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
. ..+..++|||||++|+....... ..+.+++|+ .++....+..+ ...+..+.|+||
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~---------~~~~v~~~d-~~~~~~~~~~~-------------~~~v~~~~~~~~ 171 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRD---------NFGVFISWD-SGNSLGEVSGH-------------SQRINACHLKQS 171 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSS---------CSEEEEETT-TCCEEEECCSC-------------SSCEEEEEECSS
T ss_pred ccccEEEEEEeCCCCEEEEeccCCC---------CccEEEEEE-CCCcceeeecC-------------CccEEEEEECCC
Confidence 3 67889999999999998874421 124788887 33333333322 134578999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc---ccCceeeecC-CceEEEEEeccccceEEEE
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---RYGGISWCDD-SLALVYESWYKTRRTRTWV 485 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~---~~~~~~~spD-g~~l~~~~~~~~~~~~l~~ 485 (958)
|+.+++. .+..+.+.+|+. ..+.....+..... .+..+.|+|| |+.|+.....+ .|++
T Consensus 172 ~~~~l~~------------~~~d~~v~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~v 233 (615)
T 1pgu_A 172 RPMRSMT------------VGDDGSVVFYQG--PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----KISC 233 (615)
T ss_dssp SSCEEEE------------EETTTEEEEEET--TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC----CEEE
T ss_pred CCcEEEE------------EeCCCcEEEEeC--CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC----eEEE
Confidence 9865543 134567899995 22222333344444 6778999999 98888775433 3666
Q ss_pred EcCCCCCCCcEEEe-c---cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 486 ISPGSKDVAPRILF-D---RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 486 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
+++..+ +..... . .....+.. +.|+ +|++|+....+ ..|.+||+.+
T Consensus 234 wd~~~~--~~~~~~~~~~~~~~~~v~~------~~~~-~~~~l~~~~~d---------------------~~i~~wd~~~ 283 (615)
T 1pgu_A 234 FDGKSG--EFLKYIEDDQEPVQGGIFA------LSWL-DSQKFATVGAD---------------------ATIRVWDVTT 283 (615)
T ss_dssp EETTTC--CEEEECCBTTBCCCSCEEE------EEES-SSSEEEEEETT---------------------SEEEEEETTT
T ss_pred EECCCC--CEeEEecccccccCCceEE------EEEc-CCCEEEEEcCC---------------------CcEEEEECCC
Confidence 666654 223333 2 23333333 7889 99988877521 2599999998
Q ss_pred CceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 562 GSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 562 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
++.................. ..++ +++.++.... ...++++++.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~l~~~~~----~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVG-------VVAT-GNGRIISLSL----DGTLNFYELGHDE 330 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEE-------EEEE-ETTEEEEEET----TSCEEEEETTEEE
T ss_pred CcEEEEEcCCCCcccCceeE-------EEeC-CCCeEEEEEC----CCCEEEEECCCCc
Confidence 87665554431100011111 2233 6666654443 2457888876654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=148.21 Aligned_cols=233 Identities=9% Similarity=0.040 Sum_probs=137.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC-
Q 002164 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD- 187 (958)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~- 187 (958)
+.+..++|||||++||..+.+ +.+.+|+.. +....+. ...
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d---------------------------------g~V~iwd~~-----~~l~~l~-~~~~ 126 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN---------------------------------GNVSVFKDN-----KMLTNLD-SKGN 126 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT---------------------------------SCEEEEETT-----EEEEECC-CSSC
T ss_pred CcEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEeCC-----ceeeecc-CCCc
Confidence 456678888888888877765 578899852 1111121 110
Q ss_pred --CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce--------eeccCCCCccccccccceEEecCCeE
Q 002164 188 --GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 188 --~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
...+...+|||||+.||.... ...|.+|++.++.. ..+.....+ ....+..++||||| .
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~---------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-L 195 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNE---------DGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-L 195 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEET---------TSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE-E
T ss_pred cccccEEEEEEcCCCCEEEEEcC---------CCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc-E
Confidence 114788999999999999653 66788889888753 222111110 11127799999999 4
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee----eecC-CC
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----KEIG-PP 331 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~----~~l~-~~ 331 (958)
++.. ....++++++ ++.. +.+. ..
T Consensus 196 aass--------------------------------------------------~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 196 VAAL--------------------------------------------------SNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp EEEE--------------------------------------------------TTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred EEEe--------------------------------------------------CCCeEEEEECCCCccccceeeecccc
Confidence 4433 1234667777 4442 2342 23
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeee--ec
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW--RS 408 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~--sp 408 (958)
..+..++|| |+.|+.+.. +.|.+|+++++....+... ....+.++.| ||
T Consensus 226 ~~~V~svaFs--g~~LASa~~--------------~tIkLWd~~~~~~~~~~~g------------h~~~V~~va~~~s~ 277 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCP--------------GYVHKIDLKNYSISSLKTG------------SLENFHIIPLNHEK 277 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECS--------------SEEEEEETTTTEEEEEECS------------CCSCCCEEEETTCS
T ss_pred cCcEEEEEEE--CCEEEEEeC--------------CeEEEEECCCCeEEEEEcC------------CCceEEEEEeeeCC
Confidence 678899999 688887752 3899999998877544321 1134567888 88
Q ss_pred CCCCceEEEEeccCC------------CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEe
Q 002164 409 DKPSTLYWAETQDGG------------DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 409 DG~~l~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
||+.|+... .+|. +..........+++|+. .++....+.. ...+.+++|||||+.|+....
T Consensus 278 d~~~La~a~--edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~---~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 278 ESTILLMSN--KTSYKVLLEDELHVTADNIIAPYLEKKFKKWST---IWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SCEEEEECS--SCEEEEEESSSEEEECCCSSHHHHHHHHHHTTT---TTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCCEEEEEc--CCCCEEEeeccEEECCCceEEEEcCCEEEEEEC---CCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 887666531 1111 00000011223444442 3333332222 444677899999999887653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-11 Score=135.17 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=165.9
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-ce---eeccCCCCccccccccceEEec-CCeEEEEEecCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KA---RPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-~~---~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (958)
....+++|+...+++. ..+...|.+|++... +. ........ ..+..++|+| |++.|+...
T Consensus 37 ~~~~~~~~~~~~~~~~--------~~~~g~i~v~~~~~~~~~~~~~~~~~~h~----~~V~~~~~~p~~~~~l~s~s--- 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICE--------ASGGGAFLVLPLGKTGRVDKNVPLVCGHT----APVLDIAWCPHNDNVIASGS--- 101 (402)
T ss_dssp SCSEEECSSEEEEEBC--------CSSSCCEEEEETTCCEECCTTCCCBCCCS----SCEEEEEECTTCTTEEEEEE---
T ss_pred CCcEEECCCeEEEEEE--------EcCCCEEEEEECccCCCCCCCCceEecCC----CCEEEEEeCCCCCCEEEEEe---
Confidence 3457788766544442 234668888887543 21 11111112 2277999999 888888762
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--------eeecCCC-cccc
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VKEIGPP-AVYT 335 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--------~~~l~~~-~~~~ 335 (958)
....|.++++ ++. ...+... ..+.
T Consensus 102 ----------------------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 102 ----------------------------------------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp ----------------------------------------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred ----------------------------------------------CCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 1234666676 442 3334434 6788
Q ss_pred ccccCCCCc-EEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 336 SLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 336 ~~~~SpDGk-~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
.++|+|||+ .|+..+ . ++.|.+||+.+++.. .+.. . .....+..+.|+|||+.|
T Consensus 136 ~~~~~p~~~~~l~s~~-~------------dg~i~iwd~~~~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAG-C------------DNVILVWDVGTGAAVLTLGP-D----------VHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp EEEECSSBTTEEEEEE-T------------TSCEEEEETTTTEEEEEECT-T----------TCCSCEEEEEECTTSSCE
T ss_pred EEEECcCCCCEEEEEc-C------------CCEEEEEECCCCCccEEEec-C----------CCCCceEEEEECCCCCEE
Confidence 999999996 555444 2 348999999866543 3310 0 111345789999999988
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-Eeecc-ccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.. +..+.|++||+ ..+.....+ ..... .+..+.|+|||+.|+...... ....|.++++...
T Consensus 192 ~~~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 192 CTS-------------CRDKRVRVIEP--RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-SERQVALWDTKHL 255 (402)
T ss_dssp EEE-------------ETTSEEEEEET--TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-CCEEEEEEETTBC
T ss_pred EEE-------------ecCCcEEEEeC--CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-CCceEEEEcCccc
Confidence 773 44668999996 233223333 22222 257789999998777663211 1245777777764
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc--eEEEec
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS--KERIWE 569 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~--~~~l~~ 569 (958)
..............+.. +.|+|||+.|+..... ...|.+||+.+++ ...+..
T Consensus 256 ~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~g~~--------------------dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLL------PFFDPDTNIVYLCGKG--------------------DSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp SSCSEEEECCCCSSCEE------EEEETTTTEEEEEETT--------------------CSCEEEEEECSSTTCEEEEEE
T ss_pred cCCceEEeccCCCceeE------EEEcCCCCEEEEEEcC--------------------CCeEEEEEecCCCcceEeecc
Confidence 22112221111122222 7899999988765411 1258999998877 444432
Q ss_pred CCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEe
Q 002164 570 SDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (958)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~L 624 (958)
.... ......+|+||+..++. ....+.++++.+++.+.+
T Consensus 310 ~~~~----------~~v~~~~~sp~~~~~~s------~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 310 FSSK----------ESQRGMGYMPKRGLEVN------KCEIARFYKLHERKCEPI 348 (402)
T ss_dssp ECCS----------SCCSEEEECCGGGSCGG------GTEEEEEEEEETTEEEEE
T ss_pred cccC----------CcccceEEeccccccee------cceeEEEEEcCCCcEEEE
Confidence 2110 11123567787765431 112455666666655544
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-13 Score=156.20 Aligned_cols=211 Identities=17% Similarity=0.061 Sum_probs=135.4
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC-cEEEEcCCC-CCCCCCC
Q 002164 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGEGD 728 (958)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~vl~~~~~-~~~G~G~ 728 (958)
-+...+|.|+.. . .++|+||++|||++..+.... +. .....|+++| ++|+.++|+ +..|++.
T Consensus 82 cL~l~v~~P~~~--~--~~~PviV~iHGGg~~~g~~~~--------~~----~~~~~la~~g~~vvv~~nYRlg~~Gf~~ 145 (489)
T 1qe3_A 82 CLYVNVFAPDTP--S--QNLPVMVWIHGGAFYLGAGSE--------PL----YDGSKLAAQGEVIVVTLNYRLGPFGFLH 145 (489)
T ss_dssp CCEEEEEEECSS--C--CSEEEEEEECCSTTTSCCTTS--------GG----GCCHHHHHHHTCEEEEECCCCHHHHSCC
T ss_pred CCEEEEEeCCCC--C--CCCCEEEEECCCccccCCCCC--------cc----cCHHHHHhcCCEEEEecCccCcccccCc
Confidence 356678889752 1 238999999999765433211 10 1134667765 999998887 3334433
Q ss_pred ccc--chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCCCCCCCC
Q 002164 729 EEA--NDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 729 ~~~--~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~~~~~~~ 801 (958)
... ........+.|+.++++|+.++- .+|++||+|+|+|+||++++.++... +++|+++|+.+|..++.....
T Consensus 146 ~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~ 225 (489)
T 1qe3_A 146 LSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQ 225 (489)
T ss_dssp CTTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHH
Confidence 211 11223456789999999998862 36999999999999999999887753 578999999999763211000
Q ss_pred C------cccccchhhhcHHHH---------HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 802 G------FQNEDRTLWEATSTY---------VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 802 ~------~~~~~~~~~~~~~~~---------~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
. +....+-..+..+.+ ...+++........|.+++++..|..+. +.+..+++++.+..++++.
T Consensus 226 ~~~~~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~--~~~~~~~~~~~~~~~vp~~ 303 (489)
T 1qe3_A 226 AASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTL--PEEPEKSIAEGAASGIPLL 303 (489)
T ss_dssp HHHHHHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTB--CSCHHHHHHTTTTTTCCEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeec--CcCHHHHHhcCCCCCCCEE
Confidence 0 000000000011111 1111111111234567889999999987 8899999998888899999
Q ss_pred EEEeCCCCccCCC
Q 002164 867 LVILPFESHGYAA 879 (958)
Q Consensus 867 ~~~~p~~~H~~~~ 879 (958)
+-..++++|.+..
T Consensus 304 ~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 304 IGTTRDEGYLFFT 316 (489)
T ss_dssp EEEETTGGGGTCC
T ss_pred EeeecchhHhhcc
Confidence 9999999998753
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=143.28 Aligned_cols=192 Identities=14% Similarity=-0.011 Sum_probs=111.8
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVE 748 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~ 748 (958)
|.||++||..... ..| ...+..|++ ||.|++ .+.+|+|.+.... .......+|+.+.++
T Consensus 52 ~~lvllHG~~~~~-----------~~~----~~l~~~L~~-~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~~~~~l~ 112 (280)
T 3qmv_A 52 LRLVCFPYAGGTV-----------SAF----RGWQERLGD-EVAVVP---VQLPGRGLRLRERPYDTMEPLAEAVADALE 112 (280)
T ss_dssp EEEEEECCTTCCG-----------GGG----TTHHHHHCT-TEEEEE---CCCTTSGGGTTSCCCCSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCh-----------HHH----HHHHHhcCC-CceEEE---EeCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8899999964211 111 133445555 999999 6667787764322 224555666655554
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee----EEEEeccCCCCCCCCCCccc-cc----------------
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC----CGIARSGAYNRTLTPFGFQN-ED---------------- 807 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~----a~v~~~~~~~~~~~~~~~~~-~~---------------- 807 (958)
.+. ..+++.|+||||||.+|+.+|.+.|+++. .++..+.............. ..
T Consensus 113 ~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (280)
T 3qmv_A 113 EHR-----LTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDA 187 (280)
T ss_dssp HTT-----CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC--
T ss_pred HhC-----CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChh
Confidence 431 33689999999999999999999877665 55555432110000000000 00
Q ss_pred --------c----hhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002164 808 --------R----TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (958)
Q Consensus 808 --------~----~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H 875 (958)
. ...........+.+ ..+.++++|+|+++|++|..++ +....++.+.+. ..++++++++ ||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~g-gH 260 (280)
T 3qmv_A 188 DTLGAAYFDRRLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIAT--PEMVEAWRPYTT---GSFLRRHLPG-NH 260 (280)
T ss_dssp -------CCTTHHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSC--HHHHHTTGGGBS---SCEEEEEEEE-ET
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcC--hHHHHHHHHhcC---CceEEEEecC-CC
Confidence 0 00000011111111 2246788999999999999998 777766655442 3478888886 99
Q ss_pred cCCC-cccHHHHHHHHHHH
Q 002164 876 GYAA-RESIMHVLWETDRW 893 (958)
Q Consensus 876 ~~~~-~~~~~~~~~~i~~f 893 (958)
.... .++...+.+.|.+|
T Consensus 261 ~~~~~~~~~~~~~~~i~~~ 279 (280)
T 3qmv_A 261 FFLNGGPSRDRLLAHLGTE 279 (280)
T ss_dssp TGGGSSHHHHHHHHHHHTT
T ss_pred eEEcCchhHHHHHHHHHhh
Confidence 8643 24455555555544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-11 Score=134.21 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=154.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||....+ +.|.+|++.. ++....+.+.. +..
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d---------------------------------g~i~iw~~~~-~~~~~~~~~~~--h~~ 56 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG-ETHKLIDTLTG--HEG 56 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECC--CSS
T ss_pred cEEEEEEcCCCCEEEEEECC---------------------------------CcEEEEecCC-CcceeeeEecC--CCC
Confidence 56788999999999988765 4789999853 11112233433 334
Q ss_pred cccceeecCC--CCeEEEEEeeccccCCCCCceEEEEEcCCCce--eeccCCCCccccccccceEEecC--CeEEEEEec
Q 002164 190 KLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~ 263 (958)
.+..+.|+|+ |+.|+.... ...|.+|++.+++. ......... .+..++|+|+ |+.|++..
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~- 122 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSY---------DGKVLIWKEENGRWSQIAVHAVHSA----SVNSVQWAPHEYGPLLLVAS- 122 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEET---------TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE-
T ss_pred cEEEEEeCCCCCCCEEEEecc---------CCEEEEEEcCCCceeEeeeecCCCc----ceEEEEeCCCCCCCEEEEec-
Confidence 7889999988 888887552 45788888888752 222221222 2778999999 88888762
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC---eeeecCCC-ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~~~~ 338 (958)
....|.++++ ++ ....+... ..+..+.
T Consensus 123 ------------------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 123 ------------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp ------------------------------------------------TTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred ------------------------------------------------CCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 2245777777 44 12233333 6778899
Q ss_pred cCC-------------CCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcce
Q 002164 339 PSP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 339 ~Sp-------------DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
|+| |++.|+..+.+ +.|.+||+.++. ...+.... .....+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~----------~h~~~v~~ 211 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLE----------GHSDWVRD 211 (379)
T ss_dssp ECCCC----------CTTCEEEEEETT-------------SCEEEEEEETTTTEEEEEEEEC----------CCSSCEEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCC-------------CeEEEEEecCCCcceeeEEEEe----------cccCcEeE
Confidence 999 79988887743 489999997432 11211111 11134578
Q ss_pred eeeecC---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC--ceEEE---eeccccCceeeecCCceEEEEEe
Q 002164 404 INWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--PEILH---KLDLRYGGISWCDDSLALVYESW 475 (958)
Q Consensus 404 ~~~spD---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~--~~~l~---~~~~~~~~~~~spDg~~l~~~~~ 475 (958)
+.|+|| |+.++.. +..+.|.+|++ ..+.. ...+. .....+..+.|+|||+.|+....
T Consensus 212 ~~~sp~~~~~~~l~s~-------------~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASV-------------SQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEECCCCSSSEEEEEE-------------ETTSCEEEEEE--SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred EEECCCCCCCCeEEEE-------------eCCCEEEEEeC--CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 999999 6666552 44567888886 12221 22221 13445677899999999988766
Q ss_pred ccccceEEEEEcCCC
Q 002164 476 YKTRRTRTWVISPGS 490 (958)
Q Consensus 476 ~~~~~~~l~~~~~~~ 490 (958)
.+. .++|.++..+
T Consensus 277 dg~--i~iw~~~~~~ 289 (379)
T 3jrp_A 277 DNK--VTLWKENLEG 289 (379)
T ss_dssp SSS--EEEEEEEETT
T ss_pred CCc--EEEEeCCCCC
Confidence 433 6777776443
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-12 Score=138.17 Aligned_cols=209 Identities=11% Similarity=-0.009 Sum_probs=123.9
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|..++.... + .++.|.||++||.+..... |.. ....|+ ..|.|++ .|.+|+
T Consensus 28 ~~g~~l~y~~~---G-----~g~~~~vvllHG~~~~~~~-----------w~~----~~~~L~-~~~~via---~Dl~Gh 80 (318)
T 2psd_A 28 VLDSFINYYDS---E-----KHAENAVIFLHGNATSSYL-----------WRH----VVPHIE-PVARCII---PDLIGM 80 (318)
T ss_dssp ETTEEEEEEEC---C-----SCTTSEEEEECCTTCCGGG-----------GTT----TGGGTT-TTSEEEE---ECCTTS
T ss_pred eCCeEEEEEEc---C-----CCCCCeEEEECCCCCcHHH-----------HHH----HHHHhh-hcCeEEE---EeCCCC
Confidence 37887765442 1 1224689999997532211 111 122344 4478999 667788
Q ss_pred CCcccch--h-hHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC--CCC
Q 002164 727 GDEEAND--R-FVEQLVACAEAAVEEVVRRGVAHP-SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTP 800 (958)
Q Consensus 727 G~~~~~~--~-~~~~~~~D~~~av~~l~~~~~~d~-~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~~ 800 (958)
|.+.... . ......+|+.+.++. .+. +++.|+||||||.+++.+|.++|++++++|++++..... ...
T Consensus 81 G~S~~~~~~~~~~~~~a~dl~~ll~~------l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~ 154 (318)
T 2psd_A 81 GKSGKSGNGSYRLLDHYKYLTAWFEL------LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154 (318)
T ss_dssp TTCCCCTTSCCSHHHHHHHHHHHHTT------SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHh------cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhh
Confidence 8875431 1 234445555554433 233 689999999999999999999999999999976432110 000
Q ss_pred CCc--------ccc--------c-------------chhhh-cHHHHH-----------------hcCc-----------
Q 002164 801 FGF--------QNE--------D-------------RTLWE-ATSTYV-----------------EMSP----------- 822 (958)
Q Consensus 801 ~~~--------~~~--------~-------------~~~~~-~~~~~~-----------------~~sp----------- 822 (958)
+.. ... . ..... ....|. ..-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
T 2psd_A 155 WPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQ 234 (318)
T ss_dssp SCSCHHHHHHHHSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHH
T ss_pred hhhHHHHHHHHhcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHH
Confidence 000 000 0 00000 000000 0000
Q ss_pred -----ccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 823 -----FMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 823 -----~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
...+.++ ++|+|+++|++| .++ + .+.++.+.+. ..+++++ ++||... .+....+.+.|.+||.+
T Consensus 235 ~~~~~~~~l~~i~~~P~Lvi~G~~D-~~~--~-~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~ 304 (318)
T 2psd_A 235 IVRNYNAYLRASDDLPKLFIESDPG-FFS--N-AIVEGAKKFP----NTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVER 304 (318)
T ss_dssp HHHHHHHHHHTCTTSCEEEEEEEEC-SSH--H-HHHHHHTTSS----SEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCeEEEEeccc-cCc--H-HHHHHHHhCC----CcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHH
Confidence 0123456 899999999999 876 5 5555554432 3577777 6799764 56778899999999987
Q ss_pred hh
Q 002164 897 YC 898 (958)
Q Consensus 897 ~l 898 (958)
..
T Consensus 305 ~~ 306 (318)
T 2psd_A 305 VL 306 (318)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-11 Score=137.54 Aligned_cols=248 Identities=9% Similarity=0.031 Sum_probs=144.5
Q ss_pred CCCCCceecCCC---------CEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCc-
Q 002164 109 PPLPALSFSPQR---------DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ- 178 (958)
Q Consensus 109 ~~~~~~~~SPDG---------~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~- 178 (958)
..+..++|+|++ ++||........ ...+++.......+.++.|.||++.+ +....
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------~~~~~~~~~laS~s~D~tI~iWd~~~-~~~~~~ 198 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------EPLNEHLEMFDKEKHSSCIQIFKMNT-STLHCV 198 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------CEEEEEEEEET-TTCCEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccC--------------CccchhhhhhccCCCCceEEEEEccC-CCCCce
Confidence 357889999998 788877653110 00122222233344557899999854 21111
Q ss_pred -eeeeccCCCCCcccceeecCC------CCeEEEEEeeccccCCCCCceEEEEEcCCCcee------------eccCCCC
Q 002164 179 -EIEIQGFPDGAKLNFVTWSQD------GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR------------PLFQSPD 239 (958)
Q Consensus 179 -~~~lt~~~~~~~~~~~~wSPD------G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~------------~lt~~~~ 239 (958)
...+.. ....+...+|+|+ |+.||.... ...|.+|++.+++.. .+.. ..
T Consensus 199 ~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~---------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~ 266 (524)
T 2j04_B 199 KVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQ---------EGTINFLEIIDNATDVHVFKMCEKPSLTLSL-AD 266 (524)
T ss_dssp EEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEET---------TSCEEEEECCCCSSSSSEEECCCSCSEEECC-TT
T ss_pred EEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEec---------CCeEEEEEcCCCccccccceeecCceEEEEc-CC
Confidence 112332 2245888999997 567776542 456777888765421 1111 11
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
..+..++|+|++ .|+... ..+.|.++
T Consensus 267 ----~~v~sv~~s~~~-~lasgs-------------------------------------------------~DgtV~lW 292 (524)
T 2j04_B 267 ----SLITTFDFLSPT-TVVCGF-------------------------------------------------KNGFVAEF 292 (524)
T ss_dssp ----TCEEEEEESSSS-EEEEEE-------------------------------------------------TTSEEEEE
T ss_pred ----CCEEEEEecCCC-eEEEEe-------------------------------------------------CCCEEEEE
Confidence 126789999876 566541 23457778
Q ss_pred Ec-CCe-e-eecCCC-cccccc--ccCCCC-cEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCc
Q 002164 320 SL-DGT-V-KEIGPP-AVYTSL--DPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIP 391 (958)
Q Consensus 320 ~~-~g~-~-~~l~~~-~~~~~~--~~SpDG-k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p 391 (958)
|+ ++. . ..+... ..+.++ .|+||| +.|+..+. ++.+.+||+..... +.+......
T Consensus 293 D~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-------------D~tvklWD~~~~~~~~~~~~~~~~---- 355 (524)
T 2j04_B 293 DLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-------------DGYFYIFNPKDIATTKTTVSRFRG---- 355 (524)
T ss_dssp ETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-------------TSEEEEECGGGHHHHCEEEEECSC----
T ss_pred ECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-------------CCeEEEEECCCCCccccccccccc----
Confidence 88 553 2 223333 667777 689999 66666653 34899999975432 222111000
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEE
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~ 471 (958)
..+..++|+|||+.++.. +..+.|.+|++ ..+.....+..+...+..++|||||+.|+
T Consensus 356 -------~~v~~v~fsp~~~~l~s~-------------~~d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 356 -------SNLVPVVYCPQIYSYIYS-------------DGASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp -------CSCCCEEEETTTTEEEEE-------------CSSSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred -------CcccceEeCCCcCeEEEe-------------CCCCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEE
Confidence 124578999999986652 34557889996 34445567777788889999999999988
Q ss_pred EEEec
Q 002164 472 YESWY 476 (958)
Q Consensus 472 ~~~~~ 476 (958)
..+.+
T Consensus 414 Sgs~D 418 (524)
T 2j04_B 414 AGSAD 418 (524)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 76643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-11 Score=132.05 Aligned_cols=241 Identities=11% Similarity=0.041 Sum_probs=143.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||....+ .+.+|++.. ......... .
T Consensus 21 ~V~~v~fs~dg~~la~g~~~----------------------------------~~~iw~~~~----~~~~~~~~~---~ 59 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLK----------------------------------SFEIYNVHP----VAHIMSQEM---R 59 (355)
T ss_dssp CCCEEEECTTSSEEEEECSS----------------------------------EEEEEEETT----EEEEEEEEC---S
T ss_pred ceEEEEECCCCCEEEEEcCC----------------------------------EEEEEecCC----cceeeeeec---C
Confidence 68899999999999977653 567888743 222211111 1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+++++.++++.. +...|.+||..+++.......... +..+.|++++. ++.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~--------~d~~v~iWd~~~~~~~~~~~~~~~-----v~~v~~~~~~~--~~~-------- 116 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTG--------VKEVVHIWDDVKKQDVSRIKVDAP-----VKDLFLSREFI--VVS-------- 116 (355)
T ss_dssp CCCEEEECTTSSEEEEECS--------STTEEEEEETTTTEEEEEEECSSC-----EEEEEECSSEE--EEE--------
T ss_pred CeEEEEEcCCCCEEEEEEC--------CccEEEEEECCCCcEEEEEECCCc-----eEEEEEcCCEE--EEE--------
Confidence 3677889999999887642 235899999988876544333332 66788887753 322
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-e-eeecCCCccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-VKEIGPPAVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~-~~~l~~~~~~~~~~~SpDGk~l 346 (958)
....++++++ ++ + ...+. ......++++ +.+
T Consensus 117 ------------------------------------------~~~~i~i~d~~~~~~~~~~~~--~~~~~~~~s~--~~l 150 (355)
T 3vu4_A 117 ------------------------------------------YGDVISVFKFGNPWKRITDDI--RFGGVCEFSN--GLL 150 (355)
T ss_dssp ------------------------------------------ETTEEEEEESSTTCCBSSCCE--EEEEEEEEET--TEE
T ss_pred ------------------------------------------EcCEEEEEECCCCceeeEEec--cCCceEEEEc--cEE
Confidence 1234777887 54 2 22221 1223345666 777
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC--ccccCc--ccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP--LAEDIP--IAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~--~~~~~p--~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
++.+.. .++.|.+||+.++......... .....| ..+.++...+..++|+|||+.|+..
T Consensus 151 a~~sg~-----------~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~------ 213 (355)
T 3vu4_A 151 VYSNEF-----------NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC------ 213 (355)
T ss_dssp EEEESS-----------CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE------
T ss_pred EEeCCC-----------cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE------
Confidence 776311 2458999999864310000000 000000 1112233556789999999987763
Q ss_pred CCcccccccCCe-EEEEeCCCCCCCCceEEE-e-eccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 423 GDAKVEVTPRDI-IYTQQAEPVQGEGPEILH-K-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 423 ~~~~~~~~~~~~-l~~~~~~~~~g~~~~~l~-~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+..+. |.+||+ .++.....+. . +...+..++|||||+.|+..+.++. .+||.+..
T Consensus 214 -------s~d~~~v~iwd~--~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~--v~iw~~~~ 271 (355)
T 3vu4_A 214 -------SQDGTIIRVFKT--EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT--LHVFEIFN 271 (355)
T ss_dssp -------ETTCSEEEEEET--TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE--EEEEESSC
T ss_pred -------eCCCCEEEEEEC--CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE--EEEEEccC
Confidence 44565 899996 3344444554 2 5667888999999999988765543 55665543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-11 Score=131.88 Aligned_cols=245 Identities=13% Similarity=0.189 Sum_probs=151.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.+|++.. +.......+.++ ..
T Consensus 15 ~V~~v~~s~~g~~lasgs~D---------------------------------~~v~lwd~~~-~~~~~~~~l~gH--~~ 58 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSD---------------------------------RSVKIFDVRN-GGQILIADLRGH--EG 58 (316)
T ss_dssp CEEEEEECGGGCEEEEEETT---------------------------------TEEEEEEEET-TEEEEEEEEECC--SS
T ss_pred eEEEeeEcCCCCEEEEEeCC---------------------------------CeEEEEEecC-CCcEEEEEEcCC--Cc
Confidence 56788999999999998875 4789999854 100012334443 35
Q ss_pred cccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc--CCCCccccccccceEEecC--CeEEEEEec
Q 002164 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNN--STLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt--~~~~~~~~~~~~~~~wspD--G~~l~~~~~ 263 (958)
.+...+|+| +|+.|+.... ...|.+|++.+++...+. ..... .+..++|+|| |..|+...
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~---------D~~v~iWd~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~g~~lasgs- 124 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSY---------DRKVIIWREENGTWEKSHEHAGHDS----SVNSVCWAPHDYGLILACGS- 124 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEET---------TSCEEEECCSSSCCCEEEEECCCSS----CCCEEEECCTTTCSCEEEEC-
T ss_pred cEEEEEeCCCCCCCEEEEEEC---------CCEEEEEECCCCcceEEEEccCCCC----ceEEEEECCCCCCcEEEEEc-
Confidence 788999987 4888887552 557888888876432221 11221 2778999998 77777661
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-ee---eecCCC-cccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TV---KEIGPP-AVYTSL 337 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~---~~l~~~-~~~~~~ 337 (958)
....|.++++ ++ .. ..+... ..+..+
T Consensus 125 ------------------------------------------------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 125 ------------------------------------------------SDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp ------------------------------------------------SSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred ------------------------------------------------CCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 1233555666 33 21 112222 567788
Q ss_pred ccCCCC-----------------cEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCccccccccc
Q 002164 338 DPSPDE-----------------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 338 ~~SpDG-----------------k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
.|+|++ ++|+..+ .++.|.+||+.++ ..+.+.... ++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-------------~D~~v~lWd~~~~~~~~~~~~l~----------~h~~ 213 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGG-------------CDNLIKLWKEEEDGQWKEEQKLE----------AHSD 213 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCB-------------TTSBCCEEEECTTSCEEEEECCB----------CCSS
T ss_pred EEccccCCccccccccccCccccceEEEec-------------CCCeEEEEEeCCCCccceeeecc----------cCCC
Confidence 999983 4554433 2458999999743 222222221 1224
Q ss_pred CcceeeeecCC----CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC--CceEEEeeccccCceeeecCCceEEEE
Q 002164 400 GMRSINWRSDK----PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 400 ~~~~~~~spDG----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
.+..++|+||+ +.|+.. +..+.|.+|+++....+ ..+.+......+..++|+|||+.|+..
T Consensus 214 ~V~~v~~sp~~~~~~~~las~-------------s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASC-------------SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEE-------------ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred ceEEEEecCCCCCCCceEEEE-------------cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 56789999997 444431 44667889986221111 123455556677889999999999887
Q ss_pred EeccccceEEEEEcCCC
Q 002164 474 SWYKTRRTRTWVISPGS 490 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~ 490 (958)
..++. .+||..+..+
T Consensus 281 ~~D~~--v~lw~~~~~g 295 (316)
T 3bg1_A 281 GGDNK--VTLWKESVDG 295 (316)
T ss_dssp ESSSC--EEEEEECTTS
T ss_pred cCCCe--EEEEEECCCC
Confidence 65544 7788776543
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-12 Score=133.30 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=112.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (958)
.|.||++||...... .| ......|+++||.|++ .|.+|+|.+..... .+....+|+.+
T Consensus 16 ~~~vvllHG~~~~~~-----------~w----~~~~~~L~~~~~~vi~---~Dl~GhG~S~~~~~~~~~~~a~~l~~--- 74 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA-----------DW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEAVEMIEQ--- 74 (264)
T ss_dssp BCEEEEECCTTCCGG-----------GG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHHHHHHHH---
T ss_pred CCcEEEEcCCCCCHH-----------HH----HHHHHHhcccCceEEE---ecCCCCCCCCCCCccCHHHHHHHHHH---
Confidence 478999999642211 11 1344556658999999 66678888754221 12233333333
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHH---HHHhCCCceeEEEEeccCCCCCCCC-----------CC--cc-c---c--
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTAN---LLAHAPHLFCCGIARSGAYNRTLTP-----------FG--FQ-N---E-- 806 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~---~a~~~p~~~~a~v~~~~~~~~~~~~-----------~~--~~-~---~-- 806 (958)
+.+.-.++..++.|+||||||.+++. +|.++|++++++|+.++........ +. +. . .
T Consensus 75 -~l~~l~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T 1r3d_A 75 -TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVL 153 (264)
T ss_dssp -HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred -HHHHhCcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHH
Confidence 33332232224999999999999999 7788999999999987643211000 00 00 0 0
Q ss_pred ----cchhhh-----------------cH----HHHHh------cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 807 ----DRTLWE-----------------AT----STYVE------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 807 ----~~~~~~-----------------~~----~~~~~------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
....+. .. ..+.. .+....+.++++|+|+++|++|..++ ++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-------~~~ 226 (264)
T 1r3d_A 154 SDWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLA 226 (264)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHH
T ss_pred HHHhhhhhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-------HHH
Confidence 000000 00 00000 01112345788999999999996431 233
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+.+. .+++++|++||... .+....+.+.+.+|+.++
T Consensus 227 ~~~~-----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 262 (264)
T 1r3d_A 227 ESSG-----LSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp HHHC-----SEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHhC-----CcEEEcCCCCCchh-hcCHHHHHHHHHHHHHHh
Confidence 3331 46889999999873 456778889999999875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-11 Score=130.40 Aligned_cols=266 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred CCCCceecCC---CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccC
Q 002164 110 PLPALSFSPQ---RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGF 185 (958)
Q Consensus 110 ~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~ 185 (958)
.+..++|||| |++|+....+ +.|.+|++...+ ... ..+..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~d---------------------------------g~i~iw~~~~~~--~~~~~~~~~- 84 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWA---------------------------------NDVRCWEVQDSG--QTIPKAQQM- 84 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETT---------------------------------SEEEEEEECTTS--CEEEEEEEE-
T ss_pred ceEEEEEcCCCCCceEEEEECCC---------------------------------CcEEEEEcCCCC--ceeEEEecc-
Confidence 5778999999 6888887765 478999996422 222 34443
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE--ecCCeEEEEEec
Q 002164 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIP 263 (958)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~~ 263 (958)
+...+....|+|||++|+... ....|.+|++.+++...+...... +..++| +||++.|+...
T Consensus 85 -h~~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~~~~- 148 (368)
T 3mmy_A 85 -HTGPVLDVCWSDDGSKVFTAS---------CDKTAKMWDLSSNQAIQIAQHDAP-----VKTIHWIKAPNYSCVMTGS- 148 (368)
T ss_dssp -CSSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEEEECSSCEEEEEEE-
T ss_pred -ccCCEEEEEECcCCCEEEEEc---------CCCcEEEEEcCCCCceeeccccCc-----eEEEEEEeCCCCCEEEEcc-
Confidence 235789999999999999755 256899999999887776544432 778999 89999888761
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCCccccccccCC
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSP 341 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~Sp 341 (958)
....|.++++ +++. ..+..........++
T Consensus 149 ------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~- 179 (368)
T 3mmy_A 149 ------------------------------------------------WDKTLKFWDTRSSNPMMVLQLPERCYCADVI- 179 (368)
T ss_dssp ------------------------------------------------TTSEEEEECSSCSSCSEEEECSSCEEEEEEE-
T ss_pred ------------------------------------------------CCCcEEEEECCCCcEEEEEecCCCceEEEec-
Confidence 2245778887 6643 233222333344444
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCC----ceEE
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPS----TLYW 416 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~----l~~~ 416 (958)
+..++..... +.+.+|++........ ...... .....+.+.+++.. ++..
T Consensus 180 -~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 180 -YPMAVVATAE-------------RGLIVYQLENQPSEFRRIESPLK-----------HQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp -TTEEEEEEGG-------------GCEEEEECSSSCEEEEECCCSCS-----------SCEEEEEEEECTTSCEEEEEEE
T ss_pred -CCeeEEEeCC-------------CcEEEEEeccccchhhhcccccc-----------CCCceEEEcccCCCCCCeEEEe
Confidence 3455555432 3788999885432211 111100 12233445554443 3331
Q ss_pred EEeccCCCcccccccCCeEEEEeCCCCCCCC----ceEEEeecc------------ccCceeeecCCceEEEEEeccccc
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDL------------RYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~------------~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
+..+.+.+|+. .... ...+..... .+..++|+|||+.|+....++.
T Consensus 235 -------------~~dg~i~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-- 296 (368)
T 3mmy_A 235 -------------SIEGRVAIHYI---NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-- 296 (368)
T ss_dssp -------------ETTSEEEEEES---SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC--
T ss_pred -------------cCCCcEEEEec---CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe--
Confidence 44567888886 3221 223322222 4778999999999887764432
Q ss_pred eEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 481 TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 481 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
|.++++.++ +...........+.. ++|+|||++|+....
T Consensus 297 --i~iwd~~~~--~~~~~~~~~~~~v~~------~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 297 --FSFWDKDAR--TKLKTSEQLDQPISA------CCFNHNGNIFAYASS 335 (368)
T ss_dssp --EEEEETTTT--EEEEECCCCSSCEEE------EEECTTSSCEEEEEC
T ss_pred --EEEEECCCC--cEEEEecCCCCCceE------EEECCCCCeEEEEec
Confidence 555566653 333333333333333 889999999998873
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-10 Score=124.11 Aligned_cols=273 Identities=13% Similarity=0.062 Sum_probs=168.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....| |||++|+... ....|.+|++.+++........... +..++|+|||+.|+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~---------~dg~v~vw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~------ 78 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVS---------RDGTVRLWSKDDQWLGTVVYTGQGF----LNSVCYDSEKELLLFGG------ 78 (313)
T ss_dssp SCEEEEEE-EETTEEEEEE---------TTSEEEEEEESSSEEEEEEEECSSC----EEEEEEETTTTEEEEEE------
T ss_pred CCcEEEEe-cCCCEEEEEE---------cCCcEEEEECCCCEEEEEeecCCcc----EEEEEECCCCCEEEEec------
Confidence 46888899 9999988755 2568888998887765544433322 77899999999999772
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC---e-eeecCCC-ccccccccCCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---T-VKEIGPP-AVYTSLDPSPD 342 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g---~-~~~l~~~-~~~~~~~~SpD 342 (958)
....+.++++ +. + ...+... ..+..+.| +
T Consensus 79 -------------------------------------------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 79 -------------------------------------------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp -------------------------------------------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred -------------------------------------------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 1233555555 32 1 2333333 55667777 6
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec-CCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp-DG~~l~~~~~~~~ 421 (958)
++.|+..+. ++.+.+|| .+.....+..+. ..+..+.|+| +++.++..
T Consensus 114 ~~~l~~~~~-------------d~~i~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~l~~~----- 161 (313)
T 3odt_A 114 DGVVISGSW-------------DKTAKVWK-EGSLVYNLQAHN-------------ASVWDAKVVSFSENKFLTA----- 161 (313)
T ss_dssp TTEEEEEET-------------TSEEEEEE-TTEEEEEEECCS-------------SCEEEEEEEETTTTEEEEE-----
T ss_pred CCEEEEEeC-------------CCCEEEEc-CCcEEEecccCC-------------CceeEEEEccCCCCEEEEE-----
Confidence 788877763 34899999 333333333221 3346788888 78776653
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 500 (958)
+..+.+.+|+. +.....+.. ....+..+.|+|+++ |+.... + ..|.++++..+ +......
T Consensus 162 --------~~d~~i~i~d~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-d---g~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 162 --------SADKTIKLWQN----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN-D---GLIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp --------ETTSCEEEEET----TEEEEEECSSCSSCEEEEEEEETTE-EEEEET-T---SEEEEEETTTC--CEEEEEE
T ss_pred --------ECCCCEEEEec----CceEEEEeccCcccEEEEEEcCCCe-EEEccC-C---CeEEEEECCch--hhhhhhh
Confidence 34567888883 223333333 455677899999998 554433 2 24667777664 3343444
Q ss_pred cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeE
Q 002164 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (958)
Q Consensus 501 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~ 580 (958)
.....+.. +.|+|+|+ |+.... ...|++||+.+++.......... .+.
T Consensus 223 ~~~~~i~~------~~~~~~~~-l~~~~~---------------------dg~v~iwd~~~~~~~~~~~~~~~----~i~ 270 (313)
T 3odt_A 223 GHESFVYC------IKLLPNGD-IVSCGE---------------------DRTVRIWSKENGSLKQVITLPAI----SIW 270 (313)
T ss_dssp CCSSCEEE------EEECTTSC-EEEEET---------------------TSEEEEECTTTCCEEEEEECSSS----CEE
T ss_pred cCCceEEE------EEEecCCC-EEEEec---------------------CCEEEEEECCCCceeEEEeccCc----eEE
Confidence 33333333 78999994 554441 12699999998887665544322 122
Q ss_pred eecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
...|++|++ ++. .. ....++++++.+++.
T Consensus 271 -------~~~~~~~~~-~~~-~~---~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 271 -------SVDCMSNGD-IIV-GS---SDNLVRIFSQEKSRW 299 (313)
T ss_dssp -------EEEECTTSC-EEE-EE---TTSCEEEEESCGGGC
T ss_pred -------EEEEccCCC-EEE-Ee---CCCcEEEEeCCCCce
Confidence 246889987 333 22 235688998877654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-10 Score=139.28 Aligned_cols=298 Identities=10% Similarity=0.055 Sum_probs=176.1
Q ss_pred eeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc------eeeccCCCCccccccccceEEecC
Q 002164 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK------ARPLFQSPDIYLNAIFDNFVWVNN 254 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~------~~~lt~~~~~~~~~~~~~~~wspD 254 (958)
.+.+++ ..+...+|+||+..++.+.. ....|.+|++..+. .+.+..+... +..++|+||
T Consensus 377 ~l~~H~--~~V~~v~~~~~~~~~l~s~s--------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~ 441 (694)
T 3dm0_A 377 TMRAHT--DMVTAIATPIDNADIIVSAS--------RDKSIILWKLTKDDKAYGVAQRRLTGHSHF-----VEDVVLSSD 441 (694)
T ss_dssp EEECCS--SCEEEEECCTTCCSEEEEEE--------TTSEEEEEECCCSTTCSCEEEEEEECCSSC-----EEEEEECTT
T ss_pred hcccCC--ceeEEEEecCCCCCEEEEEe--------CCCcEEEEEccCCCcccccccceecCCCCc-----EEEEEECCC
Confidence 344433 56889999998755554432 24567777776532 1233333322 778999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~- 331 (958)
|++|+... ....|.++++ ++. .+.+..+
T Consensus 442 g~~l~sgs-------------------------------------------------~Dg~v~vwd~~~~~~~~~~~~h~ 472 (694)
T 3dm0_A 442 GQFALSGS-------------------------------------------------WDGELRLWDLAAGVSTRRFVGHT 472 (694)
T ss_dssp SSEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECCS
T ss_pred CCEEEEEe-------------------------------------------------CCCcEEEEECCCCcceeEEeCCC
Confidence 99998761 2345778888 774 3444444
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..++|||||++|+..+.+ +.|.+||+.+.....+..... ++...+..+.|+|++.
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGE---------GHRDWVSCVRFSPNTL 530 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTT---------SCSSCEEEEEECSCSS
T ss_pred CCEEEEEEeCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCC---------CCCCcEEEEEEeCCCC
Confidence 778899999999999887743 489999987665444432110 1123457789999985
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.-.+.+ .+..+.|.+|++ ..+.....+..+...+..++|+|||+.|+..+.++. .+|| |+.++
T Consensus 531 ~~~l~s-----------~s~d~~v~vwd~--~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~--i~iw--d~~~~ 593 (694)
T 3dm0_A 531 QPTIVS-----------ASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV--VLLW--DLAEG 593 (694)
T ss_dssp SCEEEE-----------EETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB--CEEE--ETTTT
T ss_pred cceEEE-----------EeCCCeEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe--EEEE--ECCCC
Confidence 422221 134567899996 233333445556677888999999999887765443 4454 55543
Q ss_pred CCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
+....... ...+.. ++|+||+.+|+.... ..|.+||+.+++........
T Consensus 594 --~~~~~~~~-~~~v~~------~~~sp~~~~l~~~~~----------------------~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 594 --KKLYSLEA-NSVIHA------LCFSPNRYWLCAATE----------------------HGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp --EEEECCBC-SSCEEE------EEECSSSSEEEEEET----------------------TEEEEEETTTTEEEEEECCC
T ss_pred --ceEEEecC-CCcEEE------EEEcCCCcEEEEEcC----------------------CCEEEEECCCCCChhhhccc
Confidence 21211111 111222 789999988766541 14899999888765443322
Q ss_pred cccccce-----eEe---ecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 572 KEKYYET-----TVA---LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 572 ~~~~~~~-----~~~---~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
...-.+. ... ....-...+|||||+.|+.-.. ...+.++++
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~----Dg~i~iW~i 691 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT----DGVIRVWGI 691 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEET----TSEEEEEEC
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC----CCeEEEEec
Confidence 1100000 000 0000123578999987764333 245777775
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-14 Score=149.76 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=118.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-------hhHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-------RFVEQLVAC 742 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-------~~~~~~~~D 742 (958)
.|+||++||.+... ..|. ..+..|+ +||.|++ .+.+|+|.+.... .......+|
T Consensus 25 ~p~vv~lHG~~~~~-----------~~~~----~~~~~l~-~g~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 85 (304)
T 3b12_A 25 GPALLLLHGFPQNL-----------HMWA----RVAPLLA-NEYTVVC---ADLRGYGGSSKPVGAPDHANYSFRAMASD 85 (304)
Confidence 57899999964221 1121 2234555 8999999 6667888775431 112344555
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC----------CC---------c
Q 002164 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----------FG---------F 803 (958)
Q Consensus 743 ~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~----------~~---------~ 803 (958)
+.++++.+ +.+++.++|||+||.+++.+|.++|++++++|++++........ +. .
T Consensus 86 l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
T 3b12_A 86 QRELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPY 159 (304)
Confidence 55555543 33589999999999999999999999999999998754311000 00 0
Q ss_pred cc---------ccch-hhh---------cH---HHH-----------------Hhc---Cc----ccccCCCCCCEEEEe
Q 002164 804 QN---------EDRT-LWE---------AT---STY-----------------VEM---SP----FMSANKLKKPILLVH 837 (958)
Q Consensus 804 ~~---------~~~~-~~~---------~~---~~~-----------------~~~---sp----~~~~~~~~~P~Lii~ 837 (958)
.. .... ... .. ..+ ... +. ...+.++++|+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~ 239 (304)
T 3b12_A 160 PEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFS 239 (304)
Confidence 00 0000 000 00 000 000 00 011567899999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
|++|..++ +......+.+.+. .+++.++ ++||.+. .++...+.+.|.+||.+..
T Consensus 240 G~~D~~~~-~~~~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (304)
T 3b12_A 240 GSAGLMHS-LFEMQVVWAPRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDAR 293 (304)
Confidence 99996553 0333333333332 3577778 9999874 4566778888999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-11 Score=130.08 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=141.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC--ceeeccCCCCccccccccceEEecC--CeEEEEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g--~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~ 264 (958)
..+...+|||||++|+.... ...|.+|++.++ +.......... .+..++|+++ ++.|+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~-- 76 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSS---------DKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCS-- 76 (379)
T ss_dssp CCEEEEEECSSSSEEEEEET---------TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE--
T ss_pred ccEEEEEEcCCCCEEEEEEC---------CCcEEEEecCCCcceeeeEecCCCC----cEEEEEeCCCCCCCEEEEec--
Confidence 46889999999999988652 445666776633 33222222222 2778999977 88888762
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-cccccccc
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~ 339 (958)
....|.++++ +++ ...+... ..+..++|
T Consensus 77 -----------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 77 -----------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109 (379)
T ss_dssp -----------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence 1234667777 663 3344433 67889999
Q ss_pred CCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec---------
Q 002164 340 SPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS--------- 408 (958)
Q Consensus 340 SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp--------- 408 (958)
+|+ |+.|+....+ +.+.+||+........... ......+..+.|+|
T Consensus 110 ~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 110 APHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIII----------DAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp CCGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEE----------ECCTTCEEEEEECCCC-------
T ss_pred CCCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEe----------cCCCCceEEEEEcCccccccccc
Confidence 999 8988888743 4899999985421111000 01113457889999
Q ss_pred ----CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce----EEEeeccccCceeeecC---CceEEEEEecc
Q 002164 409 ----DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE----ILHKLDLRYGGISWCDD---SLALVYESWYK 477 (958)
Q Consensus 409 ----DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~----~l~~~~~~~~~~~~spD---g~~l~~~~~~~ 477 (958)
|++.++.. +..+.|++|++ ..+.... .+..+...+..+.|+|+ ++.|+....++
T Consensus 167 ~~~~~~~~l~~~-------------~~dg~i~i~d~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 167 NGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp ---CTTCEEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred cCCCCCCEEEEE-------------eCCCeEEEEEe--cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 67776663 34567888885 2232222 22334556778999999 77777665443
Q ss_pred ccceEEEEEcCCCCCCCcEEEecc--CCccccCCCCCCceEeccCCceEEEEe
Q 002164 478 TRRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
. .++|.+...... ....+... ....+.. ++|+|||++|+...
T Consensus 232 ~--i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~------~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 232 T--CIIWTQDNEQGP-WKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 275 (379)
T ss_dssp C--EEEEEESSTTSC-CEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred E--EEEEeCCCCCcc-ceeeeeccccCCCcEEE------EEEcCCCCEEEEec
Confidence 3 667766543321 11222211 1222222 78999999988876
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=124.99 Aligned_cols=227 Identities=11% Similarity=0.105 Sum_probs=137.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc--e-eeccCCCCccccccccceEEec--CCeEEEEEec
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--A-RPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIP 263 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~--~-~~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~ 263 (958)
..+...+|||||++||.... ...|.+|+++++. . ..+..+.. .+..++|+| +|+.|+...
T Consensus 10 ~~V~~~~~s~~g~~las~s~---------D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s- 74 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSS---------DKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS- 74 (297)
T ss_dssp SCEEEEEECTTSSEEEEEET---------TSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEE-
T ss_pred CceEEEEECCCCCEEEEEeC---------CCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEc-
Confidence 46888999999999988652 5567778876542 2 23332222 277899986 488888662
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~ 338 (958)
....|.++++ +|+ ...+... ..+..++
T Consensus 75 ------------------------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~ 106 (297)
T 2pm7_B 75 ------------------------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106 (297)
T ss_dssp ------------------------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEE
T ss_pred ------------------------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEE
Confidence 1234667777 653 2233333 6688999
Q ss_pred cCCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCce-E--EEeccCCccccCcccccccccCcceeeeecCC---
Q 002164 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK--- 410 (958)
Q Consensus 339 ~SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~--~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG--- 410 (958)
|+|| |+.|+..+. ++.+.+||+..+. . ..+. +....+..+.|+|++
T Consensus 107 ~~p~~~g~~l~s~s~-------------d~~v~~wd~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 107 WAPHEYGPMLLVASS-------------DGKVSVVEFKENGTTSPIIID-------------AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp ECCGGGCSEEEEEET-------------TSEEEEEEBCSSSCBCCEEEE-------------CCSSCEEEEEECCCC---
T ss_pred eCcCCCCcEEEEEEC-------------CCcEEEEEecCCCceeeeeee-------------cccCccceEeecCCcccc
Confidence 9998 888887763 3489999987542 1 1111 122455788999974
Q ss_pred ----------CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc----eEEEeeccccCceeeecCC---ceEEEE
Q 002164 411 ----------PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDDS---LALVYE 473 (958)
Q Consensus 411 ----------~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~l~~~~~~~~~~~~spDg---~~l~~~ 473 (958)
+.|+. .+..+.|.+|++ ..+... ..+..+...+..++|+|++ +.|+..
T Consensus 161 ~~~~~~~~~~~~l~s-------------gs~D~~v~lwd~--~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 161 DGEHNGTKESRKFVT-------------GGADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp ---------CCEEEE-------------EETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred cccCCCCCCcceEEE-------------EcCCCcEEEEEE--cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 33333 144557888885 122221 2333455667889999996 666665
Q ss_pred EeccccceEEEEEcCCCCCCCcEEEe--ccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 474 SWYKTRRTRTWVISPGSKDVAPRILF--DRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+.++. .+||.++...... ...+. ......++. ++|+|||++|+...
T Consensus 226 s~D~~--v~iWd~~~~~~~~-~~~~~~~~~~~~~v~~------~~~s~~g~~las~~ 273 (297)
T 2pm7_B 226 SQDRT--CIIWTQDNEQGPW-KKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (297)
T ss_dssp ETTSC--EEEEEESSTTSCC-EEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred ECCCc--EEEEEeCCCCCcc-ceeeeecccCCCcEEE------EEECCCCCEEEEEc
Confidence 54443 6788776432211 11122 112222333 78999999998776
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-11 Score=130.03 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCC-CceeeeccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL-GQEIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~-~~~~~lt~~~~~ 188 (958)
.+..++|||||++||....+ +.|.+|++...... .....+.. ..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~d---------------------------------g~i~iw~~~~~~~~~~~~~~~~~--~~ 57 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSD---------------------------------QHIKVFKLDKDTSNWELSDSWRA--HD 57 (351)
T ss_dssp CEEEEEECSSSSEEEEEETT---------------------------------SEEEEEEECSSSCCEEEEEEEEC--CS
T ss_pred ceeEEEEcCCCCEEEEeeCC---------------------------------CeEEEEECCCCCCcceecceecc--CC
Confidence 46788999999999988765 47899998642210 01222333 33
Q ss_pred CcccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCce----------eeccCCCCccccccccceEEecC--
Q 002164 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA----------RPLFQSPDIYLNAIFDNFVWVNN-- 254 (958)
Q Consensus 189 ~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~lt~~~~~~~~~~~~~~~wspD-- 254 (958)
..+....|+| ||+.|+.... ...|.+|++.+++. ..+..... .+..++|+|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 123 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASY---------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHL 123 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEET---------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGG
T ss_pred CcEEEEEEcCCCCCCEEEEEcC---------CCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCC
Confidence 4789999999 6998888652 45778888877632 22222222 2778999999
Q ss_pred CeEEEEE
Q 002164 255 STLLVCT 261 (958)
Q Consensus 255 G~~l~~~ 261 (958)
++.|+..
T Consensus 124 ~~~l~~~ 130 (351)
T 3f3f_A 124 GLKLACL 130 (351)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 9988876
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=139.90 Aligned_cols=168 Identities=12% Similarity=0.065 Sum_probs=105.6
Q ss_pred HCCcEEEEcCCCCCCCCCCcc-cc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 710 ARGFAILGGPTTPIIGEGDEE-AN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~-~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
++||.|++ .+.+|+|.+. .. ........+|+.++++.+ ..+++.|+|||+||.+++.+|.++|+++++
T Consensus 67 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 137 (292)
T 3l80_A 67 PDSIGILT---IDAPNSGYSPVSNQANVGLRDWVNAILMIFEHF------KFQSYLLCVHSIGGFAALQIMNQSSKACLG 137 (292)
T ss_dssp CTTSEEEE---ECCTTSTTSCCCCCTTCCHHHHHHHHHHHHHHS------CCSEEEEEEETTHHHHHHHHHHHCSSEEEE
T ss_pred hhcCeEEE---EcCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCCeEEEEEchhHHHHHHHHHhCchheee
Confidence 37999999 5666888776 22 122455566665555443 335899999999999999999999999999
Q ss_pred EEEeccC---------CCCCCCC----CCcccc----------cchhh----------h----cHHHHHhcCc-------
Q 002164 787 GIARSGA---------YNRTLTP----FGFQNE----------DRTLW----------E----ATSTYVEMSP------- 822 (958)
Q Consensus 787 ~v~~~~~---------~~~~~~~----~~~~~~----------~~~~~----------~----~~~~~~~~sp------- 822 (958)
+|++++. ....... ...... ....| . ....+....+
T Consensus 138 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (292)
T 3l80_A 138 FIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIR 217 (292)
T ss_dssp EEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSS
T ss_pred EEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchh
Confidence 9999843 2100000 000000 00000 0 0011111222
Q ss_pred --------ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002164 823 --------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (958)
Q Consensus 823 --------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl 894 (958)
...+.+ ++|+|+++|++|..++ +. + ++.+.+. ..+ +++++++|.+. .++...+.+.+.+||
T Consensus 218 ~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~--~~-~-~~~~~~~----~~~-~~~~~~gH~~~-~e~p~~~~~~i~~fl 286 (292)
T 3l80_A 218 LALGEEDFKTGISE-KIPSIVFSESFREKEY--LE-S-EYLNKHT----QTK-LILCGQHHYLH-WSETNSILEKVEQLL 286 (292)
T ss_dssp CCCCGGGGCCCCCT-TSCEEEEECGGGHHHH--HT-S-TTCCCCT----TCE-EEECCSSSCHH-HHCHHHHHHHHHHHH
T ss_pred hhhcchhhhhccCC-CCCEEEEEccCccccc--hH-H-HHhccCC----Cce-eeeCCCCCcch-hhCHHHHHHHHHHHH
Confidence 123445 7999999999999886 55 4 4443332 245 88999999864 456778888999999
Q ss_pred HHh
Q 002164 895 QKY 897 (958)
Q Consensus 895 ~~~ 897 (958)
+++
T Consensus 287 ~~~ 289 (292)
T 3l80_A 287 SNH 289 (292)
T ss_dssp HTC
T ss_pred Hhc
Confidence 875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-10 Score=140.03 Aligned_cols=169 Identities=7% Similarity=0.014 Sum_probs=99.6
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..++|||||+.|+..+.+ +.|.+||+.++..+........ .......+....+..++|||||+
T Consensus 436 ~~v~sv~~spdg~~laSgs~D-------------gtVrlWd~~~g~~~~~~~~~~~-l~~~~~~~h~~~V~svafspdg~ 501 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSN-------------GSVRIYDASHGDIQDNASFEVN-LSRTLNKAKELAVDKISFAAETL 501 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETT-------------SEEEEEESSCCTTTTTBCEEEE-HHHHTTCSSSCCEEEEEEETTTT
T ss_pred CCCCcccccccCcEEEEecCC-------------CcEEEEECCCccccCCceEEee-chhhcCCCCCCceeEEEecCCCC
Confidence 445678999999999887743 4899999986632110000000 00000002224568899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC--------------------------------------------
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-------------------------------------------- 447 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-------------------------------------------- 447 (958)
.|+.- +..+.|.+|++ ++++
T Consensus 502 ~LAsg-------------s~DgtV~lwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 502 ELAVS-------------IETGDVVLFKY---EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp EEEEE-------------ETTSCEEEEEE---EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred eEEEE-------------ecCcEEEEEEe---cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 88873 34556777765 2221
Q ss_pred --ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe--c------cCCccccCCCCCCceEe
Q 002164 448 --PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF--D------RSSEDVYSDPGSPMMRR 517 (958)
Q Consensus 448 --~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~ 517 (958)
...+..+...+..++||||| .|+..+.++. |.++|+.++ ..+. . .....+.+ +.|
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t----v~lwd~~~~----~~~~~~~~~~~~~gh~~~V~s------v~F 630 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS----LMLIDRRGP----AIIYMENIREISGAQSACVTC------IEF 630 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSE----EEEEETTTT----EEEEEEEGGGTCSSCCCCEEE------EEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc----EEEEECCCC----eEEEEeehhHhccccccceEE------EEE
Confidence 12233456678889999999 8887765433 444555553 2221 1 22233343 789
Q ss_pred c-----cCC---ceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC---CCCceEE
Q 002164 518 T-----STG---TYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI---NTGSKER 566 (958)
Q Consensus 518 s-----pdG---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl---~~g~~~~ 566 (958)
| ||| ++|+....+ ..|.+||+ .+|+...
T Consensus 631 s~~~~~~Dg~~~~~l~sgs~D---------------------~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 631 VIMEYGDDGYSSILMVCGTDM---------------------GEVITYKILPASGGKFDV 669 (902)
T ss_dssp EEEECTTSSSEEEEEEEEETT---------------------SEEEEEEEEECGGGCEEE
T ss_pred EEEecCCCCCcceEEEEEecC---------------------CcEEEEEEecCCCCcEEE
Confidence 9 886 777776632 25888888 6666543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-10 Score=124.54 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=171.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
+.+...||+++ .||... ...|++||+.+|+..++...... ...+..++|+|||++|+...
T Consensus 107 y~~~l~wS~~n-~lAvgl----------d~tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspdg~~lasgs------- 166 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGT------- 166 (420)
T ss_dssp TCBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEE-------
T ss_pred cceeEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecCC--CCcEEEEEECCCCCEEEEEE-------
Confidence 56678999864 666643 45899999999988766543221 11277999999999999762
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++. +.+... ..+.. +++|++.|
T Consensus 167 ------------------------------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~~--~s~~~~~l 202 (420)
T 4gga_A 167 ------------------------------------------SSAEVQLWDVQQQKRLRNMTSHSARVGS--LSWNSYIL 202 (420)
T ss_dssp ------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEE--EEEETTEE
T ss_pred ------------------------------------------CCCeEEEEEcCCCcEEEEEeCCCCceEE--EeeCCCEE
Confidence 2234777787 6654 333333 44444 45577877
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+..+. ++.+.+|+..... ...+..+. ..+..+.|+|+|+.++..
T Consensus 203 ~sgs~-------------d~~i~~~d~~~~~~~~~~~~~h~-------------~~~~~~~~~~~g~~l~s~-------- 248 (420)
T 4gga_A 203 SSGSR-------------SGHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG-------- 248 (420)
T ss_dssp EEEET-------------TSEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred EEEeC-------------CCceeEeeecccceeeEEecccc-------------cceeeeeecCCCCeeeee--------
Confidence 76653 3478899887432 22222221 344678899999987763
Q ss_pred cccccccCCeEEEEeCCCCCCCC----ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEec
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 500 (958)
...+.+.+++. ..+.. ..........+..+.|+|++..+++....... ..|.++++.++ .......
T Consensus 249 -----~~D~~v~i~~~--~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D-~~I~iwd~~t~--~~~~~~~ 318 (420)
T 4gga_A 249 -----GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIWNVCSG--ACLSAVD 318 (420)
T ss_dssp -----ETTSCEEEEES--SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT-CEEEEEETTTT--EEEEEEE
T ss_pred -----eccccceEEee--ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC-CEEEEEeCCcc--ccceeec
Confidence 44567888885 22221 22334455667789999998887765432211 34566666664 2222222
Q ss_pred cCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeE
Q 002164 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (958)
Q Consensus 501 ~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~ 580 (958)
... .+.. ..|+|+++.++..... ....|++||+.+++......+... .+.
T Consensus 319 ~~~-~v~~------~~~~~~~~~lv~~sg~-------------------~d~~I~iwd~~~~~~v~~l~gH~~----~V~ 368 (420)
T 4gga_A 319 AHS-QVCS------ILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGHTS----RVL 368 (420)
T ss_dssp CSS-CEEE------EEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred ccc-ceee------eeecCCCCeEEEEEec-------------------CCCEEEEEECCCCcEEEEEcCCCC----CEE
Confidence 221 1222 6799999988876511 112599999998876655443221 122
Q ss_pred eecCCCccccccccCCEEEEEEecCCCCceEEEEECCCC
Q 002164 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDK 619 (958)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g 619 (958)
..+|+|||+.|+.... ...|.+|++.+.
T Consensus 369 -------~l~~spdg~~l~S~s~----D~tvriWdv~~~ 396 (420)
T 4gga_A 369 -------SLTMSPDGATVASAAA----DETLRLWRCFEL 396 (420)
T ss_dssp -------EEEECTTSSCEEEEET----TTEEEEECCSCS
T ss_pred -------EEEEcCCCCEEEEEec----CCeEEEEECCCC
Confidence 2478999987654322 245888887543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=127.07 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=166.8
Q ss_pred CcccceeecCC---CCeEEEEEeeccccCCCCCceEEEEEcCCCcee-eccCCCCccccccccceEEecC----CeEEEE
Q 002164 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNN----STLLVC 260 (958)
Q Consensus 189 ~~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspD----G~~l~~ 260 (958)
..+...+|+|+ ++.++++... ...|.+|+..+++.. .+...........+..++|+|+ |++|+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~--------~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVG--------SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEE--------TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECC--------CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 46888999985 6655555431 337888888865543 3321111101122678999999 677876
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-cccccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSL 337 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~ 337 (958)
.. ..+.|.++++ +++. ..+... ..+..+
T Consensus 91 ~~-------------------------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AG-------------------------------------------------SRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EE-------------------------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ec-------------------------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 61 2345778888 6643 344433 778899
Q ss_pred ccCC-CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 338 DPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 338 ~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.|+| |++.|+..+. ++.|.+||+..++... +.... .....+..+.|+|||+.++.
T Consensus 122 ~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 122 KFHPRDPNLLLSVSK-------------DHALRLWNIQTDTLVAIFGGVE----------GHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp EECSSCTTEEEEEET-------------TSCEEEEETTTTEEEEEECSTT----------SCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCCEEEEEeC-------------CCeEEEEEeecCeEEEEecccc----------cccCceeEEEECCCCCEEEE
Confidence 9999 8998887763 3489999998655433 32111 11145678999999998776
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEE----------------------------EeeccccCceeeecC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----------------------------HKLDLRYGGISWCDD 466 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----------------------------~~~~~~~~~~~~spD 466 (958)
. +..+.|.+|++ ..++. ..+ ......+..+.|+
T Consensus 179 ~-------------~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 179 C-------------GMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp E-------------ETTSCEEEEES---CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred e-------------cCCCCEEEEEC---CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 3 34567888885 32211 111 0144556778888
Q ss_pred CceEEEEEeccccceEEEEEcCCCCC--------C--CcEEEeccCCccccCCCCCCceEeccC--CceEEEEeeeccCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKD--------V--APRILFDRSSEDVYSDPGSPMMRRTST--GTYVIAKIKKENDE 534 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~ 534 (958)
++.|+.....+. ..+|.+...... . ............+.. +.|+|| |++|+....+
T Consensus 241 ~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~~~l~~~~~d---- 308 (366)
T 3k26_A 241 GDLILSKSCENA--IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY------MRFSMDFWQKMLALGNQV---- 308 (366)
T ss_dssp TTEEEEECSSSE--EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC------CCCEECTTSSEEEEECTT----
T ss_pred CCEEEEEecCCE--EEEEeCCCccccccccccCCcchheeccccccCCcEEE------EEEcCCCCCcEEEEEecC----
Confidence 666666544322 555555432210 0 011222222223333 678999 9988877521
Q ss_pred CcEEEEccCCCCCCCCCCeEEEEECCCCceEE----EecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCce
Q 002164 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKER----IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQ 610 (958)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~ 610 (958)
..|++||+.+++... ....... ...+. ..+|++|++.++.... ...
T Consensus 309 -----------------g~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~-------~~~~s~~~~~l~s~~~----dg~ 358 (366)
T 3k26_A 309 -----------------GKLYVWDLEVEDPHKAKCTTLTHHKC--GAAIR-------QTSFSRDSSILIAVCD----DAS 358 (366)
T ss_dssp -----------------SCEEEEECCSSSGGGCEEEEECCTTC--CSCEE-------EEEECTTSSEEEEEET----TSE
T ss_pred -----------------CcEEEEECCCCCCccccceEEccccc--CCceE-------EEEeCCCCCeEEEEeC----CCE
Confidence 259999998875321 1211100 00112 2578999987765443 245
Q ss_pred EEEEECC
Q 002164 611 YYIQSWP 617 (958)
Q Consensus 611 ~~~~d~~ 617 (958)
+++|++.
T Consensus 359 i~iwd~~ 365 (366)
T 3k26_A 359 IWRWDRL 365 (366)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 7787753
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-09 Score=122.50 Aligned_cols=292 Identities=8% Similarity=0.039 Sum_probs=166.3
Q ss_pred CCcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC---------CccccccccceEEec-CCe
Q 002164 188 GAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP---------DIYLNAIFDNFVWVN-NST 256 (958)
Q Consensus 188 ~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~---------~~~~~~~~~~~~wsp-DG~ 256 (958)
...+...+|+| ||+.|+.... ...|.+|++.+++........ .......+..++|+| +++
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGS---------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEET---------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred CCcEEEEEEecCCCCEEEEEcC---------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 35789999999 9999988652 557888898877654332100 000112277899999 666
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVY 334 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~ 334 (958)
.|+... ....|.++++ +++....... ..+
T Consensus 114 ~l~s~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (408)
T 4a11_B 114 MFTSSS-------------------------------------------------FDKTLKVWDTNTLQTADVFNFEETV 144 (408)
T ss_dssp CEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCE
T ss_pred EEEEEe-------------------------------------------------CCCeEEEeeCCCCccceeccCCCce
Confidence 777551 2345778888 6654433322 455
Q ss_pred cccccCC---CCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 335 TSLDPSP---DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 335 ~~~~~Sp---DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
....|+| +++.|+.... .+.+.+||+..+. ...+..+ ...+..+.|+|||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~ 198 (408)
T 4a11_B 145 YSHHMSPVSTKHCLVAVGTR-------------GPKVQLCDLKSGSCSHILQGH-------------RQEILAVSWSPRY 198 (408)
T ss_dssp EEEEECSSCSSCCEEEEEES-------------SSSEEEEESSSSCCCEEECCC-------------CSCEEEEEECSSC
T ss_pred eeeEeecCCCCCcEEEEEcC-------------CCeEEEEeCCCcceeeeecCC-------------CCcEEEEEECCCC
Confidence 6667777 4447776663 3489999998543 3333221 1345789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-CceEE---------------EeeccccCceeeecCCceEEEEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEIL---------------HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l---------------~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
+.+++.. +..+.|.+|++ ..+. ....+ ......+..+.|+|||+.|+...
T Consensus 199 ~~ll~~~------------~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 199 DYILATA------------SADSRVKLWDV--RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp TTEEEEE------------ETTSCEEEEET--TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEE------------cCCCcEEEEEC--CCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 9855531 34557888886 2222 22222 23344567789999999988776
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEe-ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
..+. |.++++.++.. ............. ....+.+ ...+..+++... ...
T Consensus 265 ~dg~----i~vwd~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------------~~~ 315 (408)
T 4a11_B 265 TDNR----MRLWNSSNGEN--TLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPY---------------------GST 315 (408)
T ss_dssp TTSC----EEEEETTTCCB--CCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEE---------------------TTE
T ss_pred CCCe----EEEEECCCCcc--ceecccccccccc--ccceeEEecCCCceEEEEec---------------------CCE
Confidence 4432 55556555421 1111110000000 0001112 222333444331 126
Q ss_pred EEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 554 LDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
|++||+.+++.......... .+. ..+|++|++.++.... ...+.++++.+++.
T Consensus 316 i~v~d~~~~~~~~~~~~~~~----~v~-------~~~~s~~~~~l~s~~~----dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 316 IAVYTVYSGEQITMLKGHYK----TVD-------CCVFQSNFQELYSGSR----DCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEETTTCCEEEEECCCSS----CEE-------EEEEETTTTEEEEEET----TSCEEEEEECC---
T ss_pred EEEEECcCCcceeeeccCCC----eEE-------EEEEcCCCCEEEEECC----CCeEEEEeCCCCCc
Confidence 99999998887666543322 122 2578999987765443 24588888877653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-09 Score=124.43 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=154.4
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
+.|.+|++.+ + .....+.+ +...+....|+||+ .|+... ....|.+|++.+++...........
T Consensus 142 g~i~vwd~~~-~--~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s---------~dg~i~vwd~~~~~~~~~~~~h~~~- 205 (464)
T 3v7d_B 142 KMIRVYDSIN-K--KFLLQLSG--HDGGVWALKYAHGG-ILVSGS---------TDRTVRVWDIKKGCCTHVFEGHNST- 205 (464)
T ss_dssp SCEEEEETTT-T--EEEEEECC--CSSCEEEEEECSTT-EEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC-
T ss_pred CcEEEEECCC-C--cEEEEEeC--CCcCEEEEEEcCCC-EEEEEe---------CCCCEEEEECCCCcEEEEECCCCCc-
Confidence 5799999854 2 23344443 33578999999998 555533 2567899999988766554433322
Q ss_pred cccccceEEe--cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 243 NAIFDNFVWV--NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 243 ~~~~~~~~ws--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
+..++|+ ++++.|+....+. .|.+++
T Consensus 206 ---v~~l~~~~~~~~~~l~s~s~d~-------------------------------------------------~i~vwd 233 (464)
T 3v7d_B 206 ---VRCLDIVEYKNIKYIVTGSRDN-------------------------------------------------TLHVWK 233 (464)
T ss_dssp ---EEEEEEEESSSCEEEEEEETTS-------------------------------------------------CEEEEE
T ss_pred ---cEEEEEecCCCCCEEEEEcCCC-------------------------------------------------cEEEee
Confidence 6677888 6888888763221 122222
Q ss_pred c-CCe------------------------eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 321 L-DGT------------------------VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 321 ~-~g~------------------------~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
+ ++. ...+... ..+ .+++++|+.|+..+.+ +.|.+||+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d-------------~~i~vwd~~ 298 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYD-------------NTLIVWDVA 298 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETT-------------SCEEEEETT
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCC-------------CeEEEEECC
Confidence 2 111 1111111 222 2457899999888743 489999998
Q ss_pred CceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe
Q 002164 375 GIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (958)
Q Consensus 375 ~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~ 453 (958)
++... .+..+ ...+..+.|+|||+.++.. +..+.|++|++ ..+.....+..
T Consensus 299 ~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~sg-------------~~dg~i~vwd~--~~~~~~~~~~~ 350 (464)
T 3v7d_B 299 QMKCLYILSGH-------------TDRIYSTIYDHERKRCISA-------------SMDTTIRIWDL--ENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEECCC-------------SSCEEEEEEETTTTEEEEE-------------ETTSCEEEEET--TTTEEEEEECC
T ss_pred CCcEEEEecCC-------------CCCEEEEEEcCCCCEEEEE-------------eCCCcEEEEEC--CCCcEEEEEeC
Confidence 65433 33221 1445789999999987763 44567999996 23333344445
Q ss_pred eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccC
Q 002164 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKEND 533 (958)
Q Consensus 454 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 533 (958)
+...+..+.|+ ++.|+..+.++ .|.++++.++ ........ ... .....|+++|+.|+....
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg----~v~vwd~~~~--~~~~~~~~-~~~------~~~~~~~~~~~~l~~~~d---- 411 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKFSYHH-TNL------SAITTFYVSDNILVSGSE---- 411 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTS----EEEEEETTTC--CEEEEEEC-TTC------CCEEEEEECSSEEEEEET----
T ss_pred CCCcEEEEEEc--CCEEEEEeCCC----cEEEEECCCC--ceeeeecC-CCC------ccEEEEEeCCCEEEEecC----
Confidence 55566777776 56666655433 3555666653 22222211 111 112678999998876641
Q ss_pred CCcEEEEccCCCCCCCCCCeEEEEECCCCceEE
Q 002164 534 EGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (958)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~ 566 (958)
..|.+||+.+|+..+
T Consensus 412 ------------------g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 ------------------NQFNIYNLRSGKLVH 426 (464)
T ss_dssp ------------------TEEEEEETTTCCEEE
T ss_pred ------------------CeEEEEECCCCcEEe
Confidence 259999999988765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-09 Score=120.98 Aligned_cols=324 Identities=9% Similarity=0.001 Sum_probs=178.9
Q ss_pred eceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC--CCceeeccCCCC
Q 002164 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQSPD 239 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~--~g~~~~lt~~~~ 239 (958)
+.|+++|..+ ++ ..++ +.+.....+.+||||++++.... ...|+++|+. +++...-.....
T Consensus 177 ~~V~viD~~t----~~v~~~i---~~g~~p~~v~~SpDGr~lyv~~~---------dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 177 GQIALIDGST----YEIKTVL---DTGYAVHISRLSASGRYLFVIGR---------DGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp TEEEEEETTT----CCEEEEE---ECSSCEEEEEECTTSCEEEEEET---------TSEEEEEETTSSSCCEEEEEECCS
T ss_pred CeEEEEECCC----CeEEEEE---eCCCCccceEECCCCCEEEEEcC---------CCeEEEEECCCCCCcEeEEEecCC
Confidence 3688888744 32 2233 23344568899999998776541 3479999995 554432222122
Q ss_pred ccccccccceEEe----cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcce
Q 002164 240 IYLNAIFDNFVWV----NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (958)
Q Consensus 240 ~~~~~~~~~~~ws----pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~ 315 (958)
. ...+++| |||++++++.. ...+
T Consensus 241 ~-----P~~ia~s~~~~pDGk~l~v~n~------------------------------------------------~~~~ 267 (567)
T 1qks_A 241 E-----ARSIETSKMEGWEDKYAIAGAY------------------------------------------------WPPQ 267 (567)
T ss_dssp E-----EEEEEECCSTTCTTTEEEEEEE------------------------------------------------ETTE
T ss_pred C-----CceeEEccccCCCCCEEEEEEc------------------------------------------------cCCe
Confidence 1 4478999 79999997710 1244
Q ss_pred EEEEEc-CCeeee-cCCC------------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe
Q 002164 316 LVLVSL-DGTVKE-IGPP------------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (958)
Q Consensus 316 l~~~~~-~g~~~~-l~~~------------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l 381 (958)
+.++|. +.+... +... ..+..+..|+++..+++.... .++|+++|........+
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~------------~g~v~~vd~~~~~~~~v 335 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLKT 335 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC------------CCeEEEEecCCCcccee
Confidence 666676 553322 2111 123456678888776665522 45899998874322222
Q ss_pred ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--ccc--
Q 002164 382 CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLR-- 457 (958)
Q Consensus 382 ~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~-- 457 (958)
+..+.. .....+.|+|||++++... ...+.|.++|. ..++....... ...
T Consensus 336 ~~i~~~-----------~~~~d~~~~pdgr~~~va~------------~~sn~V~ViD~---~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 336 TEISAE-----------RFLHDGGLDGSHRYFITAA------------NARNKLVVIDT---KEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp EEEECC-----------SSEEEEEECTTSCEEEEEE------------GGGTEEEEEET---TTTEEEEEEECSSSSBCC
T ss_pred eeeecc-----------ccccCceECCCCCEEEEEe------------CCCCeEEEEEC---CCCcEEEEEeccCcCCCC
Confidence 221111 2235678999999877741 23567889996 44443333222 111
Q ss_pred cCcee-eecCCceEEEEEeccccceEEEEEcCCCCCC-----CcEEEeccCCccccCCCCCCceEeccCCceEEEEeeec
Q 002164 458 YGGIS-WCDDSLALVYESWYKTRRTRTWVISPGSKDV-----APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (958)
Q Consensus 458 ~~~~~-~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (958)
.+.+. +.|++..++++.+.+. ..|.+++.+.... +.......... +...+..+|||++|+.....
T Consensus 390 g~g~~~~~p~~g~v~~t~~~g~--~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~- 460 (567)
T 1qks_A 390 GRGANFVHPTFGPVWATSHMGD--DSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATL- 460 (567)
T ss_dssp TTCEEEEETTTEEEEEEEBSSS--SEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTT-
T ss_pred ccceeeECCCCCcEEEeCCCCC--CeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCC-
Confidence 13444 4788888776665443 3477777765311 11111111111 12226679999987765410
Q ss_pred cCCCcEEEEccCCCCCCC-CCCeEEEEECCCC-----ce--EEEecCCcccc---cceeEeecCCCccccccccCCEEEE
Q 002164 532 NDEGTYILLNGNGATPEG-NIPFLDLFDINTG-----SK--ERIWESDKEKY---YETTVALMSDQTEGDLYLNQLKILT 600 (958)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~-~~~~L~~~dl~~g-----~~--~~l~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (958)
.++. ....|.++|+++. .. +.+.-.++... -..+. .+.|++||+++++
T Consensus 461 --------------~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~G~~~~~ 519 (567)
T 1qks_A 461 --------------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV-------QGEFNKDGTEVWF 519 (567)
T ss_dssp --------------CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE-------EEEECTTSSEEEE
T ss_pred --------------CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE-------eeeECCCCCEEEE
Confidence 0000 0235889998765 11 22311100000 00111 2579999999999
Q ss_pred EEecC-CCCceEEEEECCCCCeeE
Q 002164 601 SKESK-TENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 601 ~~~s~-~~p~~~~~~d~~~g~~~~ 623 (958)
+..+. .....|.++|..+++.+.
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEEEE
T ss_pred EeecCCCCCCcEEEEECCCceEEE
Confidence 87643 356789999988876543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=128.58 Aligned_cols=243 Identities=11% Similarity=0.230 Sum_probs=147.7
Q ss_pred CCCCCceecCCC-CEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCC-------CCCCcee
Q 002164 109 PPLPALSFSPQR-DKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD-------GKLGQEI 180 (958)
Q Consensus 109 ~~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d-------g~~~~~~ 180 (958)
..+..++|+|++ +.||....+ +.|.+|++... +......
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~d---------------------------------g~V~vwd~~~~~~~~~~~~~~~~~~ 175 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPS---------------------------------SDVLVFDYTKHPSKPEPSGECQPDL 175 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSS---------------------------------SCEEEEEGGGSCSSCCTTCCCCCSE
T ss_pred CcEEEEEECCCCCcEEEEECCC---------------------------------CcEEEEECCCcccccCccccCCCcE
Confidence 367889999984 455544433 47899998541 2123334
Q ss_pred eeccCCCCCcccceeecCCCC-eEEEEEeeccccCCCCCceEEEEEcCCCce--------eeccCCCCccccccccceEE
Q 002164 181 EIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVW 251 (958)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~lt~~~~~~~~~~~~~~~w 251 (958)
.+.. +...+....|+|+++ .|+... ....|.+|++..+.. ..+..... .+..++|
T Consensus 176 ~~~~--h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~ 239 (430)
T 2xyi_A 176 RLRG--HQKEGYGLSWNPNLNGYLLSAS---------DDHTICLWDINATPKEHRVIDAKNIFTGHTA-----VVEDVAW 239 (430)
T ss_dssp EEEC--CSSCCCCEEECTTSTTEEEEEC---------TTSCEEEEETTSCCBGGGEEECSEEECCCSS-----CEEEEEE
T ss_pred EecC--CCCCeEEEEeCCCCCCeEEEEe---------CCCeEEEEeCCCCCCCCceeccceeecCCCC-----CEeeeEE
Confidence 4443 334689999999999 555532 356788888876321 11222121 2778999
Q ss_pred ec-CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC----ee
Q 002164 252 VN-NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TV 325 (958)
Q Consensus 252 sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g----~~ 325 (958)
+| ++..|+... ....|.++++ ++ ..
T Consensus 240 ~p~~~~~l~s~~-------------------------------------------------~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 240 HLLHESLFGSVA-------------------------------------------------DDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp CSSCTTEEEEEE-------------------------------------------------TTSEEEEEETTCSCSSSCS
T ss_pred eCCCCCEEEEEe-------------------------------------------------CCCeEEEEECCCCCCCcce
Confidence 99 455555441 2345778887 54 22
Q ss_pred eecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ce-EEEeccCCccccCcccccccccCcc
Q 002164 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IF-VRELCDLPLAEDIPIAFNSVRKGMR 402 (958)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~-~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (958)
..+... ..+..++|+|+|++++++... ++.|.+||+.. +. ...+..+ ...+.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~------------dg~v~vwd~~~~~~~~~~~~~h-------------~~~v~ 325 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSA------------DKTVALWDLRNLKLKLHSFESH-------------KDEIF 325 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCTTSCSEEEECC-------------SSCEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeC------------CCeEEEEeCCCCCCCeEEeecC-------------CCCEE
Confidence 333333 678899999999976655533 34899999985 22 2222221 14567
Q ss_pred eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC---------CceEE---EeeccccCceeeecCCceE
Q 002164 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE---------GPEIL---HKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 403 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~---------~~~~l---~~~~~~~~~~~~spDg~~l 470 (958)
.+.|+|+|+.+++.. +..+.|.+|++...... ....+ ..+...+..+.|+|+++++
T Consensus 326 ~i~~sp~~~~~l~s~------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 326 QVQWSPHNETILASS------------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp EEEECSSCTTEEEEE------------ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred EEEECCCCCCEEEEE------------eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 899999998866641 33557888886211100 01223 2234457789999999966
Q ss_pred EEEEeccccceEEEEEc
Q 002164 471 VYESWYKTRRTRTWVIS 487 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~ 487 (958)
+++...++ ..++|.++
T Consensus 394 l~s~s~dg-~i~iw~~~ 409 (430)
T 2xyi_A 394 ICSVSEDN-IMQVWQMA 409 (430)
T ss_dssp EEEEETTS-EEEEEEEC
T ss_pred EEEEECCC-CEEEeEcc
Confidence 65555443 25677664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-10 Score=124.26 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=135.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee---eccCCCCccccccccceEEec--CCeEEEEEec
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIP 263 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~---~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~ 263 (958)
..+...+|+|||++||.... ...|.+|++.++... .+..+.. .+..++|+| +|+.|+...
T Consensus 14 ~~V~~v~~s~~g~~lasgs~---------D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s- 78 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSS---------DRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCS- 78 (316)
T ss_dssp CCEEEEEECGGGCEEEEEET---------TTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEE-
T ss_pred CeEEEeeEcCCCCEEEEEeC---------CCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEE-
Confidence 46888999999999988652 557788888776432 2222222 277899985 488888662
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~ 338 (958)
....|.++++ +++ ...+... ..+..++
T Consensus 79 ------------------------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 79 ------------------------------------------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp ------------------------------------------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred ------------------------------------------------CCCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 1234666676 553 2233333 6788999
Q ss_pred cCCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 339 PSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 339 ~SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
|+|| |+.|+..+. ++.+.+|++.++. ...+.... .....+..+.|+|++..--+
T Consensus 111 ~~p~~~g~~lasgs~-------------D~~i~lwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 111 WAPHDYGLILACGSS-------------DGAISLLTYTGEGQWEVKKINN----------AHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCTTTCSCEEEECS-------------SSCEEEEEECSSSCEEECCBTT----------SSSSCBCCCEECCCCCC---
T ss_pred ECCCCCCcEEEEEcC-------------CCCEEEEecCCCCCcceeeeec----------cccCCcceEEEccccCCccc
Confidence 9998 777777663 3489999988542 22111111 11234567889998421000
Q ss_pred EEEeccC-----CCcccccccCCeEEEEeCCCCCCCCceE---EEeeccccCceeeecCC----ceEEEEEeccccceEE
Q 002164 416 WAETQDG-----GDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLDLRYGGISWCDDS----LALVYESWYKTRRTRT 483 (958)
Q Consensus 416 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~g~~~~~---l~~~~~~~~~~~~spDg----~~l~~~~~~~~~~~~l 483 (958)
.. ...+ +...+..+..+.|.+|+. ..++..+. +..+...+..++|+|++ +.|+..+.++. .+|
T Consensus 168 ~~-~~~~~~~~~~~~l~sgs~D~~v~lWd~--~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~--v~i 242 (316)
T 3bg1_A 168 ID-HPSGQKPNYIKRFASGGCDNLIKLWKE--EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--VFI 242 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEE--CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE--EEE
T ss_pred cc-cccccCccccceEEEecCCCeEEEEEe--CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe--EEE
Confidence 00 0000 000111234556778885 12222222 23445567889999997 56666554433 556
Q ss_pred EEEcCCC-CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 484 WVISPGS-KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.++... +......+ ......++. ++|+|||++|+...
T Consensus 243 w~~~~~~~~~~~~~~~-~~~~~~v~~------v~~sp~g~~las~~ 281 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLL-HKFNDVVWH------VSWSITANILAVSG 281 (316)
T ss_dssp EECSSTTCCCCBCCEE-EECSSCEEE------EEECTTTCCEEEEE
T ss_pred EEccCccccchhhhhh-hcCCCcEEE------EEEcCCCCEEEEEc
Confidence 6554311 11111222 222233343 88999999998776
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=129.68 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=80.2
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC---------CcEEEE
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---------GFAILG 717 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---------G~~vl~ 717 (958)
.+|..++...+.+.+ +..|.||++||.+.... .| ......|++. ||.|++
T Consensus 75 i~g~~i~~~~~~~~~------~~~~plll~HG~~~s~~-----------~~----~~~~~~L~~~~~~~~~~~~~~~vi~ 133 (388)
T 4i19_A 75 IDGATIHFLHVRSPE------PDATPMVITHGWPGTPV-----------EF----LDIIGPLTDPRAHGGDPADAFHLVI 133 (388)
T ss_dssp ETTEEEEEEEECCSS------TTCEEEEEECCTTCCGG-----------GG----HHHHHHHHCGGGGTSCGGGCEEEEE
T ss_pred ECCeEEEEEEccCCC------CCCCeEEEECCCCCCHH-----------HH----HHHHHHHhCcccccCCCCCCeEEEE
Confidence 389999987776542 12577999999753211 11 1334456655 999999
Q ss_pred cCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+.+|+|.+..... ......+|+.+.++. . ..++++++||||||.+++.++.++|++++++++.++.
T Consensus 134 ---~dl~G~G~S~~~~~~~~~~~~~a~~~~~l~~~---l---g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 134 ---PSLPGFGLSGPLKSAGWELGRIAMAWSKLMAS---L---GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp ---ECCTTSGGGCCCSSCCCCHHHHHHHHHHHHHH---T---TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred ---EcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---c---CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 56667887754322 233444444444333 2 3358999999999999999999999999999999864
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=123.52 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=126.9
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.... +.+ .. .|.||++||.+.... .| ......| +.+|.|++ .|.+|+
T Consensus 11 ~~g~~l~y~~~-~~G----~~--~p~vvllHG~~~~~~-----------~w----~~~~~~L-~~~~rvia---~DlrGh 64 (276)
T 2wj6_A 11 VFDNKLSYIDN-QRD----TD--GPAILLLPGWCHDHR-----------VY----KYLIQEL-DADFRVIV---PNWRGH 64 (276)
T ss_dssp ETTEEEEEEEC-CCC----CS--SCEEEEECCTTCCGG-----------GG----HHHHHHH-TTTSCEEE---ECCTTC
T ss_pred eCCeEEEEEEe-cCC----CC--CCeEEEECCCCCcHH-----------HH----HHHHHHH-hcCCEEEE---eCCCCC
Confidence 47888865543 112 11 378999999642211 11 1223344 46799999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEeccCCCCCCCC---
Q 002164 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLTP--- 800 (958)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~~--- 800 (958)
|.+.... -......+|+.+.++.+ +-+++.|+||||||.+++.+|.++ |++++++|++++........
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~ 138 (276)
T 2wj6_A 65 GLSPSEVPDFGYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAK 138 (276)
T ss_dssp SSSCCCCCCCCHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHH
Confidence 8875432 22566777777777765 225899999999999999999999 99999999987542110000
Q ss_pred --------CCcc------------cccc-h---------------hhhcH-----HHHHh-cCcccccCCCCCCEEEEee
Q 002164 801 --------FGFQ------------NEDR-T---------------LWEAT-----STYVE-MSPFMSANKLKKPILLVHG 838 (958)
Q Consensus 801 --------~~~~------------~~~~-~---------------~~~~~-----~~~~~-~sp~~~~~~~~~P~Lii~G 838 (958)
..+. .... . .|... ..+.. .++...+.++++|+|+++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~ 218 (276)
T 2wj6_A 139 SLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHI 218 (276)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEE
T ss_pred HhhhccCcchHHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEE
Confidence 0000 0000 0 00000 00000 0122345678899999987
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..|...+.......++.+.+ ...+++++|++||... .+....+.+.+.+||.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~----p~a~~~~i~~~gH~~~-~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 219 FSQPTEPEYEKINSDFAEQH----PWFSYAKLGGPTHFPA-IDVPDRAAVHIREFATAI 272 (276)
T ss_dssp ECCSCSHHHHHHHHHHHHHC----TTEEEEECCCSSSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred ecCccchhHHHHHHHHHhhC----CCeEEEEeCCCCCccc-ccCHHHHHHHHHHHHhhc
Confidence 54433220012223333332 2479999999999863 566788889999999764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-10 Score=121.23 Aligned_cols=238 Identities=15% Similarity=0.175 Sum_probs=137.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCC----CCceeeeccC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK----LGQEIEIQGF 185 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~----~~~~~~lt~~ 185 (958)
.+..++|||||++||..+.+ +.|.+|++..... ......+.++
T Consensus 60 ~v~~v~~sp~~~~las~s~D---------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFD---------------------------------STVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEEC-------CCCEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCC---------------------------------CcEEEEEcccCcCccccceeEEEEcCC
Confidence 46789999999999988765 4788998743110 0112233332
Q ss_pred CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-CCc---ee-eccCCCCccccccccceEEecCCeEEEE
Q 002164 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGK---AR-PLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 186 ~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-~g~---~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
...+...+|||||++|+.... ...|.+|++. ++. .. .+..... .+..++|+|||+.|+.
T Consensus 107 --~~~V~~v~~sp~g~~las~s~---------D~~v~iwd~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 107 --ENEVKGVAWSNDGYYLATCSR---------DKSVWIWETDESGEEYECISVLQEHSQ-----DVKHVIWHPSEALLAS 170 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEET---------TSCEEEEECCTTCCCCEEEEEECCCSS-----CEEEEEECSSSSEEEE
T ss_pred --CCcEEEEEECCCCCEEEEEeC---------CCEEEEEeccCCCCCeEEEEEeccCCC-----ceEEEEECCCCCEEEE
Confidence 246889999999999988652 5578888874 332 11 2222222 2778999999999887
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC---eeeecCCC-cccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYT 335 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~ 335 (958)
... ...|.+++. ++ ....+... ..+.
T Consensus 171 ~s~-------------------------------------------------D~~i~iW~~~~~~~~~~~~~~~h~~~v~ 201 (330)
T 2hes_X 171 SSY-------------------------------------------------DDTVRIWKDYDDDWECVAVLNGHEGTVW 201 (330)
T ss_dssp EET-------------------------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EcC-------------------------------------------------CCeEEEEECCCCCeeEEEEccCCCCcEE
Confidence 621 123444554 44 23344444 6778
Q ss_pred ccccCCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCce------EEEeccCCccccCcccccccccCcceeeee
Q 002164 336 SLDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 336 ~~~~SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~------~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
.++|+|| +..|+..+. ++.|.+|++.++. .+.+...+. .....+..++|+
T Consensus 202 ~~~~~~~~~~~~l~s~s~-------------D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~v~~s 259 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSD-------------DSTVRVWKYMGDDEDDQQEWVCEAILPD---------VHKRQVYNVAWG 259 (330)
T ss_dssp EEEECCSSSSCEEEEEET-------------TSCEEEEEEEEECTTSCEEEEEEEECCS---------CCSSCEEEEEEC
T ss_pred EEEecCCCCeeEEEEEeC-------------CCeEEEEEecCCCccccceeEEeeeccc---------ccccceEEEEEc
Confidence 8999999 667766653 3489999987431 011111110 011345788999
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE----eecc-ccCceeeec--CCceEEEEEeccccc
Q 002164 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDL-RYGGISWCD--DSLALVYESWYKTRR 480 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~~-~~~~~~~sp--Dg~~l~~~~~~~~~~ 480 (958)
+++ .|+.. +..+.|.+|+. ..++.+.+. .+.. .+..++|+| |++.|+..+.++.
T Consensus 260 ~~~-~l~s~-------------~~dg~v~iw~~---~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~-- 320 (330)
T 2hes_X 260 FNG-LIASV-------------GADGVLAVYEE---VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI-- 320 (330)
T ss_dssp TTS-CEEEE-------------ETTSCEEEEEE---ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE--
T ss_pred CCC-EEEEE-------------eCCCEEEEEEc---CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc--
Confidence 766 44331 34567888885 333222221 1222 566789999 6888877665443
Q ss_pred eEEEEE
Q 002164 481 TRTWVI 486 (958)
Q Consensus 481 ~~l~~~ 486 (958)
.+||.+
T Consensus 321 v~~W~~ 326 (330)
T 2hes_X 321 VNFWSL 326 (330)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 556643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=120.47 Aligned_cols=131 Identities=13% Similarity=-0.004 Sum_probs=71.7
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
...++|||+.+++.+. .+.++++|+.+...+.+...+..............+.+.++++|||+++++
T Consensus 204 ~~~~~~~g~~~~~~~~-------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv 270 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSY-------------YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV 270 (361)
T ss_dssp CSCCEECSSEEEEEBT-------------TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred EEEecccCCEEEEEeC-------------CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence 4456889998888762 237999998755433222111000000000001123445889999998877
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.... ++.... .......|+++|+ +.++ ...+... . ...++|||||++|+. ++. ..|.++|+.++
T Consensus 271 ~~~~-~~~~~~-~~~~~~~v~viD~---~t~~~v~~i~~~-~-p~~ia~spdg~~l~v-~n~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 271 FMHP-DGKEGT-HKFPAAEIWVMDT---KTKQRVARIPGR-D-ALSMTIDQQRNLMLT-LDG----GNVNVYDISQP 335 (361)
T ss_dssp EEES-SCCTTC-TTCCCSEEEEEET---TTTEEEEEEECT-T-CCEEEEETTTTEEEE-ECS----SCEEEEECSSS
T ss_pred EEcc-CCCccc-ccCCCceEEEEEC---CCCcEEEEEecC-C-eeEEEECCCCCEEEE-eCC----CeEEEEECCCC
Confidence 4331 111000 0112457999996 3333 3333333 3 788999999996654 443 24777788774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=112.80 Aligned_cols=283 Identities=10% Similarity=-0.002 Sum_probs=147.6
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccC-CCCCceEEEEEcCCCceeeccCCC-Ccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSP-DIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~-~~~~~~l~~~~~~~g~~~~lt~~~-~~~ 241 (958)
.+.++|..+ ++. +..++.+... .+.+||||++|+++........ +.....|.++|+++++...-...+ ...
T Consensus 48 ~v~v~D~~t----~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGS----GSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCC----CeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 467777643 221 2223333334 8999999999998763211111 112456889999887654432222 000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. ......++|||||++|+++... ...+|+++
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~-----------------------------------------------~~~~v~vi 153 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFA-----------------------------------------------AGPAVGLV 153 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecC-----------------------------------------------CCCeEEEE
Confidence 0 0013478999999999987100 01346677
Q ss_pred EcCCee-ee-cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCc-cccCcccccc
Q 002164 320 SLDGTV-KE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-AEDIPIAFNS 396 (958)
Q Consensus 320 ~~~g~~-~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~-~~~~p~~~~~ 396 (958)
|.+++. .. +.-++. +.+.|+|++.++.... ++++.+++..++....+...+. ....|
T Consensus 154 D~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~------------dg~~~~vd~~g~~~~~~~~~~~~~~~~p----- 213 (373)
T 2mad_H 154 VQGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTAAQN----- 213 (373)
T ss_pred ECCCCEEeEEcCCCce---EEEEeCCCceEEEEcC------------CCCEEEEECCCcEEEEEeccccccCCcc-----
Confidence 722232 22 221121 3455677665544322 2356666662222211110000 00001
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee----------ccc---cCceee
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLR---YGGISW 463 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~---~~~~~~ 463 (958)
-...+.+++|+..++|. ...+.++++|. .++..+.+... .+. ...+.+
T Consensus 214 ---~~~~~~~~~~~~~~~~~-------------~~~~~v~vid~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 214 ---LLTQPAQANKSGRIVWP-------------VYSGKILQADI---SAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ---eeecceeEecCCEEEEE-------------cCCceEEEEec---cCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 01235678888777764 23447888885 44333222110 111 122678
Q ss_pred ecCCceEEEEEeccc------cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcE
Q 002164 464 CDDSLALVYESWYKT------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 464 spDg~~l~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
+|||++|+....... ....|+++|+.+.+ ........ ...++ +.|||||++++|..+.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--vv~~i~~g-~~p~~------i~~s~Dg~~~l~v~~~------- 338 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQISLG-HDVDA------ISVAQDGGPDLYALSA------- 338 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--EEEEEECC-CCcCe------EEECCCCCeEEEEEcC-------
Confidence 999998877653211 12579999998852 21111111 11122 7899999976666531
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
....|.++|+++++....
T Consensus 339 ------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 ------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ------------CCCeEEEEECCCCCEEee
Confidence 113699999999887765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-10 Score=126.85 Aligned_cols=244 Identities=10% Similarity=0.072 Sum_probs=143.3
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCC--CCCCceeeeccCC
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFP 186 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~d--g~~~~~~~lt~~~ 186 (958)
.+..++||| ||++||..+.+ +.|.+|++... +.. ....++ ..
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~d---------------------------------g~v~vwd~~~~~~~~~-~~~~~~-~~ 109 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQ---------------------------------GVIKIWNLKEIIVGEV-YSSSLT-YD 109 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETT---------------------------------SEEEEEEHHHHHTTCC-CSCSEE-EE
T ss_pred ceEEEEECCCCCCEEEEecCC---------------------------------ceEEEeECcccccCcc-cceeee-cc
Confidence 577899999 99999988875 57899998431 110 111122 11
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC---CCceeeccCCCCcc--------ccccccceE--Eec
Q 002164 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD---TGKARPLFQSPDIY--------LNAIFDNFV--WVN 253 (958)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~---~g~~~~lt~~~~~~--------~~~~~~~~~--wsp 253 (958)
....+...+|+||++.|+.... ...|.+|+++ .++..+........ ....+..+. |++
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSK---------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred CCCCEEEEEEeCCCCEEEEEeC---------CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 3357899999999999888652 4466666663 34333221100000 000022233 667
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCC-
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP- 330 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~- 330 (958)
|++.|+... ....|.++|+ +++ ...+..
T Consensus 181 ~~~~l~~~~-------------------------------------------------~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 181 EKSLLVALT-------------------------------------------------NLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp SCEEEEEEE-------------------------------------------------TTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEe-------------------------------------------------CCCeEEEEeCCCCeeeEEEccC
Confidence 888888661 2346888888 664 344443
Q ss_pred -C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCccee---
Q 002164 331 -P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSI--- 404 (958)
Q Consensus 331 -~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~--- 404 (958)
. ..+..++|+|||++|+..+.+ +.|.+||+..+... .+.. ... ..+..+
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~-~~~-----------~~v~~~~~~ 266 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTR-------------GIIDIWDIRFNVLIRSWSF-GDH-----------APITHVEVC 266 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETT-------------SCEEEEETTTTEEEEEEBC-TTC-----------EEEEEEEEC
T ss_pred CCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEEcCCccEEEEEec-CCC-----------CceEEEEec
Confidence 3 678899999999999988743 48999999865543 3221 110 233456
Q ss_pred -eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--------------------------ccc
Q 002164 405 -NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------------------------DLR 457 (958)
Q Consensus 405 -~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--------------------------~~~ 457 (958)
.|+|||+.++.. +..+.|.+|++ ..+.....+... ...
T Consensus 267 ~~~s~~~~~l~s~-------------~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 267 QFYGKNSVIVVGG-------------SSKTFLTIWNF--VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp TTTCTTEEEEEEE-------------STTEEEEEEET--TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred cccCCCccEEEEE-------------cCCCcEEEEEc--CCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 456677766652 44567899996 223333333322 223
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+..++|+ +++.|+....++ .|.++++..+
T Consensus 332 v~~l~~~-~~~~l~s~~~d~----~i~~wd~~~~ 360 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATS----SIVMFSLNEL 360 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGT----EEEEEETTCG
T ss_pred eEEEEEC-CceEEEecCCCC----eEEEEECCCc
Confidence 5567788 666666554332 3666666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-09 Score=119.20 Aligned_cols=135 Identities=9% Similarity=-0.038 Sum_probs=79.1
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
..+.+++|+..++|.+. .+.++++|+.+...+.+...+..............+...+.++|||++++
T Consensus 216 ~~~~~~~~~~~~~~~~~-------------~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 216 TQPAQANKSGRIVWPVY-------------SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred ecceeEecCCEEEEEcC-------------CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 34677888888888762 23788999876544433322111100000000112334478999999888
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.......+ ......+.|+++|. ++.+. ..+ ........+.|||||++++|..+... ..|+++|+.++
T Consensus 283 V~~~~~~~~---~~~~~~~~V~VID~---~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~ 351 (373)
T 2mad_H 283 LLTSEQSAW---KLHAAAKEVTSVTG---LVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAG 351 (373)
T ss_pred EEeccCCcc---cccCCCCeEEEEEC---CCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 854321100 00012457999995 44433 444 33345678999999997778876543 46999998885
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-10 Score=123.23 Aligned_cols=179 Identities=13% Similarity=0.025 Sum_probs=111.5
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--- 780 (958)
++..| +.||.|+. .+.+|+|.+............|+.+.++.+.. .+++.|+||||||.++..+|.+.
T Consensus 102 ~~~~L-~~~~~v~~---~d~~G~G~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~lvGhS~Gg~vA~~~A~~~~~~ 172 (319)
T 3lcr_A 102 LAEEL-DAGRRVSA---LVPPGFHGGQALPATLTVLVRSLADVVQAEVA-----DGEFALAGHSSGGVVAYEVARELEAR 172 (319)
T ss_dssp HHHHH-CTTSEEEE---EECTTSSTTCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCCceEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 34444 78999999 55667776655444456666666666554422 25899999999999999999887
Q ss_pred CCceeEEEEeccCCCCCCC-CC-Cccc-ccchhhhc----------------HHHHHhcCcccccCCCCCCEEEEeeCCC
Q 002164 781 PHLFCCGIARSGAYNRTLT-PF-GFQN-EDRTLWEA----------------TSTYVEMSPFMSANKLKKPILLVHGEED 841 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~-~~-~~~~-~~~~~~~~----------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D 841 (958)
|++++++|++++....... .. .+.. ........ ...+...-.......+++|+|+++|++
T Consensus 173 ~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~- 251 (319)
T 3lcr_A 173 GLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQVWCLELLRGWRPEGLTAPTLYVRPAQ- 251 (319)
T ss_dssp TCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTTTCCCCCCSSCEEEEEESS-
T ss_pred CCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-
Confidence 7889999998765321110 00 0000 00000000 000111111112357889999999998
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC-CcccHHHHHHHHHHHHHHhh
Q 002164 842 NNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-ARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 842 ~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~-~~~~~~~~~~~i~~fl~~~l 898 (958)
..++ +.....+.+.+.. ..+++++++ +|... ..++...+.+.|.+||.+..
T Consensus 252 ~~~~--~~~~~~~~~~~~~---~~~~~~~~g-~H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 252 PLVE--QEKPEWRGDVLAA---MGQVVEAPG-DHFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp CSSS--CCCTHHHHHHHHT---CSEEEEESS-CTTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCC--cccchhhhhcCCC---CceEEEeCC-CcHHhhCcccHHHHHHHHHHHHHhcc
Confidence 4555 5666777776654 367888887 56543 33578889999999998864
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-10 Score=118.02 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=120.6
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++.... + . .|.||++||.+.... .|. ..... .+.+|.|++ .|.+|+
T Consensus 12 ~~~~~~~~~~~---g----~---g~~~vllHG~~~~~~-----------~w~----~~~~~-l~~~~~vi~---~Dl~G~ 62 (291)
T 3qyj_A 12 TTEARINLVKA---G----H---GAPLLLLHGYPQTHV-----------MWH----KIAPL-LANNFTVVA---TDLRGY 62 (291)
T ss_dssp CSSCEEEEEEE---C----C---SSEEEEECCTTCCGG-----------GGT----TTHHH-HTTTSEEEE---ECCTTS
T ss_pred cCCeEEEEEEc---C----C---CCeEEEECCCCCCHH-----------HHH----HHHHH-HhCCCEEEE---EcCCCC
Confidence 47888876543 1 1 356888999753221 111 11223 457899999 566688
Q ss_pred CCcccch-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC----
Q 002164 727 GDEEAND-------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN---- 795 (958)
Q Consensus 727 G~~~~~~-------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~---- 795 (958)
|.+.... .......+|+.+.++.+ + .+++.++||||||.+++.++.++|++++++|++++...
T Consensus 63 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~ 136 (291)
T 3qyj_A 63 GDSSRPASVPHHINYSKRVMAQDQVEVMSKL---G---YEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMY 136 (291)
T ss_dssp TTSCCCCCCGGGGGGSHHHHHHHHHHHHHHT---T---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHH
T ss_pred CCCCCCCCCccccccCHHHHHHHHHHHHHHc---C---CCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhh
Confidence 8775432 12344455655554432 2 35899999999999999999999999999998864210
Q ss_pred -CCC--------------CCCCccc----cc--------------c-hh------------hhcH-------HHHHhcC-
Q 002164 796 -RTL--------------TPFGFQN----ED--------------R-TL------------WEAT-------STYVEMS- 821 (958)
Q Consensus 796 -~~~--------------~~~~~~~----~~--------------~-~~------------~~~~-------~~~~~~s- 821 (958)
... .+..... .. . .. +..+ ..|....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T 3qyj_A 137 RTTDQEFATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAAT 216 (291)
T ss_dssp HTCCHHHHHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTT
T ss_pred hcchhhhhHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccc
Confidence 000 0000000 00 0 00 0000 0011100
Q ss_pred ------cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 822 ------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 822 ------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
......++++|+|+++|++|...+ .... .+..+.....++..+++ +||.+ ..++...+.+.|.+||.
T Consensus 217 ~~~~~~~~~~~~~i~~P~Lvi~G~~D~~~~--~~~~---~~~~~~~~~~~~~~~~~-~GH~~-~~E~P~~v~~~i~~fL~ 289 (291)
T 3qyj_A 217 IDLEHDELDMKQKISCPVLVLWGEKGIIGR--KYDV---LATWRERAIDVSGQSLP-CGHFL-PEEAPEETYQAIYNFLT 289 (291)
T ss_dssp HHHHHHHTTTTCCBCSCEEEEEETTSSHHH--HSCH---HHHHHTTBSSEEEEEES-SSSCH-HHHSHHHHHHHHHHHHH
T ss_pred cchhhcchhcCCccccceEEEecccccccc--hhhH---HHHHHhhcCCcceeecc-CCCCc-hhhCHHHHHHHHHHHHh
Confidence 011346789999999999996432 1111 12223333456777787 79976 46778888899999986
Q ss_pred H
Q 002164 896 K 896 (958)
Q Consensus 896 ~ 896 (958)
+
T Consensus 290 ~ 290 (291)
T 3qyj_A 290 H 290 (291)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-10 Score=139.92 Aligned_cols=239 Identities=12% Similarity=0.139 Sum_probs=152.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|++.. ++......+.+ +..
T Consensus 11 ~V~~l~~s~dg~~latg~~d---------------------------------g~I~vwd~~~-~~~~~~~~l~~--h~~ 54 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD---------------------------------KTIKIFEVEG-ETHKLIDTLTG--HEG 54 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT---------------------------------TEEEEEEEET-TEEEEEEEECC--CSS
T ss_pred eeEEEEECCCCCeEEEEECC---------------------------------CcEEEEecCC-CCCccceeccC--CcC
Confidence 56788999999999988765 4789999853 11112233333 334
Q ss_pred cccceeecCC--CCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecC--CeEEEEEec
Q 002164 190 KLNFVTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNN--STLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspD--G~~l~~~~~ 263 (958)
.+....|+|+ |+.|+.... ...|.+|++.+++...+ ...... .+..++|+|+ |+.|++..
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~---------Dg~I~vwd~~~~~~~~~~~~~~h~~----~V~~v~~sp~~~~~~l~sgs- 120 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSY---------DGKVLIWKEENGRWSQIAVHAVHSA----SVNSVQWAPHEYGPLLLVAS- 120 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEET---------TSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEE-
T ss_pred ceEEEEecCCCCCCEEEEEeC---------CCeEEEEECCCCcccccccccCCCC----CeEEEEECCCCCCCEEEEEe-
Confidence 7899999998 988888652 55788888888752222 221222 2779999999 88888762
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC---eeeecCCC-ccccccc
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG---TVKEIGPP-AVYTSLD 338 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g---~~~~l~~~-~~~~~~~ 338 (958)
..+.|.++++ ++ ....+... ..+..+.
T Consensus 121 ------------------------------------------------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 121 ------------------------------------------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp ------------------------------------------------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred ------------------------------------------------CCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 2245777777 44 22233333 6778899
Q ss_pred cCC-------------CCcEEEEEeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcce
Q 002164 339 PSP-------------DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 339 ~Sp-------------DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
|+| ||+.|+..+.+ +.|.+||+.++. ...+.... .....+..
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~d-------------g~I~iwd~~~~~~~~~~~~~~~----------~h~~~V~~ 209 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLE----------GHSDWVRD 209 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETT-------------SCEEEEEEETTTTEEEEEEEEC----------CCSSCEEE
T ss_pred ecCcccccccccccCCCCCEEEEEECC-------------CeEEEEeccCCcccceeeeeec----------CCCCcEEE
Confidence 999 68888887743 489999997542 12221111 11245678
Q ss_pred eeeecC---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC---ceEE---EeeccccCceeeecCCceEEEEE
Q 002164 404 INWRSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEIL---HKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 404 ~~~spD---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l---~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
+.|+|| |+.++.. +..+.|.+|++ ..+. ...+ ......+..++|+|||+.|+..+
T Consensus 210 l~~sp~~~~~~~l~s~-------------s~Dg~I~iwd~---~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 210 VAWSPTVLLRSYLASV-------------SQDRTCIIWTQ---DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp EEECCCCSSSEEEEEE-------------ESSSCEEEEEE---SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred EEeccCCCCCCEEEEE-------------ecCCEEEEecC---CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 999999 6766652 44567888886 2221 1111 22445677899999999988775
Q ss_pred eccccceEEEEEc
Q 002164 475 WYKTRRTRTWVIS 487 (958)
Q Consensus 475 ~~~~~~~~l~~~~ 487 (958)
..+. ..+|.++
T Consensus 274 ~Dg~--I~vwd~~ 284 (753)
T 3jro_A 274 GDNK--VTLWKEN 284 (753)
T ss_dssp SSSC--EECCBCC
T ss_pred CCCE--EEEEecC
Confidence 4332 4455443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-08 Score=110.27 Aligned_cols=280 Identities=12% Similarity=0.119 Sum_probs=163.3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
.+...||+++ .||... ...|++||+++|+..++...... ...+..++|+|||+.|+...
T Consensus 28 ~~~l~WS~~~-~lAvg~----------D~tV~iWd~~tg~~~~~~~~~~~--~~~V~~v~~~~~~~~l~sgs-------- 86 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGT-------- 86 (318)
T ss_dssp CBCEEECTTS-EEEEEE----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEE--------
T ss_pred ceEEEECCCC-EEEEEe----------CCEEEEEECCCCCEEEEEEecCC--CCeEEEEEECCCCCEEEEEE--------
Confidence 4568999987 666643 45799999999987665432221 11267899999999998762
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCccccccccCCCCcEEEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....|.++++ +++.. .+... ......++++++.++.
T Consensus 87 -----------------------------------------~Dg~v~iw~~~~~~~~~~~~~h-~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 87 -----------------------------------------SSAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSYILSS 124 (318)
T ss_dssp -----------------------------------------TTSEEEEEETTTTEEEEEEECC-SSCEEEEEEETTEEEE
T ss_pred -----------------------------------------CCCcEEEeecCCceeEEEecCc-cceEEEeecCCCEEEE
Confidence 2245777787 66543 33322 1223456777887776
Q ss_pred EeecCCccccccCCCCCceeEEEeccCce--EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
.+.. +.+.+|+..... ...+..+. .......|+++|+.++..
T Consensus 125 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~---------- 168 (318)
T 4ggc_A 125 GSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRHLASG---------- 168 (318)
T ss_dssp EETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSEEEEE----------
T ss_pred EecC-------------CceEeeecCCCceeEEEEcCcc-------------CceEEEEEcCCCCEEEEE----------
Confidence 6533 366677766432 22222211 334578899999877652
Q ss_pred cccccCCeEEEEeCCCCCCCC----ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEG----PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~----~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
+..+.|.+|++ ..+.. ..........+..+.|+|++..+++....... ..+.+.+.... ...... ..
T Consensus 169 ---~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lwd~~~~--~~~~~~-~~ 239 (318)
T 4ggc_A 169 ---GNDNLVNVWPS--APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIWNVCSG--ACLSAV-DA 239 (318)
T ss_dssp ---ETTSCEEEEES--SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEEETTTC--CEEEEE-EC
T ss_pred ---ecCcceeEEEC--CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEEecccc--cccccc-cc
Confidence 44567888986 22221 12223334456678999998877665432221 23444555543 112221 11
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEee
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVAL 582 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~ 582 (958)
...+.. ..|+|+++.++..... ....|++||+.+++......+... .+.
T Consensus 240 ~~~v~~------~~~~~~~~~~~~~sg~-------------------~d~~i~iwd~~~~~~~~~l~gH~~----~V~-- 288 (318)
T 4ggc_A 240 HSQVCS------ILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGHTS----RVL-- 288 (318)
T ss_dssp SSCEEE------EEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCCSS----CEE--
T ss_pred eeeeee------eeecccccceEEEEEc-------------------CCCEEEEEECCCCcEEEEEcCCCC----CEE--
Confidence 122222 6789999988766411 112599999998887665543321 122
Q ss_pred cCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 583 MSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 583 ~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
..+|+|||+.|+.... ...+.+|++.+
T Consensus 289 -----~l~~spdg~~l~S~s~----D~~v~iWd~~~ 315 (318)
T 4ggc_A 289 -----SLTMSPDGATVASAAA----DETLRLWRCFE 315 (318)
T ss_dssp -----EEEECTTSSCEEEEET----TTEEEEECCSC
T ss_pred -----EEEEcCCCCEEEEEec----CCeEEEEECCC
Confidence 2478999986653322 24577877644
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-10 Score=120.35 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=117.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEA 745 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~ 745 (958)
.|.||++||++.... .| ......|++ .+|.|++ .|.+|+|.+.... .......+|+.+
T Consensus 38 ~p~lvllHG~~~~~~-----------~w----~~~~~~L~~~~~~~via---~Dl~GhG~S~~~~~~~~~~~~~a~dl~~ 99 (316)
T 3c5v_A 38 GPVLLLLHGGGHSAL-----------SW----AVFTAAIISRVQCRIVA---LDLRSHGETKVKNPEDLSAETMAKDVGN 99 (316)
T ss_dssp SCEEEEECCTTCCGG-----------GG----HHHHHHHHTTBCCEEEE---ECCTTSTTCBCSCTTCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCcccc-----------cH----HHHHHHHhhcCCeEEEE---ecCCCCCCCCCCCccccCHHHHHHHHHH
Confidence 478999999642211 11 123445555 3899999 6667888875431 235677888888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCCCC------------CCCCCcccc-----
Q 002164 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYNRT------------LTPFGFQNE----- 806 (958)
Q Consensus 746 av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~~~------------~~~~~~~~~----- 806 (958)
.++.+... + ++++.|+||||||.+|+.+|.+ .|+ ++++|++++..... ..+..+...
T Consensus 100 ~l~~l~~~--~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3c5v_A 100 VVEAMYGD--L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIE 175 (316)
T ss_dssp HHHHHHTT--C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHH
T ss_pred HHHHHhcc--C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHH
Confidence 88887432 1 2589999999999999999996 466 89998876421000 000000000
Q ss_pred -------cchhh----hcHHHHHh-------------------cCc--------------ccccCCCCCCEEEEeeCCCC
Q 002164 807 -------DRTLW----EATSTYVE-------------------MSP--------------FMSANKLKKPILLVHGEEDN 842 (958)
Q Consensus 807 -------~~~~~----~~~~~~~~-------------------~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (958)
..... ..+..+.. ... ...+.++++|+|+++|++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~ 255 (316)
T 3c5v_A 176 WSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDR 255 (316)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCC
T ss_pred HhhhcccccchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccc
Confidence 00000 00000000 000 00112578999999999997
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
..+ .... +.+. ...+++++|++||... .+..+.+.+.|.+||.+.
T Consensus 256 ~~~--~~~~----~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 256 LDK--DLTI----GQMQ---GKFQMQVLPQCGHAVH-EDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp CCH--HHHH----HHHT---TCSEEEECCCCSSCHH-HHSHHHHHHHHHHHHHHT
T ss_pred ccc--HHHH----HhhC---CceeEEEcCCCCCccc-ccCHHHHHHHHHHHHHhc
Confidence 643 2111 2222 2358999999999874 456778889999999764
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-10 Score=115.15 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEeccCCCCCCCCC---C--cccc
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTPF---G--FQNE 806 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~~~~~~---~--~~~~ 806 (958)
....+++.++++++.++..+ +++.++||||||.+++.++.++|. +++.+|++++.++...... . ....
T Consensus 77 ~~~~~~l~~~i~~l~~~~~~--~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~ 154 (249)
T 3fle_A 77 KENAYWIKEVLSQLKSQFGI--QQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDK 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--CEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCT
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcc
Confidence 45677888889999877433 589999999999999999998763 7999999998776432100 0 0001
Q ss_pred cchhhhcHHHHHhc-CcccccCCCCCCEEEEeeC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCccC
Q 002164 807 DRTLWEATSTYVEM-SPFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHGY 877 (958)
Q Consensus 807 ~~~~~~~~~~~~~~-sp~~~~~~~~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H~~ 877 (958)
.+.+......|... .-...+.+.++|+|.|+|+ .|..|| ...++.+...++......+.+.+.| +.|..
T Consensus 155 ~g~p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~--~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~ 232 (249)
T 3fle_A 155 QGKPSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVS--NSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQ 232 (249)
T ss_dssp TCCBSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSB--HHHHHTHHHHSTTCSSEEEEEEEESGGGSTGG
T ss_pred cCCCcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCccc--HHHHHHHHHHHhhCCCceEEEEEeCCCCchhc
Confidence 11111111122221 1112233356899999998 799999 8888888777777777777788876 88987
Q ss_pred CCcccHHHHHHHHHHHHH
Q 002164 878 AARESIMHVLWETDRWLQ 895 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~ 895 (958)
.. ++ ..+.+.|.+||.
T Consensus 233 l~-~n-~~V~~~I~~FLw 248 (249)
T 3fle_A 233 LH-EN-KDVANEIIQFLW 248 (249)
T ss_dssp GG-GC-HHHHHHHHHHHT
T ss_pred cc-cC-HHHHHHHHHHhc
Confidence 43 33 477888888873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-08 Score=118.17 Aligned_cols=317 Identities=12% Similarity=0.032 Sum_probs=169.4
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.|||||+++.....+ +.|.++|+.. .+.....++. .+...
T Consensus 200 ~~v~~SpDGr~lyv~~~d---------------------------------g~V~viD~~~-~t~~~v~~i~---~G~~P 242 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRD---------------------------------GKVNMIDLWM-KEPTTVAEIK---IGSEA 242 (567)
T ss_dssp EEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCCEEEEEE---CCSEE
T ss_pred cceEECCCCCEEEEEcCC---------------------------------CeEEEEECCC-CCCcEeEEEe---cCCCC
Confidence 357788888887655432 3688888731 1112233332 33456
Q ss_pred cceeec----CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-------cccccceEEecCCeEEEE
Q 002164 192 NFVTWS----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 192 ~~~~wS----PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~l~~ 260 (958)
...++| |||++++.+.. ....|.++|..+.+..+......... ...+..+..|+++..+++
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~--------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred ceeEEccccCCCCCEEEEEEc--------cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 778999 79999887653 24678889988877765432211000 001335566777665554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCCccccc
Q 002164 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTS 336 (958)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~ 336 (958)
... ..++|++++. +.+ ...+........
T Consensus 315 ~~~------------------------------------------------~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 315 NVK------------------------------------------------ETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EET------------------------------------------------TTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred Eec------------------------------------------------CCCeEEEEecCCCccceeeeeeccccccC
Confidence 410 2456888887 432 222222233446
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceee-eecCCCCceE
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN-WRSDKPSTLY 415 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~-~spDG~~l~~ 415 (958)
..|+|||+++++.... .++|.++|+++++........ . ..|. -.+.+. ++||+..+++
T Consensus 347 ~~~~pdgr~~~va~~~------------sn~V~ViD~~t~kl~~~i~vg-g-~~Ph-------pg~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 347 GGLDGSHRYFITAANA------------RNKLVVIDTKEGKLVAIEDTG-G-QTPH-------PGRGANFVHPTFGPVWA 405 (567)
T ss_dssp EEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECS-S-SSBC-------CTTCEEEEETTTEEEEE
T ss_pred ceECCCCCEEEEEeCC------------CCeEEEEECCCCcEEEEEecc-C-cCCC-------CccceeeECCCCCcEEE
Confidence 7899999999888754 248999999977654432210 0 0111 113344 4788776655
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCC-----CCCceEEEeeccccCceeeecCCceEEEEEecccc---ceEEEEEc
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQ-----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR---RTRTWVIS 487 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~---~~~l~~~~ 487 (958)
..+ -..+.|.+++.++.. -+..+.+......-..+..+|||++|+.....+.. ...|.++|
T Consensus 406 t~~-----------~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 406 TSH-----------MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEB-----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred eCC-----------CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 311 123568888862211 01122232221122346789999998876422211 13577777
Q ss_pred CCCC-----CCCcEEEeccCCcccc-CCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 488 PGSK-----DVAPRILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 488 ~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
..+. ......+.-.....+- +....-++.|+|||+++++..-.. ......|.++|.++
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~----------------~~~~~~i~v~D~~t 538 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG----------------KDQESALVVVDDKT 538 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC----------------TTSCCEEEEEETTT
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC----------------CCCCCcEEEEECCC
Confidence 6543 1111222100000000 000011267999999998875211 00123688999999
Q ss_pred CceEEEec
Q 002164 562 GSKERIWE 569 (958)
Q Consensus 562 g~~~~l~~ 569 (958)
++......
T Consensus 539 ~~~~~~i~ 546 (567)
T 1qks_A 539 LELKHVIK 546 (567)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEeC
Confidence 88766554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-09 Score=118.21 Aligned_cols=268 Identities=12% Similarity=0.073 Sum_probs=151.2
Q ss_pred CcccceeecCC---CCeEEEEEeeccccCCCCCceEEEEEcCC-Ccee-eccCCCCccccccccceEEecCCeEEEEEec
Q 002164 189 AKLNFVTWSQD---GKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 189 ~~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
..+...+|+|| |+.|+... ....|.+|++.+ +... ......... +..++|+|||+.|+...
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~- 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGS---------WANDVRCWEVQDSGQTIPKAQQMHTGP----VLDVCWSDDGSKVFTAS- 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEE---------TTSEEEEEEECTTSCEEEEEEEECSSC----EEEEEECTTSSEEEEEE-
T ss_pred CceEEEEEcCCCCCceEEEEEC---------CCCcEEEEEcCCCCceeEEEeccccCC----EEEEEECcCCCEEEEEc-
Confidence 47999999999 58887754 245788888876 4432 222222222 77999999999998761
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-cccccccc--
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDP-- 339 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~-- 339 (958)
....|.++++ +++...+... ..+..+.|
T Consensus 106 ------------------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 137 (368)
T 3mmy_A 106 ------------------------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK 137 (368)
T ss_dssp ------------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEEE
T ss_pred ------------------------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEEe
Confidence 2245778888 7765555444 67888999
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
+|||+.|+..+.+ +.|.+||+..+.. ..+... . ....+.+.+..++..
T Consensus 138 ~~~~~~l~~~~~d-------------g~i~vwd~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~-- 186 (368)
T 3mmy_A 138 APNYSCVMTGSWD-------------KTLKFWDTRSSNPMMVLQLP--------------E--RCYCADVIYPMAVVA-- 186 (368)
T ss_dssp CSSCEEEEEEETT-------------SEEEEECSSCSSCSEEEECS--------------S--CEEEEEEETTEEEEE--
T ss_pred CCCCCEEEEccCC-------------CcEEEEECCCCcEEEEEecC--------------C--CceEEEecCCeeEEE--
Confidence 9999998887733 4899999985432 222211 1 122233333333332
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEE--E-eeccccCceeeecCCce----EEEEEeccccceEEEEEcCCCC
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--H-KLDLRYGGISWCDDSLA----LVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~-~~~~~~~~~~~spDg~~----l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.+.+|+. ........ . ........+.+.+++.. ++.....+. ..+|.++....
T Consensus 187 -----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~--i~i~~~~~~~~ 250 (368)
T 3mmy_A 187 -----------TAERGLIVYQL---ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR--VAIHYINPPNP 250 (368)
T ss_dssp -----------EGGGCEEEEEC---SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE--EEEEESSCSCH
T ss_pred -----------eCCCcEEEEEe---ccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc--EEEEecCCCCc
Confidence 23445777775 22221111 1 11122223444444433 554433322 44554443221
Q ss_pred CCCcEEEeccCCc------------cccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 492 DVAPRILFDRSSE------------DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 492 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
............ .+.. +.|+|||++|+....+ ..|++||+
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~sp~~~~l~s~~~d---------------------g~i~iwd~ 302 (368)
T 3mmy_A 251 -AKDNFTFKCHRSNGTNTSAPQDIYAVNG------IAFHPVHGTLATVGSD---------------------GRFSFWDK 302 (368)
T ss_dssp -HHHSEEEECSEEC----CCCEEECCEEE------EEECTTTCCEEEEETT---------------------SCEEEEET
T ss_pred -cccceeeeeeecccccccccccccceEE------EEEecCCCEEEEEccC---------------------CeEEEEEC
Confidence 011122222111 1222 7899999998877621 25999999
Q ss_pred CCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEec
Q 002164 560 NTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (958)
Q Consensus 560 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (958)
.+++.......... .+. ..+|+|||+.++.....
T Consensus 303 ~~~~~~~~~~~~~~----~v~-------~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 303 DARTKLKTSEQLDQ----PIS-------ACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TTTEEEEECCCCSS----CEE-------EEEECTTSSCEEEEECC
T ss_pred CCCcEEEEecCCCC----Cce-------EEEECCCCCeEEEEecc
Confidence 98876655443221 122 25789999887776553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-09 Score=119.44 Aligned_cols=233 Identities=9% Similarity=0.073 Sum_probs=137.7
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCC----------Cce-eeccCCCCccccccccceEEecCCe
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----------GKA-RPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~----------g~~-~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
...+...+|+|++..++++.. ....|++|++.. ... ..+..... .+..++|+|+++
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~--------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~ 194 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKT--------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPNLN 194 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEEC--------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTTST
T ss_pred CCcEEEEEECCCCCcEEEEEC--------CCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCCCC
Confidence 357899999998555555432 245688888875 122 22222222 266899999998
Q ss_pred -EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--------ee
Q 002164 257 -LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--------VK 326 (958)
Q Consensus 257 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--------~~ 326 (958)
.|+... ..+.|.++++ ++. ..
T Consensus 195 ~~l~s~~-------------------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~ 225 (430)
T 2xyi_A 195 GYLLSAS-------------------------------------------------DDHTICLWDINATPKEHRVIDAKN 225 (430)
T ss_dssp TEEEEEC-------------------------------------------------TTSCEEEEETTSCCBGGGEEECSE
T ss_pred CeEEEEe-------------------------------------------------CCCeEEEEeCCCCCCCCceeccce
Confidence 777551 1234667776 421 22
Q ss_pred ecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce----EEEeccCCccccCcccccccccCc
Q 002164 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~----~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
.+... ..+..++|+|++..++++... ++.|.+||+..+. ...+.. ....+
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~------------dg~i~i~d~~~~~~~~~~~~~~~-------------~~~~v 280 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVAD------------DQKLMIWDTRNNNTSKPSHTVDA-------------HTAEV 280 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCSCSSSCSEEEEC-------------CSSCE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeC------------CCeEEEEECCCCCCCcceeEeec-------------CCCCe
Confidence 33333 668889999955544444322 3489999998542 122211 12456
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCC-CCCceEEEeeccccCceeeecCCceEEEEEeccccc
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (958)
..+.|+|+|+.+++.. +..+.|.+|++ .. +.....+..+...+..+.|+|+++.++++...++.
T Consensus 281 ~~i~~~p~~~~~l~tg------------~~dg~v~vwd~--~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~- 345 (430)
T 2xyi_A 281 NCLSFNPYSEFILATG------------SADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR- 345 (430)
T ss_dssp EEEEECSSCTTEEEEE------------ETTSEEEEEET--TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-
T ss_pred EEEEeCCCCCCEEEEE------------eCCCeEEEEeC--CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-
Confidence 7899999999866641 34567899996 22 23345556667778889999999886666554432
Q ss_pred eEEEEEcCCCCCC----------CcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 481 TRTWVISPGSKDV----------APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 481 ~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
..||.+...+... ............+.. ++|+|+|++++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD------FSWNPNEPWIICSV 397 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE------EEECSSSTTEEEEE
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE------EEECCCCCCEEEEE
Confidence 5666655422100 111222222222333 88999999554443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-10 Score=136.50 Aligned_cols=232 Identities=12% Similarity=0.116 Sum_probs=142.1
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecC--CeEEEEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNN--STLLVCTIPL 264 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspD--G~~l~~~~~~ 264 (958)
..+..++|||||++|+.... ...|.+|++.++....+ ...... .+..++|+|+ |+.|+...
T Consensus 10 ~~V~~l~~s~dg~~latg~~---------dg~I~vwd~~~~~~~~~~~l~~h~~----~V~~l~~s~~~~~~~l~s~s-- 74 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSS---------DKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCS-- 74 (753)
T ss_dssp CCEEEECCCSSSCCEEEEET---------TTEEEEEEEETTEEEEEEEECCCSS----CEEEEEECCTTSCSEEEEEE--
T ss_pred ceeEEEEECCCCCeEEEEEC---------CCcEEEEecCCCCCccceeccCCcC----ceEEEEecCCCCCCEEEEEe--
Confidence 46889999999999988652 45677777764433222 222222 2778999988 88888762
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCC-cccccccc
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPP-AVYTSLDP 339 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~-~~~~~~~~ 339 (958)
..+.|.++++ +++ ...+... ..+..++|
T Consensus 75 -----------------------------------------------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~ 107 (753)
T 3jro_A 75 -----------------------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107 (753)
T ss_dssp -----------------------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------------------------------------CCCeEEEEECCCCcccccccccCCCCCeEEEEE
Confidence 1234667777 663 3344434 77889999
Q ss_pred CCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeec---------
Q 002164 340 SPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS--------- 408 (958)
Q Consensus 340 SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~sp--------- 408 (958)
+|+ |+.|+..+.+ +.|.+||+.++........ ......+..+.|+|
T Consensus 108 sp~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~~~----------~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 108 APHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIII----------DAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp CCGGGCSEEEEEETT-------------SEEEEEECCSSSCCCCEEE----------ECCSSCEEEEEECCCC-------
T ss_pred CCCCCCCEEEEEeCC-------------CcEEEEEeecCCCcceeEe----------ecCCCceEEEEecCccccccccc
Confidence 999 8988888733 4899999985522111110 11124557888999
Q ss_pred ----CCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc----eEEEeeccccCceeeecC---CceEEEEEecc
Q 002164 409 ----DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP----EILHKLDLRYGGISWCDD---SLALVYESWYK 477 (958)
Q Consensus 409 ----DG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~----~~l~~~~~~~~~~~~spD---g~~l~~~~~~~ 477 (958)
||+.++.. +..+.|.+|++ ..+... ..+..+...+..++|+|+ |+.|+....++
T Consensus 165 ~~~~d~~~l~sg-------------s~dg~I~iwd~--~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 165 NGTKESRKFVTG-------------GADNLVKIWKY--NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp --CGGGCCEEEE-------------ETTSCEEEEEE--ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred ccCCCCCEEEEE-------------ECCCeEEEEec--cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 57776663 44567888885 222222 122334566788999999 78777765444
Q ss_pred ccceEEEEEcCCCCCCCcEEE-eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 478 TRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
. .++|.+............ .......+.. ++|+|||++|+...
T Consensus 230 ~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~------l~~spdg~~l~s~s 273 (753)
T 3jro_A 230 T--CIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (753)
T ss_dssp C--EEEEEESSSSSCCBCCBSSSSCCSSCCCC------EEECTTTCCEEEEC
T ss_pred E--EEEecCCCCCCcceeEEeccCCCCCceEE------EEEcCCCCEEEEEc
Confidence 3 566666543211010111 1111222222 78999999888765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-09 Score=116.14 Aligned_cols=238 Identities=12% Similarity=0.033 Sum_probs=137.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
.|++++..+ +..+.+.. .....+..++|+|||+.++.... .......|++++.+++..+.+...... .
T Consensus 67 ~i~~~d~~~----~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~--~ 134 (333)
T 2dg1_A 67 NIFKINPET----KEIKRPFV-SHKANPAAIKIHKDGRLFVCYLG-----DFKSTGGIFAATENGDNLQDIIEDLST--A 134 (333)
T ss_dssp EEEEECTTT----CCEEEEEE-CSSSSEEEEEECTTSCEEEEECT-----TSSSCCEEEEECTTSCSCEEEECSSSS--C
T ss_pred EEEEEeCCC----CcEEEEee-CCCCCcceEEECCCCcEEEEeCC-----CCCCCceEEEEeCCCCEEEEEEccCcc--C
Confidence 688888743 44444431 12235788999999975544321 111235899999998877643221110 0
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~ 322 (958)
..+..++++|||++++....... .+ ....||+++. +
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~------------------------------------~~-------~~~~l~~~~~~~ 171 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYS------------------------------------TN-------PLGGVYYVSPDF 171 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBT------------------------------------TB-------CCEEEEEECTTS
T ss_pred CcccceEECCCCCEEEEeccccc------------------------------------cC-------CCceEEEEeCCC
Confidence 11567899999975553310000 00 2356899988 5
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCccccccccc
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
++.+.+... .....++|+|||+.|++.... .+.|++|+++ ++....+....... +.+ ..
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~-----~~~-~~ 233 (333)
T 2dg1_A 172 RTVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGATIPYY-----FTG-HE 233 (333)
T ss_dssp CCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEEEEEE-----CCS-SS
T ss_pred CEEEEeecCCCcccceEECCCCCEEEEEeCC------------CCeEEEEEecCCCcCcccccceEEEe-----cCC-CC
Confidence 666655433 445678999999988887633 2379999985 33332211000000 000 01
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc------ccCceeeecCCceEEEE
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL------RYGGISWCDDSLALVYE 473 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~------~~~~~~~spDg~~l~~~ 473 (958)
.+..+.+++||+ +++. . ...+.|++++. +++....+..... ....++|+|||+.|+++
T Consensus 234 ~~~~i~~d~~G~-l~v~-~-----------~~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 234 GPDSCCIDSDDN-LYVA-M-----------YGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEEEEEEBTTCC-EEEE-E-----------ETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCceEECCCCC-EEEE-E-----------cCCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEE
Confidence 345688999997 3331 1 12457888884 5544444433222 46778999999888887
Q ss_pred Eeccc--cceEEEEEcCCC
Q 002164 474 SWYKT--RRTRTWVISPGS 490 (958)
Q Consensus 474 ~~~~~--~~~~l~~~~~~~ 490 (958)
...+. ....||.+++..
T Consensus 298 ~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 298 SNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EECGGGTCCEEEEEEECSS
T ss_pred eCccCCCCCceEEEEeccc
Confidence 65532 236788888654
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-10 Score=116.02 Aligned_cols=154 Identities=15% Similarity=0.079 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEeccCCCCCCCC-----CCcc
Q 002164 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTP-----FGFQ 804 (958)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~~~~~~-----~~~~ 804 (958)
......+|+.++++.+.++..+ +++.++||||||.+++.++.++|+ +++++|++++.++..... +...
T Consensus 72 ~~~~~a~~l~~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~ 149 (254)
T 3ds8_A 72 TPDDWSKWLKIAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFK 149 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccc
Confidence 3567788888888998886433 599999999999999999999987 899999999876643210 0000
Q ss_pred cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCcc
Q 002164 805 NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHG 876 (958)
Q Consensus 805 ~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~--~~H~ 876 (958)
. ..........+... ...+.+ ++|+|.|||+ .|..|| ...++.+...++.....++...+.+ ++|.
T Consensus 150 ~-~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp--~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs 223 (254)
T 3ds8_A 150 K-LPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVP--TISSLATRLFMPGSAKAYIEDIQVGEDAVHQ 223 (254)
T ss_dssp S-CSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSB--HHHHTGGGGTSBTTBSEEEEEEEESGGGCGG
T ss_pred c-CCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEee--HHHHHHHHHHhhccCcceEEEEEeCCCCchh
Confidence 0 00000111111111 111222 6899999999 999999 8888887777766545566667766 6698
Q ss_pred CCCcccHHHHHHHHHHHHHHhh
Q 002164 877 YAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (958)
.. .++ .++.+.+..||.++.
T Consensus 224 ~l-~~~-~~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 224 TL-HET-PKSIEKTYWFLEKFK 243 (254)
T ss_dssp GG-GGS-HHHHHHHHHHHHTCC
T ss_pred cc-cCC-HHHHHHHHHHHHHhc
Confidence 64 233 358888999998874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-09 Score=114.29 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=150.5
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.|+|||+.|+++... . ..|++++..+ + .+.+.. ....+
T Consensus 31 eg~~~d~~g~~l~~~~~~----------------------~----------~~i~~~~~~~----~-~~~~~~--~~~~~ 71 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVR----------------------Q----------NRTWAWSDDG----Q-LSPEMH--PSHHQ 71 (296)
T ss_dssp EEEEEEGGGTEEEEEEGG----------------------G----------TEEEEEETTS----C-EEEEES--SCSSE
T ss_pred cCCeEeCCCCEEEEEeCC----------------------C----------CEEEEEECCC----C-eEEEEC--CCCCc
Confidence 478999999977776642 0 3678888743 3 444432 22356
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..++++|||+.++.. .+...|++++.++|+.+.+...........+..++++|||++++.........
T Consensus 72 ~~l~~~~dg~l~v~~---------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~--- 139 (296)
T 3e5z_A 72 NGHCLNKQGHLIACS---------HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDK--- 139 (296)
T ss_dssp EEEEECTTCCEEEEE---------TTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHC---
T ss_pred ceeeECCCCcEEEEe---------cCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccc---
Confidence 788999999854442 12468999999888876664321111001145789999998555320000000
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEe
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~ 350 (958)
..+. .....+ .....||.++.+|+.+.+... .....++|||||+.| ++.
T Consensus 140 -----------~~~~------------~~~~~~------~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~ 189 (296)
T 3e5z_A 140 -----------PEEG------------YGGEME------LPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLL-VSD 189 (296)
T ss_dssp -----------GGGS------------SCCCCC------SSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEE-EEE
T ss_pred -----------cccc------------cccccc------CCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEE-EEe
Confidence 0000 000000 013468888876766665544 555788999999998 554
Q ss_pred ecCCccccccCCCCCceeEEEecc-CceE---EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 351 IHRPYSFIVPCGRFPRQVGVWTTD-GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~l~d~~-~~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
.. .+.|++|+++ .+.. ..+... . ...+..+.+++||+ |++.
T Consensus 190 ~~------------~~~i~~~~~~~~g~~~~~~~~~~~--~----------~~~p~~i~~d~~G~-l~v~---------- 234 (296)
T 3e5z_A 190 TG------------DNATHRYCLNARGETEYQGVHFTV--E----------PGKTDGLRVDAGGL-IWAS---------- 234 (296)
T ss_dssp TT------------TTEEEEEEECSSSCEEEEEEEECC--S----------SSCCCSEEEBTTSC-EEEE----------
T ss_pred CC------------CCeEEEEEECCCCcCcCCCeEeeC--C----------CCCCCeEEECCCCC-EEEE----------
Confidence 22 3489999986 3333 122111 1 13446789999997 4442
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceee-ecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~-spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
. .+.|++++. +|.....+..... ...++| +||++.|+.++. ..||++++.+.
T Consensus 235 ---~-~~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~ 287 (296)
T 3e5z_A 235 ---A-GDGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVR 287 (296)
T ss_dssp ---E-TTEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCC
T ss_pred ---c-CCeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEcccc
Confidence 1 456888984 5555555554444 777889 589998888753 25999998774
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-08 Score=109.30 Aligned_cols=282 Identities=13% Similarity=0.067 Sum_probs=146.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.++++|..+ + .....+ +.+... .++|||||++|+.+...... ..+.....|.++|+++++...-.......
T Consensus 31 ~~v~v~D~~t-~--~~~~~i---~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTN-G--KFLGMV---PTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTT-C--CEEEEE---ECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCC-C--eEEEEe---cCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 3688988743 2 112223 233334 88999999998886532100 01122456999999887764332211100
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. ......++++|||++|+++... ....|.++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~-----------------------------------------------~~~~v~v~ 136 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNAS-----------------------------------------------PATSIGIV 136 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEES-----------------------------------------------SSEEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCC-----------------------------------------------CCCeEEEE
Confidence 0 0014578999999999976100 12457788
Q ss_pred Ec-CCeee-e-cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEE-EeccCCccccCcccc
Q 002164 320 SL-DGTVK-E-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVR-ELCDLPLAEDIPIAF 394 (958)
Q Consensus 320 ~~-~g~~~-~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~-~l~~~~~~~~~p~~~ 394 (958)
|+ +++.. . +..++ ...+.+.|+|+..++.... ++.+.+++.+. +... ........+
T Consensus 137 d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~------------dg~~~~v~~~~~g~~~~~~~~~~~~~------ 197 (361)
T 2oiz_A 137 DVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICG------------DGGLLTINLGEDGKVASQSRSKQMFS------ 197 (361)
T ss_dssp ETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEET------------TSSEEEEEECTTSSEEEEEECCCCSC------
T ss_pred ECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECC------------CCcEEEEEECCCCcEeeeccccceEc------
Confidence 88 66433 3 32111 1113356666433333222 12454555532 2221 111000000
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------------ccccCce
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------------DLRYGGI 461 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------------~~~~~~~ 461 (958)
.......+.++|||..+++. ...+.+++++. .++....+... ......+
T Consensus 198 --~~~~~~~~~~~~~g~~~~~~-------------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 198 --VKDDPIFIAPALDKDKAHFV-------------SYYGNVYSADF---SGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp --TTTSCBCSCCEECSSEEEEE-------------BTTSEEEEEEC---SSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred --CCCCceEEEecccCCEEEEE-------------eCCCeEEEEEe---cCCCceecccccccCccccccccccCCeeEE
Confidence 00112234568888777663 33457889985 44443332210 0111237
Q ss_pred eeecCCceEEEEEeccc-------cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCC
Q 002164 462 SWCDDSLALVYESWYKT-------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (958)
Q Consensus 462 ~~spDg~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 534 (958)
+++|||++++.....++ ....|+++|+.+. +......... .++ +.|||||++|+...
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~--p~~------ia~spdg~~l~v~n------ 323 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD--ALS------MTIDQQRNLMLTLD------ 323 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT--CCE------EEEETTTTEEEEEC------
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC--eeE------EEECCCCCEEEEeC------
Confidence 89999998876643111 1247999999885 2222221111 232 88999999765432
Q ss_pred CcEEEEccCCCCCCCCCCeEEEEECCCC--ceEEE
Q 002164 535 GTYILLNGNGATPEGNIPFLDLFDINTG--SKERI 567 (958)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~dl~~g--~~~~l 567 (958)
. ..|.+||++++ +....
T Consensus 324 ---------------~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 324 ---------------G-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp ---------------S-SCEEEEECSSSSCEEEEE
T ss_pred ---------------C-CeEEEEECCCCcceeeEE
Confidence 0 25999999998 55433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-08 Score=108.80 Aligned_cols=282 Identities=12% Similarity=0.009 Sum_probs=150.6
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCCceEEEEEcCCCceeeccCCCC-c
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPD-I 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~~~~~g~~~~lt~~~~-~ 240 (958)
+.+++.|..+ + ....++ +.+... .+.+||||++|+.+...... ..+.....|.++|+++++...-...+. .
T Consensus 59 ~~V~ViD~~t-~--~v~~~I---~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEA-G--RVIGMI---DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTT-T--EEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCC-C--eEEEEE---ECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 3788888743 1 122233 223333 49999999998886531100 001124569999999987654332221 0
Q ss_pred c--ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 241 Y--LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 241 ~--~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
. .......++++|||++++++... ....+.+
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~~-----------------------------------------------~~~~VsV 164 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQFS-----------------------------------------------PAPAVGV 164 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECS-----------------------------------------------SSCEEEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEcC-----------------------------------------------CCCeEEE
Confidence 0 00014478999999999976100 1235778
Q ss_pred EEc-CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccc
Q 002164 319 VSL-DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (958)
Q Consensus 319 ~~~-~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~ 388 (958)
+|+ +++. ..+.-+ +.-..++.++||+.+++..... +++ + +... .+.. .+
T Consensus 165 ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~------------g~v-~-~~~~----~~~~---~~ 223 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE------------GTP-E-ITHT----EVFH---PE 223 (386)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS------------SCC-E-EEEC----CCCS---CT
T ss_pred EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCC------------CeE-E-Eeec----ceec---cc
Confidence 888 6643 233211 1111236678887766654221 122 1 1000 0000 00
Q ss_pred cCcccccccccCcceeeee-cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------------
Q 002164 389 DIPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL------------- 454 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~------------- 454 (958)
..|. ...+.|. +||+ ++|. +..+.+|++|. .++..+.+...
T Consensus 224 ~~~~--------~~~~~~~~~dG~-~~~v-------------s~~g~V~v~d~---~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 224 DEFL--------INHPAYSQKAGR-LVWP-------------TYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp TSCB--------CSCCEEETTTTE-EEEE-------------BTTSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEE
T ss_pred cccc--------cccceeEcCCCc-EEEE-------------eCCCEEEEEEC---CCCcceeecceecccccccccccc
Confidence 0111 1124564 6775 3442 33567999995 55544333111
Q ss_pred ccccCceeeecCCceEEEEEecc------ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 455 DLRYGGISWCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
......+++++|+++|+.....+ ....+||++|+.+.+......... ..++ +.+|+||+.++|..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~------lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDS------INVSQDEKPLLYAL 349 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECE------EEECSSSSCEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---Ccce------EEECCCCCeEEEEE
Confidence 11233478899999998875421 123689999999863222222221 1222 78999998666665
Q ss_pred eeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
+. ....|.++|..+++..+-....+
T Consensus 350 n~-------------------~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 350 ST-------------------GDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEEECCCC
T ss_pred cC-------------------CCCeEEEEECCCCcEEEEecCCC
Confidence 31 11259999999998776655443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-09 Score=114.82 Aligned_cols=134 Identities=9% Similarity=0.013 Sum_probs=80.3
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
.+.+++||+.++|... .+.++++|..++..+.+...+..............+...+.++|||+++++
T Consensus 269 ~~~~~~dg~~~~~~s~-------------~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTY-------------TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCEECTTTCEEEEEBT-------------TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred EeeecCCCCEEEEEeC-------------CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 4567999999999873 238999999876554433222110000000111133345789999999888
Q ss_pred EEEec-cCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 416 WAETQ-DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 416 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..... ++.. ....+.|.++|. ...+....+. .......+.|+|||+.++|..+... ..|.++|+.+.
T Consensus 336 a~~~~~~gth----k~~s~~VsVID~--~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s--~~VsVID~~t~ 403 (426)
T 3c75_H 336 LVDQRDEWKH----KAASRFVVVLNA--ETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGT--QTLHIYDAATG 403 (426)
T ss_dssp EEEECCTTCT----TSCEEEEEEEET--TTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTC
T ss_pred Eecccccccc----cCCCCEEEEEEC--CCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCC--CeEEEEECCCC
Confidence 64321 1100 012357999996 2333334443 2234667899999996777777543 46999999885
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-09 Score=112.64 Aligned_cols=270 Identities=12% Similarity=0.079 Sum_probs=142.3
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC-----
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD----- 187 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~----- 187 (958)
.+.+||||+++...... .+.. .++.....|.++|..+ + .....+. .+.
T Consensus 82 ~va~spDG~~lyVan~~--------------------~~r~---~~G~~~~~VsviD~~t-~--~v~~~I~-v~~g~r~~ 134 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTV--------------------FSRI---ARGERTDYVEVFDPVT-L--LPTADIE-LPDAPRFL 134 (386)
T ss_dssp EEEECTTSSCEEEEEEE--------------------EEET---TEEEEEEEEEEECTTT-C--CEEEEEE-ETTCCCCC
T ss_pred cEEECCCCCEEEEEccc--------------------cccc---ccCCCCCEEEEEECCC-C--eEEEEEE-CCCccccc
Confidence 48999999998776531 0000 0111124678888744 1 2223332 111
Q ss_pred -CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccc--cc-cceEEecCCeEEEEEec
Q 002164 188 -GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA--IF-DNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 188 -~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~--~~-~~~~wspDG~~l~~~~~ 263 (958)
+.......+||||++|+.... .....|.++|+++++...-...+...... .. ..++.++||+++++...
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~-------~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQF-------SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEEC-------SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cCCCCceEEEcCCCCEEEEEEc-------CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC
Confidence 224667899999999887642 12568999999998765443322210000 00 12356677776665511
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC--cccccccc-C
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDP-S 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~--~~~~~~~~-S 340 (958)
.. ..+ ....+ ..+... .....+.| .
T Consensus 208 ~~------------------------------------------------g~v-~~~~~---~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 208 TE------------------------------------------------GTP-EITHT---EVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp SS------------------------------------------------SCC-EEEEC---CCCSCTTSCBCSCCEEET
T ss_pred CC------------------------------------------------CeE-EEeec---ceeccccccccccceeEc
Confidence 00 001 00001 011111 11223456 4
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
+||+ ++|.+. .++++++|+.+...+.+..................+...+.++||++++++.....
T Consensus 236 ~dG~-~~~vs~-------------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 236 KAGR-LVWPTY-------------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTTE-EEEEBT-------------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred CCCc-EEEEeC-------------CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 7885 445552 34899999987654443322110000000001113445688899999988864322
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
..+. .....+.|+++|+ .+++. +.+. ......++.+|+||+.++|..+... ..|.++|..++
T Consensus 302 ~~~~---hk~~~~~V~viD~---~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~--~~VsViD~~t~ 364 (386)
T 3sjl_D 302 DEWR---HKTASRFVVVLDA---KTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESG 364 (386)
T ss_dssp CTTC---TTSCEEEEEEEET---TTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTT--TEEEEEETTTC
T ss_pred cccc---cCCCCCEEEEEEC---CCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 1100 0122357999996 44443 3443 3335678999999987777776544 46899999885
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-10 Score=121.20 Aligned_cols=199 Identities=19% Similarity=0.113 Sum_probs=114.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.||++||..... ++..| ......| ..+|.|+. ++.+|+|.+...........+|+.+.
T Consensus 67 ~~~lvllhG~~~~~---------~~~~~----~~~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~a~~~~~~--- 126 (300)
T 1kez_A 67 EVTVICCAGTAAIS---------GPHEF----TRLAGAL-RGIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQADA--- 126 (300)
T ss_dssp SSEEEECCCSSTTC---------STTTT----HHHHHHT-SSSCCBCC---CCCTTSSTTCCBCSSHHHHHHHHHHH---
T ss_pred CCeEEEECCCcccC---------cHHHH----HHHHHhc-CCCceEEE---ecCCCCCCCCCCCCCHHHHHHHHHHH---
Confidence 68899999964211 00111 1222223 35799998 56677777654433344555554433
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccCCCCCCCC---C-------Cccccc----chhhh
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP---F-------GFQNED----RTLWE 812 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~~~~~~~---~-------~~~~~~----~~~~~ 812 (958)
+.+. .+.+++.++|||+||.+++.++.+.| ++++++|++++........ + .+.... .....
T Consensus 127 l~~~--~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (300)
T 1kez_A 127 VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLT 204 (300)
T ss_dssp HHHH--CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHH
T ss_pred HHHh--cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHH
Confidence 3332 23468999999999999999999987 4899999988754321100 0 000000 00000
Q ss_pred cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002164 813 ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (958)
Q Consensus 813 ~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~ 892 (958)
....+...-......++++|+|+++|+ |..++ +.. ..+.+ .....++++++|+ +|.....+....+.+.|.+
T Consensus 205 ~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~--~~~-~~~~~---~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~ 276 (300)
T 1kez_A 205 ALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGP--WPD-DSWKP---TWPFEHDTVAVPG-DHFTMVQEHADAIARHIDA 276 (300)
T ss_dssp HHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSC--CCS-SCCSC---CCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCC--Ccc-cchhh---hcCCCCeEEEecC-CChhhccccHHHHHHHHHH
Confidence 001111111112346789999999995 66665 433 22211 1123578999999 9987533666778888888
Q ss_pred HHHHhh
Q 002164 893 WLQKYC 898 (958)
Q Consensus 893 fl~~~l 898 (958)
||.+..
T Consensus 277 fl~~~~ 282 (300)
T 1kez_A 277 WLGGGN 282 (300)
T ss_dssp HHTCC-
T ss_pred HHHhcc
Confidence 887654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-09 Score=113.96 Aligned_cols=236 Identities=11% Similarity=-0.004 Sum_probs=135.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++|+|||+ |+++.. ....|++++.++++.+.+....... +..++|+|||++++..... .
T Consensus 46 ~~~~~~~~~~g~-l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~----~~~i~~~~dg~l~v~~~~~--~-- 108 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGD--F-- 108 (333)
T ss_dssp CEEEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTT--S--
T ss_pred cccCcEECCCCC-EEEEEC--------CCCEEEEEeCCCCcEEEEeeCCCCC----cceEEECCCCcEEEEeCCC--C--
Confidence 457899999998 555431 2458999999998887765222221 6689999999866654100 0
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCC--C-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGP--P-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~--~-~~~~~~~~SpDGk 344 (958)
. ....|++++. ++..+. +.. . ..+..+.++|||+
T Consensus 109 ----------------------------------~-------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 109 ----------------------------------K-------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp ----------------------------------S-------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred ----------------------------------C-------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence 0 1235888988 665542 221 1 4466789999997
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.++....... ......|+.++.+++..+.+.... ..+..+.|+|||+.+++..
T Consensus 148 l~v~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~dg~~l~v~~------- 200 (333)
T 2dg1_A 148 FYFTDFRGYS-------TNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVTE------- 200 (333)
T ss_dssp EEEEECCCBT-------TBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEEE-------
T ss_pred EEEEeccccc-------cCCCceEEEEeCCCCEEEEeecCC-------------CcccceEECCCCCEEEEEe-------
Confidence 5443321100 011246888887766555543210 1235789999999877631
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEE-----eec--cccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILH-----KLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~-----~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
...+.|++++.. .++.....+. ... .....+++++||+ |+++...+ ..|+++++++. ...
T Consensus 201 -----~~~~~i~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~---~~v~~~d~~g~---~~~ 267 (333)
T 2dg1_A 201 -----TTANRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ---GRVLVFNKRGY---PIG 267 (333)
T ss_dssp -----GGGTEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT---TEEEEECTTSC---EEE
T ss_pred -----CCCCeEEEEEec-CCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCC---CEEEEECCCCC---EEE
Confidence 224578888851 1233332221 111 2345588999997 33333222 35888888542 222
Q ss_pred EeccCCc------cccCCCCCCceEeccCCceEEEEee
Q 002164 498 LFDRSSE------DVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 498 ~~~~~~~------~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
....... .... +.|+|||+.|++...
T Consensus 268 ~~~~~~~~~g~~~~~~~------~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTH------PQFIPGTNQLIICSN 299 (333)
T ss_dssp EEECTTGGGTCSCBCCE------EEECTTSCEEEEEEE
T ss_pred EEEcCCCccccccCcce------EEECCCCCEEEEEeC
Confidence 2222111 1111 778999988877764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-09 Score=122.14 Aligned_cols=199 Identities=9% Similarity=-0.036 Sum_probs=116.6
Q ss_pred CcccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCC---Ccee--eccCCCCccccccccceEEecCCeEEEEEe
Q 002164 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDT---GKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 189 ~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~---g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (958)
..+...+|+| ||+.|+... ....|.+|++.+ +... .++..... .+..++|+||++.|+...
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGS---------DQGVIKIWNLKEIIVGEVYSSSLTYDCSS----TVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEE---------TTSEEEEEEHHHHHTTCCCSCSEEEECSS----CEEEEEECTTSSEEEEEE
T ss_pred CceEEEEECCCCCCEEEEec---------CCceEEEeECcccccCcccceeeeccCCC----CEEEEEEeCCCCEEEEEe
Confidence 4689999999 999998865 256788888876 4321 11111121 277999999999998762
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCeeeecC-----------
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIG----------- 329 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~l~----------- 329 (958)
.+ +.-.||.++. +|+.....
T Consensus 131 ~d-----------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 131 KD-----------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp TT-----------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred CC-----------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 11 1112333321 22111110
Q ss_pred ---CCcccccc--ccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcce
Q 002164 330 ---PPAVYTSL--DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 330 ---~~~~~~~~--~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
....+..+ .++|||+.|+..+.+ +.|.+||+.++.. ..+...+ ....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~ 219 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNL-------------SRVIIFDIRTLERLQIIENSP-----------RHGAVSS 219 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETT-------------SEEEEEETTTCCEEEEEECCG-----------GGCCEEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCCCeeeEEEccCC-----------CCCceEE
Confidence 11122222 277899988888743 4899999986543 3333211 1135678
Q ss_pred eeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc-eEEE-eeccccCce----eeecCCceEEEEEecc
Q 002164 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH-KLDLRYGGI----SWCDDSLALVYESWYK 477 (958)
Q Consensus 404 ~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~-~~~~~~~~~----~~spDg~~l~~~~~~~ 477 (958)
+.|+|||+.++.. +..+.|.+||+ ..++. ..+. .....+..+ .|+||++.|+....+
T Consensus 220 ~~~s~~~~~l~s~-------------~~dg~i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d- 282 (437)
T 3gre_A 220 ICIDEECCVLILG-------------TTRGIIDIWDI---RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK- 282 (437)
T ss_dssp EEECTTSCEEEEE-------------ETTSCEEEEET---TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-
T ss_pred EEECCCCCEEEEE-------------cCCCeEEEEEc---CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC-
Confidence 9999999988763 44567899996 33322 2222 233355666 556677777765433
Q ss_pred ccceEEEEEcCCCC
Q 002164 478 TRRTRTWVISPGSK 491 (958)
Q Consensus 478 ~~~~~l~~~~~~~~ 491 (958)
..|.++++.++
T Consensus 283 ---g~i~iwd~~~~ 293 (437)
T 3gre_A 283 ---TFLTIWNFVKG 293 (437)
T ss_dssp ---EEEEEEETTTT
T ss_pred ---CcEEEEEcCCC
Confidence 34666676654
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=112.55 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEeccCCCCCCCCCCcccccchh
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 810 (958)
+....+++.++++++.++..+ +++.++||||||.++..++.++ |++++.+|++++.++...... . .....
T Consensus 77 ~~~~a~~l~~~~~~l~~~~~~--~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~--~-~~~~~ 151 (250)
T 3lp5_A 77 IDKQAVWLNTAFKALVKTYHF--NHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST--T-AKTSM 151 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC--SEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCS--S-CCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccccc--c-ccCHH
Confidence 456688899999999887433 6899999999999999999876 678999999988765432110 0 00111
Q ss_pred hhcHHHHHhcCcccccCCCCCCEEEEeeC----CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC--CCCccCCCcccHH
Q 002164 811 WEATSTYVEMSPFMSANKLKKPILLVHGE----EDNNSGTLTMQSDRFFNALKGHGALCRLVILP--FESHGYAARESIM 884 (958)
Q Consensus 811 ~~~~~~~~~~sp~~~~~~~~~P~Lii~G~----~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p--~~~H~~~~~~~~~ 884 (958)
+ ..+... ...+.+ ++|+|+|+|+ .|..|| ...++.+...++......+.+.+. +++|... .++ .
T Consensus 152 ~---~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp--~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l-~e~-~ 221 (250)
T 3lp5_A 152 F---KELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVP--YNSVNYGKYIFQDQVKHFTEITVTGANTAHSDL-PQN-K 221 (250)
T ss_dssp H---HHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCC--HHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCH-HHH-H
T ss_pred H---HHHHhc--cccCCC-CceEEEEEecCCCCCCceee--HHHHHHHHHHhcccccceEEEEEeCCCCchhcc-hhC-H
Confidence 1 112111 112222 6899999999 999998 777777766666544445555555 4669874 233 2
Q ss_pred HHHHHHHHHHH
Q 002164 885 HVLWETDRWLQ 895 (958)
Q Consensus 885 ~~~~~i~~fl~ 895 (958)
.+.+.|.+||.
T Consensus 222 ~v~~~I~~FL~ 232 (250)
T 3lp5_A 222 QIVSLIRQYLL 232 (250)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 56666666654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=132.74 Aligned_cols=274 Identities=8% Similarity=-0.031 Sum_probs=152.6
Q ss_pred CCCCceecCC------CCEEEEEecCCCCCchhcc--------------------cccceeeceeecCCCCCccceeeEe
Q 002164 110 PLPALSFSPQ------RDKILFLKRRALPPLEELA--------------------RPEEKLAGLRIDGKCNTRSRMSFYT 163 (958)
Q Consensus 110 ~~~~~~~SPD------G~~laf~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (958)
.+..++|||+ |+.||..+.+....++++. .+...+..+.+.+.. ....++.++
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 4567889987 6789888776444444332 222334455555532 344455568
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccce--eecCCC-CeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCC
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV--TWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPD 239 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~--~wSPDG-~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~ 239 (958)
.|.+|++.+ +. .....+..+ ...+..+ .|+||| +.||..+ ....|.+||+.+++... +.....
T Consensus 288 tV~lWD~~~-~~-~~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S---------~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 288 FVAEFDLTD-PE-VPSFYDQVH--DSYILSVSTAYSDFEDTVVSTVA---------VDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp EEEEEETTB-CS-SCSEEEECS--SSCEEEEEEECCTTSCCEEEEEE---------TTSEEEEECGGGHHHHCEEEEECS
T ss_pred EEEEEECCC-CC-CceEEeecc--cccEEEEEEEcCCCCCeEEEEec---------cCCeEEEEECCCCCcccccccccc
Confidence 899999964 11 122234443 2467777 689998 6666654 25688888987765322 111111
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
.. .+..++|+|||+.|+.+. ....+.++
T Consensus 355 ~~---~v~~v~fsp~~~~l~s~~-------------------------------------------------~d~tv~lw 382 (524)
T 2j04_B 355 GS---NLVPVVYCPQIYSYIYSD-------------------------------------------------GASSLRAV 382 (524)
T ss_dssp CC---SCCCEEEETTTTEEEEEC-------------------------------------------------SSSEEEEE
T ss_pred cC---cccceEeCCCcCeEEEeC-------------------------------------------------CCCcEEEE
Confidence 00 145789999999887651 12246677
Q ss_pred Ec-CCe-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccc
Q 002164 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (958)
Q Consensus 320 ~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~ 396 (958)
++ ++. ...+... ..+..++|||||+.|+..+. ++.+.+|++.++. +..+..... + .
T Consensus 383 d~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~-------------Dgtv~lwd~~~~~---~~~~~~~~~---~--~ 441 (524)
T 2j04_B 383 PSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA-------------DGSLIITNAARRL---LHGIKNSSA---T--Q 441 (524)
T ss_dssp ETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET-------------TTEEECCBSCSST---TTCC-----------C
T ss_pred ECcccccceeeecCCCceEEEEeCCCCCeEEEEEC-------------CCEEEEEechHhh---ccccccCcc---c--e
Confidence 77 654 2444444 67889999999999887763 3489999986532 111100000 0 0
Q ss_pred cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCc---eEEEE
Q 002164 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---ALVYE 473 (958)
Q Consensus 397 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---~l~~~ 473 (958)
....+..++|||||+.+.++ ....++.+.. +|.....+..+...+..++|+|++. .|+..
T Consensus 442 ~~~~v~~v~~sp~g~~~~~~--------------~~~~~~~~~~---~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYRID--------------SSYEVYPLTV---NDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp CCCEEEECBCCSSSCEEEEC--------------CCCCCCC----------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred eeeEEEEeccCCCCCeEEcc--------------CCceeccccc---CCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 00123467899999844331 1111222221 3445556666777899999999965 66665
Q ss_pred EeccccceEEEEEcCC
Q 002164 474 SWYKTRRTRTWVISPG 489 (958)
Q Consensus 474 ~~~~~~~~~l~~~~~~ 489 (958)
...+. .+||.++..
T Consensus 505 ~~~g~--vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAGL--LTLEYLSLE 518 (524)
T ss_dssp CTTSE--EEEEECSCC
T ss_pred ccCce--EEEEEcccc
Confidence 43333 667766543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-08 Score=113.99 Aligned_cols=284 Identities=11% Similarity=0.044 Sum_probs=165.5
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
.+++|+++|+... ....|.+|++.+++........... +..++|+|++ .|+...
T Consensus 127 ~~~~~~~~l~sgs---------~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~~~-~l~s~s------------ 180 (464)
T 3v7d_B 127 CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGG-ILVSGS------------ 180 (464)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECSTT-EEEEEE------------
T ss_pred EEEECCCEEEEEc---------CCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcCCC-EEEEEe------------
Confidence 4555788887754 2568999999988765544333322 7789999999 555441
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccC--CCCcEEEEE
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPS--PDEKYILIS 349 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~S--pDGk~l~~~ 349 (958)
..+.|.++++ +|+.. .+... ..+..++|+ +|++.|+..
T Consensus 181 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 181 -------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred -------------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE
Confidence 2345778888 77543 34333 667777777 688888877
Q ss_pred eecCCccccccCCCCCceeEEEeccCceEEEeccCCcc--------ccCcc---cccccccCcceeeeecCCCCceEEEE
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA--------EDIPI---AFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~--------~~~p~---~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
+.+ +.+.+||+.+............ ...+. ...+ ....-..++++|+.++..
T Consensus 224 s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~-- 286 (464)
T 3v7d_B 224 SRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNIVVSG-- 286 (464)
T ss_dssp ETT-------------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC--CSSCEEEEEEETTEEEEE--
T ss_pred cCC-------------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC--ccceEEEEcCCCCEEEEE--
Confidence 633 4899999985432211000000 00000 0001 011223457888777663
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
+..+.|.+||+ ..+.....+..+...+..+.|+|+|+.|+..+.++. |.++++.++ +....
T Consensus 287 -----------~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~----i~vwd~~~~--~~~~~ 347 (464)
T 3v7d_B 287 -----------SYDNTLIVWDV--AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT----IRIWDLENG--ELMYT 347 (464)
T ss_dssp -----------ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC----EEEEETTTT--EEEEE
T ss_pred -----------eCCCeEEEEEC--CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEECCCC--cEEEE
Confidence 44667999996 233333344445666788999999999887754432 555666653 33333
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccce
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~ 578 (958)
.......+.. +.|+ +++|+.... ...|.+||+.+++..........
T Consensus 348 ~~~h~~~v~~------~~~~--~~~l~s~s~---------------------dg~v~vwd~~~~~~~~~~~~~~~----- 393 (464)
T 3v7d_B 348 LQGHTALVGL------LRLS--DKFLVSAAA---------------------DGSIRGWDANDYSRKFSYHHTNL----- 393 (464)
T ss_dssp ECCCSSCEEE------EEEC--SSEEEEEET---------------------TSEEEEEETTTCCEEEEEECTTC-----
T ss_pred EeCCCCcEEE------EEEc--CCEEEEEeC---------------------CCcEEEEECCCCceeeeecCCCC-----
Confidence 3333333222 4454 566666552 12599999988765444332211
Q ss_pred eEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
.....|+++++.++... ...+.++++.+++...
T Consensus 394 -------~~~~~~~~~~~~l~~~~-----dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 394 -------SAITTFYVSDNILVSGS-----ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -------CCEEEEEECSSEEEEEE-----TTEEEEEETTTCCEEE
T ss_pred -------ccEEEEEeCCCEEEEec-----CCeEEEEECCCCcEEe
Confidence 11246788888665533 2579999998887543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-09 Score=113.98 Aligned_cols=239 Identities=9% Similarity=-0.037 Sum_probs=137.9
Q ss_pred ceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccc
Q 002164 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (958)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~ 193 (958)
.++++|++.++....+ +.|++|++.. + .....+. ...+..
T Consensus 42 ~~~~~d~~~l~sg~~D---------------------------------g~v~iwd~~~-~--~~~~~~~----~~~v~~ 81 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCED---------------------------------GALHFTQLKD-S--KTITTIT----TPNPRT 81 (343)
T ss_dssp SSSSEEEEEEEEEEET---------------------------------TEEEEEEESS-S--SCEEEEE----EECCCT
T ss_pred hhhcCCCCEEEEECCC---------------------------------CcEEEEECCC-C--cEEEEEe----cCCcee
Confidence 4567888888887765 5899999964 2 2222332 123555
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eeccCCCCccccccccceEEec--CCeEEEEEecCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~~~~~~~ 270 (958)
..|+|+ ++.........--+....+.+++..+++. +........ .+..++|+| +|+.|+...
T Consensus 82 ~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~s-------- 146 (343)
T 3lrv_A 82 GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN----EIIYMYGHNEVNTEYFIWAD-------- 146 (343)
T ss_dssp TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS----CEEEEECCC---CCEEEEEE--------
T ss_pred eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC----CEEEEEcCCCCCCCEEEEEe--------
Confidence 566665 33221100000000122344556666652 222211111 267899999 999988662
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC-CC--ccccccccCCCCcEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~-~~--~~~~~~~~SpDGk~l 346 (958)
....|.++++ +++...+. .. ..+..++|+|||+.|
T Consensus 147 -----------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l 185 (343)
T 3lrv_A 147 -----------------------------------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL 185 (343)
T ss_dssp -----------------------------------------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE
T ss_pred -----------------------------------------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE
Confidence 2245778888 77654433 22 467889999999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEE--EeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR--ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~--~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+..+. ++.|.+||+.++... .+.. .+...+..+.|+|||+.|+..
T Consensus 186 asg~~-------------dg~i~iwd~~~~~~~~~~~~~------------~h~~~v~~l~fs~~g~~l~s~-------- 232 (343)
T 3lrv_A 186 ALYSP-------------DGILDVYNLSSPDQASSRFPV------------DEEAKIKEVKFADNGYWMVVE-------- 232 (343)
T ss_dssp EEECT-------------TSCEEEEESSCTTSCCEECCC------------CTTSCEEEEEECTTSSEEEEE--------
T ss_pred EEEcC-------------CCEEEEEECCCCCCCccEEec------------cCCCCEEEEEEeCCCCEEEEE--------
Confidence 87763 348999999865432 2222 012456789999999988773
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEe---eccccC--ceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRYG--GISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~~~~~~--~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+ .+.|.+||+ ..+.....+.. ....+. .++|+|+|++|+..+..++ ..+||.++...
T Consensus 233 -----~-~~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-~i~v~~~~~~~ 294 (343)
T 3lrv_A 233 -----C-DQTVVCFDL--RKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-SLTIYKFDKKT 294 (343)
T ss_dssp -----E-SSBEEEEET--TSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT-EEEEEEECTTT
T ss_pred -----e-CCeEEEEEc--CCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC-cEEEEEEcccc
Confidence 2 347899996 23332222221 223333 3999999999988765232 26777776443
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=132.42 Aligned_cols=208 Identities=16% Similarity=0.046 Sum_probs=128.2
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC-CCCCCCcc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGDEE 730 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~-~~G~G~~~ 730 (958)
+...+|.|.+.... .++|+||++|||++..+. ...+.. ........+|++|+.++|+- ..|++...
T Consensus 86 l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~--------~~~~~~---~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~ 152 (522)
T 1ukc_A 86 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENS--------NANYNG---TQVIQASDDVIVFVTFNYRVGALGFLASE 152 (522)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCC--------SCSCCC---HHHHHHTTSCCEEEEECCCCHHHHHCCCH
T ss_pred CEEEEEECCCCCCC--CCCCEEEEECCCccccCC--------ccccCc---HHHHHhcCCcEEEEEecccccccccccch
Confidence 55578899764322 348999999999765432 112211 11111125699999988873 23444332
Q ss_pred cch--hhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEEeccCCCCCCCCC
Q 002164 731 AND--RFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIARSGAYNRTLTPF 801 (958)
Q Consensus 731 ~~~--~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~~~~~~~~~~~ 801 (958)
... ..+...+.|+.+|++|++++- ..|++||.|+|+|+||.++..++... +.+|+++|+.+|.+......
T Consensus 153 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~- 231 (522)
T 1ukc_A 153 KVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTV- 231 (522)
T ss_dssp HHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCS-
T ss_pred hccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCH-
Confidence 111 123567899999999999862 36999999999999999887776653 57899999999975422211
Q ss_pred Ccccccchhhh-------------cHHHHHhcCccc---------ccCCCCCC--EEEEeeCCCCCCCCChHHHHHHHHH
Q 002164 802 GFQNEDRTLWE-------------ATSTYVEMSPFM---------SANKLKKP--ILLVHGEEDNNSGTLTMQSDRFFNA 857 (958)
Q Consensus 802 ~~~~~~~~~~~-------------~~~~~~~~sp~~---------~~~~~~~P--~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (958)
......+. ..+.+...++.. .......| .+.++...|..+. +++..+++++
T Consensus 232 ---~~~~~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l--~~~p~~~~~~ 306 (522)
T 1ukc_A 232 ---SEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLV--PDELYNAFDA 306 (522)
T ss_dssp ---GGGHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSS--CSCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCccc--CCCHHHHHhc
Confidence 00000000 011122211111 11112234 5566777787765 6778888777
Q ss_pred HHhCCCcEEEEEeCCCCccCC
Q 002164 858 LKGHGALCRLVILPFESHGYA 878 (958)
Q Consensus 858 l~~~g~~~~~~~~p~~~H~~~ 878 (958)
-+..++++-+-...+++|.+.
T Consensus 307 g~~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 307 GNFIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp TCSCCCCEEEEEETBGGGGTS
T ss_pred CCCCCCCEEEEeecchhHHhh
Confidence 666778888888899999875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.3e-09 Score=112.01 Aligned_cols=233 Identities=13% Similarity=0.040 Sum_probs=142.5
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.+.|+||++.++++... . ..|++++..+ +..+.+. .+ ..+.
T Consensus 53 gp~~~~~~~~l~~~d~~----------------------~----------~~i~~~d~~~----~~~~~~~-~~--~~v~ 93 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL----------------------E----------RELHELHLAS----GRKTVHA-LP--FMGS 93 (326)
T ss_dssp EEEEETTTTEEEEEEGG----------------------G----------TEEEEEETTT----TEEEEEE-CS--SCEE
T ss_pred CCeEeCCCCEEEEEECC----------------------C----------CEEEEEECCC----CcEEEEE-CC--Ccce
Confidence 67899999888887642 0 3688888743 4444343 22 3577
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
.+.|+|||+.++.+ ...|++++.++|+.+.+...........+..++++|||++.+.......
T Consensus 94 ~i~~~~dg~l~v~~-----------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~------ 156 (326)
T 2ghs_A 94 ALAKISDSKQLIAS-----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA------ 156 (326)
T ss_dssp EEEEEETTEEEEEE-----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC------
T ss_pred EEEEeCCCeEEEEE-----------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC------
Confidence 88999999866653 2259999999988876654322110112567889999985442210000
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEee
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
. .....||+++ +|+.+.+... .....++|||||+.|++...
T Consensus 157 -----------------------------~--------~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 157 -----------------------------E--------TGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -----------------------------C--------TTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -----------------------------C--------CCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 0 0235689998 7876665443 44567899999999988753
Q ss_pred cCCccccccCCCCCceeEEEecc--Cc-eE---EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTD--GI-FV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~--~~-~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
. .+.|++++++ ++ .. +.+...... ...+..+.+++||. +++. .
T Consensus 199 ~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~----------~~~p~gi~~d~~G~-lwva-~------- 247 (326)
T 2ghs_A 199 K------------VNRLMRVPLDARTGLPTGKAEVFIDSTGI----------KGGMDGSVCDAEGH-IWNA-R------- 247 (326)
T ss_dssp T------------TCEEEEEEBCTTTCCBSSCCEEEEECTTS----------SSEEEEEEECTTSC-EEEE-E-------
T ss_pred C------------CCEEEEEEcccccCCcccCceEEEECCCC----------CCCCCeeEECCCCC-EEEE-E-------
Confidence 2 2489999985 33 21 122111100 02235688889985 3331 1
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee-cCCceEEEEEecc
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWYK 477 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~~~ 477 (958)
...+.|++++. ++.....+......+..++|+ ||++.|+++....
T Consensus 248 ----~~~~~v~~~d~---~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 248 ----WGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ----ETTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ----eCCCEEEEECC---CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 12346888884 554444554344456778998 8998888776543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-07 Score=107.69 Aligned_cols=311 Identities=11% Similarity=0.020 Sum_probs=178.6
Q ss_pred eecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccce
Q 002164 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (958)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~ 194 (958)
.+++||++|+..+.+ +.|.+|++.+ + .....+.+ +...+...
T Consensus 124 ~~~~~g~~l~sg~~d---------------------------------g~i~vwd~~~-~--~~~~~~~~--h~~~v~~~ 165 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD---------------------------------NTLKVWSAVT-G--KCLRTLVG--HTGGVWSS 165 (445)
T ss_dssp EEEEETTEEEEEETT---------------------------------SCEEEEETTT-C--CEEEECCC--CSSCEEEE
T ss_pred EEEEcCCEEEEEECC---------------------------------CcEEEEECCC-C--cEEEEEcC--CCCCEEEE
Confidence 578889998887765 5799999854 2 23344443 23467788
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
.|+ ++.|+... ....|.+|++.+++........... +..+.|+ ++.|+...
T Consensus 166 ~~~--~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~s------------ 216 (445)
T 2ovr_B 166 QMR--DNIIISGS---------TDRTLKVWNAETGECIHTLYGHTST----VRCMHLH--EKRVVSGS------------ 216 (445)
T ss_dssp EEE--TTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred Eec--CCEEEEEe---------CCCeEEEEECCcCcEEEEECCCCCc----EEEEEec--CCEEEEEe------------
Confidence 887 55666644 2568899999988765544333322 5566774 45566541
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEEEEEee
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
..+.|.++++ +++. ..+... ..+..+.| ||+.|+..+.
T Consensus 217 -------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 217 -------------------------------------RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 2345778888 6643 333333 55666666 8888887763
Q ss_pred cCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~ 430 (958)
+ +.+.+||+.++.. ..+..+. ..+..+.| ||+.++.. +
T Consensus 258 d-------------g~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 296 (445)
T 2ovr_B 258 D-------------FMVKVWDPETETCLHTLQGHT-------------NRVYSLQF--DGIHVVSG-------------S 296 (445)
T ss_dssp T-------------SCEEEEEGGGTEEEEEECCCS-------------SCEEEEEE--CSSEEEEE-------------E
T ss_pred C-------------CEEEEEECCCCcEeEEecCCC-------------CceEEEEE--CCCEEEEE-------------e
Confidence 3 4899999986543 3332211 23345566 77776652 4
Q ss_pred cCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc---CCcccc
Q 002164 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR---SSEDVY 507 (958)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 507 (958)
..+.|.+|++ ..+.....+......+. .++++++.|+.....+ .|.++++..+ +....... ....+
T Consensus 297 ~d~~i~i~d~--~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg----~i~vwd~~~~--~~~~~~~~~~~~~~~v- 365 (445)
T 2ovr_B 297 LDTSIRVWDV--ETGNCIHTLTGHQSLTS--GMELKDNILVSGNADS----TVKIWDIKTG--QCLQTLQGPNKHQSAV- 365 (445)
T ss_dssp TTSCEEEEET--TTCCEEEEECCCCSCEE--EEEEETTEEEEEETTS----CEEEEETTTC--CEEEEECSTTSCSSCE-
T ss_pred CCCeEEEEEC--CCCCEEEEEcCCcccEE--EEEEeCCEEEEEeCCC----eEEEEECCCC--cEEEEEccCCCCCCCE-
Confidence 4567899996 23333333333333333 3445677776665333 2555566553 22332222 11111
Q ss_pred CCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec-CCcccccceeEeecCCC
Q 002164 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE-SDKEKYYETTVALMSDQ 586 (958)
Q Consensus 508 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~-~~~~~~~~~~~~~~~~~ 586 (958)
.+...++++|+.... ...|.+||+.+++..+... .........+.
T Consensus 366 -------~~~~~~~~~l~s~~~---------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~------ 411 (445)
T 2ovr_B 366 -------TCLQFNKNFVITSSD---------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVW------ 411 (445)
T ss_dssp -------EEEEECSSEEEEEET---------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEE------
T ss_pred -------EEEEECCCEEEEEeC---------------------CCeEEEEECCCCceeeeeeccccCCCCceEE------
Confidence 223335666666552 1269999999887655431 11000000112
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 587 ~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
..+|++++..++...........++++|...
T Consensus 412 -~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 -RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 2468888876666666555567788888654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-08 Score=111.24 Aligned_cols=283 Identities=11% Similarity=0.006 Sum_probs=147.0
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccc-cCCCCCceEEEEEcCCCceeeccCCC-Ccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSP-DIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~~~~~g~~~~lt~~~-~~~ 241 (958)
.|.++|+.+ + ....++ +-+... .+.+||||++|+.+...... ..+.....|.++|+.+++...-...+ ..+
T Consensus 100 ~VsVID~~t-~--~vv~~I---~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 100 QQFVIDGST-G--RILGMT---DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEETTT-T--EEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred eEEEEECCC-C--EEEEEE---ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 678888744 1 122233 223334 89999999999887531100 00112457999999998765432222 000
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. ......++++|||++|+++... ....|.++
T Consensus 173 ~~~g~~P~~~~~spDGk~lyV~n~~-----------------------------------------------~~~~VsVI 205 (426)
T 3c75_H 173 FLVGTYQWMNALTPDNKNLLFYQFS-----------------------------------------------PAPAVGVV 205 (426)
T ss_dssp CCBSCCGGGSEECTTSSEEEEEECS-----------------------------------------------SSCEEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEecC-----------------------------------------------CCCeEEEE
Confidence 0 0014578999999999987100 12458888
Q ss_pred Ec-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-Eec-cCCccccCccccc
Q 002164 320 SL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELC-DLPLAEDIPIAFN 395 (958)
Q Consensus 320 ~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~-~~~~~~~~p~~~~ 395 (958)
|+ +++.. .+.-++. ....|+|++.++.... ++++.++++..+... ..+ .... ...|.
T Consensus 206 D~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~------------dG~~~~V~~~~~~v~~~~~~~~~v-~~~p~--- 266 (426)
T 3c75_H 206 DLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCR------------DGSLARVDFADGETKVTNTEVFHT-EDELL--- 266 (426)
T ss_dssp ETTTTEEEEEEECCSE---EEEEEEETTEEEEEET------------TSSEEEEECCTTCCEEEECCCCSC-TTSCB---
T ss_pred ECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcC------------CCCEEEEECCCCcEEEEeeeeecc-CCCce---
Confidence 88 66432 3322211 1223333332222211 112333333222111 110 0000 00010
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-------------eccccCcee
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-------------LDLRYGGIS 462 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-------------~~~~~~~~~ 462 (958)
...+.+++||+.+++. ...+.++++|. .++....+.. .......++
T Consensus 267 -----~~~~~~~~dg~~~~~~-------------s~~g~V~ViD~---~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va 325 (426)
T 3c75_H 267 -----INHPAFSLRSGRLVWP-------------TYTGKIFQADL---TAEGATFRAPIEALTEAERADDWRPGGWQQTA 325 (426)
T ss_dssp -----CSCCEECTTTCEEEEE-------------BTTSEEEEEEE---CSSCEEECCCEESSCTTTGGGTEEECSSSCEE
T ss_pred -----eeEeeecCCCCEEEEE-------------eCCCcEEEEec---cCCceEEeeeeeeccccccccccccCCceeeE
Confidence 1235689999988884 23457888885 4433322211 011123478
Q ss_pred eecCCceEEEEEecc------ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCc
Q 002164 463 WCDDSLALVYESWYK------TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGT 536 (958)
Q Consensus 463 ~spDg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 536 (958)
++|||++|+...... .....|+++|+.+.+.......... ..+ +.|+|||+.++|..+.
T Consensus 326 ~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~---P~g------ia~spDg~~~lyv~n~------ 390 (426)
T 3c75_H 326 YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE---IDS------INVSQDAEPLLYALSA------ 390 (426)
T ss_dssp EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---ECE------EEECCSSSCEEEEEET------
T ss_pred EcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC---cCe------EEEccCCCEEEEEEcC------
Confidence 999999888764321 1125799999988632111111111 112 7899999955555531
Q ss_pred EEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 537 YILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 537 ~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
....|.++|+.+++..+-.
T Consensus 391 -------------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 391 -------------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp -------------TTTEEEEEETTTCCEEEEE
T ss_pred -------------CCCeEEEEECCCCCEEEEe
Confidence 1236999999999876554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-08 Score=106.34 Aligned_cols=246 Identities=10% Similarity=-0.007 Sum_probs=144.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....|+|+|||+.|+++.. ....|++++.+++ .+.+...... +..++++|||++++...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~--------~~~~i~~~~~~~~-~~~~~~~~~~-----~~~l~~~~dg~l~v~~~------- 87 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDV--------RQNRTWAWSDDGQ-LSPEMHPSHH-----QNGHCLNKQGHLIACSH------- 87 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEG--------GGTEEEEEETTSC-EEEEESSCSS-----EEEEEECTTCCEEEEET-------
T ss_pred cccCCeEeCCCCEEEEEeC--------CCCEEEEEECCCC-eEEEECCCCC-----cceeeECCCCcEEEEec-------
Confidence 4577999999998888653 2458999999988 6555432221 56889999998665430
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------ccccccccCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPD 342 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpD 342 (958)
....|++++. +|+.+.+... ..+..++++||
T Consensus 88 ------------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 125 (296)
T 3e5z_A 88 ------------------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD 125 (296)
T ss_dssp ------------------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred ------------------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence 2245888888 8876655432 23457899999
Q ss_pred CcEEEEEeecCCcc----ccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 343 EKYILISSIHRPYS----FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 343 Gk~l~~~~~~~~~~----~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|+.++..+...... .........+.|+.++.+ +..+.+.... ..+..++|+|||+.+ +. +
T Consensus 126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~gi~~s~dg~~l-v~-~ 189 (296)
T 3e5z_A 126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKPNGLAFLPSGNLL-VS-D 189 (296)
T ss_dssp SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSEEEEEECTTSCEE-EE-E
T ss_pred CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCCccEEECCCCCEE-EE-e
Confidence 98444321000000 000000112367777776 4444432211 233578999999987 42 1
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCCc---eEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCC
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVA 494 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 494 (958)
...+.|++++. ...++. ..+.. .......+++++||+ |+++. + ..|+++++++.
T Consensus 190 -----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~---~~v~~~~~~g~--- 247 (296)
T 3e5z_A 190 -----------TGDNATHRYCL--NARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--G---DGVHVLTPDGD--- 247 (296)
T ss_dssp -----------TTTTEEEEEEE--CSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--T---TEEEEECTTSC---
T ss_pred -----------CCCCeEEEEEE--CCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--C---CeEEEECCCCC---
Confidence 23457888886 112333 12221 223345789999997 44443 2 35899998752
Q ss_pred cEEEeccCCccccCCCCCCceEe-ccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 495 PRILFDRSSEDVYSDPGSPMMRR-TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
.......... +.. +.| +|||+.|+.... ..|+.+++++++.+
T Consensus 248 ~~~~~~~~~~-~~~------~~f~~~d~~~L~v~t~----------------------~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 248 ELGRVLTPQT-TSN------LCFGGPEGRTLYMTVS----------------------TEFWSIETNVRGLE 290 (296)
T ss_dssp EEEEEECSSC-CCE------EEEESTTSCEEEEEET----------------------TEEEEEECSCCBCC
T ss_pred EEEEEECCCC-cee------EEEECCCCCEEEEEcC----------------------CeEEEEEccccccc
Confidence 2222222211 221 667 689988877652 15889998877654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=110.24 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=145.8
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.|+|||+.|+|+... . +.|+.++. +| ..+.+.. .....
T Consensus 48 egp~~~~~g~~l~~~d~~----------------------~----------~~i~~~~~--~g---~~~~~~~--~~~~~ 88 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLV----------------------G----------RRVLGWRE--DG---TVDVLLD--ATAFT 88 (305)
T ss_dssp EEEEEEGGGTEEEEEETT----------------------T----------TEEEEEET--TS---CEEEEEE--SCSCE
T ss_pred cCCeEeCCCCEEEEEECC----------------------C----------CEEEEEeC--CC---CEEEEeC--CCCcc
Confidence 368999999999888653 1 25777775 23 3334432 12356
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
....|+|||+.++.. .+...|++++.+ |+.+.+...........+..+++.|||++. ++.+.- +..
T Consensus 89 ~gl~~d~dG~l~v~~---------~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~-g~~-- 154 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCE---------HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPF-GLR-- 154 (305)
T ss_dssp EEEEECTTSCEEEEE---------TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEE-EECCSG-GGS--
T ss_pred ceeeECCCCCEEEEE---------CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEE-EeCcCC-Ccc--
Confidence 778999999854442 124579999987 565555432211101114578999999744 431000 000
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (958)
...++. ....+ .....||+++. +|+.+.+. . .....++|||||+.|++.
T Consensus 155 ----------~~~~~~----------~~~~~--------~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~ 205 (305)
T 3dr2_A 155 ----------KPSQGC----------PADPE--------LAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVS 205 (305)
T ss_dssp ----------CGGGSC----------CCCCS--------SSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEE
T ss_pred ----------cccccc----------ccccc--------cCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEE
Confidence 000000 00000 02356999998 78777665 4 445678999999999887
Q ss_pred eecCCccccccCCCCCceeEEEeccCceE---EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
..... ......|++++++++.. +.+.... ...+..+.+++||+ |++
T Consensus 206 ~~~~~-------~~~~~~i~~~~~~~~~l~~~~~~~~~~------------~~~pdgi~~d~~G~-lwv----------- 254 (305)
T 3dr2_A 206 QTPEQ-------GHGSVEITAFAWRDGALHDRRHFASVP------------DGLPDGFCVDRGGW-LWS----------- 254 (305)
T ss_dssp ECCC----------CCCEEEEEEEETTEEEEEEEEECCS------------SSCCCSEEECTTSC-EEE-----------
T ss_pred ecCCc-------CCCCCEEEEEEecCCCccCCeEEEECC------------CCCCCeEEECCCCC-EEE-----------
Confidence 63310 00124799999885432 1111110 12345788999998 443
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
...+.|++++. +|+....+.... ....++|+||++.|++++.. .||.+++
T Consensus 255 ---~~~~gv~~~~~---~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 255 ---SSGTGVCVFDS---DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp ---CCSSEEEEECT---TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred ---ecCCcEEEECC---CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 22345888884 555555554333 46788999999998887642 4777654
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=114.24 Aligned_cols=197 Identities=12% Similarity=0.091 Sum_probs=111.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.||++||++.... .|.. +.. ...+|.|+.++. +|++.+...........+|+.+.++.
T Consensus 21 ~~~lv~lhg~~~~~~-----------~~~~----~~~--l~~~~~v~~~d~---~G~~~~~~~~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 21 RKTLFMLPDGGGSAF-----------SYAS----LPR--LKSDTAVVGLNC---PYARDPENMNCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SEEEEEECCTTCCGG-----------GGTT----SCC--CSSSEEEEEEEC---TTTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHH-----------HHHH----HHh--cCCCCEEEEEEC---CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 678899999643211 1211 122 367899999554 45554443333455666666666554
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCceeEEEEeccCCCCCCCCC--------------Cc-------cc
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLA---HAPHLFCCGIARSGAYNRTLTPF--------------GF-------QN 805 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~~~~~~~~~~~--------------~~-------~~ 805 (958)
+. ...++.++||||||.++..++. ..|++++++|..++......... +. ..
T Consensus 81 ~~-----~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
T 3ils_A 81 RQ-----PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGS 155 (265)
T ss_dssp HC-----SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSC
T ss_pred hC-----CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCC
Confidence 41 1248999999999999999998 67788999998876432111110 00 00
Q ss_pred ccchhh------hcHHHHHhcCcccccCCCCCCEE-EEeeCC---CCCCCC------------ChHHHHHHHHHHHhCCC
Q 002164 806 EDRTLW------EATSTYVEMSPFMSANKLKKPIL-LVHGEE---DNNSGT------------LTMQSDRFFNALKGHGA 863 (958)
Q Consensus 806 ~~~~~~------~~~~~~~~~sp~~~~~~~~~P~L-ii~G~~---D~~v~~------------~~~~~~~~~~~l~~~g~ 863 (958)
.....+ .+......+.+ ....++++|++ +++|++ |..++. .......+.+.+. +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~ 232 (265)
T 3ils_A 156 TEPPSYLIPHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GA 232 (265)
T ss_dssp SCCCTTHHHHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--cc
Confidence 000000 00111111111 12346789987 999999 987720 0222233322221 13
Q ss_pred cEEEEEeCCCCccCC-CcccHHHHHHHHHHHH
Q 002164 864 LCRLVILPFESHGYA-ARESIMHVLWETDRWL 894 (958)
Q Consensus 864 ~~~~~~~p~~~H~~~-~~~~~~~~~~~i~~fl 894 (958)
.++++++||+||.+. ..+....+.+.|.+||
T Consensus 233 ~~~~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 233 SFDIVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp CEEEEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred ceeEEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 689999999999864 1345555555565554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=112.72 Aligned_cols=231 Identities=13% Similarity=0.016 Sum_probs=139.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+...+|||||+.|+... ...+.+|++++++......... +....|+++++.++++..
T Consensus 20 ~~V~~v~fs~dg~~la~g~----------~~~~~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----- 78 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILST----------LKSFEIYNVHPVAHIMSQEMRH------LSKVRMLHRTNYVAFVTG----- 78 (355)
T ss_dssp CCCCEEEECTTSSEEEEEC----------SSEEEEEEETTEEEEEEEECSC------CCEEEECTTSSEEEEECS-----
T ss_pred CceEEEEECCCCCEEEEEc----------CCEEEEEecCCcceeeeeecCC------eEEEEEcCCCCEEEEEEC-----
Confidence 4688999999999888743 1235677777665443222222 457889999988876610
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCccccccccCCCCcEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYI 346 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l 346 (958)
....|.++|+ +|+.. .+.....+..+.|++++ +
T Consensus 79 -------------------------------------------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~ 113 (355)
T 3vu4_A 79 -------------------------------------------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--I 113 (355)
T ss_dssp -------------------------------------------STTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--E
T ss_pred -------------------------------------------CccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--E
Confidence 1235777887 66433 33333567788888875 4
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCc-e-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI-F-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++.. .+.+++||+.+. . ...+.. + .....+++ +.+++..
T Consensus 114 ~~~~--------------~~~i~i~d~~~~~~~~~~~~~-------~---------~~~~~~s~--~~la~~s------- 154 (355)
T 3vu4_A 114 VVSY--------------GDVISVFKFGNPWKRITDDIR-------F---------GGVCEFSN--GLLVYSN------- 154 (355)
T ss_dssp EEEE--------------TTEEEEEESSTTCCBSSCCEE-------E---------EEEEEEET--TEEEEEE-------
T ss_pred EEEE--------------cCEEEEEECCCCceeeEEecc-------C---------CceEEEEc--cEEEEeC-------
Confidence 4333 238999999864 2 111111 0 12345566 4444410
Q ss_pred cccccccCCeEEEEeCCCCCCCC-----------------ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEG-----------------PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-----------------~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
....+.|.+|++ ..+. ...+..+...+..++|+|||+.|+..+.++. .+.++|
T Consensus 155 ----g~~~g~v~iwd~---~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~---~v~iwd 224 (355)
T 3vu4_A 155 ----EFNLGQIHITKL---QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT---IIRVFK 224 (355)
T ss_dssp ----SSCTTCEEEEEC---CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS---EEEEEE
T ss_pred ----CCcCcEEEEEEC---CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC---EEEEEE
Confidence 023457888886 3322 4555666777889999999999887754431 145556
Q ss_pred CCCCCCCcEEEec-c-CCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc
Q 002164 488 PGSKDVAPRILFD-R-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (958)
Q Consensus 488 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~ 563 (958)
+.++ +....+. . ....+.. ++|+|||++|+....+ ..|.+||+..+.
T Consensus 225 ~~~~--~~~~~~~~g~h~~~v~~------~~~s~~~~~l~s~s~d---------------------~~v~iw~~~~~~ 273 (355)
T 3vu4_A 225 TEDG--VLVREFRRGLDRADVVD------MKWSTDGSKLAVVSDK---------------------WTLHVFEIFNDQ 273 (355)
T ss_dssp TTTC--CEEEEEECTTCCSCEEE------EEECTTSCEEEEEETT---------------------CEEEEEESSCCS
T ss_pred CCCC--cEEEEEEcCCCCCcEEE------EEECCCCCEEEEEECC---------------------CEEEEEEccCCC
Confidence 6553 3333333 2 3344444 8899999998887621 258899987653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=109.72 Aligned_cols=206 Identities=10% Similarity=0.049 Sum_probs=120.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCc----ee-eccCCCCccccccccceEEec--CCeEEEEE
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----AR-PLFQSPDIYLNAIFDNFVWVN--NSTLLVCT 261 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~----~~-~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~ 261 (958)
..+....|+|||++|+.... ...|.+|++.++. .. .+..... .+..++|+| |++.|+..
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSS---------DQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp SCEEEEEECSSSSEEEEEET---------TSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred cceeEEEEcCCCCEEEEeeC---------CCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEE
Confidence 46899999999999988652 4577888877653 11 1222222 277899998 68888876
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe----------eeecCC
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----------VKEIGP 330 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~----------~~~l~~ 330 (958)
. ....|.++++ +++ ...+..
T Consensus 78 ~-------------------------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 108 (351)
T 3f3f_A 78 S-------------------------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLND 108 (351)
T ss_dssp E-------------------------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred c-------------------------------------------------CCCeEEEEecCCCcccccccCcceeeeecc
Confidence 2 1233556665 431 333433
Q ss_pred C-ccccccccCCC--CcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeee
Q 002164 331 P-AVYTSLDPSPD--EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINW 406 (958)
Q Consensus 331 ~-~~~~~~~~SpD--Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 406 (958)
. ..+..++|+|+ |+.|+..+.+ +.+.+||+..+.. +.+...................+..+.|
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 3 67889999999 9999887733 4899999875431 1111000000000011122245678999
Q ss_pred ecC---CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---EeeccccCceeeecCC----ceEEEEEec
Q 002164 407 RSD---KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLDLRYGGISWCDDS----LALVYESWY 476 (958)
Q Consensus 407 spD---G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~~~~~~~~~spDg----~~l~~~~~~ 476 (958)
+|+ ++.++.. +..+.+..++. ..+....+ ..+...+..+.|+|+| +.|+....+
T Consensus 176 ~p~~~~~~~l~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 176 CPSRFSPEKLAVS-------------ALEQAIIYQRG---KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSSCCEEEEE-------------ETTEEEEEEEC---TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccCCCCCcEEEEe-------------cCCCcEEEEcc---CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 998 6666552 22334444442 33443323 3345567789999998 556555433
Q ss_pred cccceEEEEEcC
Q 002164 477 KTRRTRTWVISP 488 (958)
Q Consensus 477 ~~~~~~l~~~~~ 488 (958)
+. .++|.+..
T Consensus 240 g~--i~iwd~~~ 249 (351)
T 3f3f_A 240 GR--IRIFKITE 249 (351)
T ss_dssp SC--EEEEEEEE
T ss_pred Ce--EEEEeCCC
Confidence 32 66776653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=106.98 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=136.4
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|.|+|+++.|+|+.. ....|++++.++++.+.+.. +.. +..++++|||++++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~--------~~~~i~~~d~~~~~~~~~~~-~~~-----~~~i~~~~dG~l~v~~--------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDI--------PAKKVCRWDSFTKQVQRVTM-DAP-----VSSVALRQSGGYVATI--------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEET--------TTTEEEEEETTTCCEEEEEC-SSC-----EEEEEEBTTSSEEEEE---------
T ss_pred ccCCeEECCCCEEEEEEC--------CCCEEEEEECCCCcEEEEeC-CCc-----eEEEEECCCCCEEEEE---------
Confidence 456999999999998642 35689999999887654432 221 6688999999944432
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------ccccccccCCCC
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDE 343 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG 343 (958)
...|++++. +|+.+.+... .....+.++|||
T Consensus 72 ------------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG 109 (297)
T 3g4e_A 72 ------------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG 109 (297)
T ss_dssp ------------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS
T ss_pred ------------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC
Confidence 134888888 7766554321 235678899999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
+ |++.......... ......+.++.++.++......... .....++|+|||+.+++. +
T Consensus 110 ~-l~~~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~~~~~~--------------~~pngi~~spdg~~lyv~-~----- 167 (297)
T 3g4e_A 110 R-YFAGTMAEETAPA-VLERHQGALYSLFPDHHVKKYFDQV--------------DISNGLDWSLDHKIFYYI-D----- 167 (297)
T ss_dssp C-EEEEEEECCSBTT-BCCTTCEEEEEECTTSCEEEEEEEE--------------SBEEEEEECTTSCEEEEE-E-----
T ss_pred C-EEEecCCcccccc-cccCCCcEEEEEECCCCEEEEeecc--------------ccccceEEcCCCCEEEEe-c-----
Confidence 9 4554422110000 0001224677776654432222111 123578999999988763 1
Q ss_pred CcccccccCCeEEEEeCCCCCCCCc---eEEEe---eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGP---EILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
...+.|++++.++ .++.. +.+.. .......++++++|+ |+.+.+.+ ..|++++++++ +...
T Consensus 168 ------~~~~~i~~~~~d~-~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~---~~v~~~d~~tG--~~~~ 234 (297)
T 3g4e_A 168 ------SLSYSVDAFDYDL-QTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG---GRVIRLDPVTG--KRLQ 234 (297)
T ss_dssp ------GGGTEEEEEEECT-TTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT---TEEEEECTTTC--CEEE
T ss_pred ------CCCCcEEEEeccC-CCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC---CEEEEEcCCCc--eEEE
Confidence 2345788887522 22332 12221 123345688999995 55554433 36999999864 2222
Q ss_pred EeccCCccccCCCCCCceEec-cCCceEEEEee
Q 002164 498 LFDRSSEDVYSDPGSPMMRRT-STGTYVIAKIK 529 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~~ 529 (958)
....+...+.. +.|+ ||+++|+....
T Consensus 235 ~i~~p~~~~t~------~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTS------CCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEE------EEEESGGGCEEEEEEB
T ss_pred EEECCCCCceE------EEEeCCCCCEEEEEcC
Confidence 22222222222 6787 88888877763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-08 Score=106.08 Aligned_cols=239 Identities=13% Similarity=0.027 Sum_probs=142.5
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.+.|+|+++.|.++... . ..|+.++..+ +..+.+. . ...+.
T Consensus 17 gp~w~~~~~~l~~~d~~----------------------~----------~~i~~~d~~~----~~~~~~~-~--~~~~~ 57 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIP----------------------A----------KKVCRWDSFT----KQVQRVT-M--DAPVS 57 (297)
T ss_dssp EEEEETTTTEEEEEETT----------------------T----------TEEEEEETTT----CCEEEEE-C--SSCEE
T ss_pred CCeEECCCCEEEEEECC----------------------C----------CEEEEEECCC----CcEEEEe-C--CCceE
Confidence 68899998888887642 1 2678888743 3333332 2 23577
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
.++++|||+ |+... ...|++++.++++.+.+...........+..++++|||++.+.........
T Consensus 58 ~i~~~~dG~-l~v~~----------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~---- 122 (297)
T 3g4e_A 58 SVALRQSGG-YVATI----------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP---- 122 (297)
T ss_dssp EEEEBTTSS-EEEEE----------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT----
T ss_pred EEEECCCCC-EEEEE----------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc----
Confidence 889999999 43332 347999999988877665432211111255788999998444331110000
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEee
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
. ... .....||+++.+|+...+... .....++|||||+.|++...
T Consensus 123 ------------------~--------~~~--------~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 123 ------------------A--------VLE--------RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp ------------------T--------BCC--------TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred ------------------c--------ccc--------CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 0 000 023568888876655554443 44567899999999988764
Q ss_pred cCCccccccCCCCCceeEEEecc--CceE---EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTD--GIFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~--~~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
. .+.|++++++ ++.. +.+...+.. ...+..+.+++||+ |++. .
T Consensus 169 ~------------~~~i~~~~~d~~~G~~~~~~~~~~~~~~----------~~~p~g~~~d~~G~-lwva-~-------- 216 (297)
T 3g4e_A 169 L------------SYSVDAFDYDLQTGQISNRRSVYKLEKE----------EQIPDGMCIDAEGK-LWVA-C-------- 216 (297)
T ss_dssp G------------GTEEEEEEECTTTCCEEEEEEEEECCGG----------GCEEEEEEEBTTSC-EEEE-E--------
T ss_pred C------------CCcEEEEeccCCCCcccCcEEEEECCCC----------CCCCCeeEECCCCC-EEEE-E--------
Confidence 3 2378899874 3322 222222111 12346788999995 4432 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee-cCCceEEEEEec
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESWY 476 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~~ 476 (958)
...+.|++++. .+|.....+......+..++|+ ||++.|+.++..
T Consensus 217 ---~~~~~v~~~d~--~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 217 ---YNGGRVIRLDP--VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ---ETTTEEEEECT--TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred ---cCCCEEEEEcC--CCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 12346888884 2244344444333456778998 899988887653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-09 Score=115.13 Aligned_cols=273 Identities=8% Similarity=-0.077 Sum_probs=130.6
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC-CCCcc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DGAKL 191 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~-~~~~~ 191 (958)
...++|+++.||..+.+ ..|.||++.. ++......+..+. +...+
T Consensus 94 ~~~~~~~~~~las~~~d---------------------------------~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v 139 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQD---------------------------------NTVRLIITKN-ETIITQHVLGGKSGHHNFV 139 (393)
T ss_dssp ---CCEEEEEEEEEETT---------------------------------SCEEEEEEET-TEEEEEEEECTTTSCSSCE
T ss_pred eeecCCCCCEEEEEeCC---------------------------------CcEEEEECCC-CccceeeeecccCCCCCce
Confidence 44567888888877765 4789999854 1111112222122 23479
Q ss_pred cceeecC--------CCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-eccCCCCccccccccceEEecCCeE-EEEE
Q 002164 192 NFVTWSQ--------DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTL-LVCT 261 (958)
Q Consensus 192 ~~~~wSP--------DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~-l~~~ 261 (958)
..+.|+| ||+.||-... ...|.+||+.++... .+...... +..++|+|++.. |+..
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~---------D~tv~~Wd~~~~~~~~~~~~~~~~-----v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGD---------DCTLIIWRLTDEGPILAGYPLSSP-----GISVQFRPSNPNQLIVG 205 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEET---------TSEEEEEEEETTEEEEEEEECSSC-----EEEEEEETTEEEEEEEE
T ss_pred EEEEEccccccccCCCCCEEEEEEC---------CCeEEEEECCCCceeeeecCCCCC-----cEEEEECCCCCceEEec
Confidence 9999998 9999988653 567888887665443 33333332 668999999864 5544
Q ss_pred ecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC--eeeecCCC-ccccccc
Q 002164 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG--TVKEIGPP-AVYTSLD 338 (958)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~l~~~-~~~~~~~ 338 (958)
..+... .+++...+....... ... . .....++..+... ........ ..+..+.
T Consensus 206 ~~d~~v------------~~wd~~t~~~~~~~~-----~~~-~------~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 206 ERNGNI------------RIFDWTLNLSAEENS-----QTE-L------VKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp ETTSEE------------EEEETTCCC----------------------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred CCCCEE------------EEEECCCCccccccc-----ccC-C------cccceEEecccccceeeeecccccccceeee
Confidence 221110 011111000000000 000 0 0000011111100 00011111 3455666
Q ss_pred cC-CCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccc----cCccc-ccccccCcceeeeecCCC
Q 002164 339 PS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE----DIPIA-FNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 339 ~S-pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~----~~p~~-~~~~~~~~~~~~~spDG~ 411 (958)
|+ |||+.|+..+. ++.+.+||+..+. ...+....... ..|.. ............|+|...
T Consensus 262 ~~~~dg~~l~s~s~-------------d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 262 WIGSDGSGILAMCK-------------SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp EETTTTCEEEEECT-------------TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred eecCCCCEEEEEeC-------------CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 65 89999987763 3489999987443 22222211110 00100 000001112233444332
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
.+++.+ .+..+.|++|+. ..+.....+......+..++|||||+.|+..++.+ ..||++
T Consensus 329 ~~~~~s-----------gs~Dg~V~lwd~--~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G---v~lvrL 387 (393)
T 4gq1_A 329 DYFATA-----------HSQHGLIQLINT--YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS---VLLTRL 387 (393)
T ss_dssp TEEEEE-----------ETTTTEEEEEET--TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE---EEEEEE
T ss_pred CEEEEE-----------ECCCCEEEEEEC--CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEE
Confidence 222211 134668999996 34555555666677889999999999999886433 445544
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-09 Score=116.50 Aligned_cols=212 Identities=12% Similarity=0.026 Sum_probs=125.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH------CCcEEEEcCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA------RGFAILGGPTT 721 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~------~G~~vl~~~~~ 721 (958)
+|..|+...+.+.. ...|.||++||++.... .| ......|++ .||.|++ .
T Consensus 93 ~g~~i~~~~~~~~~------~~~~pllllHG~~~s~~-----------~~----~~~~~~L~~~~~~~~~gf~vv~---~ 148 (408)
T 3g02_A 93 EGLTIHFAALFSER------EDAVPIALLHGWPGSFV-----------EF----YPILQLFREEYTPETLPFHLVV---P 148 (408)
T ss_dssp TTEEEEEEEECCSC------TTCEEEEEECCSSCCGG-----------GG----HHHHHHHHHHCCTTTCCEEEEE---E
T ss_pred CCEEEEEEEecCCC------CCCCeEEEECCCCCcHH-----------HH----HHHHHHHhcccccccCceEEEE---E
Confidence 89999988876532 12567889999753211 11 133446666 5999999 6
Q ss_pred CCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCC
Q 002164 722 PIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPS-KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (958)
Q Consensus 722 ~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~-~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (958)
+.+|+|.+.... .......+|+.+.++. .+ .+ ++.++|||+||.+++.+|.++|+++..++..+++...
T Consensus 149 DlpG~G~S~~~~~~~~~~~~~~a~~~~~l~~~---lg---~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~ 222 (408)
T 3g02_A 149 SLPGYTFSSGPPLDKDFGLMDNARVVDQLMKD---LG---FGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAP 222 (408)
T ss_dssp CCTTSTTSCCSCSSSCCCHHHHHHHHHHHHHH---TT---CTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---hC---CCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCC
Confidence 667888775532 1234444444444433 22 23 8999999999999999999997766555555443321
Q ss_pred CCCCC--Ccccc---------------cc----------h---------------------hhhc-----H---------
Q 002164 797 TLTPF--GFQNE---------------DR----------T---------------------LWEA-----T--------- 814 (958)
Q Consensus 797 ~~~~~--~~~~~---------------~~----------~---------------------~~~~-----~--------- 814 (958)
..... .+... .. + .|.+ .
T Consensus 223 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y 302 (408)
T 3g02_A 223 PEGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLY 302 (408)
T ss_dssp TTCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 10000 00000 00 0 0000 0
Q ss_pred ----------HHHHhcC-c-cc--------ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 002164 815 ----------STYVEMS-P-FM--------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874 (958)
Q Consensus 815 ----------~~~~~~s-p-~~--------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~ 874 (958)
..|.+.. . .. .+.++++|+++++|.+|...+ +.. +.+.. ...+.+..++++|
T Consensus 303 ~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~--p~~---~~~~~---~~~~~~~~~~~gG 374 (408)
T 3g02_A 303 WLTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPV--PRS---WIATT---GNLVFFRDHAEGG 374 (408)
T ss_dssp HHTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCC--CHH---HHGGG---EEEEEEEECSSCB
T ss_pred HhhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccC--cHH---HHHhc---CCeeEEEECCCCc
Confidence 0000000 0 00 235578999999999997655 432 22222 2237788999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHhh
Q 002164 875 HGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 875 H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
|.. ..+..+.+.+.|.+||.+.-
T Consensus 375 Hf~-~lE~Pe~~~~~l~~fl~~~~ 397 (408)
T 3g02_A 375 HFA-ALERPRELKTDLTAFVEQVW 397 (408)
T ss_dssp SCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred Cch-hhhCHHHHHHHHHHHHHHHH
Confidence 986 36778889999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-08 Score=107.23 Aligned_cols=187 Identities=6% Similarity=-0.019 Sum_probs=117.8
Q ss_pred CcccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCC
Q 002164 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (958)
Q Consensus 189 ~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (958)
..+....|+| +|+.|+.... ...|.+||+.+++...+...... ..+..++|+|||++|+...
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~~pdg~~lasg~---- 189 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADN---------RGTIGFQSYEDDSQYIVHSAKSD---VEYSSGVLHKDSLLLALYS---- 189 (343)
T ss_dssp SCEEEEECCC---CCEEEEEET---------TCCEEEEESSSSCEEEEECCCSS---CCCCEEEECTTSCEEEEEC----
T ss_pred CCEEEEEcCCCCCCCEEEEEeC---------CCcEEEEECCCCcEEEEEecCCC---CceEEEEECCCCCEEEEEc----
Confidence 4688899999 9999887652 56889999998887654422221 1167899999999998761
Q ss_pred CCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee--eecCC-C-ccccccccCC
Q 002164 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGP-P-AVYTSLDPSP 341 (958)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~l~~-~-~~~~~~~~Sp 341 (958)
..+.|.++|+ +++. ..+.. . ..+..++|||
T Consensus 190 ---------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 190 ---------------------------------------------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ---------------------------------------------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ---------------------------------------------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC
Confidence 2345778888 6643 35555 3 7788999999
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
||++|+..+.+ .|.+||+..... ..+....... .+ .....+.|+|||+.|+..
T Consensus 225 ~g~~l~s~~~~--------------~v~iwd~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~g~~l~~~---- 278 (343)
T 3lrv_A 225 NGYWMVVECDQ--------------TVVCFDLRKDVGTLAYPTYTIPE-FK-------TGTVTYDIDDSGKNMIAY---- 278 (343)
T ss_dssp TSSEEEEEESS--------------BEEEEETTSSTTCBSSCCCBC-------------CCEEEEECTTSSEEEEE----
T ss_pred CCCEEEEEeCC--------------eEEEEEcCCCCcceeeccccccc-cc-------ccceEEEECCCCCEEEEe----
Confidence 99999988722 799999985432 2222111000 00 011359999999988763
Q ss_pred cCCCccccccc-CCeEEEEeCCCCCCCCceEEEeeccccCceeeec---CCceEEEEEecc
Q 002164 421 DGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD---DSLALVYESWYK 477 (958)
Q Consensus 421 ~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp---Dg~~l~~~~~~~ 477 (958)
+. .+.+.+|+. ..+.+.... ..+..+.|++ +++.|++....+
T Consensus 279 ---------s~~d~~i~v~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 279 ---------SNESNSLTIYKF--DKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp ---------ETTTTEEEEEEE--CTTTCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred ---------cCCCCcEEEEEE--cccccceEe----cCceeEecCccccccceeEEEecCC
Confidence 22 456777764 122222222 2234567777 788887776544
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=116.79 Aligned_cols=210 Identities=13% Similarity=-0.056 Sum_probs=119.6
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~ 728 (958)
+..+...++.|+++..+. .+.||++||...... . .+.......|+++||.|+.++ .+|+|.
T Consensus 13 ~~~l~~~i~~p~~~~~~~---~~~VvllHG~~~~~~-----------~--~~~~~l~~~L~~~G~~v~~~d---~~g~g~ 73 (317)
T 1tca_A 13 KSVLDAGLTCQGASPSSV---SKPILLVPGTGTTGP-----------Q--SFDSNWIPLSTQLGYTPCWIS---PPPFML 73 (317)
T ss_dssp HHHHHHTEEETTBCTTSC---SSEEEEECCTTCCHH-----------H--HHTTTHHHHHHTTTCEEEEEC---CTTTTC
T ss_pred HHHHhheeeCCCCCCCCC---CCeEEEECCCCCCcc-----------h--hhHHHHHHHHHhCCCEEEEEC---CCCCCC
Confidence 344556678887764322 456888999632110 0 011134567788999999954 456654
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccCCCCCCCC-----
Q 002164 729 EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAYNRTLTP----- 800 (958)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~~~~~~~----- 800 (958)
+. ......++.+.++++.++. ..+++.++||||||.++.+++.+.| ++++++|++++........
T Consensus 74 ~~-----~~~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~ 146 (317)
T 1tca_A 74 ND-----TQVNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA 146 (317)
T ss_dssp SC-----HHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHH
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhh
Confidence 32 2334567778888887753 2368999999999999999988765 7899999999865422100
Q ss_pred CCcccc--cch-hhhc-HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHH--HHHHHHHHHhCCCcEEEEEe----
Q 002164 801 FGFQNE--DRT-LWEA-TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGHGALCRLVIL---- 870 (958)
Q Consensus 801 ~~~~~~--~~~-~~~~-~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~~g~~~~~~~~---- 870 (958)
+..... ... .... ...+.... ....++|+++++|+.|..|+ +.. +.+....+.. . +.+..
T Consensus 147 ~~~~~~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~--p~~~~g~~~~~~l~~--a--~~~~~~~~~ 216 (317)
T 1tca_A 147 LAVSAPSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQ--PQVSNSPLDSSYLFN--G--KNVQAQAVC 216 (317)
T ss_dssp TTCBCHHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSC--CCCSSSTTSTTCCBT--S--EEEEHHHHH
T ss_pred hhhcCchHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeEC--CccccccchhhhccC--C--ccEEeeecc
Confidence 000000 000 0000 01111100 01246899999999999997 554 2111111211 1 22222
Q ss_pred ---CCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 871 ---PFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 871 ---p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++.+|... ..+ ..++..+.+||+.
T Consensus 217 ~~~~~~gH~~~-l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 217 GPLFVIDHAGS-LTS-QFSYVVGRSALRS 243 (317)
T ss_dssp CTTCCCCTTHH-HHB-HHHHHHHHHHHHC
T ss_pred CCCCccCcccc-cCC-HHHHHHHHHHhcC
Confidence 57899752 222 2346677888765
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-10 Score=127.90 Aligned_cols=132 Identities=18% Similarity=0.172 Sum_probs=91.5
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCC-CC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTT-PI 723 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~-~~ 723 (958)
+.|... ..+|.|.+.... .++|+||++|||++..+.. ..+. . . .|+ .+|++|+.++|+ +.
T Consensus 95 ~edcl~--lnv~~P~~~~~~--~~~Pv~v~iHGG~~~~g~~--------~~~~---~--~-~la~~~g~vvv~~nYRlg~ 156 (542)
T 2h7c_A 95 SEDCLY--LNIYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STYD---G--L-ALAAHENVVVVTIQYRLGI 156 (542)
T ss_dssp ESCCCE--EEEEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTSC---C--H-HHHHHHTCEEEEECCCCHH
T ss_pred CCCCcE--EEEEECCCCCCC--CCCCEEEEECCCcccCCCc--------cccC---H--H-HHHhcCCEEEEecCCCCcc
Confidence 346544 468899865332 3499999999997654332 1121 1 1 345 489999998887 32
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCC
Q 002164 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (958)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (958)
.|++............+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 157 ~gf~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 157 WGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp HHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccCCCCCcccCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 343322111112234578999999999886 24799999999999999999998886 3578999999998754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-08 Score=103.93 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=133.9
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|.|+||++.|+++.. ....|++++.++++.+.+.. +.. +..++|+|||++++..
T Consensus 51 ~egp~~~~~~~~l~~~d~--------~~~~i~~~d~~~~~~~~~~~-~~~-----v~~i~~~~dg~l~v~~--------- 107 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVHAL-PFM-----GSALAKISDSKQLIAS--------- 107 (326)
T ss_dssp EEEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEEEC-SSC-----EEEEEEEETTEEEEEE---------
T ss_pred CcCCeEeCCCCEEEEEEC--------CCCEEEEEECCCCcEEEEEC-CCc-----ceEEEEeCCCeEEEEE---------
Confidence 356899999999988742 24589999999887765532 221 6688999999877644
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------ccccccccCCCC
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDE 343 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDG 343 (958)
...|++++. +|+.+.+... ..+..+.++|||
T Consensus 108 ------------------------------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 108 ------------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp ------------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred ------------------------------------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 123888898 7776655331 245678899999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
+. ++...... .....+.|+.++ + +..+.+.... .....+.|+|||+.+++. +
T Consensus 146 ~l-~v~~~~~~------~~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~lyv~-~----- 197 (326)
T 2ghs_A 146 AL-WIGTMGRK------AETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D----- 197 (326)
T ss_dssp CE-EEEEEETT------CCTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E-----
T ss_pred CE-EEEeCCCc------CCCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCEEEEE-E-----
Confidence 84 44432210 001134677777 4 4444432210 123578999999988774 1
Q ss_pred CcccccccCCeEEEEeCCCCCC-C--CceEEEee---ccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQG-E--GPEILHKL---DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g-~--~~~~l~~~---~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
...+.|++++.++.+| . ..+.+... ......+.++++|+ |+++...+ ..|+++++++ +...
T Consensus 198 ------~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~---~~v~~~d~~g---~~~~ 264 (326)
T 2ghs_A 198 ------TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE---GAVDRYDTDG---NHIA 264 (326)
T ss_dssp ------TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT---TEEEEECTTC---CEEE
T ss_pred ------CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCC---CEEEEECCCC---CEEE
Confidence 2245788988521122 1 11223221 23345678889986 44443322 3589998854 2222
Q ss_pred EeccCCccccCCCCCCceEec-cCCceEEEEe
Q 002164 498 LFDRSSEDVYSDPGSPMMRRT-STGTYVIAKI 528 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~ 528 (958)
........+.+ ++|+ +|++.|+...
T Consensus 265 ~i~~~~~~~~~------~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 265 RYEVPGKQTTC------PAFIGPDASRLLVTS 290 (326)
T ss_dssp EEECSCSBEEE------EEEESTTSCEEEEEE
T ss_pred EEECCCCCcEE------EEEecCCCCEEEEEe
Confidence 22222222222 6787 8888777665
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=122.86 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=91.4
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC-cEEEEcCCCCC-
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTPI- 723 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~vl~~~~~~~- 723 (958)
+.|... ..+|.|.. . ..++|+||++|||++..+...... + ....|+++| ++|+.++|+-.
T Consensus 81 ~edcl~--l~v~~P~~--~--~~~~Pviv~iHGGg~~~g~~~~~~------~------~~~~la~~~~~vvv~~nYRlg~ 142 (498)
T 2ogt_A 81 SEDGLY--LNIWSPAA--D--GKKRPVLFWIHGGAFLFGSGSSPW------Y------DGTAFAKHGDVVVVTINYRMNV 142 (498)
T ss_dssp BSCCCE--EEEEESCS--S--SCCEEEEEEECCSTTTSCCTTCGG------G------CCHHHHHHHTCEEEEECCCCHH
T ss_pred CCCCcE--EEEEecCC--C--CCCCcEEEEEcCCccCCCCCCCCc------C------CHHHHHhCCCEEEEeCCCcCch
Confidence 345544 46778863 2 234899999999976543321110 1 134677776 99999888721
Q ss_pred CCCCCccc-----chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccC
Q 002164 724 IGEGDEEA-----NDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (958)
Q Consensus 724 ~G~G~~~~-----~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (958)
.|++.... ....+...+.|+.+|++|++++- ..|+++|.|+|+|+||.+++.++... ..+|+++|+.+|.
T Consensus 143 ~Gf~~~~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 222 (498)
T 2ogt_A 143 FGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGS 222 (498)
T ss_dssp HHCCCCTTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCC
T ss_pred hhccCchhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCC
Confidence 24433221 12234567899999999999862 36999999999999999999888753 4689999999997
Q ss_pred CC
Q 002164 794 YN 795 (958)
Q Consensus 794 ~~ 795 (958)
..
T Consensus 223 ~~ 224 (498)
T 2ogt_A 223 GS 224 (498)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=125.80 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=90.2
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCC-C
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTP-I 723 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~-~ 723 (958)
+.|...+ .+|.|... + +.++|+||++|||++..+..... .+ ....|++ +|++|+.++|+- .
T Consensus 93 ~edcl~l--~v~~P~~~-~--~~~~Pviv~iHGGg~~~g~~~~~------~~------~~~~la~~~g~vvv~~nYRlg~ 155 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR-P--ASPTPVLIWIYGGGFYSGAASLD------VY------DGRFLAQVEGAVLVSMNYRVGT 155 (543)
T ss_dssp ESCCCEE--EEEEESSC-C--SSCEEEEEEECCSTTTCCCTTSG------GG------CTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCeE--EEeecCCC-C--CCCCeEEEEECCCccccCCCCCC------cC------ChHHHHhcCCEEEEEecccccc
Confidence 4466544 67788652 2 23489999999997654432111 11 1235665 799999988872 2
Q ss_pred CCCCCcc-cchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCC
Q 002164 724 IGEGDEE-ANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (958)
Q Consensus 724 ~G~G~~~-~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (958)
.|++... .....+...+.|+.+|++|++++- ..|++||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 156 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp HHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 3443321 111223456899999999999862 37999999999999999998887653 46899999999854
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.4e-08 Score=108.12 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=118.6
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceee---c--cCCCCccccccccceEEec--------CCeEE
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---L--FQSPDIYLNAIFDNFVWVN--------NSTLL 258 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~---l--t~~~~~~~~~~~~~~~wsp--------DG~~l 258 (958)
....++++++.|+... ....|.+|++++++... + ..... ..+..++|+| ||++|
T Consensus 93 ~~~~~~~~~~~las~~---------~d~~v~lw~~~~~~~~~~~~~~~~~gH~----~~v~~v~~~p~~~~~~~~d~~~l 159 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVC---------QDNTVRLIITKNETIITQHVLGGKSGHH----NFVNDIDIADVYSADNRLAEQVI 159 (393)
T ss_dssp ----CCEEEEEEEEEE---------TTSCEEEEEEETTEEEEEEEECTTTSCS----SCEEEEEEEEEECTTCSEEEEEE
T ss_pred ceeecCCCCCEEEEEe---------CCCcEEEEECCCCccceeeeecccCCCC----CceEEEEEccccccccCCCCCEE
Confidence 3345667777777754 24567777777775432 1 11122 2278999998 89999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC-eeeecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~ 335 (958)
+... ....+.++|+ ++ ....+... ..+.
T Consensus 160 as~s-------------------------------------------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 160 ASVG-------------------------------------------------DDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp EEEE-------------------------------------------------TTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred EEEE-------------------------------------------------CCCeEEEEECCCCceeeeecCCCCCcE
Confidence 9762 1233555565 44 33333333 6678
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCcccc--------Ccc----cccccccCcc
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAED--------IPI----AFNSVRKGMR 402 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~--------~p~----~~~~~~~~~~ 402 (958)
.++|+|++..++++... ++.|.+||+.++... .+...+.... .+. ...+....+.
T Consensus 191 ~v~~~p~~~~~l~~~~~------------d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGER------------NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEETTEEEEEEEEET------------TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred EEEECCCCCceEEecCC------------CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 89999999765544432 348999999854321 1111110000 000 0112223456
Q ss_pred eeeee-cCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecccc------------------Cceee
Q 002164 403 SINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY------------------GGISW 463 (958)
Q Consensus 403 ~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~------------------~~~~~ 463 (958)
.+.|+ |||+.|+.. ...+.+.+|++ ..+.....+......+ ....|
T Consensus 259 ~v~~~~~dg~~l~s~-------------s~d~~i~vwd~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 259 NVRWIGSDGSGILAM-------------CKSGAWLRWNL--FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp EEEEETTTTCEEEEE-------------CTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeeecCCCCEEEEE-------------eCCCCEEEEEC--ccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 67776 899887653 34556777775 2222222221111111 12334
Q ss_pred ecC-CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 464 CDD-SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 464 spD-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+|. ++.++.+...+ ..|++++...+. ...........+.+ ++|||||++|+...
T Consensus 324 ~~~~~~~~~~sgs~D---g~V~lwd~~~~~--~~~~~~~~~~~V~s------vafspdG~~LA~as 378 (393)
T 4gq1_A 324 HPRYMDYFATAHSQH---GLIQLINTYEKD--SNSIPIQLGMPIVD------FCWHQDGSHLAIAT 378 (393)
T ss_dssp CSSCTTEEEEEETTT---TEEEEEETTCTT--CCEEEEECSSCEEE------EEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEECCC---CEEEEEECCCCc--EEEEecCCCCcEEE------EEEcCCCCEEEEEe
Confidence 443 34444433333 246666666642 22222222233444 89999999999886
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-07 Score=98.13 Aligned_cols=228 Identities=10% Similarity=0.010 Sum_probs=121.6
Q ss_pred ceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 314 TQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 314 ~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
..|++++.+|+.+.+... .....++++|||+.++... . ...|.+++.++ ..+.+..... ..+
T Consensus 67 ~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~-~------------~~~v~~~~~~g-~~~~~~~~~~--~~~- 129 (305)
T 3dr2_A 67 RRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEH-G------------RRAITRSDADG-QAHLLVGRYA--GKR- 129 (305)
T ss_dssp TEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEET-T------------TTEEEEECTTS-CEEEEECEET--TEE-
T ss_pred CEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEEC-C------------CCEEEEECCCC-CEEEEEeccC--CCc-
Confidence 458888876655555444 5567889999999554432 1 23788888874 3444432110 000
Q ss_pred cccccccCcceeeeecCCCCceEEEEeccCCC------cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecC
Q 002164 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGD------AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (958)
...+..+.++|||+ +++ ++..-|.. ..........||+++. ++++.+.+. .......++|+||
T Consensus 130 -----~~~~~~i~~d~dG~-l~~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~---~~g~~~~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 130 -----LNSPNDLIVARDGA-IWF-TDPPFGLRKPSQGCPADPELAHHSVYRLPP---DGSPLQRMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp -----CSCCCCEEECTTSC-EEE-ECCSGGGSCGGGSCCCCCSSSCEEEEEECS---SSCCCEEEE-EESSEEEEEECTT
T ss_pred -----cCCCCCEEECCCCC-EEE-eCcCCCccccccccccccccCCCeEEEEcC---CCCcEEEEe-cCCCCcceEEcCC
Confidence 02345789999997 333 22110100 0000012356899884 556666665 4344467899999
Q ss_pred CceEEEEEeccc--cceEEEEEcCCCCCCC-cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccC
Q 002164 467 SLALVYESWYKT--RRTRTWVISPGSKDVA-PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (958)
Q Consensus 467 g~~l~~~~~~~~--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (958)
|+.|++...... ....|++++++++... .....+.......+ +.++++|+ |+...
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg------i~~d~~G~-lwv~~--------------- 256 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG------FCVDRGGW-LWSSS--------------- 256 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS------EEECTTSC-EEECC---------------
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe------EEECCCCC-EEEec---------------
Confidence 999887754320 1246888887653101 11111111111011 55677776 32221
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 544 GATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 544 ~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
...|++|+.++.....+..... +. ...|++|++.|++.... .+|.+++
T Consensus 257 -------~~gv~~~~~~g~~~~~~~~~~~------~~-------~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 257 -------GTGVCVFDSDGQLLGHIPTPGT------AS-------NCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp -------SSEEEEECTTSCEEEEEECSSC------CC-------EEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred -------CCcEEEECCCCCEEEEEECCCc------ee-------EEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 1148899986554444433221 11 24677888887776642 5777654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-07 Score=103.43 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=133.8
Q ss_pred ceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccc
Q 002164 114 LSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNF 193 (958)
Q Consensus 114 ~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~ 193 (958)
..+++||++|+....+ +.|.+|++.+ + .....+.+ +...+..
T Consensus 137 ~~~~~d~~~l~~g~~d---------------------------------g~i~iwd~~~-~--~~~~~~~~--h~~~v~~ 178 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTG--HTGSVLC 178 (435)
T ss_dssp EEEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECC--CSSCEEE
T ss_pred EEEEECCCEEEEEeCC---------------------------------CeEEEEeCCC-C--eEEEEEcC--CCCcEEE
Confidence 3677899999888765 5799999854 2 23344443 2345777
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
..| ||+.|+... ....|.+|++.+++........... +..++|++ ..|+...
T Consensus 179 l~~--~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~l~~~~--~~l~s~s----------- 230 (435)
T 1p22_A 179 LQY--DERVIITGS---------SDSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNN--GMMVTCS----------- 230 (435)
T ss_dssp EEC--CSSEEEEEE---------TTSCEEEEESSSCCEEEEECCCCSC----EEEEECCT--TEEEEEE-----------
T ss_pred EEE--CCCEEEEEc---------CCCeEEEEECCCCcEEEEEcCCCCc----EEEEEEcC--CEEEEee-----------
Confidence 777 788887754 2568899999988765544333322 66777864 3555441
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee----eecCCC-ccccccccCCCCcEEE
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV----KEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~----~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
..+.|.++++ ++.. ..+... ..+..+.| ||+.|+
T Consensus 231 --------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 231 --------------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp --------------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred --------------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 2234677777 5532 233333 55666666 888888
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
..+.+ +.+.+||+.++.. ..+..+. ..+..+.| +++.++..
T Consensus 271 s~~~d-------------g~i~vwd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~g---------- 312 (435)
T 1p22_A 271 SASGD-------------RTIKVWNTSTCEFVRTLNGHK-------------RGIACLQY--RDRLVVSG---------- 312 (435)
T ss_dssp EEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEE--ETTEEEEE----------
T ss_pred EEeCC-------------CeEEEEECCcCcEEEEEcCCC-------------CcEEEEEe--CCCEEEEE----------
Confidence 87733 4899999986543 3333211 22344555 55555542
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+..+.|.+||+ ..+.....+..+...+..+.| |++.|+..+.++. .++|.+
T Consensus 313 ---~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~--i~vwd~ 363 (435)
T 1p22_A 313 ---SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK--IKVWDL 363 (435)
T ss_dssp ---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC--EEEEEH
T ss_pred ---eCCCeEEEEEC--CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc--EEEEEC
Confidence 44567899996 234334444445555666777 7888777664433 556654
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=104.28 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=56.8
Q ss_pred HHHHHHHC--CcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~--G~~vl~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
....|+++ ||.|+++ +. |+|.+... ..+......++.++++++...... .+++.++||||||.++..++.++
T Consensus 27 ~~~~L~~~~~g~~v~~~---d~-G~g~s~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~lvGhSmGG~ia~~~a~~~ 101 (279)
T 1ei9_A 27 IKKMVEKKIPGIHVLSL---EI-GKTLREDVENSFFLNVNSQVTTVCQILAKDPKL-QQGYNAMGFSQGGQFLRAVAQRC 101 (279)
T ss_dssp HHHHHHHHSTTCCEEEC---CC-SSSHHHHHHHHHHSCHHHHHHHHHHHHHSCGGG-TTCEEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEEE---Ee-CCCCccccccccccCHHHHHHHHHHHHHhhhhc-cCCEEEEEECHHHHHHHHHHHHc
Confidence 45566664 8899994 44 77765321 122222334444555555442211 26899999999999999999999
Q ss_pred CCc-eeEEEEeccCC
Q 002164 781 PHL-FCCGIARSGAY 794 (958)
Q Consensus 781 p~~-~~a~v~~~~~~ 794 (958)
|+. ++.+|+.++..
T Consensus 102 ~~~~v~~lv~~~~p~ 116 (279)
T 1ei9_A 102 PSPPMVNLISVGGQH 116 (279)
T ss_dssp CSSCEEEEEEESCCT
T ss_pred CCcccceEEEecCcc
Confidence 984 99999887654
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-09 Score=107.44 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=90.9
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh------CCC
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH------APH 782 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~------~p~ 782 (958)
+.+|.|++ .|.+|+|.+... ...|+.+.++.+.+. +....+++.++||||||.+|+.+|.+ .|+
T Consensus 37 ~~~~~vi~---~Dl~GhG~S~~~------~~~~~~~~~~~~~~~l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~ 107 (242)
T 2k2q_B 37 QGECEMLA---AEPPGHGTNQTS------AIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQ 107 (242)
T ss_dssp CCSCCCEE---EECCSSCCSCCC------TTTHHHHHHHHTTTTCCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCeEEEE---EeCCCCCCCCCC------CcCCHHHHHHHHHHHHHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCC
Confidence 45799999 666788877432 123455555555433 22123589999999999999999986 566
Q ss_pred ceeEEEEeccCCCCCC-CCC----------CcccccchhhhcH-----------HHHH---hcCcccccCCCCCCEEEEe
Q 002164 783 LFCCGIARSGAYNRTL-TPF----------GFQNEDRTLWEAT-----------STYV---EMSPFMSANKLKKPILLVH 837 (958)
Q Consensus 783 ~~~a~v~~~~~~~~~~-~~~----------~~~~~~~~~~~~~-----------~~~~---~~sp~~~~~~~~~P~Lii~ 837 (958)
++-......+...... ... ...........+. ..+. .+.. ..+.++++|+|+++
T Consensus 108 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~ 186 (242)
T 2k2q_B 108 AVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFN 186 (242)
T ss_dssp SEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHHTTTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEE
T ss_pred EEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEe
Confidence 5321111111111000 000 0000000000000 1111 1111 12567899999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
|++|..++ .....+ +..-...+++++++ ||... .++...+.+.+.+||.+.
T Consensus 187 G~~D~~~~---~~~~~~----~~~~~~~~~~~~~~-gH~~~-~e~p~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 187 GLDDKKCI---RDAEGW----KKWAKDITFHQFDG-GHMFL-LSQTEEVAERIFAILNQH 237 (242)
T ss_dssp ECSSCCHH---HHHHHH----HTTCCCSEEEEEEC-CCSHH-HHHCHHHHHHHHHHHHTT
T ss_pred eCCCCcCH---HHHHHH----HHHhcCCeEEEEeC-CceeE-cCCHHHHHHHHHHHhhcc
Confidence 99998753 333333 22222234777886 99763 455567788888888754
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=121.81 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=88.6
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCC-CCCCCc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPI-IGEGDE 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~-~G~G~~ 729 (958)
+...+|.|.... .++|+||++|||.+..+...... +. ...|++ .|++|+.++|+-. .|+...
T Consensus 93 l~lnv~~P~~~~----~~~Pv~v~iHGGg~~~g~~~~~~------~~------~~~la~~~~~vvv~~nYRlg~~Gf~~~ 156 (529)
T 1p0i_A 93 LYLNVWIPAPKP----KNATVLIWIYGGGFQTGTSSLHV------YD------GKFLARVERVIVVSMNYRVGALGFLAL 156 (529)
T ss_dssp CEEEEEEESSCC----SSEEEEEEECCSTTTSCCTTCGG------GC------THHHHHHHCCEEEEECCCCHHHHHCCC
T ss_pred CeEEEeeCCCCC----CCCeEEEEECCCccccCCCCccc------cC------hHHHhccCCeEEEEecccccccccccC
Confidence 445678887532 34899999999976544321110 11 235665 7999999888722 233222
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 730 -EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 730 -~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
......+...+.|+.+|++|++++ ...|+++|.|+|+|+||.++..++... ..+|+++|+.+|...
T Consensus 157 ~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 157 PGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CCCCCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 111122345688999999999986 247999999999999999999888763 468999999998754
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=124.57 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=87.4
Q ss_pred EEEEEEec-----CCCCCCCC--CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-
Q 002164 652 LSATLYLP-----PGYDPSKD--GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI- 723 (958)
Q Consensus 652 l~~~l~~P-----~~~~~~~~--~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~- 723 (958)
|...+|.| ... ..++ .++|+||++|||.+..+...... +. ...|+++|++|+.++|+..
T Consensus 91 L~lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~------~~------~~~l~~~g~vvv~~nYRl~~ 157 (551)
T 2fj0_A 91 IHANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDL------HG------PEYLVSKDVIVITFNYRLNV 157 (551)
T ss_dssp CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTT------CB------CTTGGGGSCEEEEECCCCHH
T ss_pred eEEEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccc------cC------HHHHHhCCeEEEEeCCcCCc
Confidence 55677888 321 1111 12899999999976544322111 11 2356789999999888732
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCC
Q 002164 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (958)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (958)
.|+.........+...+.|+.+|++|+.++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 158 ~Gf~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 158 YGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp HHHCCCSSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccccCcccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 232221111112345689999999999986 23699999999999999999988876 356899999999863
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=118.91 Aligned_cols=161 Identities=12% Similarity=-0.034 Sum_probs=103.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (958)
.|+||++||.... ....+.......|++ .||.|++ .|.+|+|.+.... ........|+.+.
T Consensus 70 ~~~vvllHG~~~s-------------~~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~g~s~~~~~~~~~~~~~~dl~~~ 133 (432)
T 1gpl_A 70 RKTRFIIHGFTDS-------------GENSWLSDMCKNMFQVEKVNCIC---VDWKGGSKAQYSQASQNIRVVGAEVAYL 133 (432)
T ss_dssp SEEEEEECCTTCC-------------TTSHHHHHHHHHHHHHCCEEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-------------CCchHHHHHHHHHHhcCCcEEEE---EECccccCccchhhHhhHHHHHHHHHHH
Confidence 6899999996321 101111123455665 7999999 4555666653221 1234556889999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCccccc
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA 826 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 826 (958)
+++|.++..++.+++.++|||+||.+|+.++.+.|++++.++..+|..-..... . . ..+.++
T Consensus 134 i~~l~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~------~-~-------~~~l~~---- 195 (432)
T 1gpl_A 134 VQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDT------P-E-------EVRLDP---- 195 (432)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTC------C-T-------TTSCCG----
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCC------C-h-------hhccCc----
Confidence 999986544567899999999999999999999999999999887753211000 0 0 000111
Q ss_pred CCCCCCEEEEeeCCCCCCCCCh---HHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 827 NKLKKPILLVHGEEDNNSGTLT---MQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~---~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
....++.++||..|..|| . .... .. ..+.+||+.||.-
T Consensus 196 -~da~~V~vIHt~~d~lVP--~~~~g~~~-------~l---g~~dfypngg~~q 236 (432)
T 1gpl_A 196 -SDAKFVDVIHTDISPILP--SLGFGMSQ-------KV---GHMDFFPNGGKDM 236 (432)
T ss_dssp -GGSSEEEEECSCCSCHHH--HCCCBCSS-------CC---SSEEEEEGGGSSC
T ss_pred -CCCceEEEEEcCCccccc--cccccccc-------cc---cceEEccCCCCCC
Confidence 123589999999999886 3 1111 11 2455689989953
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-09 Score=120.75 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=89.9
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCC-
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPI- 723 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~- 723 (958)
+.|... ..+|.|... . .++|+||++|||.+..+...... +. ...|+ ++|++|+.++||-.
T Consensus 91 sedcl~--lnv~~P~~~-~---~~~Pv~v~iHGG~~~~g~~~~~~------~~------~~~la~~~~~vvv~~nYRlg~ 152 (537)
T 1ea5_A 91 SEDCLY--LNIWVPSPR-P---KSTTVMVWIYGGGFYSGSSTLDV------YN------GKYLAYTEEVVLVSLSYRVGA 152 (537)
T ss_dssp CSCCCE--EEEEECSSC-C---SSEEEEEEECCSTTTCCCTTCGG------GC------THHHHHHHTCEEEECCCCCHH
T ss_pred CCcCCe--EEEeccCCC-C---CCCeEEEEECCCcccCCCCCCCc------cC------hHHHHhcCCEEEEEeccCccc
Confidence 345544 467888753 1 34899999999976544321110 11 23556 78999999888722
Q ss_pred CCCCCc-ccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCC
Q 002164 724 IGEGDE-EANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (958)
Q Consensus 724 ~G~G~~-~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (958)
.|+... ......+...+.|+.+|++|++++- ..|+++|.|+|+|+||.++..++.. ...+|+++|+.+|...
T Consensus 153 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 153 FGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp HHHCCCTTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 232221 0111223456899999999999862 3799999999999999999888775 2368999999998653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-06 Score=92.68 Aligned_cols=254 Identities=13% Similarity=0.038 Sum_probs=130.7
Q ss_pred eceeEEEccCCCCCCceeeeccCC-------CCC-cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFP-------DGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~-------~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l 234 (958)
+.|++.|+.++- .+.+.++... .+. .......+||| |+.+...+ ..+++...|.++|.++++.+.-
T Consensus 106 ~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~--~~g~~~g~v~vlD~~T~~v~~~ 179 (462)
T 2ece_A 106 SRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGN--EEGEGPGGILMLDHYSFEPLGK 179 (462)
T ss_dssp CCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEE--TTSCSCCEEEEECTTTCCEEEE
T ss_pred CeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCC--cCCCCCCeEEEEECCCCeEEEE
Confidence 378999986532 2222222110 011 23344689999 43333211 2356678999999998886544
Q ss_pred cCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcc
Q 002164 235 FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (958)
Q Consensus 235 t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~ 314 (958)
...+... ......+.|+||++.++.+.- ..|.+ -+.+ .+..+ ... ....
T Consensus 180 ~~~~~~~-~~~~Yd~~~~p~~~~mvsS~w----------g~p~~-----~~~g------------~~~~~--~~~-~~~d 228 (462)
T 2ece_A 180 WEIDRGD-QYLAYDFWWNLPNEVLVSSEW----------AVPNT-----IEDG------------LKLEH--LKD-RYGN 228 (462)
T ss_dssp CCSBCTT-CCCCCCEEEETTTTEEEECBC----------CCHHH-----HTTC------------CCTTT--HHH-HSCC
T ss_pred EccCCCC-ccccceEEECCCCCEEEEccC----------cCccc-----cccc------------cchhh--hhh-ccCC
Confidence 3322110 000225788999997775410 00000 0000 00000 000 1346
Q ss_pred eEEEEEc-CCeee-ecCCC---cccc--ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc--CC
Q 002164 315 QLVLVSL-DGTVK-EIGPP---AVYT--SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD--LP 385 (958)
Q Consensus 315 ~l~~~~~-~g~~~-~l~~~---~~~~--~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~--~~ 385 (958)
+|.++++ +++.. .+.-+ .... .+.++|||+++++...... ....++|++|..+++..+.+.. .+
T Consensus 229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-------~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-------KDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-------TTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-------cCCCceEEEEEecCCceeEEEEEeCC
Confidence 7999999 66432 33221 2222 2467999999888774100 0123477777666544332221 11
Q ss_pred c---cccCc---ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe--ecc-
Q 002164 386 L---AEDIP---IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDL- 456 (958)
Q Consensus 386 ~---~~~~p---~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~- 456 (958)
. ....| ..|.++......+.+||||+.|++. + ...+.|.++++ .+.++.+.+.. ..+
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-n-----------rg~d~VavfdV--~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-L-----------WGIGEVRQYDI--SNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-E-----------TTTTEEEEEEC--SSTTSCEEEEEEECBTT
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEE-e-----------CCCCEEEEEEe--cCCCCcEEEEEEEeCCe
Confidence 1 11111 1122222346789999999998884 1 23467888886 23344444421 111
Q ss_pred --------------ccCceeeecCCceEEEEE
Q 002164 457 --------------RYGGISWCDDSLALVYES 474 (958)
Q Consensus 457 --------------~~~~~~~spDg~~l~~~~ 474 (958)
.-..+.+||||++|+.+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 236789999999998875
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=116.77 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=87.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH-HHHH-HCCcEEEEcCCCCCC-CCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWL-ARGFAILGGPTTPII-GEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la-~~G~~vl~~~~~~~~-G~G~ 728 (958)
+...+|.|++.... .++|+||++|||++..+... .+. +...+ ..++ ..|++|+.++||... |+..
T Consensus 98 l~l~v~~P~~~~~~--~~~Pv~v~iHGGg~~~g~~~--------~~~--~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~ 165 (534)
T 1llf_A 98 LTINVVRPPGTKAG--ANLPVMLWIFGGGFEIGSPT--------IFP--PAQMVTKSVLMGKPIIHVAVNYRVASWGFLA 165 (534)
T ss_dssp CEEEEEECTTCCTT--CCEEEEEEECCSTTTSCCGG--------GSC--CHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred eEEEEEECCCCCCC--CCceEEEEEeCCCcccCCCc--------ccC--chHHHHHHHhcCCCEEEEEeCCCCCCCCCCC
Confidence 55578899764332 34899999999976544321 111 11111 1222 368999998886432 2211
Q ss_pred cc--cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEeccC
Q 002164 729 EE--ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (958)
Q Consensus 729 ~~--~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (958)
.. .....+...+.|+.+|++|++++ ...|++||.|+|+|+||.+++.++... +.+|+++|+.+|.
T Consensus 166 ~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 166 GDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 10 01123346789999999999986 237999999999999999888777653 4689999999984
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-05 Score=85.34 Aligned_cols=119 Identities=12% Similarity=-0.063 Sum_probs=61.0
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEE-eccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
..+..+||| |+++..... .+..++.+.++|.++.++.. +....... .-...+.|+||++.+
T Consensus 141 h~~~~~pdG--i~Vs~~g~~------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~----------~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 141 HTVHCGPDA--IYISALGNE------EGEGPGGILMLDHYSFEPLGKWEIDRGDQ----------YLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEEEECSSC--EEEEEEEET------TSCSCCEEEEECTTTCCEEEECCSBCTTC----------CCCCCEEEETTTTEE
T ss_pred cceeECCCe--EEEEcCCCc------CCCCCCeEEEEECCCCeEEEEEccCCCCc----------cccceEEECCCCCEE
Confidence 345689999 555554432 23345789999998665433 32111110 112357889999954
Q ss_pred eEEEEe------ccCCCcc-cccccCCeEEEEeCCCCCCCCc-eEEEee-c-cccCc--eeeecCCceEEEEEe
Q 002164 414 LYWAET------QDGGDAK-VEVTPRDIIYTQQAEPVQGEGP-EILHKL-D-LRYGG--ISWCDDSLALVYESW 475 (958)
Q Consensus 414 ~~~~~~------~~~~~~~-~~~~~~~~l~~~~~~~~~g~~~-~~l~~~-~-~~~~~--~~~spDg~~l~~~~~ 475 (958)
+. ++- ..|-... +.....+.|.+|+. ++++. ..+.-. . ..... ++|+|||++++....
T Consensus 203 vs-S~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~---~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 203 VS-SEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL---RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EE-CBCCCHHHHTTCCCTTTHHHHSCCEEEEEET---TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred EE-ccCcCccccccccchhhhhhccCCEEEEEEC---CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 44 221 0110000 00023567999996 43332 223221 1 11122 346999998777665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-07 Score=97.73 Aligned_cols=251 Identities=10% Similarity=0.012 Sum_probs=132.1
Q ss_pred eEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecC-CCCCCCCCCCCCCCCceeeecCCcccccchhhhh
Q 002164 220 RVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL-LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDL 298 (958)
Q Consensus 220 ~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~ 298 (958)
.|+++|.++++...-...+.. - .+++||||+.++++... .++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-----P-~i~~spDg~~lyVan~~~~r~~------------------------------ 90 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-----S-LAVAGHSGSDFALASTSFARSA------------------------------ 90 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-----C-EEEECTTSSCEEEEEEEETTTT------------------------------
T ss_pred eEEEEECCCCeEEEEEeCCCC-----C-ceEECCCCCEEEEEcccccccc------------------------------
Confidence 899999999887654433332 2 68999999999987210 0000
Q ss_pred ccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCcee
Q 002164 299 LKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (958)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i 368 (958)
..+ ....|.++|+ +++. ..+.-+ .....+.+|||||++++..... ...+
T Consensus 91 -~G~---------~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~-----------~~~v 149 (368)
T 1mda_H 91 -KGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-----------SAAA 149 (368)
T ss_dssp -SSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS-----------SCEE
T ss_pred -cCC---------CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC-----------CCeE
Confidence 000 2355888998 7643 333211 2356789999999999885321 1256
Q ss_pred EE--EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec---cCC--------------------
Q 002164 369 GV--WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ---DGG-------------------- 423 (958)
Q Consensus 369 ~l--~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~---~~~-------------------- 423 (958)
.+ +|+.+ .+.+.........|. ....-+..++||+.+++..+.. ++.
T Consensus 150 ~V~~iD~~t--v~~i~v~~~~~~~p~------g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 150 GLSVPGASD--DQLTKSASCFHIHPG------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp EEEETTTEE--EEEEECSSCCCCEEE------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEEchhh--ceEEECCCceEEccC------CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 66 67655 333321100000000 1111234556666544432210 000
Q ss_pred -CcccccccCCeEEEEeCCCCCCCCceEEEee----------ccc---cCceeeecCCceEEEEEe-c-c-----ccceE
Q 002164 424 -DAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------DLR---YGGISWCDDSLALVYESW-Y-K-----TRRTR 482 (958)
Q Consensus 424 -~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------~~~---~~~~~~spDg~~l~~~~~-~-~-----~~~~~ 482 (958)
...+..+. +.++++|. .++..+.+... .+. ...+.++|||+++++..+ . . . ..
T Consensus 222 ~~~~~~vs~-~~V~viD~---~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~--~~ 295 (368)
T 1mda_H 222 PGMLVWAVA-SSILQGDI---PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA--EN 295 (368)
T ss_dssp TTEEEECBS-SCCEEEEC---CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE--EE
T ss_pred CCEEEEEcC-CEEEEEEC---CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC--CC
Confidence 00011122 56777774 33332222110 011 122689999999888755 2 1 1 23
Q ss_pred EEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCC
Q 002164 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g 562 (958)
+.++|+.+.+.......... ..+ +.|+|||+++++.... ....|.++|++++
T Consensus 296 ~~ViD~~t~~vv~~i~vg~~---p~g------i~~s~Dg~~l~va~~~-------------------~~~~VsVID~~t~ 347 (368)
T 1mda_H 296 TSSVTASVGQTSGPISNGHD---SDA------IIAAQDGASDNYANSA-------------------GTEVLDIYDAASD 347 (368)
T ss_dssp EEEEESSSCCEEECCEEEEE---ECE------EEECCSSSCEEEEEET-------------------TTTEEEEEESSSC
T ss_pred EEEEECCCCeEEEEEECCCC---cce------EEECCCCCEEEEEccC-------------------CCCeEEEEECCCC
Confidence 55899888521111111111 112 7899999988877631 0136999999998
Q ss_pred ceEEEec
Q 002164 563 SKERIWE 569 (958)
Q Consensus 563 ~~~~l~~ 569 (958)
+...-..
T Consensus 348 kvv~~I~ 354 (368)
T 1mda_H 348 QDQSSVE 354 (368)
T ss_dssp EEEEECC
T ss_pred cEEEEEE
Confidence 8765554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.2e-06 Score=92.49 Aligned_cols=268 Identities=11% Similarity=0.044 Sum_probs=153.3
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
.+++||++|+... ....|.+|++.+++........... +..+.|+ ++.|+...
T Consensus 124 ~~~~~g~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~~------------ 176 (445)
T 2ovr_B 124 CLQFCGNRIVSGS---------DDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMR--DNIIISGS------------ 176 (445)
T ss_dssp EEEEETTEEEEEE---------TTSCEEEEETTTCCEEEECCCCSSC----EEEEEEE--TTEEEEEE------------
T ss_pred EEEEcCCEEEEEE---------CCCcEEEEECCCCcEEEEEcCCCCC----EEEEEec--CCEEEEEe------------
Confidence 5778899988855 2568999999988766544433322 6677776 44666541
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-ccccccccCCCCcEEEEEee
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
..+.|.++++ +|+.. .+... ..+..+.| +++.|+..+.
T Consensus 177 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~ 217 (445)
T 2ovr_B 177 -------------------------------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSR 217 (445)
T ss_dssp -------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeC
Confidence 2245778888 66533 34333 55666667 4667776663
Q ss_pred cCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~ 430 (958)
++.+.+||+.++.. ..+..+. ..+..+.| ||+.++.. +
T Consensus 218 -------------dg~i~~wd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~l~~~-------------~ 256 (445)
T 2ovr_B 218 -------------DATLRVWDIETGQCLHVLMGHV-------------AAVRCVQY--DGRRVVSG-------------A 256 (445)
T ss_dssp -------------TSEEEEEESSSCCEEEEEECCS-------------SCEEEEEE--CSSCEEEE-------------E
T ss_pred -------------CCEEEEEECCCCcEEEEEcCCc-------------ccEEEEEE--CCCEEEEE-------------c
Confidence 34899999985543 3332211 23345555 77776653 4
Q ss_pred cCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCC
Q 002164 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (958)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (958)
..+.|.+|++ ..+.....+......+..+.| |++.|+.....+. |.++++.++ +...........
T Consensus 257 ~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~----i~i~d~~~~--~~~~~~~~~~~~----- 321 (445)
T 2ovr_B 257 YDFMVKVWDP--ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS----IRVWDVETG--NCIHTLTGHQSL----- 321 (445)
T ss_dssp TTSCEEEEEG--GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC----EEEEETTTC--CEEEEECCCCSC-----
T ss_pred CCCEEEEEEC--CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe----EEEEECCCC--CEEEEEcCCccc-----
Confidence 4567889986 223233333334455666677 8888877654432 555666553 222222222111
Q ss_pred CCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCcccc
Q 002164 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (958)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (958)
...++++++.++....+ ..|.+||+.+++.......... ....+. +
T Consensus 322 ---v~~~~~~~~~l~~~~~d---------------------g~i~vwd~~~~~~~~~~~~~~~-~~~~v~---------~ 367 (445)
T 2ovr_B 322 ---TSGMELKDNILVSGNAD---------------------STVKIWDIKTGQCLQTLQGPNK-HQSAVT---------C 367 (445)
T ss_dssp ---EEEEEEETTEEEEEETT---------------------SCEEEEETTTCCEEEEECSTTS-CSSCEE---------E
T ss_pred ---EEEEEEeCCEEEEEeCC---------------------CeEEEEECCCCcEEEEEccCCC-CCCCEE---------E
Confidence 13456677776665421 2599999988876655443211 000111 2
Q ss_pred ccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 591 LYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
++.+++.++.... ...+.++++.+++..
T Consensus 368 ~~~~~~~l~s~~~----dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 368 LQFNKNFVITSSD----DGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEECSSEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEECCCEEEEEeC----CCeEEEEECCCCcee
Confidence 3334555444332 356899998887643
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=116.42 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=86.4
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHH-HHHH-HCCcEEEEcCCCCCC-CCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLWL-ARGFAILGGPTTPII-GEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la-~~G~~vl~~~~~~~~-G~G~ 728 (958)
+...+|.|.+.... .++|+||++|||++..+.. ..+. +...+ +.++ ..|++|+.++|+... |+..
T Consensus 106 l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~--~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~ 173 (544)
T 1thg_A 106 LYLNVFRPAGTKPD--AKLPVMVWIYGGAFVYGSS--------AAYP--GNSYVKESINMGQPVVFVSINYRTGPFGFLG 173 (544)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCCTTCCSGG--------GGCC--SHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred eEEEEEeCCCCCCC--CCCcEEEEECCCccccCCc--------cccC--chHHHHHHhhcCCCEEEEeCCCCCCcccCCC
Confidence 44578889764322 3599999999997655432 1111 11112 1222 258999998886432 2111
Q ss_pred ccc--chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEeccC
Q 002164 729 EEA--NDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (958)
Q Consensus 729 ~~~--~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (958)
... ....+...+.|+.+|++|++++- ..|++||.|+|+|+||.+++.++... ..+|+++|+.+|.
T Consensus 174 ~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~ 251 (544)
T 1thg_A 174 GDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence 100 01223456899999999999862 37999999999999999998887752 4689999999985
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-06 Score=90.55 Aligned_cols=190 Identities=16% Similarity=0.126 Sum_probs=120.5
Q ss_pred CCeEEEEEeeccccCCCCCceEEEEEcCCCceeec-----cCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL-----FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l-----t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
|.+|+|+. ...|++++++++..+.+ ...+.. ....++|.++++.|+++..
T Consensus 1 ~~~l~~~~----------~~~I~~~~~~g~~~~~~~~~~~~~~~~~----~~~gi~~d~~~~~ly~~d~----------- 55 (267)
T 1npe_A 1 GTHLLFAQ----------TGKIERLPLERNTMKKTEAKAFLHIPAK----VIIGLAFDCVDKVVYWTDI----------- 55 (267)
T ss_dssp CEEEEEEE----------EEEEEEEEESSSCBCGGGCEEEEEEEEE----EEEEEEEETTTTEEEEEET-----------
T ss_pred CcEEEEEc----------CCeEEEEEecCcccccccceeeecCCCC----cEEEEEEecCCCEEEEEEC-----------
Confidence 56788865 34799999988654321 111111 1458899998888887610
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC-CC-ccccccccCCCCcEEEEEee
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~-~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
....|+++++ ++..+.+. .. .....++++|+++.|+++..
T Consensus 56 -------------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 56 -------------------------------------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp -------------------------------------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred -------------------------------------CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC
Confidence 2346889998 44444333 22 45677889999998888763
Q ss_pred cCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 431 (958)
. .+.|.+++++++..+.+..... ..+..++++|++..|++. +.. ..
T Consensus 99 ~------------~~~I~~~~~~g~~~~~~~~~~~------------~~P~~i~vd~~~g~lyv~-~~~---------~~ 144 (267)
T 1npe_A 99 Q------------LDRIEVAKMDGTQRRVLFDTGL------------VNPRGIVTDPVRGNLYWT-DWN---------RD 144 (267)
T ss_dssp T------------TTEEEEEETTSCSCEEEECSSC------------SSEEEEEEETTTTEEEEE-ECC---------SS
T ss_pred C------------CCEEEEEEcCCCCEEEEEECCC------------CCccEEEEeeCCCEEEEE-ECC---------CC
Confidence 3 2478899998765444432110 234688999988877763 211 11
Q ss_pred CCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 432 RDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...|++++. +|...+.+.... .....+++++|++.|+++.... .+|+++++++.
T Consensus 145 ~~~I~~~~~---dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~---~~I~~~~~~g~ 199 (267)
T 1npe_A 145 NPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT---HRAECLNPAQP 199 (267)
T ss_dssp SCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTEE
T ss_pred CcEEEEEec---CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC---CEEEEEecCCC
Confidence 357888885 665555553222 2345689999999988875433 47999998863
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-08 Score=117.39 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=86.8
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPI 723 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~ 723 (958)
.+.|. +...+|.|..... ...++|+||++|||.+..+..... .+..........|+. .|++|+.++||-.
T Consensus 76 ~sedc--l~lnv~~P~~~~~-~~~~~PV~v~iHGGg~~~Gs~~~~------~~~~~~~~~~~~la~~~~vvvV~~nYRLg 146 (579)
T 2bce_A 76 GNEDC--LYLNIWVPQGRKE-VSHDLPVMIWIYGGAFLMGASQGA------NFLSNYLYDGEEIATRGNVIVVTFNYRVG 146 (579)
T ss_dssp SCSCC--CEEEEEEEECSSS-CCCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCCH
T ss_pred CCCCC--CEEEEEECCCCCC-CCCCCeEEEEECCCcccCCCCCcc------ccccccccChHHHhcCCCEEEEEeCCccc
Confidence 34455 4456788875321 123489999999997654432110 000000000234554 5799999888722
Q ss_pred -CCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccC
Q 002164 724 -IGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (958)
Q Consensus 724 -~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (958)
.|+.............+.|+.+|++|++++ ...|+++|.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 147 ~~Gfl~~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 147 PLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp HHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 232221111111123578999999999886 23799999999999999999988775 34689999999875
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=114.36 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCC-CCCCCCCc-------ccchhhHHH
Q 002164 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTT-PIIGEGDE-------EANDRFVEQ 738 (958)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~-~~~G~G~~-------~~~~~~~~~ 738 (958)
.++|+||++|||++..+...... +. ...|++ .|++|+.++|| +..|+... ......+..
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~~~~------~~------~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~ 206 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSATLDI------YN------ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV 206 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTTCGG------GC------CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH
T ss_pred CCCCEEEEECCCcccCCCCCCCC------CC------chhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcc
Confidence 35899999999976544321111 11 234554 79999998887 22233211 011112345
Q ss_pred HHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCC
Q 002164 739 LVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (958)
Q Consensus 739 ~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (958)
.+.|+.+|++|++++- ..|+++|.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 207 gl~D~~~al~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 207 GLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 6889999999999862 36999999999999999998887753 36899999999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-06 Score=91.50 Aligned_cols=240 Identities=9% Similarity=0.052 Sum_probs=130.0
Q ss_pred eceeEEEccCCCCCCceeeeccC---CCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec-cCCC
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGF---PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL-FQSP 238 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~---~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l-t~~~ 238 (958)
+.|++++..+ +..+.+... .....+....++||+..|+++.. ...|++++.+ |+.+.+ ....
T Consensus 46 ~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~d~~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 46 GEILRIDLKT----GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVVQTD-GTFEEIAKKDS 111 (314)
T ss_dssp CEEEEECTTT----CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEEETT-SCEEECCSBCT
T ss_pred CEEEEEeCCC----CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEEeCC-CCEEEEEeccC
Confidence 3677877543 333333210 01124667889999334544331 2379999998 777666 4322
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
.......+..+++++||++.+......... . +...... .....|++
T Consensus 112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~--~-------------------------~~~~~~~-------~~~~~l~~ 157 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAP--A-------------------------DYTRSMQ-------EKFGSIYC 157 (314)
T ss_dssp TSCBCBCCCEEEECTTSCEEEEECBCBCTT--S-------------------------CCCBTTS-------SSCEEEEE
T ss_pred CCccccCCcCEEECCCCCEEEEecCccccc--c-------------------------ccccccc-------CCCCeEEE
Confidence 110011255788999997554331110000 0 0000000 02346888
Q ss_pred EEcCCeeeecCCC-ccccccccC----CCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEE---EeccCCcccc
Q 002164 319 VSLDGTVKEIGPP-AVYTSLDPS----PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVR---ELCDLPLAED 389 (958)
Q Consensus 319 ~~~~g~~~~l~~~-~~~~~~~~S----pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~---~l~~~~~~~~ 389 (958)
++.+|+...+... .....++|+ |||+.|++.... .+.|++|+++ .+... .+...+...
T Consensus 158 ~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~- 224 (314)
T 1pjx_A 158 FTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH- 224 (314)
T ss_dssp ECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS-
T ss_pred ECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECCCCCccccceEEEECCCCC-
Confidence 8876655544332 344677899 999988877532 2478999876 33321 111111100
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCC-CCCceEEEeeccccCceeeecCCc
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ-GEGPEILHKLDLRYGGISWCDDSL 468 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~~~~~~~~~~spDg~ 468 (958)
...+..+.+++||+ +++. . ...+.|++++. + +.....+.........++|+|||+
T Consensus 225 --------~~~p~~i~~d~~G~-l~v~-~-----------~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 225 --------EGGADGMDFDEDNN-LLVA-N-----------WGSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp --------SCEEEEEEEBTTCC-EEEE-E-----------ETTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred --------CCCCCceEECCCCC-EEEE-E-----------cCCCEEEEEcC---CCCcEeEEEeCCCCCceeEEECCCCC
Confidence 01245688999995 3331 1 12457888884 4 444444443334566789999999
Q ss_pred eEEEEEeccccceEEEEEcCCC
Q 002164 469 ALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|+++...+ ..|++++++.
T Consensus 281 ~l~v~~~~~---~~l~~~~~~~ 299 (314)
T 1pjx_A 281 TIFVTEHEN---NAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTT---TEEEEEECSS
T ss_pred EEEEEeCCC---CeEEEEeCCC
Confidence 887775433 3588888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-06 Score=87.45 Aligned_cols=224 Identities=11% Similarity=0.044 Sum_probs=133.5
Q ss_pred ceEEEEEcCC-eeee------cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC
Q 002164 314 TQLVLVSLDG-TVKE------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (958)
Q Consensus 314 ~~l~~~~~~g-~~~~------l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~ 385 (958)
..|++++++| ..+. +... .....++|+|+++.|+++... .+.|++++++++..+.+....
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------------~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECTT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------------CCEEEEEecCCCCcEEEEECC
Confidence 4588888844 3221 1111 345688999999999888633 348999999876554433211
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeee
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWC 464 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~s 464 (958)
...+..++++|++..|++. + ...+.|++++. +|...+.+.... .....++++
T Consensus 78 ------------~~~p~~ia~d~~~~~lyv~-d-----------~~~~~I~~~~~---~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 78 ------------LGSPEGIALDHLGRTIFWT-D-----------SQLDRIEVAKM---DGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp ------------CCCEEEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEECSSCSSEEEEEEE
T ss_pred ------------CCCccEEEEEecCCeEEEE-E-----------CCCCEEEEEEc---CCCCEEEEEECCCCCccEEEEe
Confidence 0245688999998877763 2 23457888885 665555553322 234568999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCC
Q 002164 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~ 544 (958)
|++..|+++.... ...+|+++++++. ....+.........+ +++++++++|++....
T Consensus 131 ~~~g~lyv~~~~~-~~~~I~~~~~dg~--~~~~~~~~~~~~P~g------ia~d~~~~~lyv~d~~-------------- 187 (267)
T 1npe_A 131 PVRGNLYWTDWNR-DNPKIETSHMDGT--NRRILAQDNLGLPNG------LTFDAFSSQLCWVDAG-------------- 187 (267)
T ss_dssp TTTTEEEEEECCS-SSCEEEEEETTSC--CCEEEECTTCSCEEE------EEEETTTTEEEEEETT--------------
T ss_pred eCCCEEEEEECCC-CCcEEEEEecCCC--CcEEEEECCCCCCcE------EEEcCCCCEEEEEECC--------------
Confidence 9988888875432 1257999988774 223332211111111 6789998888877521
Q ss_pred CCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 545 ATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 545 ~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
...|+++|++++..+.+...... . ..+..|++.+++.... ...+++++..+|+..
T Consensus 188 ------~~~I~~~~~~g~~~~~~~~~~~~-----P---------~gi~~d~~~lyva~~~---~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 188 ------THRAECLNPAQPGRRKVLEGLQY-----P---------FAVTSYGKNLYYTDWK---TNSVIAMDLAISKEM 242 (267)
T ss_dssp ------TTEEEEEETTEEEEEEEEECCCS-----E---------EEEEEETTEEEEEETT---TTEEEEEETTTTEEE
T ss_pred ------CCEEEEEecCCCceEEEecCCCC-----c---------eEEEEeCCEEEEEECC---CCeEEEEeCCCCCce
Confidence 23699999976554444321110 1 1234566666664432 246888887776543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.5e-07 Score=94.35 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCCceecCC----CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccc--eeeEeceeEEEccCCCCCCceeeec
Q 002164 110 PLPALSFSPQ----RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSR--MSFYTGIGIHQLFPDGKLGQEIEIQ 183 (958)
Q Consensus 110 ~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~dg~~~~~~~lt 183 (958)
.+..+++||| |++++..... ..++.+. .+..... .+.+..|.+|++..||. ....++
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~-------------~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~ 175 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNI--KAVLGLT-------------KRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQF 175 (356)
T ss_dssp EEEEECC------CCEEEEEEEEE--EEEEEET-------------TTEEEEEESSSTTCEEEEEEECTTSC--EEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCCe--EEEEecC-------------CCcEEEecccCCCCcEEEEEECCCCc--eeeeec
Confidence 5678899999 9999886542 1111111 1100000 00135788999876662 233333
Q ss_pred cCCCCCcccceeecC---CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEE
Q 002164 184 GFPDGAKLNFVTWSQ---DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (958)
Q Consensus 184 ~~~~~~~~~~~~wSP---DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (958)
.++ ..+...+||| ||+.|+-.+ ....|.+||+++|+..+........ ...+...+|||||+.++.
T Consensus 176 ~~~--~~v~~l~fs~~~g~~~~LaSgS---------~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 176 LMP--PEETILTFAEVQGMQEALLGTT---------IMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp ECC--CSSCEEEEEEEETSTTEEEEEE---------TTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEE
T ss_pred cCC--CceeeEEeeccCCCCceEEEec---------CCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEE
Confidence 333 4567788888 778777754 3678999999998865443222111 011345689999998876
Q ss_pred E
Q 002164 261 T 261 (958)
Q Consensus 261 ~ 261 (958)
.
T Consensus 244 ~ 244 (356)
T 2w18_A 244 L 244 (356)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.3e-08 Score=104.13 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=102.0
Q ss_pred HCCcEEEEcCCCCCCCCCCc-----ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----
Q 002164 710 ARGFAILGGPTTPIIGEGDE-----EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---- 780 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~-----~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---- 780 (958)
..+|.|+. .+.+|+|.+ ...........+|+.+.++.+.. ..++.++|||+||.+|..+|.+.
T Consensus 115 ~~~~~v~~---~d~~G~g~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~-----~~p~~l~G~S~GG~vA~~~A~~l~~~~ 186 (319)
T 2hfk_A 115 QEERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAILRAAG-----DAPVVLLGHAGGALLAHELAFRLERAH 186 (319)
T ss_dssp TTTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEE---ecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHHhh
Confidence 37899999 555666665 33333456666666666554421 24799999999999999999875
Q ss_pred CCceeEEEEeccCCCCCCCCC-C-------------cccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 781 PHLFCCGIARSGAYNRTLTPF-G-------------FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
++.+++++++++......... . +.............|...-.......+++|+|+++| .|..++
T Consensus 187 g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~- 264 (319)
T 2hfk_A 187 GAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGD- 264 (319)
T ss_dssp SCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSC-
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCC-
Confidence 456899988876422110000 0 000000000000111110001123678899999999 999887
Q ss_pred ChHH-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 847 LTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 847 ~~~~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
... ...+.+. ....++++.+|+ +|.....+....+.+.+.+||.+..
T Consensus 265 -~~~~~~~~~~~---~~~~~~~~~v~g-~H~~~~~e~~~~~~~~i~~~L~~~~ 312 (319)
T 2hfk_A 265 -WQEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDAIE 312 (319)
T ss_dssp -CCGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -ccccccchhhc---CCCCCEEEEeCC-CcHHHHHHhHHHHHHHHHHHHHhcC
Confidence 544 2222111 123468888995 8974322467788888999998754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=91.87 Aligned_cols=192 Identities=8% Similarity=-0.009 Sum_probs=111.3
Q ss_pred CCCeEEEEEeeccccCCCCCceEEEEEcCCCceee-ccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002164 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (958)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (958)
++++|+.+.. ....|.++|+++++... +..... ...+++++|| .|+++..
T Consensus 52 ~~~~lyv~~~--------~~~~v~viD~~t~~~~~~i~~~~~------p~~i~~~~~g-~lyv~~~-------------- 102 (328)
T 3dsm_A 52 RDGIGWIVVN--------NSHVIFAIDINTFKEVGRITGFTS------PRYIHFLSDE-KAYVTQI-------------- 102 (328)
T ss_dssp ETTEEEEEEG--------GGTEEEEEETTTCCEEEEEECCSS------EEEEEEEETT-EEEEEEB--------------
T ss_pred ECCEEEEEEc--------CCCEEEEEECcccEEEEEcCCCCC------CcEEEEeCCC-eEEEEEC--------------
Confidence 4666666542 24689999999888743 422211 4578899999 5555510
Q ss_pred CCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCc------cccccccCCCCcEEEEE
Q 002164 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPA------VYTSLDPSPDEKYILIS 349 (958)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~------~~~~~~~SpDGk~l~~~ 349 (958)
....|+++|. +++.. .+..+. ....+++ ++++|++.
T Consensus 103 ----------------------------------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~ 146 (328)
T 3dsm_A 103 ----------------------------------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVN 146 (328)
T ss_dssp ----------------------------------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEE
T ss_pred ----------------------------------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEE
Confidence 1245888898 77544 332222 4445566 67777766
Q ss_pred eecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 429 (958)
... ..+.|.++|+++++........ ..+..+.++|||+ +++.. ..+...... .
T Consensus 147 ~~~-----------~~~~v~viD~~t~~~~~~i~~g-------------~~p~~i~~~~dG~-l~v~~-~~~~~~~~~-~ 199 (328)
T 3dsm_A 147 CWS-----------YQNRILKIDTETDKVVDELTIG-------------IQPTSLVMDKYNK-MWTIT-DGGYEGSPY-G 199 (328)
T ss_dssp ECT-----------TCCEEEEEETTTTEEEEEEECS-------------SCBCCCEECTTSE-EEEEB-CCBCTTCSS-C
T ss_pred cCC-----------CCCEEEEEECCCCeEEEEEEcC-------------CCccceEEcCCCC-EEEEE-CCCccCCcc-c
Confidence 421 1348999999876543321111 2345788999998 44421 111000000 0
Q ss_pred ccCCeEEEEeCCCCCCCCce-EEEee-ccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 430 TPRDIIYTQQAEPVQGEGPE-ILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~-~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.|+++|. ++++.. .+.-. ......++|+|||+.|++... .++++|++++
T Consensus 200 ~~~~~v~~id~---~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~ 254 (328)
T 3dsm_A 200 YEAPSLYRIDA---ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEAD 254 (328)
T ss_dssp BCCCEEEEEET---TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCS
T ss_pred cCCceEEEEEC---CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCC
Confidence 11367999995 444333 33221 124567899999999887632 5899998875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=97.06 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=93.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCC-----ce------eeccCCCCccccccccceEEecC-Ce
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-----KA------RPLFQSPDIYLNAIFDNFVWVNN-ST 256 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g-----~~------~~lt~~~~~~~~~~~~~~~wspD-G~ 256 (958)
..+...+|||||++|+..... +.....|.+|++.++ +. .++..... ..+..++|+|+ ++
T Consensus 93 ~~v~~l~~spdg~~lav~~~s-----gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMS-----SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG----GMVIDMKWNPTVPS 163 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEE-----TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG----GSEEEEEECSSCTT
T ss_pred CcccEEEEcCCCCEEEEEEec-----cCCCceEEEEEccccccCCcCCcceeeeeeccCCCC----CceEEEEECCCCCC
Confidence 358889999999999863210 334668889988754 11 11111111 22778999998 67
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-cc
Q 002164 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AV 333 (958)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~ 333 (958)
.|+... ....|.++|+ ++... ..... ..
T Consensus 164 ~las~s-------------------------------------------------~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 164 MVAVCL-------------------------------------------------ADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp EEEEEE-------------------------------------------------TTSCEEEEEESSSEEEEEEECGGGC
T ss_pred EEEEEE-------------------------------------------------CCCeEEEEEcCCCcceeeccCCCCc
Confidence 777651 2244777787 66332 22222 56
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..++|||||++|+..+.+ +.|.+||+++...+.+........ .....+..+.|++++..+
T Consensus 195 v~~v~wspdg~~lasgs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQN-------------GTVVQYLPTLQEKKVIPCPPFYES------DHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEEEECTTSSCEEEEETT-------------SCEEEECTTCCEEEEECCCTTCCT------TSCEEEEEEEEEETTEEE
T ss_pred eeEEEEcCCCCEEEEEcCC-------------CcEEEEccCCcccccccCCcccCC------CCceeEEEEEEecCceEE
Confidence 7899999999999988733 489999998554444433211100 001245679999988766
Q ss_pred eEE
Q 002164 414 LYW 416 (958)
Q Consensus 414 ~~~ 416 (958)
+..
T Consensus 256 ~~~ 258 (434)
T 2oit_A 256 IVY 258 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-06 Score=94.92 Aligned_cols=212 Identities=11% Similarity=0.082 Sum_probs=122.8
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
.+++||++|+.... ...|.+|++.+++........... +..++| |++.|+...
T Consensus 138 ~~~~d~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~sg~------------ 190 (435)
T 1p22_A 138 CLQYDDQKIVSGLR---------DNTIKIWDKNTLECKRILTGHTGS----VLCLQY--DERVIITGS------------ 190 (435)
T ss_dssp EEECCSSEEEEEES---------SSCEEEEESSSCCEEEEECCCSSC----EEEEEC--CSSEEEEEE------------
T ss_pred EEEECCCEEEEEeC---------CCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE--CCCEEEEEc------------
Confidence 45669999988653 568899999988876554433332 556666 888888661
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEEEEEee
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
..+.|.++++ +|+. ..+... ..+..+.|++ +.|+..+.
T Consensus 191 -------------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~ 231 (435)
T 1p22_A 191 -------------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSK 231 (435)
T ss_dssp -------------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEET
T ss_pred -------------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeC
Confidence 2245778888 6643 344433 6677888874 46666553
Q ss_pred cCCccccccCCCCCceeEEEeccCceEEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~ 430 (958)
++.|.+||+.++....+ .... +....+..+.| ||+.++.. +
T Consensus 232 -------------dg~i~vwd~~~~~~~~~~~~~~----------~~~~~v~~~~~--~~~~l~s~-------------~ 273 (435)
T 1p22_A 232 -------------DRSIAVWDMASPTDITLRRVLV----------GHRAAVNVVDF--DDKYIVSA-------------S 273 (435)
T ss_dssp -------------TSCEEEEECSSSSCCEEEEEEC----------CCSSCEEEEEE--ETTEEEEE-------------E
T ss_pred -------------CCcEEEEeCCCCCCceeeeEec----------CCCCcEEEEEe--CCCEEEEE-------------e
Confidence 34899999985432211 1110 11123345556 77766652 4
Q ss_pred cCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCC
Q 002164 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (958)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (958)
..+.|.+||+ ..+.....+......+..+.| +++.|+....++ .|.++|+.++ +...........+..
T Consensus 274 ~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~--~~~~~~~~h~~~v~~-- 341 (435)
T 1p22_A 274 GDRTIKVWNT--STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECG--ACLRVLEGHEELVRC-- 341 (435)
T ss_dssp TTSEEEEEET--TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTC--CEEEEECCCSSCEEE--
T ss_pred CCCeEEEEEC--CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCC--CEEEEEeCCcCcEEE--
Confidence 4667899996 233333444444555555666 566776665433 2555666653 333333333333222
Q ss_pred CCCceEeccCCceEEEEe
Q 002164 511 GSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 511 ~~~~~~~spdG~~l~~~~ 528 (958)
+.| ||++|+...
T Consensus 342 ----~~~--~~~~l~sg~ 353 (435)
T 1p22_A 342 ----IRF--DNKRIVSGA 353 (435)
T ss_dssp ----EEC--CSSEEEEEE
T ss_pred ----EEe--cCCEEEEEe
Confidence 334 788777665
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-05 Score=90.33 Aligned_cols=222 Identities=8% Similarity=-0.088 Sum_probs=122.0
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eec----cCCC
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPL----FQSP 238 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~l----t~~~ 238 (958)
.|+++++.+ +....+.. ...... ++|+|||+.|+.+.. .+...||+++.+++.. +.+ ....
T Consensus 153 ~I~~id~~~----g~~~~~~~--~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 153 RVRLISVDD----NKVTTVHP--GFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp EEEEEETTT----TEEEEEEE--TCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred cEEEEECCC----CEEEEeec--cCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEcCCCceeEEeeeccchhc
Confidence 577877743 44444422 122334 999999998777542 2233899999887654 233 1011
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
.. ...++++|++..|++.. ...+|++
T Consensus 219 ~~-----p~~iav~p~~g~lyv~d-------------------------------------------------~~~~I~~ 244 (409)
T 3hrp_A 219 GK-----IGAVALDETEEWLYFVD-------------------------------------------------SNKNFGR 244 (409)
T ss_dssp SC-----CCBCEECTTSSEEEEEC-------------------------------------------------TTCEEEE
T ss_pred CC-----cEEEEEeCCCCeEEEEE-------------------------------------------------CCCcEEE
Confidence 11 45789999555566550 1235888
Q ss_pred EEc-CCeeeec----CCC-ccc--c-ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC---c
Q 002164 319 VSL-DGTVKEI----GPP-AVY--T-SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP---L 386 (958)
Q Consensus 319 ~~~-~g~~~~l----~~~-~~~--~-~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~---~ 386 (958)
++. ++....+ ..+ ... . .++|+|++..|+++... .+.|+.++.++.. ..+.... .
T Consensus 245 ~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~~-~~~~g~~~~~g 311 (409)
T 3hrp_A 245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGEC-EWFCGSATQKT 311 (409)
T ss_dssp EETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCCE-EEEEECTTCCS
T ss_pred EECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCCE-EEEEeCCCCCC
Confidence 888 6654444 222 111 2 78999988888777532 3478899888763 3332211 0
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccc-cCCeEEEEeCCCCCCCCceEEEeec----------
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT-PRDIIYTQQAEPVQGEGPEILHKLD---------- 455 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~g~~~~~l~~~~---------- 455 (958)
....+ ........+..++++|||+ |++ ++ . ....|++++. ..+....+....
T Consensus 312 ~~dg~-~~~~~~~~P~gia~d~dG~-lyv-ad-----------~~~~~~I~~~~~---~~G~v~~~~g~~~~~g~~~g~~ 374 (409)
T 3hrp_A 312 VQDGL-REEALFAQPNGMTVDEDGN-FYI-VD-----------GFKGYCLRKLDI---LDGYVSTVAGQVDVASQIDGTP 374 (409)
T ss_dssp CBCEE-GGGCBCSSEEEEEECTTCC-EEE-EE-----------TTTTCEEEEEET---TTTEEEEEEECTTCBSCCCBST
T ss_pred cCCCc-ccccEeCCCeEEEEeCCCC-EEE-Ee-----------CCCCCEEEEEEC---CCCEEEEEeCCCCCCCcCCCCh
Confidence 00000 0000012357899999998 544 22 2 3557888884 334444443320
Q ss_pred -----cccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 456 -----LRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 456 -----~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
.....+++++|| .|+++. ..+ .+|++++
T Consensus 375 ~~~~~~~P~giavd~~g-~lyVad-~~n--~~Ir~i~ 407 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEG-GYWIAE-AWG--KAIRKYA 407 (409)
T ss_dssp TTCCBSSEEEEEECSSS-EEEEEE-STT--CEEEEEE
T ss_pred hceEeCCceEEEEcCCC-CEEEEE-CCC--CeEEEEE
Confidence 123357888885 444443 222 4566654
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-08 Score=113.63 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=84.3
Q ss_pred EEEEEEecCCCCCC-CCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-CcEEEEcCCCCCC-CCCC
Q 002164 652 LSATLYLPPGYDPS-KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPII-GEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~-~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~vl~~~~~~~~-G~G~ 728 (958)
|...+|.|...... ...++|+||++|||.+..+... .+. ...|+++ |++|+.++||-.. |+..
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~--------~~~------~~~la~~~~~vvv~~~YRl~~~Gfl~ 177 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGN--------LYD------GSVLASYGNVIVITVNYRLGVLGFLS 177 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGG--------GSC------CHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCC--------ccC------chhhhccCCEEEEEeCCcCcccccCc
Confidence 55578889753211 1234899999999976554321 121 1245654 6999998886321 2211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEeccC
Q 002164 729 EEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (958)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (958)
.......+...+.|+.+|++|+.++ -..|+++|.|+|+|+||.++..++.... .+|+.+|+.+|.
T Consensus 178 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 178 TGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 1111112245689999999999986 2379999999999999999998887543 569999998874
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.3e-07 Score=93.08 Aligned_cols=164 Identities=13% Similarity=0.030 Sum_probs=90.5
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCC 786 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a 786 (958)
..+|.|+.+++ .|++. ..+++.+.++.+ . ...++.++|||+||.++..++.+. ++++++
T Consensus 46 ~~~~~v~~~d~---~g~~~----------~~~~~~~~i~~~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~ 107 (244)
T 2cb9_A 46 NHKAAVYGFHF---IEEDS----------RIEQYVSRITEI---Q--PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSD 107 (244)
T ss_dssp TTTSEEEEECC---CCSTT----------HHHHHHHHHHHH---C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCceEEEEcC---CCHHH----------HHHHHHHHHHHh---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccE
Confidence 46899999554 45432 233444444332 1 125799999999999999998864 567888
Q ss_pred EEEeccCCCCCC-CCCCccccc----chhh-h----cHHHHHhcCc-ccccCCCCCCEEEEeeC--CCCCCCCChHHHHH
Q 002164 787 GIARSGAYNRTL-TPFGFQNED----RTLW-E----ATSTYVEMSP-FMSANKLKKPILLVHGE--EDNNSGTLTMQSDR 853 (958)
Q Consensus 787 ~v~~~~~~~~~~-~~~~~~~~~----~~~~-~----~~~~~~~~sp-~~~~~~~~~P~Lii~G~--~D~~v~~~~~~~~~ 853 (958)
+|.+++...... ......... .... . ....+..+.. .....++++|+++++|+ +|. ++ +.....
T Consensus 108 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~-~~--~~~~~~ 184 (244)
T 2cb9_A 108 FIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLINEGRIKSNIHFIEAGIQTET-SG--AMVLQK 184 (244)
T ss_dssp EEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHHHHHHHHHCCCCSCBSSEEEEEECSBCSCC-CH--HHHTTS
T ss_pred EEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCEEEEEccCcccc-cc--ccchhH
Confidence 888876432100 000000000 0000 0 0011111110 12346688999999999 887 33 333222
Q ss_pred HHHHHHhCCCcEEEEEeCCCCcc-CCCcccHHHHHHHHHHHHHHhh
Q 002164 854 FFNALKGHGALCRLVILPFESHG-YAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 854 ~~~~l~~~g~~~~~~~~p~~~H~-~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.+ .....+++..+|+ +|. +...+....+.+.+.+||.+..
T Consensus 185 w~~---~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~~~L~~~~ 226 (244)
T 2cb9_A 185 WQD---AAEEGYAEYTGYG-AHKDMLEGEFAEKNANIILNILDKIN 226 (244)
T ss_dssp SGG---GBSSCEEEEECSS-BGGGTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HHH---hcCCCCEEEEecC-ChHHHcChHHHHHHHHHHHHHHhcCc
Confidence 221 1123589999997 893 2234556677777888887543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-06 Score=94.22 Aligned_cols=105 Identities=7% Similarity=0.069 Sum_probs=68.6
Q ss_pred ccccccccCCC-CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++|+|+ ++.|+..+. ++.+.+||+.++.... ... .....+..++|+|||
T Consensus 150 ~~V~~v~~~p~~~~~las~s~-------------Dg~v~iwD~~~~~~~~-~~~-----------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLA-------------DGSIAVLQVTETVKVC-ATL-----------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEET-------------TSCEEEEEESSSEEEE-EEE-----------CGGGCEEEEEECTTS
T ss_pred CceEEEEECCCCCCEEEEEEC-------------CCeEEEEEcCCCccee-ecc-----------CCCCceeEEEEcCCC
Confidence 66889999998 667776653 3489999998663321 111 011356789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------ccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-------~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
+.|+.. +..+.|.+|+. .+.....+... ...+..+.|++++..++.....+
T Consensus 205 ~~lasg-------------s~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 205 KQLAVG-------------KQNGTVVQYLP---TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp SCEEEE-------------ETTSCEEEECT---TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEE-------------cCCCcEEEEcc---CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 998873 44567889985 43333333221 12567799999998876655443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.5e-06 Score=90.37 Aligned_cols=231 Identities=11% Similarity=0.049 Sum_probs=129.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC-ccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYL 242 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~-~~~ 242 (958)
.|.++|..+ + ....++. ........+++||| +|+.+.. ....|+++|+++++.......+. ...
T Consensus 65 ~v~viD~~t-~--~~~~~i~---~~~~p~~i~~~~~g-~lyv~~~--------~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 65 VIFAIDINT-F--KEVGRIT---GFTSPRYIHFLSDE-KAYVTQI--------WDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp EEEEEETTT-C--CEEEEEE---CCSSEEEEEEEETT-EEEEEEB--------SCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEEECcc-c--EEEEEcC---CCCCCcEEEEeCCC-eEEEEEC--------CCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 688888754 2 2224443 23356778899998 5544321 25689999999987653322222 000
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-
Q 002164 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~- 321 (958)
......+++ +++.|+++... ....|+++|+
T Consensus 130 ~~~p~~i~~--~~~~lyv~~~~-----------------------------------------------~~~~v~viD~~ 160 (328)
T 3dsm_A 130 SGSTEQMVQ--YGKYVYVNCWS-----------------------------------------------YQNRILKIDTE 160 (328)
T ss_dssp TCBCCCEEE--ETTEEEEEECT-----------------------------------------------TCCEEEEEETT
T ss_pred CCCcceEEE--ECCEEEEEcCC-----------------------------------------------CCCEEEEEECC
Confidence 001335666 44455554100 1245889998
Q ss_pred CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccC
Q 002164 322 DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (958)
Q Consensus 322 ~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (958)
+++.. .+..+.....+.++|||+ ++++....... .+.....+.|+++|.++++.......+.. ..
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~~~v~~id~~t~~v~~~~~~~~g-----------~~ 226 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEAPSLYRIDAETFTVEKQFKFKLG-----------DW 226 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCCCEEEEEETTTTEEEEEEECCTT-----------CC
T ss_pred CCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccC--CccccCCceEEEEECCCCeEEEEEecCCC-----------CC
Confidence 77543 343334456788999998 55554321000 00011135899999987665432222110 23
Q ss_pred cceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce--E-EEeeccccCceeeecCCceEEEEEecc
Q 002164 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--I-LHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 401 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~-l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
+..++|+|||+.+++. . . .++++|. ++++.. . +.........++++|++..|+.+...+
T Consensus 227 p~~la~~~d~~~lyv~-------------~-~-~v~~~d~---~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~ 288 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWI-------------N-N-DIWRMPV---EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID 288 (328)
T ss_dssp CEEEEECTTSCEEEEE-------------S-S-SEEEEET---TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred ceeEEEecCCCEEEEE-------------c-c-EEEEEEC---CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence 5689999999988873 1 2 7889985 443331 1 111123345689999887877764110
Q ss_pred -ccceEEEEEcCCC
Q 002164 478 -TRRTRTWVISPGS 490 (958)
Q Consensus 478 -~~~~~l~~~~~~~ 490 (958)
.....|+++++++
T Consensus 289 y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 289 YQQQGIVYRYSPQG 302 (328)
T ss_dssp SSSEEEEEEECTTC
T ss_pred cccCCEEEEECCCC
Confidence 1125788888874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-06 Score=87.81 Aligned_cols=158 Identities=8% Similarity=-0.072 Sum_probs=78.1
Q ss_pred ccccccccCC---CCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeee
Q 002164 332 AVYTSLDPSP---DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (958)
Q Consensus 332 ~~~~~~~~Sp---DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s 407 (958)
..+...+||| ||+.|+-.+. ++.|.+||++++ ..+.+....... .....++||
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~-------------D~TIkIWDl~TGk~l~tL~g~~~~v----------~~v~~vafS 235 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTI-------------MNNIVIWNLKTGQLLKKMHIDDSYQ----------ASVCHKAYS 235 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEET-------------TSEEEEEETTTCCEEEEEECCC-------------CCCEEEEEE
T ss_pred CceeeEEeeccCCCCceEEEecC-------------CCcEEEEECCCCcEEEEEcCCCcce----------eeeEEEEEC
Confidence 3456678888 7788887774 349999999955 456654321100 234456899
Q ss_pred cCCCCceEEEEeccCCCc-ccccccCCeEEEEeCCCCCCCCceEEEe---ecccc-CceeeecCCceEEEEEeccccceE
Q 002164 408 SDKPSTLYWAETQDGGDA-KVEVTPRDIIYTQQAEPVQGEGPEILHK---LDLRY-GGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 408 pDG~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~~~l~~---~~~~~-~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
|||+.++..... .+.. ....+....+.+|+. .+++...... .++.. ..+..+.+|..++..+.+++
T Consensus 236 pdG~~lvs~s~~--~~~w~laSGs~D~tIklWd~---~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT---- 306 (356)
T 2w18_A 236 EMGLLFIVLSHP--CAKESESLRSPVFQLIVINP---KTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT---- 306 (356)
T ss_dssp ETTEEEEEEC--------------CCEEEEEEET---TTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC----
T ss_pred CCCCEEEEeccC--CCcceeeccCCCcEEEEEEC---CCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc----
Confidence 999987664221 0000 011233456777885 3333221110 11111 11111222444554433332
Q ss_pred EEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 483 TWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
|.++|+.++ +...........+.. .++|||||++|+...
T Consensus 307 IkIWDl~tG--k~l~tL~gH~~~vvs-----~vafSPDG~~LaSGS 345 (356)
T 2w18_A 307 IAIWDLLLG--QCTALLPPVSDQHWS-----FVKWSGTDSHLLAGQ 345 (356)
T ss_dssp EEEEETTTC--SEEEEECCC--CCCC-----EEEECSSSSEEEEEC
T ss_pred EEEEECCCC--cEEEEecCCCCCeEE-----EEEECCCCCEEEEEE
Confidence 455566664 333333322222221 167999999998776
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=99.72 Aligned_cols=170 Identities=11% Similarity=0.020 Sum_probs=94.0
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeE
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (958)
..+|.|+. .+..|+|.+............++.+.+..+. ...++.++||||||.++..+|.+ .|++++.
T Consensus 125 ~~~~~v~~---~d~~g~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~ 196 (329)
T 3tej_A 125 DPQWSIIG---IQSPRPNGPMQTAANLDEVCEAHLATLLEQQ-----PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAF 196 (329)
T ss_dssp CTTCEEEE---ECCCTTTSHHHHCSSHHHHHHHHHHHHHHHC-----SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccE
Confidence 46899999 4556776654333334455555544443321 12589999999999999999998 8999999
Q ss_pred EEEeccCCCCC----CCC-CCccccc--------------------chhhhc-HHHHHhc-C--cccccCCCCCCEEEEe
Q 002164 787 GIARSGAYNRT----LTP-FGFQNED--------------------RTLWEA-TSTYVEM-S--PFMSANKLKKPILLVH 837 (958)
Q Consensus 787 ~v~~~~~~~~~----~~~-~~~~~~~--------------------~~~~~~-~~~~~~~-s--p~~~~~~~~~P~Lii~ 837 (958)
++++.+..... ... ....... ...... ...+... . .......+.+|++++.
T Consensus 197 lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~ 276 (329)
T 3tej_A 197 LGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFV 276 (329)
T ss_dssp EEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEE
T ss_pred EEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEE
Confidence 99887653210 000 0000000 000000 0001000 0 0011335678999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc-CCCcccHHHHHHHHHHHH
Q 002164 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG-YAARESIMHVLWETDRWL 894 (958)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~-~~~~~~~~~~~~~i~~fl 894 (958)
|+.|..++ ......+ +..-..++++.+++ +|. +...+....+...+.+||
T Consensus 277 ~~~d~~~~--~~~~~~w----~~~~~~~~~~~v~g-~H~~~~~~~~~~~ia~~l~~~L 327 (329)
T 3tej_A 277 AERTLQEG--MSPERAW----SPWIAELDIYRQDC-AHVDIISPGTFEKIGPIIRATL 327 (329)
T ss_dssp EGGGCCTT--CCHHHHH----TTTEEEEEEEEESS-CGGGGGSTTTHHHHHHHHHHHH
T ss_pred eccCCCCC--CCchhhH----HHhcCCcEEEEecC-ChHHhCCChHHHHHHHHHHHHh
Confidence 99998776 4433333 22223588888985 786 333333344444555554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-05 Score=82.66 Aligned_cols=193 Identities=8% Similarity=-0.051 Sum_probs=113.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+++|||+ |+++. . ...|++++.+++....+....... ...++++|||+ |+++..
T Consensus 68 ~p~~i~~~~~g~-l~v~~-------~--~~~i~~~d~~~~~~~~~~~~~~~~----p~~i~~~~~g~-l~v~~~------ 126 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYVTD-------F--NNRVVTLAAGSNNQTVLPFDGLNY----PEGLAVDTQGA-VYVADR------ 126 (270)
T ss_dssp SCCCEEECTTCC-EEEEE-------T--TTEEEEECTTCSCCEECCCCSCSS----EEEEEECTTCC-EEEEEG------
T ss_pred CcceeEECCCCC-EEEEc-------C--CCEEEEEeCCCceEeeeecCCcCC----CcceEECCCCC-EEEEEC------
Confidence 567789999998 55532 1 458999998887655443222111 45788899997 444300
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~l 346 (958)
....|++++. +......... .....++++|||+ |
T Consensus 127 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 163 (270)
T 1rwi_B 127 ------------------------------------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V 163 (270)
T ss_dssp ------------------------------------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-E
T ss_pred ------------------------------------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-E
Confidence 2245777766 3333222221 3567789999998 5
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... .+.|++++.+++.......... ..+..+.+++|| .+++. +
T Consensus 164 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~d~~g-~l~v~-~-------- 209 (270)
T 1rwi_B 164 YVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAG-TVYVT-E-------- 209 (270)
T ss_dssp EEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTC-CEEEE-E--------
T ss_pred EEEECC------------CCEEEEEecCCCceEeecccCC------------CCceEEEECCCC-CEEEE-E--------
Confidence 555422 2378999988765443221110 234678999999 45442 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...+.|++++. ++.....+.... .....+++++||+ |+++...+ .+|.++++..
T Consensus 210 ---~~~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~---~~v~~~~~~~ 264 (270)
T 1rwi_B 210 ---HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN---DRVVKLTSLE 264 (270)
T ss_dssp ---TTTSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG---TEEEEECCCG
T ss_pred ---CCCCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCC-EEEEECCC---CEEEEEcCCC
Confidence 22456888884 554443332211 2356689999996 55554333 4678877665
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.8e-07 Score=100.67 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=67.5
Q ss_pred HHHHH-CCcEEEEcCCCCCCCCCCcccch--h----------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHH
Q 002164 706 LLWLA-RGFAILGGPTTPIIGEGDEEAND--R----------FVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAF 771 (958)
Q Consensus 706 ~~la~-~G~~vl~~~~~~~~G~G~~~~~~--~----------~~~~~~~D~~~av~~l~~~~-~~d~~~i~l~G~S~GG~ 771 (958)
..+|+ .|+.|+. .+.+|+|++.... . ...+.++|+...++++.... .....++.++||||||.
T Consensus 62 ~~lA~~~~~~Vi~---~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~ 138 (446)
T 3n2z_B 62 WDVAEELKAMLVF---AEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGM 138 (446)
T ss_dssp HHHHHHHTEEEEE---ECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHH
T ss_pred HHHHHHhCCcEEE---EecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHH
Confidence 34554 5889999 6777899884321 1 15678999999999998752 22335899999999999
Q ss_pred HHHHHHHhCCCceeEEEEeccCCC
Q 002164 772 MTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
+|++++.++|+++.++|+.+++..
T Consensus 139 lA~~~~~~yP~~v~g~i~ssapv~ 162 (446)
T 3n2z_B 139 LAAWFRMKYPHMVVGALAASAPIW 162 (446)
T ss_dssp HHHHHHHHCTTTCSEEEEETCCTT
T ss_pred HHHHHHHhhhccccEEEEeccchh
Confidence 999999999999999998775543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=96.49 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=73.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCC-CCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.|.||++||....... +.. ..| ......|+++||.|++ .+.+|+|.+...........+++.++++
T Consensus 8 ~~~vVlvHG~~~~~~~------~~~~~~w----~~l~~~L~~~G~~V~~---~d~~g~g~s~~~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 8 RYPIILVHGLTGTDKY------AGVLEYW----YGIQEDLQQRGATVYV---ANLSGFQSDDGPNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp SSCEEEECCTTCCSEE------TTTEESS----TTHHHHHHHTTCCEEE---CCCCSSCCSSSTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccc------cchHHHH----HHHHHHHHhCCCEEEE---EcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5778999996422110 000 111 2356788899999999 5556777664433334555555555544
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
.+ +.+++.++||||||.++..++.+.|++++++|.+++..
T Consensus 75 ~~------~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 75 AT------GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HH------CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh------CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 43 34689999999999999999999999999999998754
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=95.94 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=97.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.|+++||..... ..| ......|. . |.|+.++ ..|+|. ...|+.+.++.
T Consensus 17 ~~~l~~~hg~~~~~-----------~~~----~~~~~~l~-~-~~v~~~d---~~g~~~----------~~~~~~~~i~~ 66 (230)
T 1jmk_C 17 EQIIFAFPPVLGYG-----------LMY----QNLSSRLP-S-YKLCAFD---FIEEED----------RLDRYADLIQK 66 (230)
T ss_dssp SEEEEEECCTTCCG-----------GGG----HHHHHHCT-T-EEEEEEC---CCCSTT----------HHHHHHHHHHH
T ss_pred CCCEEEECCCCCch-----------HHH----HHHHHhcC-C-CeEEEec---CCCHHH----------HHHHHHHHHHH
Confidence 47788999953111 011 12233343 4 9999844 445543 12344444443
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEeccCCCCCCCCCC---ccc----------ccchhh--
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIARSGAYNRTLTPFG---FQN----------EDRTLW-- 811 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~~~~~~~~~~~~---~~~----------~~~~~~-- 811 (958)
+ . ...++.++|||+||.++..++.+. ++.++++|.+++........+. ... ......
T Consensus 67 ~---~--~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (230)
T 1jmk_C 67 L---Q--PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSE 141 (230)
T ss_dssp H---C--CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSH
T ss_pred h---C--CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhH
Confidence 3 1 125799999999999999998864 3578888887754321100000 000 000000
Q ss_pred ---hcH----HHHHhcCc-ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCc--cCCCcc
Q 002164 812 ---EAT----STYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH--GYAARE 881 (958)
Q Consensus 812 ---~~~----~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H--~~~~~~ 881 (958)
... ..+..+.. .....++++|+++++|++|..++ . ....+.+ .....++++.+|+ +| .+ ..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~-~~~~w~~---~~~~~~~~~~i~g-~H~~~~-~~~ 213 (230)
T 1jmk_C 142 AVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--E-WLASWEE---ATTGAYRMKRGFG-THAEML-QGE 213 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--T-TEECSGG---GBSSCEEEEECSS-CGGGTT-SHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCc--c-ccchHHH---hcCCCeEEEEecC-ChHHHc-CcH
Confidence 000 00111100 12346788999999999999875 2 2222211 1223589999998 99 55 344
Q ss_pred cHHHHHHHHHHHHH
Q 002164 882 SIMHVLWETDRWLQ 895 (958)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (958)
+...+...+.+||.
T Consensus 214 ~~~~~~~~i~~~l~ 227 (230)
T 1jmk_C 214 TLDRNAGILLEFLN 227 (230)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 44455555555553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-05 Score=85.71 Aligned_cols=246 Identities=14% Similarity=0.108 Sum_probs=127.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecC-CeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN-STLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD-G~~l~~~~~~~~~~ 268 (958)
....++|++||+ |+++.... ...+.....|++++..+++.+.+...........+..+++++| |++++..
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~-~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~------- 89 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD------- 89 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------
T ss_pred CccCceECCCCC-EEEEEecc-ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-------
Confidence 356789999995 55541000 0001124579999988888766543100000011557889999 7644433
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeec-CCC------ccccccccCC
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI-GPP------AVYTSLDPSP 341 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l-~~~------~~~~~~~~Sp 341 (958)
....|++++.+|+.+.+ ... ..+..++++|
T Consensus 90 -------------------------------------------~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~ 126 (314)
T 1pjx_A 90 -------------------------------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY 126 (314)
T ss_dssp -------------------------------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred -------------------------------------------CCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC
Confidence 11247788876655555 221 2356788999
Q ss_pred CCcEEEEEeecCCc---cccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee----cCCCCce
Q 002164 342 DEKYILISSIHRPY---SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR----SDKPSTL 414 (958)
Q Consensus 342 DGk~l~~~~~~~~~---~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s----pDG~~l~ 414 (958)
||+.+ ++...... ..........+.++.++.+ +..+.+.... .....+.|+ |||+.++
T Consensus 127 ~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 127 EGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------------QFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------------SSEEEEEEEECTTSCEEEEE
T ss_pred CCCEE-EEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------------CCcceEEEecccCCCCCEEE
Confidence 99754 44322100 0000000112467778776 3333332100 123578899 9998766
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCce---EEEeec----cccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHKLD----LRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+. + ...+.|++++. ...++.. .+.... .....+++++||+ |+++...+ ..|++++
T Consensus 192 v~-~-----------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~---~~i~~~d 253 (314)
T 1pjx_A 192 VA-E-----------TPTKKLWSYDI--KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS---SHIEVFG 253 (314)
T ss_dssp EE-E-----------TTTTEEEEEEE--EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT---TEEEEEC
T ss_pred EE-E-----------CCCCeEEEEEC--CCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCC---CEEEEEc
Confidence 63 1 22457888874 1122211 111111 3345688999996 44443222 3688999
Q ss_pred CCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
++++ +.............+ +.++|||++|+...
T Consensus 254 ~~~g--~~~~~~~~~~~~~~~------i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 254 PDGG--QPKMRIRCPFEKPSN------LHFKPQTKTIFVTE 286 (314)
T ss_dssp TTCB--SCSEEEECSSSCEEE------EEECTTSSEEEEEE
T ss_pred CCCC--cEeEEEeCCCCCcee------EEECCCCCEEEEEe
Confidence 8753 222222222122222 67899998776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=93.52 Aligned_cols=282 Identities=9% Similarity=-0.085 Sum_probs=131.4
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeecccc-CCCCCceEEEEEcCCCceeeccCCCC-cc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED-SSSSKLRVWVADVDTGKARPLFQSPD-IY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~-~~~~~~~l~~~~~~~g~~~~lt~~~~-~~ 241 (958)
.+.++|..+ + ....++ +.+... .+.+||||++|+.+....... .+.....|.++|+.+++...-...+. .+
T Consensus 47 ~vsvID~~t-~--~v~~~i---~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGC-G--VTLGHS---LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT-T--EEEEEE---EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCC-C--eEEEEE---eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 577877643 1 122233 223333 799999999998876321110 11235679999999988754433220 00
Q ss_pred c--cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCce--eeecCCcccccchhhh-hccCchhh-hHHHHhhcce
Q 002164 242 L--NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKM--QSNEKRDIIQVRTFQD-LLKDEYDE-DLFDYYATTQ 315 (958)
Q Consensus 242 ~--~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~~d-~~~~~~~~-~~~~~~~~~~ 315 (958)
+ ......+++||||++++++....... ..+ .+... +..+.. .. ....+.+. .++.....+.
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~----------v~V~~iD~~t--v~~i~v-~~~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAA----------AGLSVPGASD--DQLTKS-ASCFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCE----------EEEEETTTEE--EEEEEC-SSCCCCEEEETTEEECCCCTTS
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCe----------EEEEEEchhh--ceEEEC-CCceEEccCCCeEEEEEcCCCC
Confidence 0 00134889999999999872110000 000 00000 000000 00 00000000 0000012233
Q ss_pred EEEEEc-C-----Ceeee----cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC
Q 002164 316 LVLVSL-D-----GTVKE----IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (958)
Q Consensus 316 l~~~~~-~-----g~~~~----l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~ 385 (958)
+..+++ + |+... ...-+ ..+..++|++.++|.+. +.++++|+.++..+.+...+
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg--~~P~~~~~~~~~~~vs~--------------~~V~viD~~~~~~~v~~~~~ 250 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCS--SQAAQANYPGMLVWAVA--------------SSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBC--SCCEEETTTTEEEECBS--------------SCCEEEECCSSCCEEECCCC
T ss_pred EEEEECccccccCCeEEEEeeeeeeCC--CCccccccCCEEEEEcC--------------CEEEEEECCCCcceEEEEEE
Confidence 444554 3 22110 00000 01112667777777663 37888888754433332222
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeee
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWC 464 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~s 464 (958)
..............+...+.++|||+++++......+ ... ...+.+.++|+ ...+ ...+.-+ .....+.|+
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~-~~~---~~~~~~~ViD~---~t~~vv~~i~vg-~~p~gi~~s 322 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR-SCL---AAAENTSSVTA---SVGQTSGPISNG-HDSDAIIAA 322 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS-CTT---SCEEEEEEEES---SSCCEEECCEEE-EEECEEEEC
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccC-ccc---ccCCCEEEEEC---CCCeEEEEEECC-CCcceEEEC
Confidence 1100000000001223347899999998874321000 000 00123558885 3333 3333322 246779999
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCC
Q 002164 465 DDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
|||++++++.+... ..|.++|+.+.
T Consensus 323 ~Dg~~l~va~~~~~--~~VsVID~~t~ 347 (368)
T 1mda_H 323 QDGASDNYANSAGT--EVLDIYDAASD 347 (368)
T ss_dssp CSSSCEEEEEETTT--TEEEEEESSSC
T ss_pred CCCCEEEEEccCCC--CeEEEEECCCC
Confidence 99999999876222 36999998885
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-05 Score=86.03 Aligned_cols=200 Identities=11% Similarity=0.003 Sum_probs=121.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++|+|||+ |+++. .....|++++++++....+...... .. ++|+|+|+.|+++..
T Consensus 132 ~P~~la~d~~g~-lyv~d--------~~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~------ 190 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQ--------RDDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGW------ 190 (409)
T ss_dssp CEEEEEECSTTE-EEEEE--------TTTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBS------
T ss_pred CceEEEEeCCCC-EEEEe--------cCCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEec------
Confidence 456678999997 55542 1356899999998887766543322 33 899999998887610
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeec----C-CCccccccccCCC
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEI----G-PPAVYTSLDPSPD 342 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l----~-~~~~~~~~~~SpD 342 (958)
. ....|++++. ++. .+.+ . .......++++|+
T Consensus 191 ---------------~--------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~ 229 (409)
T 3hrp_A 191 ---------------E--------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET 229 (409)
T ss_dssp ---------------S--------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred ---------------C--------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence 0 1125888887 443 2333 2 2255678899997
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcc-eeeeecCCCCceEEEEecc
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR-SINWRSDKPSTLYWAETQD 421 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~ 421 (958)
+.+|++.. . .+.|+.++.+++....+........ ....+. .++|+|++..|++. +
T Consensus 230 ~g~lyv~d-~------------~~~I~~~d~~~~~~~~~~~~~~~g~-------~~~~P~~~ia~~p~~g~lyv~-d--- 285 (409)
T 3hrp_A 230 EEWLYFVD-S------------NKNFGRFNVKTQEVTLIKQLELSGS-------LGTNPGPYLIYYFVDSNFYMS-D--- 285 (409)
T ss_dssp SSEEEEEC-T------------TCEEEEEETTTCCEEEEEECCCCSC-------CCCSSCCEEEEETTTTEEEEE-E---
T ss_pred CCeEEEEE-C------------CCcEEEEECCCCCEEEEecccccCC-------CCCCccccEEEeCCCCEEEEE-e---
Confidence 77777743 2 2479999998766544422111000 001223 89999987777663 1
Q ss_pred CCCcccccccCCeEEEEeCCCCCCCCceEEEeec---------------cccCceeeecCCceEEEEEec-cccceEEEE
Q 002164 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---------------LRYGGISWCDDSLALVYESWY-KTRRTRTWV 485 (958)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---------------~~~~~~~~spDg~~l~~~~~~-~~~~~~l~~ 485 (958)
...+.|++++. ++. ...+.... .....+++++||+ |+++ +. .+ .+|++
T Consensus 286 --------~~~~~I~~~~~---~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyva-d~~~~--~~I~~ 349 (409)
T 3hrp_A 286 --------QNLSSVYKITP---DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIV-DGFKG--YCLRK 349 (409)
T ss_dssp --------TTTTEEEEECT---TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEE-ETTTT--CEEEE
T ss_pred --------CCCCEEEEEec---CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEE-eCCCC--CEEEE
Confidence 23557888874 443 33332211 1134589999998 5555 33 33 57999
Q ss_pred EcCCCC
Q 002164 486 ISPGSK 491 (958)
Q Consensus 486 ~~~~~~ 491 (958)
+++.++
T Consensus 350 ~~~~~G 355 (409)
T 3hrp_A 350 LDILDG 355 (409)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 986553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-05 Score=84.63 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=121.2
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
..|+++++ ++....+... .....++|+++++.|+++... .+.|+.++++++..+.+.....
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~----- 158 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL----- 158 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSSC-----
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCCC-----
Confidence 45888888 5555555544 567788999988889888633 3489999999876655433211
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceE
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLAL 470 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l 470 (958)
..+..+++++.+..|++. + ...+.|++++. +|...+.+.... .....+++.|++..|
T Consensus 159 -------~~p~glavd~~~g~lY~~-d-----------~~~~~I~~~~~---dg~~~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 159 -------ESPGGLAVDWVHDKLYWT-D-----------SGTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp -------SCCCCEEEETTTTEEEEE-E-----------TTTTEEEECBT---TSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred -------CCccEEEEEeCCCeEEEE-c-----------CCCCeEEEEeC---CCCceEEeecCCCCCCcEEEEEcCCCeE
Confidence 234578888888777663 2 23457888874 666655554332 334568899999999
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (958)
+++.+... .+|+++++++. ....+.........+ ++++|+++.|++... .
T Consensus 217 y~td~~~~--~~I~r~~~dG~--~~~~~~~~~~~~PnG------lavd~~~~~lY~aD~--------------------~ 266 (386)
T 3v65_B 217 YWTDWGNT--PRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA--------------------K 266 (386)
T ss_dssp EEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEEGGGTEEEEEET--------------------T
T ss_pred EEeccCCC--CEEEEEeCCCC--CcEEEEECCCCCeee------EEEeCCCCEEEEEEC--------------------C
Confidence 88865442 57999999884 333333222111112 778988888888752 1
Q ss_pred CCeEEEEECCCCceEEEec
Q 002164 551 IPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~ 569 (958)
...|+++|+++...+.+..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp TTEEEEECTTSCSCEEEEC
T ss_pred CCEEEEEeCCCCeeEEEEE
Confidence 2369999988765555543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-05 Score=82.21 Aligned_cols=195 Identities=10% Similarity=-0.025 Sum_probs=108.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++++|||+ |+++.+ .....|++++..++....+....... ...+++++||+ |+++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~----p~~i~~~~~g~-l~v~~------- 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE-------GMYGRVVKLATGSTGTTVLPFNGLYQ----PQGLAVDGAGT-VYVTD------- 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC-------SSSCEEEEECC-----EECCCCSCCS----CCCEEECTTCC-EEEEE-------
T ss_pred CccceEECCCCC-EEEEcc-------CCCCcEEEecCCCcccceEeeCCcCC----cceeEECCCCC-EEEEc-------
Confidence 356678999997 544131 23568999987776554432222111 45788999998 44441
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk~l 346 (958)
....|++++. ++....+... .....++++|||+ |
T Consensus 85 ------------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 121 (270)
T 1rwi_B 85 ------------------------------------------FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-V 121 (270)
T ss_dssp ------------------------------------------TTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-E
T ss_pred ------------------------------------------CCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-E
Confidence 1134788887 4444433322 4566788999997 5
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... .+.|++++..+.......... ...+..+.+++||+ +++. +
T Consensus 122 ~v~~~~------------~~~i~~~~~~~~~~~~~~~~~------------~~~p~~i~~~~~g~-l~v~-~-------- 167 (270)
T 1rwi_B 122 YVADRG------------NNRVVKLAAGSKTQTVLPFTG------------LNDPDGVAVDNSGN-VYVT-D-------- 167 (270)
T ss_dssp EEEEGG------------GTEEEEECTTCCSCEECCCCS------------CCSCCCEEECTTCC-EEEE-E--------
T ss_pred EEEECC------------CCEEEEEECCCceeEeecccc------------CCCceeEEEeCCCC-EEEE-E--------
Confidence 544322 236778865433222111100 02346789999997 4442 2
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.|++++. ++.......... .....++++++| .|+++...+ ..|++++.++.
T Consensus 168 ---~~~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~---~~v~~~~~~~~ 223 (270)
T 1rwi_B 168 ---TDNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT---NQVVKLLAGST 223 (270)
T ss_dssp ---GGGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT---SCEEEECTTCS
T ss_pred ---CCCCEEEEEec---CCCceEeecccCCCCceEEEECCCC-CEEEEECCC---CcEEEEcCCCC
Confidence 22457888884 444433222111 334568899999 555554332 35888988764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.7e-06 Score=88.13 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=66.0
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-CceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
...++++||+..|+++... .+.|.+|+.+ ++..+.+...... ..+..+.|+| .
T Consensus 198 p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~~~~~~-----------~~~~~~~~~p---g 251 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIKHASFG-----------RNVFAISYIP---G 251 (329)
T ss_dssp EEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEECCTTTT-----------TCEEEEEEET---T
T ss_pred CcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEeccccC-----------CCcceeeecC---C
Confidence 5678999997777777533 3489999998 5555554322111 2345677888 2
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
+++..+ +... +.......+++++. .+|+....+. ........++++||| .|+.+.. .. .+|++++++
T Consensus 252 ~~~~~~---g~~~-v~~~~~~~v~~~~~--~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~-~~--~~I~~~~~~ 321 (329)
T 3fvz_A 252 FLFAVN---GKPY-FGDQEPVQGFVMNF--SSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDA-HT--NTVWKFTLT 321 (329)
T ss_dssp EEEEEE---CCCC-TTCSCCCCEEEEET--TTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEES-SS--CCEEEEEEE
T ss_pred EEEEeC---CCEE-eccCCCcEEEEEEc--CCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEEC-CC--CEEEEEeCC
Confidence 333322 1111 11123456888885 2333333321 112234568999999 5555433 32 346666654
Q ss_pred C
Q 002164 490 S 490 (958)
Q Consensus 490 ~ 490 (958)
+
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.4e-07 Score=92.89 Aligned_cols=82 Identities=12% Similarity=-0.066 Sum_probs=61.2
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--- 780 (958)
....|+++||.|+.++ ..|+|.+. .....+++.+.++++.+.- ..+++.|+||||||.++.+++.+.
T Consensus 86 l~~~L~~~Gy~V~a~D---lpG~G~~~-----~~~~~~~la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~ 155 (316)
T 3icv_A 86 WIPLSAQLGYTPCWIS---PPPFMLND-----TQVNTEYMVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSI 155 (316)
T ss_dssp HHHHHHHTTCEEEEEC---CTTTTCSC-----HHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHCCCeEEEec---CCCCCCCc-----HHHHHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhcccc
Confidence 4567888999999944 45666432 2334566777788777653 236899999999999998877764
Q ss_pred CCceeEEEEeccCCC
Q 002164 781 PHLFCCGIARSGAYN 795 (958)
Q Consensus 781 p~~~~a~v~~~~~~~ 795 (958)
+++++.+|++++.+.
T Consensus 156 ~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 156 RSKVDRLMAFAPDYK 170 (316)
T ss_dssp TTTEEEEEEESCCTT
T ss_pred chhhceEEEECCCCC
Confidence 589999999998765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-05 Score=86.01 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=119.1
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|+++++++++...+...... ...++|.+++..|+++- .
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~-----~~gl~~d~~~~~ly~~D---------------------~------------- 135 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSD---------------------V------------- 135 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSC-----EEEEEEETTTTEEEEEE---------------------T-------------
T ss_pred CccceeeccCCCcEEEEecCCCc-----cEEEEEecCCCeEEEEe---------------------C-------------
Confidence 45799999988776666543332 55899998777788761 0
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCeeeec-CCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
....|+++++ ++..+.+ ... .....+++++.++.|+++... ...|++++++
T Consensus 136 --------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~------------~~~I~~~~~d 189 (386)
T 3v65_B 136 --------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 189 (386)
T ss_dssp --------------TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT------------TTEEEECBTT
T ss_pred --------------CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC------------CCeEEEEeCC
Confidence 2346889998 4444443 333 445677888888888888633 2378888888
Q ss_pred CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee
Q 002164 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL 454 (958)
Q Consensus 375 ~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~ 454 (958)
++..+.+..... ..+..++++|++..|++. +. .....|++++. +|...+.+...
T Consensus 190 g~~~~~l~~~~l------------~~P~giavdp~~g~ly~t-d~----------~~~~~I~r~~~---dG~~~~~~~~~ 243 (386)
T 3v65_B 190 GAHRKVLLWQSL------------EKPRAIALHPMEGTIYWT-DW----------GNTPRIEASSM---DGSGRRIIADT 243 (386)
T ss_dssp SCSCEEEECSSC------------SCEEEEEEETTTTEEEEE-EC----------SSSCEEEEEET---TSCSCEEEECS
T ss_pred CCceEEeecCCC------------CCCcEEEEEcCCCeEEEe-cc----------CCCCEEEEEeC---CCCCcEEEEEC
Confidence 766555433111 234678999988776653 22 12357999985 77666666433
Q ss_pred cc-ccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 455 DL-RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 455 ~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.. ...+++|+|+++.|+++.... .+|+++++++.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~---~~I~~~d~dG~ 278 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 278 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTT---TEEEEECTTSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 22 345799999999998885333 57999999874
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-07 Score=102.44 Aligned_cols=108 Identities=11% Similarity=-0.127 Sum_probs=77.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (958)
.|+||++||++.. ....+.......|++ .||.|++ .|.+|+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~l~~~l~~~~~~~Vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~l 133 (452)
T 1bu8_A 70 RKTRFIVHGFIDK-------------GEDGWLLDMCKKMFQVEKVNCIC---VDWRRGSRTEYTQASYNTRVVGAEIAFL 133 (452)
T ss_dssp SEEEEEECCSCCT-------------TCTTHHHHHHHHHHTTCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-------------CCchHHHHHHHHHHhhCCCEEEE---EechhcccCchhHhHhhHHHHHHHHHHH
Confidence 6899999996421 101111113445665 4999999 556677766422 11224557788899
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.+++.|+|||+||.+|+.++.+.|+++++++..+|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1bu8_A 134 VQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCC
Confidence 99987654456789999999999999999999999999999998775
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-05 Score=83.27 Aligned_cols=235 Identities=6% Similarity=-0.020 Sum_probs=122.6
Q ss_pred ceEEEEEc-CCeeeecCC-C--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc--eEEEeccCCcc
Q 002164 314 TQLVLVSL-DGTVKEIGP-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLA 387 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~-~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--~~~~l~~~~~~ 387 (958)
..|++++. +|+...... . .....++++|||+ |+++... .+.|++|+.+++ ....+......
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~------------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVA------------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETT------------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECC------------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 56999998 786554332 2 3566789999999 5555422 348999998876 33433221000
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec----------cc
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------LR 457 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------~~ 457 (958)
. ........+..++++|++..|++. +. .....|++++. +|.....+.... ..
T Consensus 136 g----~~~~~~~~P~~ia~~~~~g~lyv~-d~----------~~~~~I~~~~~---~g~~~~~~~~~g~~~~~~~~~~~~ 197 (329)
T 3fvz_A 136 G----SDQNHFCQPTDVAVEPSTGAVFVS-DG----------YCNSRIVQFSP---SGKFVTQWGEESSGSSPRPGQFSV 197 (329)
T ss_dssp C----CSTTCCSSEEEEEECTTTCCEEEE-EC----------SSCCEEEEECT---TSCEEEEECEECCSSSCCTTEESC
T ss_pred C----CCccccCCCcEEEEeCCCCeEEEE-eC----------CCCCeEEEEcC---CCCEEEEeccCCCCCCCCCcccCC
Confidence 0 000111245689999954455552 10 13557888874 554444442111 11
Q ss_pred cCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecc--CCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
...++++|++..|+++...+ .+|.+++++++ +....... .....+. +.++| |. ++....
T Consensus 198 p~gia~d~~~g~l~v~d~~~---~~I~~~~~~~G--~~~~~~~~~~~~~~~~~------~~~~p-g~--~~~~~g----- 258 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADREN---GRIQCFKTDTK--EFVREIKHASFGRNVFA------ISYIP-GF--LFAVNG----- 258 (329)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTTC--CEEEEECCTTTTTCEEE------EEEET-TE--EEEEEC-----
T ss_pred CcEEEEECCCCEEEEEECCC---CEEEEEECCCC--cEEEEEeccccCCCcce------eeecC-CE--EEEeCC-----
Confidence 45689999966776664333 46888888743 22222211 1111121 56777 42 222211
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d 615 (958)
.+++. ......+++||+.+|+....+..... -...+. ..++++|| .+++..... ..|++++
T Consensus 259 -~~~v~------~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~-------~ia~~~dG-~lyvad~~~---~~I~~~~ 319 (329)
T 3fvz_A 259 -KPYFG------DQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPH-------DIVASEDG-TVYIGDAHT---NTVWKFT 319 (329)
T ss_dssp -CCCTT------CSCCCCEEEEETTTCCEEEEECCSSS-CCSSEE-------EEEECTTS-EEEEEESSS---CCEEEEE
T ss_pred -CEEec------cCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCee-------EEEECCCC-CEEEEECCC---CEEEEEe
Confidence 01111 11234699999988887766542211 011111 24678888 454443322 2466666
Q ss_pred CC
Q 002164 616 WP 617 (958)
Q Consensus 616 ~~ 617 (958)
+.
T Consensus 320 ~~ 321 (329)
T 3fvz_A 320 LT 321 (329)
T ss_dssp EE
T ss_pred CC
Confidence 43
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-05 Score=80.50 Aligned_cols=193 Identities=13% Similarity=0.105 Sum_probs=107.4
Q ss_pred cccceee-cCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
.....++ .++| .|+++.. .....|++++.++...+.+....... ...++++|||++++...
T Consensus 78 ~p~~i~~~~~~g-~l~v~~~-------~~~~~i~~~d~~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~------ 139 (286)
T 1q7f_A 78 YPNRVAVVRNSG-DIIVTER-------SPTHQIQIYNQYGQFVRKFGATILQH----PRGVTVDNKGRIIVVEC------ 139 (286)
T ss_dssp SEEEEEEETTTT-EEEEEEC-------GGGCEEEEECTTSCEEEEECTTTCSC----EEEEEECTTSCEEEEET------
T ss_pred CceEEEEEcCCC-eEEEEcC-------CCCCEEEEECCCCcEEEEecCccCCC----ceEEEEeCCCCEEEEEC------
Confidence 3456677 4566 4555431 12457899996554444332211111 45788999997444220
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCC--C-ccccccccCCCCc
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGP--P-AVYTSLDPSPDEK 344 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~--~-~~~~~~~~SpDGk 344 (958)
....|++++.+|+ ...+.. . .....++++|||+
T Consensus 140 -------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 140 -------------------------------------------KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp -------------------------------------------TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred -------------------------------------------CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC
Confidence 1235777777443 333321 2 4467889999998
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+++... .+.|++|+.+++....+.... . ...+..+++++||+ +++. +
T Consensus 177 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~g-~----------~~~p~~i~~d~~G~-l~v~-~------ 224 (286)
T 1q7f_A 177 -IFISDNR------------AHCVKVFNYEGQYLRQIGGEG-I----------TNYPIGVGINSNGE-ILIA-D------ 224 (286)
T ss_dssp -EEEEEGG------------GTEEEEEETTCCEEEEESCTT-T----------SCSEEEEEECTTCC-EEEE-E------
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEEccCC-c----------cCCCcEEEECCCCC-EEEE-e------
Confidence 4444322 238999998877655543211 0 02346789999995 3332 1
Q ss_pred cccccccCC-eEEEEeCCCCCCCCceEEEeecc--ccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 425 AKVEVTPRD-IIYTQQAEPVQGEGPEILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 425 ~~~~~~~~~-~l~~~~~~~~~g~~~~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
...+ .|.+++. ++.....+..... ....++++|||+ |+++ +.+ +...+|.+
T Consensus 225 -----~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~-~~v~v~~~ 278 (286)
T 1q7f_A 225 -----NHNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDGS-VVLA-SKD-YRLYIYRY 278 (286)
T ss_dssp -----CSSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETT-TEEEEEEC
T ss_pred -----CCCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCC-CeEEEEEc
Confidence 2233 7888884 5554555533222 234689999996 5544 333 22445543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00011 Score=78.66 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=115.6
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC----ceEEEeccCCcc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPLA 387 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~----~~~~~l~~~~~~ 387 (958)
..|.++++ +++...+... .....++|+++++.|+++... .+.|+.+++++ +..+.+....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~------------~~~I~~~~~~g~~~~~~~~~~~~~~-- 75 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD-- 75 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS--
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC------------CCcEEEEECCCCCCCcccEEEEeCC--
Confidence 45889999 5555444433 566788999999999888633 34888898886 3323322110
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spD 466 (958)
...+..+++++.+..|++. + ...+.|.+++. +|...+.+... ......++..|+
T Consensus 76 ----------~~~p~glavd~~~~~ly~~-d-----------~~~~~I~~~~~---~g~~~~~~~~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 76 ----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDPV 130 (316)
T ss_dssp ----------CSCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSSSEEEEEECTTCCEEEEEEETT
T ss_pred ----------CCCcCEEEEeecCCeEEEE-E-----------CCCCEEEEEeC---CCCceEEEEECCCCCcceEEeCCC
Confidence 0234678888877776663 2 23457888885 66665555432 234456889998
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+..|+++.+.. ..+|+++++++. ....+.........+ ++++++++.|++...
T Consensus 131 ~g~ly~~d~~~--~~~I~~~~~dG~--~~~~~~~~~~~~P~g------la~d~~~~~lY~~D~----------------- 183 (316)
T 1ijq_A 131 HGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 183 (316)
T ss_dssp TTEEEEEECSS--SCEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCEEEEEccCC--CCeEEEEcCCCC--CeEEEEECCCCCceE------EEEeccCCEEEEEEC-----------------
Confidence 88888876432 257999999874 222332221111111 778999888888752
Q ss_pred CCCCCCeEEEEECCCCceEEEec
Q 002164 547 PEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
....|+++|+++...+.+..
T Consensus 184 ---~~~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 184 ---KLHSISSIDVNGGNRKTILE 203 (316)
T ss_dssp ---TTTEEEEEETTSCSCEEEEE
T ss_pred ---CCCeEEEEecCCCceEEEee
Confidence 12369999998766555543
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.5e-07 Score=101.17 Aligned_cols=108 Identities=11% Similarity=-0.039 Sum_probs=76.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC-CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (958)
.|+||++||.... ....+.......|+++ ||.|++ .|.+|+|.+.... .......+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~G~S~~~~~~~~~~~~~~dl~~~ 133 (452)
T 1w52_X 70 RKTHFVIHGFRDR-------------GEDSWPSDMCKKILQVETTNCIS---VDWSSGAKAEYTQAVQNIRIVGAETAYL 133 (452)
T ss_dssp SCEEEEECCTTCC-------------SSSSHHHHHHHHHHTTSCCEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-------------CCchHHHHHHHHHHhhCCCEEEE---EecccccccccHHHHHhHHHHHHHHHHH
Confidence 5889999996421 1011112234456654 999999 5556777664221 1224456788888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.+++.|+|||+||.+|+.++.+.|+++++++..+|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1w52_X 134 IQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEecccc
Confidence 99887653345689999999999999999999999999999998775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-05 Score=87.63 Aligned_cols=211 Identities=11% Similarity=0.051 Sum_probs=112.5
Q ss_pred cccceeecC-----CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE-e-cCCeEEEEEe
Q 002164 190 KLNFVTWSQ-----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW-V-NNSTLLVCTI 262 (958)
Q Consensus 190 ~~~~~~wSP-----DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w-s-pDG~~l~~~~ 262 (958)
...+|..|. ||++|+. .+ ..+..|.++|+++.+..+++..+... ....+++ + ||++++++..
T Consensus 86 d~hh~~~s~t~g~~DG~~lfV-nd-------~~~~rVavIdl~t~~~~~ii~ip~g~---~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFM-ND-------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEE-EE-------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred CCCccccCCCCCCcCCCEEEE-Ec-------CCCCEEEEEECCCceEeeEEeCCCCC---CCcceeeeecCCCcEEEEec
Confidence 345588887 9987766 32 34778999999999877755544321 1456676 5 9999998762
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccC
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPS 340 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~S 340 (958)
.. ... ..++++.+.. .++ ....+..+|. +.+ ..++.-++.....+.|
T Consensus 155 ~~-~~p-------------~~~dg~~l~~--------~~~---------~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 ED-ETP-------------LVNDGTNMED--------VAN---------YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CS-CEE-------------SSCSSSSTTC--------GGG---------EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred cc-ccc-------------cCCCCccccc--------ccc---------cCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 10 000 0011111000 011 2345777887 553 2333322345677899
Q ss_pred CCCcEEEEEeecCCcccccc--CCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEE
Q 002164 341 PDEKYILISSIHRPYSFIVP--CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~--~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~ 418 (958)
|||+++++++.......... .......+.+.+.. +...+.+||+...+
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~---------------------------~~~~~v~~Gk~~~i--- 253 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA---------------------------EIEKAIAAGDYQEL--- 253 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH---------------------------HHHHHHHHTCSEEE---
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeecc---------------------------ceeEeccCCCeeEE---
Confidence 99999999884432100000 00000112222211 12235667775433
Q ss_pred eccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+.+-++|.....+.. ...+... .....+.+||||++++.+.... ..+.++|.++
T Consensus 254 --------------~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s---~~VsVid~~~ 308 (595)
T 1fwx_A 254 --------------NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLS---PTVTVLDVTR 308 (595)
T ss_dssp --------------TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTS---SBEEEEEGGG
T ss_pred --------------CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCC---CeEEEEECcc
Confidence 237788851101223 2344332 3455789999999987764333 3577777664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-05 Score=82.16 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=118.2
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|+++++++.....+...... ...++|.+.+..|+++- .
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~-----~~~l~~d~~~~~ly~~D---------------------~------------- 92 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSD---------------------V------------- 92 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSC-----EEEEEEETTTTEEEEEE---------------------T-------------
T ss_pred ccceEEEeCCCCeeEEeecCCCc-----eEEEEEeccccEEEEEe---------------------c-------------
Confidence 44689999988776665433322 45789998877888761 0
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCeeeec-CCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~ 374 (958)
....|+++++ ++..+.+ ... .....+++.+.++.|+++... .+.|++.+++
T Consensus 93 --------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~d 146 (349)
T 3v64_C 93 --------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 146 (349)
T ss_dssp --------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETT
T ss_pred --------------cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------------CCeEEEEcCC
Confidence 2346889998 4444443 222 445677888888888888633 2489999998
Q ss_pred CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee
Q 002164 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL 454 (958)
Q Consensus 375 ~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~ 454 (958)
|+..+.+..... ..+..++++|++..|++. +. .....|++++. +|...+.+...
T Consensus 147 G~~~~~l~~~~l------------~~P~~iavdp~~g~ly~t-d~----------~~~~~I~r~~~---dG~~~~~~~~~ 200 (349)
T 3v64_C 147 GAHRKVLLWQSL------------EKPRAIALHPMEGTIYWT-DW----------GNTPRIEASSM---DGSGRRIIADT 200 (349)
T ss_dssp SCSCEEEECTTC------------SCEEEEEEETTTTEEEEE-EC----------SSSCEEEEEET---TSCSCEESCCS
T ss_pred CCceEEEEeCCC------------CCcceEEEecCcCeEEEe-cc----------CCCCEEEEEeC---CCCCcEEEEEC
Confidence 876555432111 234678999988776653 32 12367999985 67665555332
Q ss_pred -ccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 455 -DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 455 -~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
-....+++++|+++.|+++.... .+|+++++++.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~---~~I~~~~~dG~ 235 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGS 235 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCC---CEEEEEeCCCC
Confidence 22345789999999998885433 57999998874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00011 Score=80.00 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=119.9
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p 391 (958)
..|+++++ +.....+... .....++|+++++.|+++... .+.|+.++++++..+.+.....
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~----- 115 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL----- 115 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC-----
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------------CCceEEEecCCCCceEEEeCCC-----
Confidence 45888888 4455555444 556788999988889888633 3489999998776555432111
Q ss_pred ccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceE
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLAL 470 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l 470 (958)
..+.++++.+.+..|++. + ...+.|++++. +|...+.+.... .....+++.|++..|
T Consensus 116 -------~~p~glavd~~~g~ly~~-d-----------~~~~~I~~~~~---dG~~~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 116 -------ESPGGLAVDWVHDKLYWT-D-----------SGTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp -------SCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred -------CCccEEEEecCCCeEEEE-c-----------CCCCeEEEEcC---CCCceEEEEeCCCCCcceEEEecCcCeE
Confidence 234578888888777663 2 23457888885 666655554322 234568999998899
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCC
Q 002164 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGN 550 (958)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (958)
+++.+... .+|+++++++. ....+.........+ ++++|+++.|++... .
T Consensus 174 y~td~~~~--~~I~r~~~dG~--~~~~~~~~~~~~PnG------la~d~~~~~lY~aD~--------------------~ 223 (349)
T 3v64_C 174 YWTDWGNT--PRIEASSMDGS--GRRIIADTHLFWPNG------LTIDYAGRRMYWVDA--------------------K 223 (349)
T ss_dssp EEEECSSS--CEEEEEETTSC--SCEESCCSSCSCEEE------EEEETTTTEEEEEET--------------------T
T ss_pred EEeccCCC--CEEEEEeCCCC--CcEEEEECCCCCcce------EEEeCCCCEEEEEEC--------------------C
Confidence 88865442 57999999874 223332211111111 778998888888752 1
Q ss_pred CCeEEEEECCCCceEEEec
Q 002164 551 IPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 551 ~~~L~~~dl~~g~~~~l~~ 569 (958)
...|+++|+++...+.+..
T Consensus 224 ~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp TTEEEEEETTSCSCEEEEC
T ss_pred CCEEEEEeCCCCceEEEEe
Confidence 2369999998765555543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.7e-05 Score=79.97 Aligned_cols=180 Identities=13% Similarity=-0.048 Sum_probs=115.4
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|.++++++++...+...... ...++|.++++.|+++-.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~-----p~g~~~d~~~~~ly~~D~---------------------------------- 49 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 49 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred CCeEEEEECCCcceEehhcCCCc-----eEEEEEEeCCCEEEEEEC----------------------------------
Confidence 45799999998776655432221 558899998878887610
Q ss_pred hccCchhhhHHHHhhcceEEEEEcCC-----eeeecC-CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|++++++| ....+. .. .....+++++.++.|+++... .+.|.+
T Consensus 50 --------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~------------~~~I~~ 103 (316)
T 1ijq_A 50 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (316)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC------------CCEEEE
Confidence 234588888733 223332 22 345677888888888887532 348999
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
++++++..+.+..... ..+..++.+|++..|++ ++. .....|++++. +|...+.
T Consensus 104 ~~~~g~~~~~~~~~~~------------~~P~~iavdp~~g~ly~-~d~----------~~~~~I~~~~~---dG~~~~~ 157 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGFMYW-TDW----------GTPAKIKKGGL---NGVDIYS 157 (316)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTEEEE-EEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EeCCCCceEEEEECCC------------CCcceEEeCCCCCEEEE-Ecc----------CCCCeEEEEcC---CCCCeEE
Confidence 9998876655543111 24468899998877665 332 12357899885 6666555
Q ss_pred EEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.... ....+++|+++++.|+++.... .+|+++++++.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~---~~I~~~d~dg~ 196 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 196 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCC---CeEEEEecCCC
Confidence 53322 2345789999999998875332 57999999874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-05 Score=80.04 Aligned_cols=201 Identities=8% Similarity=0.035 Sum_probs=112.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC-ccccccccceEEe-cCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWV-NNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~-~~~~~~~~~~~ws-pDG~~l~~~~~~~~~ 267 (958)
....++++|||+ |+++.. ....|++++.++...+.+..... .........++++ ++|++++...
T Consensus 31 ~p~~v~~~~~g~-l~v~~~--------~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~----- 96 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVADT--------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER----- 96 (286)
T ss_dssp CEEEEEECTTCC-EEEEEG--------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-----
T ss_pred CCceEEECCCCC-EEEEEC--------CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-----
Confidence 456678999997 444321 25679999988654444422110 0000114467784 6776554320
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~~--~~~~~~~~SpDGk 344 (958)
. ....|++++.+|+ .+.+... .....++++|||+
T Consensus 97 ----------------------------------~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 133 (286)
T 1q7f_A 97 ----------------------------------S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR 133 (286)
T ss_dssp ----------------------------------G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC
T ss_pred ----------------------------------C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC
Confidence 0 1245777777553 3334322 4566788999997
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
|+++... .+.|++|+.+++..+.+..... ...+..++++|||+ +++ ++
T Consensus 134 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~-----------~~~p~~i~~~~~g~-l~v-~~------ 181 (286)
T 1q7f_A 134 -IIVVECK------------VMRVIIFDQNGNVLHKFGCSKH-----------LEFPNGVVVNDKQE-IFI-SD------ 181 (286)
T ss_dssp -EEEEETT------------TTEEEEECTTSCEEEEEECTTT-----------CSSEEEEEECSSSE-EEE-EE------
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEeCCCCc-----------cCCcEEEEECCCCC-EEE-EE------
Confidence 5444322 2479999988766555432110 02356899999997 433 22
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeec--cccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...+.|++++. ++.....+.... .....+++++||+ |+++...+. ..|.+++.++
T Consensus 182 -----~~~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~--~~i~~~~~~g 238 (286)
T 1q7f_A 182 -----NRAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNN--FNLTIFTQDG 238 (286)
T ss_dssp -----GGGTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSS--CEEEEECTTS
T ss_pred -----CCCCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCC--EEEEEECCCC
Confidence 23457888984 554333332211 2345689999996 444433221 2688888665
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=90.98 Aligned_cols=103 Identities=16% Similarity=-0.016 Sum_probs=69.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|.||++||....... .....| ......|+++||.|+. .+.+|+|.+. .......+|+.++++.
T Consensus 7 ~~~vvlvHG~~~~~~~------~~~~~~----~~~~~~L~~~G~~v~~---~d~~g~g~s~---~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 7 KYPIVLAHGMLGFDNI------LGVDYW----FGIPSALRRDGAQVYV---TEVSQLDTSE---VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp SSCEEEECCTTCCSEE------TTEESS----TTHHHHHHHTTCCEEE---ECCCSSSCHH---HHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCccc------cccccH----HHHHHHHHhCCCEEEE---EeCCCCCCch---hhHHHHHHHHHHHHHH
Confidence 5778999996421100 000011 2356678899999999 4555776653 1223444455554443
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
+ +.+++.++||||||.++..++.+.|++++++|.++++.
T Consensus 71 ~------~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 S------GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp H------CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h------CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 3 34689999999999999999999999999999998854
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00011 Score=81.46 Aligned_cols=180 Identities=13% Similarity=-0.046 Sum_probs=117.6
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|++++++++....+...... ...++|.+.+..|+++-.
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~-----~~~l~~d~~~~~lywsD~---------------------------------- 131 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 131 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSC-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred cceeEEEccCCcceeEeccccCc-----ceEEeeeeccCceEEEec----------------------------------
Confidence 56899999998776666443322 558899988778887610
Q ss_pred hccCchhhhHHHHhhcceEEEEEcCC-----eeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|++++++| ....+.. . .....+++.+.++.|+++... .+.|.+
T Consensus 132 --------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------------~~~I~~ 185 (400)
T 3p5b_L 132 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 185 (400)
T ss_dssp --------------TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------------CCeEEE
Confidence 224578888743 2233322 3 445567788778888887633 348999
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
.+++|+..+.+..... ..++.++..|.+..|++ ++. .....|++++. +|...+.
T Consensus 186 ~~~~g~~~~~l~~~~~------------~~P~~iavdp~~g~ly~-td~----------~~~~~I~~~~~---dG~~~~~ 239 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGFMYW-TDW----------GTPAKIKKGGL---NGVDIYS 239 (400)
T ss_dssp ECTTTCSEEEEEECSS------------CCEEEEEEETTTTEEEE-EEC----------SSSCCEEEEET---TSCSCEE
T ss_pred EeCCCCceEEEEeCCC------------CCcceEEEecccCeEEE-EeC----------CCCCEEEEEeC---CCCccEE
Confidence 9999876665543211 23568899998776655 332 22357899885 7766666
Q ss_pred EEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.... ....+++++++++.|+++... ..+|+++++++.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~---~~~I~~~d~dG~ 278 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVNGG 278 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTSC
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECC---CCEEEEEeCCCC
Confidence 64432 334678999999999887433 257999999874
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=88.78 Aligned_cols=262 Identities=13% Similarity=-0.003 Sum_probs=128.8
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceee-c-CCCCeEEEEEeec-----c----ccCCCCCceEEEEEcCCCcee
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW-S-QDGKHLAFSIRID-----A----EDSSSSKLRVWVADVDTGKAR 232 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~w-S-PDG~~iaf~~~~~-----~----~~~~~~~~~l~~~~~~~g~~~ 232 (958)
.|.+.++.+ .+...+..++.+......++ + |||++|+...... + .........+-++|.++.+..
T Consensus 113 rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~ 188 (595)
T 1fwx_A 113 RVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 188 (595)
T ss_dssp EEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE
T ss_pred EEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE
Confidence 577777744 33333324554444556666 5 9999985543210 0 011233557889999987654
Q ss_pred eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCC--cccccchhhhhccCchhhhHHHH
Q 002164 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKR--DIIQVRTFQDLLKDEYDEDLFDY 310 (958)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~d~~~~~~~~~~~~~ 310 (958)
.-...+.. ...++.+|||++++++......... +...... ..+.+-.+......-.++.. .
T Consensus 189 ~qI~Vgg~-----pd~~~~spdGk~~~vt~~~se~~~~----------i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~-~- 251 (595)
T 1fwx_A 189 WQVLVSGN-----LDNCDADYEGKWAFSTSYNSEKGMT----------LPEMTAAEMDHIVVFNIAEIEKAIAAGDY-Q- 251 (595)
T ss_dssp EEEEESSC-----CCCEEECSSSSEEEEEESCTTCCSS----------HHHHTCCSEEEEEEEEHHHHHHHHHHTCS-E-
T ss_pred EEEEeCCC-----ccceEECCCCCEEEEEecCcccCcc----------hhhccccccceEEEeeccceeEeccCCCe-e-
Confidence 32222221 3578899999999988543322100 0000000 00000000000000000000 0
Q ss_pred hhcceEEEEEc-C--Cee--eecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC
Q 002164 311 YATTQLVLVSL-D--GTV--KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (958)
Q Consensus 311 ~~~~~l~~~~~-~--g~~--~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~ 385 (958)
.-..+.++|. + +.. ..+..+.....+.+|||||+++++... ...+.++|+++.+.. ....
T Consensus 252 -~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~~~~--~~~~ 316 (595)
T 1fwx_A 252 -ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRFDAV--FYEN 316 (595)
T ss_dssp -EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGHHHH--HHSC
T ss_pred -EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECcccccc--cccc
Confidence 0134778887 5 422 334333455678999999999988643 348999998843200 0000
Q ss_pred cc-ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCC----CCCCC-ceEEEeecc---
Q 002164 386 LA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP----VQGEG-PEILHKLDL--- 456 (958)
Q Consensus 386 ~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~g~~-~~~l~~~~~--- 456 (958)
+. .........+..+++.++|+||| . +|.+.. ..+++..|+++. +.|.+ ...+...+.
T Consensus 317 l~~~~~v~~~v~vG~gP~h~aF~~dG-~-aY~t~~-----------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 317 ADPRSAVVAEPELGLGPLHTAFDGRG-N-AYTSLF-----------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp CCGGGGEEECCBCCSCEEEEEECTTS-E-EEEEET-----------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred cCcccceEEEcCCCCCcceEEECCCC-e-EEEEEe-----------cCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 00 00000011122567889999999 4 554443 244677777522 01112 122221111
Q ss_pred -----ccCceeeecCCceEEEEE
Q 002164 457 -----RYGGISWCDDSLALVYES 474 (958)
Q Consensus 457 -----~~~~~~~spDg~~l~~~~ 474 (958)
.......+|||++|+...
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccceeccceEeCCCCCEEEEcC
Confidence 124467899999987764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00015 Score=80.34 Aligned_cols=225 Identities=10% Similarity=0.035 Sum_probs=133.5
Q ss_pred cceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc----eEEEeccCCc
Q 002164 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPL 386 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~----~~~~l~~~~~ 386 (958)
...|.++++ ++....+... .....++|+++++.|+++... .+.|+.+++++. ....+....
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~------------~~~I~~~~~~g~~~~~~~~~~~~~~- 157 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD- 157 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEEC------CCCEEEECSS-
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC------------CCeEEEEEcccCCCCCcceEEEeCC-
Confidence 346888888 4455555444 667788999988999888633 247888888763 222222211
Q ss_pred cccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeec
Q 002164 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCD 465 (958)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~sp 465 (958)
...+.++++.+.+..|++. + ...+.|+++++ +|+..+.+.... .....++..|
T Consensus 158 -----------~~~p~glavD~~~~~lY~~-d-----------~~~~~I~~~~~---~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 158 -----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp -----------CSCEEEEEEETTTTEEEEE-E-----------TTTTEEEEECT---TTCSEEEEEECSSCCEEEEEEET
T ss_pred -----------CCCcccEEEEecCCceEEE-E-----------CCCCeEEEEeC---CCCceEEEEeCCCCCcceEEEec
Confidence 0234577888777766653 2 23457888885 776666664432 2345688999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCC
Q 002164 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (958)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (958)
.+..|+++.+... .+|+++++++. ....+.........+ ++++++++.|++...
T Consensus 212 ~~g~ly~td~~~~--~~I~~~~~dG~--~~~~~~~~~l~~P~g------lavd~~~~~lY~aD~---------------- 265 (400)
T 3p5b_L 212 VHGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS---------------- 265 (400)
T ss_dssp TTTEEEEEECSSS--CCEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET----------------
T ss_pred ccCeEEEEeCCCC--CEEEEEeCCCC--ccEEEEECCCCceEE------EEEEeCCCEEEEEEC----------------
Confidence 9889988865432 46999999884 333333222111112 778888888888752
Q ss_pred CCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 546 TPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 546 ~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
....|+++|+++...+.+...... . .....++.++..++++.. ....|++++..+|+
T Consensus 266 ----~~~~I~~~d~dG~~~~~~~~~~~~--l---------~~P~gl~v~~~~lywtd~---~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 266 ----KLHSISSIDVNGGNRKTILEDEKR--L---------AHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 322 (400)
T ss_dssp ----TTTEEEEEETTSCCCEEEEECSST--T---------SSEEEEEEETTEEEEEES---SSCSEEEEESSSCC
T ss_pred ----CCCEEEEEeCCCCccEEEEeCCCC--C---------CCCEEEEEeCCEEEEecC---CCCeEEEEEcCCCC
Confidence 123699999987766666543221 0 001223445556665542 23457777755554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00011 Score=78.64 Aligned_cols=224 Identities=7% Similarity=-0.048 Sum_probs=132.1
Q ss_pred cceEEEEEcCCe---eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCcc
Q 002164 313 TTQLVLVSLDGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~~g~---~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~ 387 (958)
...|.++++++. ...+... .....++|++.++.|+++... .+.|+.++++++.. +.+....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------------~~~I~r~~~~g~~~~~~~~~~~-- 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------------EEAIKRTEFNKTESVQNVVVSG-- 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------------TTEEEEEETTSSSCCCEEEEEC--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------------CCcEEEEEccCCCceEEEEcCC--
Confidence 356888998432 2333222 445678899988888888633 34788888886532 1111100
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spD 466 (958)
...+.++++.+.+..|++. + ...+.|++++. +|...+.+.. .......++..|+
T Consensus 78 ----------l~~p~glavd~~~g~ly~~-d-----------~~~~~I~~~~~---dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKLYWT-D-----------SETNRIEVSNL---DGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ----------CSCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ----------CCCccEEEEEcCCCeEEEE-E-----------CCCCEEEEEEC---CCCcEEEEEeCCCCCccEEEEeCC
Confidence 0234578888877776663 2 23457888885 6766665542 2233456889998
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+..|+++.+... .+|+++++++. ....+.........+ ++++|+++.|++...
T Consensus 133 ~g~ly~td~~~~--~~I~r~~~dG~--~~~~~~~~~l~~Png------lavd~~~~~lY~aD~----------------- 185 (318)
T 3sov_A 133 SGFMYWTDWGEV--PKIERAGMDGS--SRFIIINSEIYWPNG------LTLDYEEQKLYWADA----------------- 185 (318)
T ss_dssp GTEEEEEECSSS--CEEEEEETTSC--SCEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCEEEEEecCCC--CEEEEEEcCCC--CeEEEEECCCCCccE------EEEeccCCEEEEEEC-----------------
Confidence 888888765432 67999999874 223332221111111 788998888888752
Q ss_pred CCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
....|+++|+++...+.+...... .. ..++.++..++++.. ....|++++..+|+.
T Consensus 186 ---~~~~I~~~d~dG~~~~~~~~~~~~----~P---------~glav~~~~lywtd~---~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 ---KLNFIHKSNLDGTNRQAVVKGSLP----HP---------FALTLFEDILYWTDW---STHSILACNKYTGEG 241 (318)
T ss_dssp ---TTTEEEEEETTSCSCEEEECSCCS----CE---------EEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred ---CCCEEEEEcCCCCceEEEecCCCC----Cc---------eEEEEeCCEEEEEec---CCCeEEEEECCCCCc
Confidence 123699999987666655532211 01 122334556665522 345677777766543
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=96.18 Aligned_cols=108 Identities=13% Similarity=-0.102 Sum_probs=73.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHH-HHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~a 746 (958)
.|+||++||.... ....+.......| +..+|.|++ .|.+|+|.+.... .......+++.+.
T Consensus 69 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~---vD~~g~g~s~y~~~~~~~~~v~~~la~l 132 (449)
T 1hpl_A 69 RKTRFIIHGFIDK-------------GEESWLSTMCQNMFKVESVNCIC---VDWKSGSRTAYSQASQNVRIVGAEVAYL 132 (449)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHHHHCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC-------------CCccHHHHHHHHHHhcCCeEEEE---EeCCcccCCccHHHHHHHHHHHHHHHHH
Confidence 6899999995311 1011111123344 457999999 5555666653211 1123345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.+++.|+||||||.+|..++.+.|++++.++...|.
T Consensus 133 l~~L~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 133 VGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 88887543356789999999999999999999999999999988764
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=92.31 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=64.3
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 002164 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLL 777 (958)
Q Consensus 703 ~~~~~la~~G~~---vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a 777 (958)
..+..|+++||. |+. .+..|+|.+... ........+++.+.++.+.++. ..+++.|+||||||.++..++
T Consensus 72 ~l~~~L~~~Gy~~~~V~~---~D~~g~G~S~~~~~~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a 146 (342)
T 2x5x_A 72 SVYAELKARGYNDCEIFG---VTYLSSSEQGSAQYNYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATL 146 (342)
T ss_dssp CHHHHHHHTTCCTTSEEE---ECCSCHHHHTCGGGCCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEE---EeCCCCCccCCccccCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHH
Confidence 356678899998 888 445565544221 1122455677777777777652 236899999999999999999
Q ss_pred HhC--CCceeEEEEeccCCC
Q 002164 778 AHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 778 ~~~--p~~~~a~v~~~~~~~ 795 (958)
.++ |++++++|++++...
T Consensus 147 ~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 147 QYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHTCGGGEEEEEEESCCTT
T ss_pred HHcCchhhhcEEEEECCCcc
Confidence 987 889999999987643
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=95.77 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc---EEEEcCCCCCCCCCCcc---------------c
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF---AILGGPTTPIIGEGDEE---------------A 731 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~---~vl~~~~~~~~G~G~~~---------------~ 731 (958)
.|.||++||..... ..| ...+..|+++|| .|++ .+..|+|.+. +
T Consensus 22 ~ppVVLlHG~g~s~-----------~~w----~~la~~La~~Gy~~~~Via---~DlpG~G~S~~~~~Dv~~~G~~~~~G 83 (484)
T 2zyr_A 22 FRPVVFVHGLAGSA-----------GQF----ESQGMRFAANGYPAEYVKT---FEYDTISWALVVETDMLFSGLGSEFG 83 (484)
T ss_dssp CCCEEEECCTTCCG-----------GGG----HHHHHHHHHTTCCGGGEEE---ECCCHHHHHHHTTTSTTTTTGGGHHH
T ss_pred CCEEEEECCCCCCH-----------HHH----HHHHHHHHHcCCCcceEEE---EECCCCCccccccccccccccccccc
Confidence 57789999964211 111 245667889999 5888 4555666430 0
Q ss_pred -------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEE
Q 002164 732 -------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIA 789 (958)
Q Consensus 732 -------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~ 789 (958)
........+.++.+.++.+.++. +.+++.++||||||.+++.++.++| ++++++|+
T Consensus 84 ~n~~p~id~~~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVl 161 (484)
T 2zyr_A 84 LNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLIL 161 (484)
T ss_dssp HHHGGGSCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEE
T ss_pred cccccccccccccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEE
Confidence 00123345677777787777753 2368999999999999999999987 48999999
Q ss_pred eccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCC--CCCChHHHHHHHHHHHhCCCcEEE
Q 002164 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN--SGTLTMQSDRFFNALKGHGALCRL 867 (958)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~--v~~~~~~~~~~~~~l~~~g~~~~~ 867 (958)
+++.++.. + ....++|.+.|..|.. ++. +.. .++. ..+.
T Consensus 162 Iapp~~~d----------------------~-------p~g~~~L~ilG~~d~~p~V~~-pss------~L~~---ga~~ 202 (484)
T 2zyr_A 162 LDGVWGVD----------------------A-------PEGIPTLAVFGNPKALPALGL-PEE------KVVY---NATN 202 (484)
T ss_dssp ESCCCSEE----------------------C-------CTTSCEEEEEECGGGSCCSSC-CSS------CCEE---TSEE
T ss_pred ECCccccc----------------------c-------CcCCHHHHHhCCCCcCCcccC-hhH------hcCC---CceE
Confidence 99875410 0 0235677777766531 110 111 1210 1256
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 868 VILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 868 ~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
+++++++|... ..+ ..+.+.+.+||...
T Consensus 203 v~i~~a~H~~l-l~d-p~v~~~Vl~fL~~~ 230 (484)
T 2zyr_A 203 VYFNNMTHVQL-CTS-PETFAVMFEFINGY 230 (484)
T ss_dssp EEETTCCHHHH-HHC-HHHHHHHHHHHHSS
T ss_pred EEECCCCcccc-ccC-HHHHHHHHHHhccc
Confidence 67799999853 222 34566788888753
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=94.32 Aligned_cols=107 Identities=11% Similarity=-0.075 Sum_probs=71.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (958)
.|+||++||.... ....+.......|++ .+|.|+++|. +|+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~s-------------~~~~w~~~l~~~ll~~~~~~VI~vD~---~g~g~s~y~~~~~~~~~~a~~l~~l 133 (450)
T 1rp1_A 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCICVDW---KKGSQTSYTQAANNVRVVGAQVAQM 133 (450)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEEEEC---HHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEccCCCC-------------CCcchHHHHHHHHHhcCCeEEEEEeC---ccccCCcchHHHHHHHHHHHHHHHH
Confidence 6899999995311 110111122334554 4899999544 455544211 11233456778888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+++|.++..++.+++.|+||||||.+|..++.+.|+ ++.++...|.
T Consensus 134 l~~L~~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 134 LSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred HHHHHHhcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 888865433566899999999999999999999998 9999988764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.002 Score=75.53 Aligned_cols=208 Identities=11% Similarity=-0.016 Sum_probs=121.5
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.....++|.+.+..|+++... .+.|+.++++|+..+.+..... ..+.++++.+.+.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~------------~~~I~r~~~~g~~~~~v~~~~~------------~~p~GlAvD~~~~ 404 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDE------------VRAIRRSFIDGSGSQFVVTAQI------------AHPDGIAVDWVAR 404 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC------------SCCCEEEEETTTT
T ss_pred CccEEEEEEcCCCeEEEEeCC------------CCeEEEEEcCCCccEEEEECCC------------CCcCceEEecccC
Confidence 344567788877788877632 2378888888765444432111 2345788887777
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.|++. + ...+.|.+.++ +|+..+.+.... .....++..|....|+++.+... .+|+++++++
T Consensus 405 ~lY~t-D-----------~~~~~I~v~~~---~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~--~~I~r~~~dG 467 (619)
T 3s94_A 405 NLYWT-D-----------TGTDRIEVTRL---NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI--PKIERAALDG 467 (619)
T ss_dssp EEEEE-E-----------TTTTEEEEEET---TSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS--CEEEEEETTS
T ss_pred cEEEE-e-----------CCCCcEEEEeC---CCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC--CEEEEEccCC
Confidence 76653 2 23567888885 776665664322 23456889998778888865442 6799999988
Q ss_pred CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
. ....+.........+ ++.+++++.|++... ...+|..+++++...+.+...
T Consensus 468 ~--~~~~l~~~~l~~P~G------lalD~~~~~LY~aD~--------------------~~~~I~~~~~dG~~~~~~~~~ 519 (619)
T 3s94_A 468 S--DRVVLVNTSLGWPNG------LALDYDEGKIYWGDA--------------------KTDKIEVMNTDGTGRRVLVED 519 (619)
T ss_dssp C--SCEEEECSSCSCEEE------EEEETTTTEEEEEET--------------------TTTEEEEEESSSCCCEEEEEC
T ss_pred C--ccEEEEeCCCCCCee------eEEcccCCEEEEEEC--------------------CCCEEEEEecCCCceEEEecc
Confidence 4 233333222211111 567777777777641 123688899877666555432
Q ss_pred CcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEe
Q 002164 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (958)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~L 624 (958)
... ....+..++..++++-. ....|++++..+|+.+.|
T Consensus 520 ~l~-------------~P~glav~~~~ly~tD~---~~~~I~~~~k~~g~~~~~ 557 (619)
T 3s94_A 520 KIP-------------HIFGFTLLGDYVYWTDW---QRRSIERVHKRSAEREVI 557 (619)
T ss_dssp CCC-------------SSCCEEEETTEEEEECT---TSSCEEEEESSSCCEEEE
T ss_pred CCC-------------CcEEEEEECCEEEEeec---CCCeEEEEEcCCCceEEE
Confidence 211 01123334454444332 234577777777654443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00018 Score=76.98 Aligned_cols=137 Identities=9% Similarity=-0.006 Sum_probs=88.3
Q ss_pred ceEEEEEc-CCe--eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcccc
Q 002164 314 TQLVLVSL-DGT--VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (958)
Q Consensus 314 ~~l~~~~~-~g~--~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~ 389 (958)
..|+++++ ++. ...+... .....+++.+.++.|+++... .+.|.+++++|...+.+.....
T Consensus 57 ~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~dG~~~~~l~~~~~--- 121 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEVSNLDGSLRKVLFWQEL--- 121 (318)
T ss_dssp TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC---
T ss_pred CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC------------CCEEEEEECCCCcEEEEEeCCC---
Confidence 45888888 332 1222222 345567788888888887532 2489999999876555532111
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCc
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSL 468 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~ 468 (958)
..+..+++.|++..|++ ++. .....|++++. +|...+.+.... ..-.+++|+++++
T Consensus 122 ---------~~P~giavdp~~g~ly~-td~----------~~~~~I~r~~~---dG~~~~~~~~~~l~~Pnglavd~~~~ 178 (318)
T 3sov_A 122 ---------DQPRAIALDPSSGFMYW-TDW----------GEVPKIERAGM---DGSSRFIIINSEIYWPNGLTLDYEEQ 178 (318)
T ss_dssp ---------SSEEEEEEEGGGTEEEE-EEC----------SSSCEEEEEET---TSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred ---------CCccEEEEeCCCCEEEE-Eec----------CCCCEEEEEEc---CCCCeEEEEECCCCCccEEEEeccCC
Confidence 23467889998776655 322 22457999985 776665554322 2345789999999
Q ss_pred eEEEEEeccccceEEEEEcCCCC
Q 002164 469 ALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.|+++.... .+|+++++++.
T Consensus 179 ~lY~aD~~~---~~I~~~d~dG~ 198 (318)
T 3sov_A 179 KLYWADAKL---NFIHKSNLDGT 198 (318)
T ss_dssp EEEEEETTT---TEEEEEETTSC
T ss_pred EEEEEECCC---CEEEEEcCCCC
Confidence 999885332 57999999874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=92.99 Aligned_cols=180 Identities=13% Similarity=-0.063 Sum_probs=112.3
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|+++++++++...+...... ...++|.+++..|+++-.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~-----p~gla~d~~~~~Ly~sD~---------------------------------- 425 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 425 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTT-----CCCCEEETTTTEEEECCT----------------------------------
T ss_pred ccceEEEeCCCCcceeeeccCcc-----eEEEccccccCeEEEEec----------------------------------
Confidence 34788889888776655433222 457899998888887610
Q ss_pred hccCchhhhHHHHhhcceEEEEEcCC-----eeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|++++++| ....+.. . .....+++.+.++.|+++... .+.|++
T Consensus 426 --------------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~------------~~~I~v 479 (699)
T 1n7d_A 426 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 479 (699)
T ss_dssp --------------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT------------TSCEEE
T ss_pred --------------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc------------CCeEEE
Confidence 123477888733 2222222 2 334567777777777776422 347999
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
++++++..+.+..... ..+..++++|++..|++. +. .....|+++++ +|...+.
T Consensus 480 ~d~dg~~~~~l~~~~~------------~~P~giavDp~~g~ly~t-d~----------~~~~~I~~~~~---dG~~~~~ 533 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQG------------SKPRAIVVDPVHGFMYWT-DW----------GTPAKIKKGGL---NGVDIYS 533 (699)
T ss_dssp EBSSSCCEEEECCCSS------------CCCCCEECCSSSSCCEEC-CC----------SSSCCEEBCCS---SSCCCCE
T ss_pred EecCCCceEEEEeCCC------------CCcceEEEccCCCcEEEc-cc----------CCCCeEEEEeC---CCCCeeE
Confidence 9999876666543211 234678999988877762 11 12356888874 6655555
Q ss_pred EEee-ccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+... -....+++|+|++++|+++.... .+|+++++++.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~---~~I~~~d~dG~ 572 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 572 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTT---TEEEEECSSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCC---CeEEEEccCCC
Confidence 5322 22346799999999998875332 57999999874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00066 Score=71.57 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+++|||+ |+++. .+...|++++.+ ++.+.+...... .....+++.+||++.+...
T Consensus 58 ~~~~i~~~~~g~-l~v~~--------~~~~~i~~~~~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~------- 117 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTE--------NAANKIGRITKK-GIIKEYTLPNPD---SAPYGITEGPNGDIWFTEM------- 117 (299)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEET-------
T ss_pred ceeeEEECCCCC-EEEeC--------CCCCeEEEECCC-CcEEEEeCCCcC---CCceeeEECCCCCEEEEec-------
Confidence 567788999986 44432 124579999987 444433311111 0155778889886544320
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC--C-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDGk~l 346 (958)
....|++++.+|+...+.. . .....++++|||+ |
T Consensus 118 ------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l 154 (299)
T 2z2n_A 118 ------------------------------------------NGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-L 154 (299)
T ss_dssp ------------------------------------------TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-E
T ss_pred ------------------------------------------CCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-E
Confidence 1235777777554443321 2 4466788999996 4
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
++.... .+.+++++. ++..+.+.. +.. ...+..+.+++||+ +++. .
T Consensus 155 ~v~~~~------------~~~i~~~~~-~g~~~~~~~-~~~----------~~~~~~i~~~~~g~-l~v~-~-------- 200 (299)
T 2z2n_A 155 WFTENQ------------NNAIGRITE-SGDITEFKI-PTP----------ASGPVGITKGNDDA-LWFV-E-------- 200 (299)
T ss_dssp EEEETT------------TTEEEEECT-TCCEEEEEC-SST----------TCCEEEEEECTTSS-EEEE-E--------
T ss_pred EEEeCC------------CCEEEEEcC-CCcEEEeeC-CCC----------CCcceeEEECCCCC-EEEE-c--------
Confidence 444321 237888888 444433311 100 02345788999987 3332 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEee--ccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
...+.|++++. + ++...+... ......+.++++|+ |+++.... ..|++++++
T Consensus 201 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~d~~ 254 (299)
T 2z2n_A 201 ---IIGNKIGRITT---S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGA---NKIGRLTSN 254 (299)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEEETT
T ss_pred ---cCCceEEEECC---C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCC---ceEEEECCC
Confidence 12456888873 3 333333211 23345688899987 55443222 458888874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-05 Score=90.97 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=132.6
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC----ceEEEeccCCcc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG----IFVRELCDLPLA 387 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~----~~~~~l~~~~~~ 387 (958)
..|+++++ +++...+... .....++|++++..|+++... .+.|+.+++++ .....+....
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~------------~~~I~~~~~~g~~~~~~~~~~i~~~-- 451 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD-- 451 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT------------TTSBEEEESCCCCC-CCCCCBCCSC--
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC------------CCeEEEEecCCCCCCcceEEEEeCC--
Confidence 46888888 5555555444 566788999998888887532 24788888876 2211111100
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spD 466 (958)
...+..+++.+.+..|++. + ...+.|++++. +|...+.+... ......++++|+
T Consensus 452 ----------~~~P~glavD~~~g~LY~t-D-----------~~~~~I~v~d~---dg~~~~~l~~~~~~~P~giavDp~ 506 (699)
T 1n7d_A 452 ----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFREQGSKPRAIVVDPV 506 (699)
T ss_dssp ----------C--CCCEECCCSSSBCEEC-C-----------TTTSCEEEEBS---SSCCEEEECCCSSCCCCCEECCSS
T ss_pred ----------CCCcceEEEEeeCCcEEEE-e-----------ccCCeEEEEec---CCCceEEEEeCCCCCcceEEEccC
Confidence 0234567888777777662 1 23456888885 66665555332 234567899999
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+.+|+++.+... .+|+++++++.. .+.+.........+ ++|+|++++|++...
T Consensus 507 ~g~ly~td~~~~--~~I~~~~~dG~~--~~~l~~~~l~~PnG------lavd~~~~~LY~aD~----------------- 559 (699)
T 1n7d_A 507 HGFMYWTDWGTP--AKIKKGGLNGVD--IYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 559 (699)
T ss_dssp SSCCEECCCSSS--CCEEBCCSSSCC--CCEESCSSCSSCCC------EEECTTTCCEEEEET-----------------
T ss_pred CCcEEEcccCCC--CeEEEEeCCCCC--eeEEEeCCCCCccE------EEEeccCCEEEEEec-----------------
Confidence 888888754332 569999988742 22222211111111 789999988888752
Q ss_pred CCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
....|+++++++...+.+...... ......++.|++.++++.. ....|++++..+|+..
T Consensus 560 ---~~~~I~~~d~dG~~~~~~~~~~~~-----------~~~P~glavd~~~lywtd~---~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 560 ---KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGSDV 618 (699)
T ss_dssp ---TTTEEEEECSSSSCCEEECCCSSS-----------CSSCCCCEEETTEEEEECS---TTTCEEEEETTTEEEE
T ss_pred ---CCCeEEEEccCCCceEEEEecCCc-----------CCCceEeEEECCEEEEEeC---CCCeEEEEEccCCCce
Confidence 123689999986655555432211 0011234556666665552 2356888887666543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00059 Score=71.38 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=107.5
Q ss_pred CCCCceEEEEEcCCCceeeccCCCC-ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccc
Q 002164 215 SSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVR 293 (958)
Q Consensus 215 ~~~~~~l~~~~~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 293 (958)
+.+...|+++|.++|+...-...+. .. ...+.++|||++|+ +
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~~~~~~pdG~ilv-s-------------------------------- 53 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWE----CNSVAATKAGEILF-S-------------------------------- 53 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCC----CCEEEECTTSCEEE-E--------------------------------
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCC----CcCeEECCCCCEEE-e--------------------------------
Confidence 3457789999997887654433322 11 45788999999777 3
Q ss_pred hhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 294 TFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 294 ~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....++.++.+|+ ...+..+ ..+....++|||+.|+..... ...++.
T Consensus 54 ------------------~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~ 103 (276)
T 3no2_A 54 ------------------YSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILE 103 (276)
T ss_dssp ------------------CBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEE
T ss_pred ------------------CCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEE
Confidence 1123555555442 2333222 345567889999998876631 236777
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
++.+|+....+....... ......+.+...+||+.++.. ...+.|+.++. +|+...+
T Consensus 104 vd~~Gk~l~~~~~~~~~~-------~~~~~~~~v~~~~~G~~lv~~-------------~~~~~v~~~d~---~G~~~w~ 160 (276)
T 3no2_A 104 VNMKGEVLSKTEFETGIE-------RPHAQFRQINKNKKGNYLVPL-------------FATSEVREIAP---NGQLLNS 160 (276)
T ss_dssp ECTTSCEEEEEEECCSCS-------SGGGSCSCCEECTTSCEEEEE-------------TTTTEEEEECT---TSCEEEE
T ss_pred EeCCCCEEEEEeccCCCC-------cccccccCceECCCCCEEEEe-------------cCCCEEEEECC---CCCEEEE
Confidence 887777665543211100 001233456789999876542 34567888884 5544333
Q ss_pred EEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
... ..........++|+.|+.... + .+|+.++++++
T Consensus 161 ~~~-~~~~~~~~~~~~g~~~v~~~~-~---~~v~~~d~~tG 196 (276)
T 3no2_A 161 VKL-SGTPFSSAFLDNGDCLVACGD-A---HCFVQLNLESN 196 (276)
T ss_dssp EEC-SSCCCEEEECTTSCEEEECBT-T---SEEEEECTTTC
T ss_pred EEC-CCCccceeEcCCCCEEEEeCC-C---CeEEEEeCcCC
Confidence 322 233445677889987765432 2 46999998864
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00032 Score=84.20 Aligned_cols=180 Identities=13% Similarity=-0.046 Sum_probs=117.0
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|+.+++++++...+...... ...++|.+.+..||++-.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~-----~~gl~~d~~~~~lY~sD~---------------------------------- 443 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL---------------------------------- 443 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET----------------------------------
T ss_pred ccceeEeeccCCcceeeecCCCc-----eEEEeecccCCeeEEeec----------------------------------
Confidence 45688888887766665543322 457888887777776610
Q ss_pred hccCchhhhHHHHhhcceEEEEEcCC-----eeeecCC-C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|++++++| ....+.. . .....+++.+.++.|+++... .+.|++
T Consensus 444 --------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v 497 (791)
T 3m0c_C 444 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 497 (791)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEE
Confidence 224577877743 2233332 3 455677888889999888633 348999
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
.+++|+..+.|....+ ..++++++.|.+..|++ ++. +....|+++++ +|...+.
T Consensus 498 ~~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g~LYw-tD~----------g~~~~I~~~~~---dG~~~~~ 551 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGFMYW-TDW----------GTPAKIKKGGL---NGVDIYS 551 (791)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTEEEE-EEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EeCCCCeEEEEEeCCC------------CCcceEEEecCCCCEEE-ecC----------CCCCeEEEEec---CCCceEE
Confidence 9999887666643211 23568999998776665 332 22357888885 7776666
Q ss_pred EEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.... ....+++++++++.|+++... ..+|+++++++.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~---~~~I~~~d~dG~ 590 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVNGG 590 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTSC
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCC---CCcEEEEecCCC
Confidence 64433 334568999999998887432 257999999885
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0015 Score=68.69 Aligned_cols=191 Identities=16% Similarity=0.120 Sum_probs=106.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+.++|||+ |++.. .....|++++.+ ++...+...... ..+..+++++||++.+.. .
T Consensus 16 ~~~~i~~d~~g~-l~v~~--------~~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 75 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQ--------HKANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFTE-N------ 75 (299)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CccceEECCCCC-EEEEe--------cCCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEeC-C------
Confidence 467788899997 44432 124579999988 665544321111 115578888999755533 0
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC--C-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDGk~l 346 (958)
....|++++.+|+.+.+.. . .....++++|||+ |
T Consensus 76 ------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l 112 (299)
T 2z2n_A 76 ------------------------------------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD-I 112 (299)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSC-E
T ss_pred ------------------------------------------CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCC-E
Confidence 1234777777554443321 2 4566788899986 4
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
++.... .+.+++++.++ ....+.... . ...+..+.+++||+ +++. .
T Consensus 113 ~v~~~~------------~~~i~~~d~~g-~~~~~~~~~-~----------~~~~~~i~~~~~g~-l~v~-~-------- 158 (299)
T 2z2n_A 113 WFTEMN------------GNRIGRITDDG-KIREYELPN-K----------GSYPSFITLGSDNA-LWFT-E-------- 158 (299)
T ss_dssp EEEETT------------TTEEEEECTTC-CEEEEECSS-T----------TCCEEEEEECTTSC-EEEE-E--------
T ss_pred EEEecC------------CceEEEECCCC-CEEEecCCC-C----------CCCCceEEEcCCCC-EEEE-e--------
Confidence 444321 23788888844 333322110 0 02346788999985 4332 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
...+.|++++. + ++...+.. .......++++++|+ |++..... ..|+++++
T Consensus 159 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~---~~i~~~~~ 211 (299)
T 2z2n_A 159 ---NQNNAIGRITE---S-GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIG---NKIGRITT 211 (299)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT---TEEEEECT
T ss_pred ---CCCCEEEEEcC---C-CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCC---ceEEEECC
Confidence 22457888873 3 34433311 122344678899987 44443222 46899998
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00065 Score=81.56 Aligned_cols=188 Identities=10% Similarity=0.038 Sum_probs=116.6
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc----eEEEeccCCcc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI----FVRELCDLPLA 387 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~----~~~~l~~~~~~ 387 (958)
..|..+++ .+....+... .....++|++.+.+|+++... .+.|+.+++++. ..+.+....
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~------------~~~I~~~~l~g~~~~~~~~~vi~~~-- 469 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD-- 469 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS--
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc------------ceeEEEEeccCCCCCcceeEEEecC--
Confidence 45778888 4555555444 556678899888888887633 247888888863 222222211
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spD 466 (958)
...+.++++.+.++.||+. + ...+.|+++++ +|...+.|.... .....+++.|.
T Consensus 470 ----------l~~P~GLAvD~~~~~LY~t-D-----------~~~~~I~v~~l---dG~~~~~l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 470 ----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDPV 524 (791)
T ss_dssp ----------CSCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSSSEEEEEECTTCCEEEEEEETT
T ss_pred ----------CCCcceeeeeecCCcEEEE-e-----------cCCCeEEEEeC---CCCeEEEEEeCCCCCcceEEEecC
Confidence 1345678898888877663 2 23557899985 777666664432 23567899999
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
+..|+++.+... .+|+++++++. ..+.+.........+ +++.+++.+|++...
T Consensus 525 ~g~LYwtD~g~~--~~I~~~~~dG~--~~~~lv~~~l~~P~G------LavD~~~~~LYwaD~----------------- 577 (791)
T 3m0c_C 525 HGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 577 (791)
T ss_dssp TTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred CCCEEEecCCCC--CeEEEEecCCC--ceEEEEeCCCCCceE------EEEecCCCeEEEEeC-----------------
Confidence 889998865442 57999999884 333333222111111 567777777777641
Q ss_pred CCCCCCeEEEEECCCCceEEEecC
Q 002164 547 PEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
....|+++++++...+.+...
T Consensus 578 ---~~~~I~~~d~dG~~~~~v~~~ 598 (791)
T 3m0c_C 578 ---KLHSISSIDVNGGNRKTILED 598 (791)
T ss_dssp ---TTTEEEEEETTSCSCEEEEEC
T ss_pred ---CCCcEEEEecCCCceEEEecC
Confidence 123699999987777666543
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=73.96 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=46.0
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 710 ~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
+++|.|+. .+.+|+|.+...........+|+.+.++.+ +.+++.++|||+||.+++.++.++|.
T Consensus 40 ~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 40 PEGYAFYL---LDLPGYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp CTTSEEEE---ECCTTSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred hCCcEEEE---ECCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 34599999 566677777544322455556665555543 34589999999999999999999875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00045 Score=72.29 Aligned_cols=80 Identities=15% Similarity=0.003 Sum_probs=47.1
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~ 242 (958)
..|++++.++ | ....++.. ........+.++|||+.|+ +. ...|+.++.++....++.......
T Consensus 15 ~~v~~~d~~t-G--~~~w~~~~-~~~~~~~~~~~~pdG~ilv-s~----------~~~V~~~d~~G~~~W~~~~~~~~~- 78 (276)
T 3no2_A 15 NKIAIINKDT-K--EIVWEYPL-EKGWECNSVAATKAGEILF-SY----------SKGAKMITRDGRELWNIAAPAGCE- 78 (276)
T ss_dssp SEEEEEETTT-T--EEEEEEEC-CTTCCCCEEEECTTSCEEE-EC----------BSEEEEECTTSCEEEEEECCTTCE-
T ss_pred CEEEEEECCC-C--eEEEEeCC-CccCCCcCeEECCCCCEEE-eC----------CCCEEEECCCCCEEEEEcCCCCcc-
Confidence 4678888644 3 22334331 1112467788999998665 22 346888888443334433211111
Q ss_pred cccccceEEecCCeEEEEE
Q 002164 243 NAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (958)
+..+.+++||+.|+..
T Consensus 79 ---~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 79 ---MQTARILPDGNALVAW 94 (276)
T ss_dssp ---EEEEEECTTSCEEEEE
T ss_pred ---ccccEECCCCCEEEEe
Confidence 5577899999988865
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.013 Score=68.62 Aligned_cols=123 Identities=4% Similarity=-0.133 Sum_probs=70.2
Q ss_pred CceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEE
Q 002164 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYI 538 (958)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 538 (958)
..+.|.+.+..|+++.... .+|+++++++. ....+.........+ +++...++.|++...
T Consensus 352 ~~ld~d~~~~~ly~sD~~~---~~I~r~~~~g~--~~~~v~~~~~~~p~G------lAvD~~~~~lY~tD~--------- 411 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEV---RAIRRSFIDGS--GSQFVVTAQIAHPDG------IAVDWVARNLYWTDT--------- 411 (619)
T ss_dssp EEEEEETTTTEEEEEETTT---TEEEEEETTSC--SCEEEECSSCSCCCE------EEEETTTTEEEEEET---------
T ss_pred EEEEEEcCCCeEEEEeCCC---CeEEEEEcCCC--ccEEEEECCCCCcCc------eEEecccCcEEEEeC---------
Confidence 3467888788888875332 46999998874 223332221111111 455555666666541
Q ss_pred EEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 539 LLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 539 ~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
....|.+.++++...+.|....- ..+. ..++.|....++++-.+. .+.|++.++++
T Consensus 412 -----------~~~~I~v~~~~G~~~~~l~~~~l----~~P~-------~iavdp~~G~ly~tD~g~--~~~I~r~~~dG 467 (619)
T 3s94_A 412 -----------GTDRIEVTRLNGTMRKILISEDL----EEPR-------AIVLDPMVGYMYWTDWGE--IPKIERAALDG 467 (619)
T ss_dssp -----------TTTEEEEEETTSCSCEEEECTTC----CSEE-------EEEEETTTTEEEEEECSS--SCEEEEEETTS
T ss_pred -----------CCCcEEEEeCCCCeEEEEEECCC----CCee-------eEEEEcCCCcEEEecCCC--CCEEEEEccCC
Confidence 12368888887766555543221 1112 235666666777766543 56799998877
Q ss_pred CCeeEee
Q 002164 619 KKSCQIT 625 (958)
Q Consensus 619 g~~~~Lt 625 (958)
...+.|.
T Consensus 468 ~~~~~l~ 474 (619)
T 3s94_A 468 SDRVVLV 474 (619)
T ss_dssp CSCEEEE
T ss_pred CccEEEE
Confidence 6655554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00084 Score=71.45 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=122.1
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
+.+..++.+.....++|+|||+ |+++.. ....|++++.+++....+ ..+.. ...+++++||+ |+
T Consensus 23 ~~~~~~p~~~~pegia~~~~g~-lyv~d~--------~~~~I~~~d~~g~~~~~~-~~~~~-----p~gia~~~dG~-l~ 86 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAPDGT-IFVTNH--------EVGEIVSITPDGNQQIHA-TVEGK-----VSGLAFTSNGD-LV 86 (306)
T ss_dssp EEEEEECTTCCEEEEEECTTSC-EEEEET--------TTTEEEEECTTCCEEEEE-ECSSE-----EEEEEECTTSC-EE
T ss_pred eEeEeCCCCCCcceEEECCCCC-EEEEeC--------CCCeEEEECCCCceEEEE-eCCCC-----ceeEEEcCCCc-EE
Confidence 3333344334566789999987 555431 256899999887543322 22221 55788999998 44
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---cccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYT 335 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~ 335 (958)
++.... ...+|+.++. +|+.+.+... ....
T Consensus 87 vad~~~----------------------------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 120 (306)
T 2p4o_A 87 ATGWNA----------------------------------------------DSIPVVSLVKSDGTVETLLTLPDAIFLN 120 (306)
T ss_dssp EEEECT----------------------------------------------TSCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred EEeccC----------------------------------------------CcceEEEEcCCCCeEEEEEeCCCccccC
Confidence 441000 1124777776 7766554321 1112
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCC-ccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
.++..+++ .+++.... .+.|+.+|.+++..+.....+ .....+. ........+ +|||+.|+
T Consensus 121 g~~~~~~~-~~~v~d~~------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~---~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 121 GITPLSDT-QYLTADSY------------RGAIWLIDVVQPSGSIWLEHPMLARSNSE---SVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp EEEESSSS-EEEEEETT------------TTEEEEEETTTTEEEEEEECGGGSCSSTT---CCSCSEEEE--EEETTEEE
T ss_pred cccccCCC-cEEEEECC------------CCeEEEEeCCCCcEeEEEECCcccccccc---CCCCcCCCc--CcCCCEEE
Confidence 22333444 44443311 348888888754322211000 0000000 000122334 89998877
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCC--CceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCC
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~ 492 (958)
+. + ...+.|++++.+. ++. ..+.+.. ......+++++||+ |+ .++... .+|++++.++
T Consensus 183 v~-d-----------~~~~~I~~~~~~~-~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~-va~~~~--~~V~~~~~~G-- 242 (306)
T 2p4o_A 183 VS-N-----------TEKMLLLRIPVDS-TDKPGEPEIFVE-QTNIDDFAFDVEGN-LY-GATHIY--NSVVRIAPDR-- 242 (306)
T ss_dssp EE-E-----------TTTTEEEEEEBCT-TSCBCCCEEEEE-SCCCSSEEEBTTCC-EE-EECBTT--CCEEEECTTC--
T ss_pred EE-e-----------CCCCEEEEEEeCC-CCCCCccEEEec-cCCCCCeEECCCCC-EE-EEeCCC--CeEEEECCCC--
Confidence 73 1 2356789998621 121 1222222 23456789999995 44 444333 4588898764
Q ss_pred CCcEEEecc--CCccccCCCCCCceEec---cCCceEEEEe
Q 002164 493 VAPRILFDR--SSEDVYSDPGSPMMRRT---STGTYVIAKI 528 (958)
Q Consensus 493 ~~~~~~~~~--~~~~~~~~~~~~~~~~s---pdG~~l~~~~ 528 (958)
+...+... ......+ ++|. ||+++|+...
T Consensus 243 -~~~~~~~~~~~~~~p~~------~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 -STTIIAQAEQGVIGSTA------VAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -CEEEEECGGGTCTTEEE------EEECCSTTTTTEEEEEE
T ss_pred -CEEEEeecccccCCceE------EEEecccCCCCEEEEEC
Confidence 22222111 1111111 5677 7888777665
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0013 Score=77.08 Aligned_cols=189 Identities=11% Similarity=0.003 Sum_probs=123.8
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
..|+|+. ...|.++++++.....+....... ....++|.+++..|+++-.
T Consensus 7 ~~Ll~s~----------~~~I~~i~l~~~~~~~~~~~~~~~---~~~~l~~d~~~~~lywtD~----------------- 56 (628)
T 4a0p_A 7 AFLLFSR----------RADIRRISLETNNNNVAIPLTGVK---EASALDFDVTDNRIYWTDI----------------- 56 (628)
T ss_dssp CEEEEEE----------TTEEEEEESSCTTCEEECCCCSCS---CEEEEEEETTTTEEEEEET-----------------
T ss_pred cEEEEEe----------CCcEEEEECCCCCcceEEEcCCCC---ceEEEEEECCCCEEEEEEC-----------------
Confidence 3678864 568999999986544333222210 0457889998888887610
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC-eeeecC-CC-ccccccccCCCCcEEEEEeecCCccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG-PP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 357 (958)
....|++++++| ..+.+. .+ .....+++.+.++.|+++...
T Consensus 57 -------------------------------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~----- 100 (628)
T 4a0p_A 57 -------------------------------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG----- 100 (628)
T ss_dssp -------------------------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT-----
T ss_pred -------------------------------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC-----
Confidence 234688888844 333333 23 445667788788888887532
Q ss_pred cccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEE
Q 002164 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (958)
Q Consensus 358 ~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~ 437 (958)
.+.|.+.+++|+..+.|..... ..++.+++.|....|++ ++. +....|++
T Consensus 101 -------~~~I~v~~~dG~~~~~l~~~~l------------~~P~~iavdp~~G~lY~-tD~----------g~~~~I~r 150 (628)
T 4a0p_A 101 -------TNRIEVSKLDGQHRQVLVWKDL------------DSPRALALDPAEGFMYW-TEW----------GGKPKIDR 150 (628)
T ss_dssp -------TTEEEEEETTSTTCEEEECSSC------------CCEEEEEEETTTTEEEE-EEC----------SSSCEEEE
T ss_pred -------CCEEEEEecCCCcEEEEEeCCC------------CCcccEEEccCCCeEEE-eCC----------CCCCEEEE
Confidence 3489999999876665543211 24578999987666554 332 22457899
Q ss_pred EeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++. +|...+.+...-....+++++++++.|+++.... ..|+.+++++.
T Consensus 151 ~~~---dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~---~~I~~~d~dG~ 198 (628)
T 4a0p_A 151 AAM---DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT---NLIESSNMLGL 198 (628)
T ss_dssp EET---TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred EeC---CCCceEEEECCCCCcceEEEccccCEEEEEECCC---CEEEEEcCCCC
Confidence 885 7777777654333456789999999998875332 57999999885
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00052 Score=70.40 Aligned_cols=199 Identities=11% Similarity=0.002 Sum_probs=114.2
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
.....|+||| +|+.+.. ..+...|.++|+++|+..+-...+... .....+.+|+.|+.+..
T Consensus 23 ~~Gl~~~~dg-~Lyvstg------~~~~s~v~~iD~~tg~v~~~i~l~~~~-----fgeGi~~~g~~lyv~t~------- 83 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTG------LYGRSSVRQVALQTGKVENIHKMDDSY-----FGEGLTLLNEKLYQVVW------- 83 (266)
T ss_dssp EEEEEECSTT-EEEEEEC------STTTCEEEEEETTTCCEEEEEECCTTC-----CEEEEEEETTEEEEEET-------
T ss_pred cccEEEeCCC-eEEEECC------CCCCCEEEEEECCCCCEEEEEecCCCc-----ceEEEEEeCCEEEEEEe-------
Confidence 3567899996 5555431 234679999999999876654333321 12234445667776610
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCCccccccccCCCCcEEEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....++++|. +++. ..+.-+ ......+++||+++++
T Consensus 84 -----------------------------------------~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~v 121 (266)
T 2iwa_A 84 -----------------------------------------LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYG 121 (266)
T ss_dssp -----------------------------------------TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEE
T ss_pred -----------------------------------------cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEE
Confidence 2356889998 7643 344322 1223457889999886
Q ss_pred EeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
+. . .+.++++|.++.+ .+.+..... ..|. .....+.|. || .++..
T Consensus 122 s~-g------------s~~l~viD~~t~~v~~~I~Vg~~--~~p~------~~~nele~~-dg-~lyvn----------- 167 (266)
T 2iwa_A 122 SD-G------------TSILYEIDPHTFKLIKKHNVKYN--GHRV------IRLNELEYI-NG-EVWAN----------- 167 (266)
T ss_dssp EC-S------------SSEEEEECTTTCCEEEEEECEET--TEEC------CCEEEEEEE-TT-EEEEE-----------
T ss_pred EC-C------------CCeEEEEECCCCcEEEEEEECCC--Cccc------ccceeEEEE-CC-EEEEe-----------
Confidence 53 2 2489999988644 333332110 0111 122356677 66 34331
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeec-------------cccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLD-------------LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~-------------~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
....+.|.++|. .++.....+.-.. ....+++|+||+++++.+.... .+|+.+++..
T Consensus 168 -~~~~~~V~vID~--~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 168 -IWQTDCIARISA--KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp -ETTSSEEEEEET--TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred -cCCCCeEEEEEC--CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 134568999995 3333334443211 1225789999999877764332 4688887655
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0014 Score=71.01 Aligned_cols=143 Identities=9% Similarity=0.046 Sum_probs=76.6
Q ss_pred eEEEEEcCCeeeecCC-------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCC
Q 002164 315 QLVLVSLDGTVKEIGP-------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLP 385 (958)
Q Consensus 315 ~l~~~~~~g~~~~l~~-------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~ 385 (958)
.|+.++ +|+...+.. . ..+..++++|||+ |++...... ......|.+||+++++ .+.+.. +
T Consensus 43 ~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~-------~~~~~~i~~~d~~tg~~~~~~~~-~ 112 (343)
T 2qe8_A 43 QVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQ-------SKSVPKLVAWDTLNNQLSRVIYL-P 112 (343)
T ss_dssp SEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHH-------HTSCCEEEEEETTTTEEEEEEEC-C
T ss_pred EEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCC-------cCCCCeEEEEECCCCeEEEEEEC-C
Confidence 466666 665543321 1 3456788999987 444432200 0012389999998766 344322 1
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-----------
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL----------- 454 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~----------- 454 (958)
.....+ ......++++|++..+++ ++... .....|++++. .+++...+...
T Consensus 113 ~~~~~~------~~~~~~v~vd~~~g~~yv-td~~~--------~~~~~i~v~d~---~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 113 PPITLS------NSFVNDLAVDLIHNFVYI-SDPAP--------DDKAALIRVDL---QTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp TTTSCT------TCCCCEEEEETTTTEEEE-EECCS--------GGGCEEEEEET---TTCCEEEECTTCTTTSCCSCCC
T ss_pred hhhccc------ccccceEEEecCCCEEEE-EcCcc--------CCCCeEEEEEC---CCCCEEEEecCCCcccccccce
Confidence 110001 123467899987665555 32210 02346777774 33332222100
Q ss_pred -------------------ccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 455 -------------------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 455 -------------------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
.....+++|||||+.|++..... .+||.++.
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~---~~l~~~~~ 224 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS---TSMYRIKS 224 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---SEEEEEEH
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---CeEEEEEH
Confidence 01135689999999998875433 47999875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0005 Score=70.57 Aligned_cols=181 Identities=9% Similarity=-0.026 Sum_probs=99.7
Q ss_pred cceEEEEEc-CCeeee-cCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCcccc
Q 002164 313 TTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~ 389 (958)
.+.|..+|+ +|+... +.-+.......++++|++|+..... .+.++++|.++.+. ..+...
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------------~~~v~viD~~t~~v~~~i~~g----- 105 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------------KNIGFIYDRRTLSNIKNFTHQ----- 105 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------------CSEEEEEETTTTEEEEEEECC-----
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------------CCEEEEEECCCCcEEEEEECC-----
Confidence 467999999 886443 2212111222345567888877633 35899999986543 333221
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc-----ccCceeee
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-----RYGGISWC 464 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-----~~~~~~~s 464 (958)
.......++||++++.. ...+.|+++|. ...+....+.-... ....+.|.
T Consensus 106 ----------~~~g~glt~Dg~~l~vs-------------~gs~~l~viD~--~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 106 ----------MKDGWGLATDGKILYGS-------------DGTSILYEIDP--HTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp ----------SSSCCEEEECSSSEEEE-------------CSSSEEEEECT--TTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ----------CCCeEEEEECCCEEEEE-------------CCCCeEEEEEC--CCCcEEEEEEECCCCcccccceeEEEE
Confidence 01245588899998873 23567999985 22233444432211 23356777
Q ss_pred cCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC---c---cccCCCCCC-ceEeccCCceEEEEeeeccCCCcE
Q 002164 465 DDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS---E---DVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTY 537 (958)
Q Consensus 465 pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~-~~~~spdG~~l~~~~~~~~~~~~~ 537 (958)
|| .|+...+.. ..|.++|+.++.. ....+... . ........| -++|+|+|++++...+
T Consensus 161 -dg-~lyvn~~~~---~~V~vID~~tg~V--~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-------- 225 (266)
T 2iwa_A 161 -NG-EVWANIWQT---DCIARISAKDGTL--LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-------- 225 (266)
T ss_dssp -TT-EEEEEETTS---SEEEEEETTTCCE--EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--------
T ss_pred -CC-EEEEecCCC---CeEEEEECCCCcE--EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--------
Confidence 66 555443333 4799999998632 22222110 0 000000000 1789999988776652
Q ss_pred EEEccCCCCCCCCCCeEEEEECCCC
Q 002164 538 ILLNGNGATPEGNIPFLDLFDINTG 562 (958)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~dl~~g 562 (958)
..+.|+++++...
T Consensus 226 ------------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 ------------LWPKLFEIKLHLV 238 (266)
T ss_dssp ------------TCSEEEEEEEEEC
T ss_pred ------------CCCeEEEEEEecc
Confidence 2457888887543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0035 Score=65.84 Aligned_cols=193 Identities=13% Similarity=0.061 Sum_probs=107.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
......+++||+ |+++. .+...|++++.+ |+.+.+...... .....+++.++|++.+...
T Consensus 63 ~~~~i~~~~~g~-l~v~~--------~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~------- 122 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTE--------NGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNGDIWFTQL------- 122 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTTCEEEEET-------
T ss_pred cceeEEECCCCC-EEEEe--------cCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCCCEEEEcc-------
Confidence 466778899986 44432 124579999988 555443321111 1155778888887544320
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeec--CCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI--GPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l--~~~-~~~~~~~~SpDGk~l 346 (958)
....|++++.+|+...+ ... .....+++++||+ |
T Consensus 123 ------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 123 ------------------------------------------NGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred ------------------------------------------CCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-E
Confidence 12357777775544433 212 4566788999998 5
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
++.... .+.|++++.++. ...+.. +.. ...+..+.+++||+ +++. .
T Consensus 160 ~v~~~~------------~~~i~~~~~~g~-~~~~~~-~~~----------~~~~~~i~~d~~g~-l~v~-~-------- 205 (300)
T 2qc5_A 160 WFTENQ------------NNSIGRITNTGK-LEEYPL-PTN----------AAAPVGITSGNDGA-LWFV-E-------- 205 (300)
T ss_dssp EEEETT------------TTEEEEECTTCC-EEEEEC-SST----------TCCEEEEEECTTSS-EEEE-E--------
T ss_pred EEEecC------------CCeEEEECCCCc-EEEeeC-CCC----------CCCcceEEECCCCC-EEEE-c--------
Confidence 555422 237888888543 333221 110 02346788899884 4442 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...+.|++++. + ++...... .......++++++|+ |+++.... ..|+++++++
T Consensus 206 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~---~~i~~~~~~g 260 (300)
T 2qc5_A 206 ---IMGNKIGRITT---T-GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGA---NQIGRITNDN 260 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTT---TEEEEECTTS
T ss_pred ---cCCCEEEEEcC---C-CcEEEEECCCCCCCceEEEECCCCC-EEEeccCC---CeEEEECCCC
Confidence 12346888873 3 33333321 122345678899987 55543222 4688998843
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0039 Score=73.16 Aligned_cols=222 Identities=9% Similarity=0.002 Sum_probs=136.2
Q ss_pred cceEEEEEc-CCeeee-cC-CC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccc
Q 002164 313 TTQLVLVSL-DGTVKE-IG-PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~-l~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~ 388 (958)
...|..+++ +..... +. .+ .....++|++++..|+++... .+.|+.++++|+..+.+.....
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------------~~~I~r~~~~g~~~~~v~~~g~-- 79 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------------LKTISRAFMNGSALEHVVEFGL-- 79 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC--
T ss_pred CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------------CCeEEEEECCCCCcEEEEeCCC--
Confidence 356889999 433322 21 12 456678999999999888633 3488899998766555443211
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecCC
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDS 467 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg 467 (958)
..+.++++.+.+..|++. + ...+.|.+.++ +|+..+.+... -.....++..|..
T Consensus 80 ----------~~P~GlAvD~~~~~LY~t-D-----------~~~~~I~v~~~---dG~~~~~l~~~~l~~P~~iavdp~~ 134 (628)
T 4a0p_A 80 ----------DYPEGMAVDWLGKNLYWA-D-----------TGTNRIEVSKL---DGQHRQVLVWKDLDSPRALALDPAE 134 (628)
T ss_dssp ----------SCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSTTCEEEECSSCCCEEEEEEETTT
T ss_pred ----------CCcceEEEEeCCCEEEEE-E-----------CCCCEEEEEec---CCCcEEEEEeCCCCCcccEEEccCC
Confidence 234578888888877663 2 23467889885 77666666432 2234568899988
Q ss_pred ceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (958)
..|+++.+.. ..+|+++++++. ....+.+. .....+ ++++++++.|++...
T Consensus 135 G~lY~tD~g~--~~~I~r~~~dG~--~~~~l~~~-~~~P~G------lalD~~~~~LY~aD~------------------ 185 (628)
T 4a0p_A 135 GFMYWTEWGG--KPKIDRAAMDGS--ERTTLVPN-VGRANG------LTIDYAKRRLYWTDL------------------ 185 (628)
T ss_dssp TEEEEEECSS--SCEEEEEETTSC--SCEEEECS-CSSEEE------EEEETTTTEEEEEET------------------
T ss_pred CeEEEeCCCC--CCEEEEEeCCCC--ceEEEECC-CCCcce------EEEccccCEEEEEEC------------------
Confidence 8898886543 368999999985 33444321 111111 678888888887752
Q ss_pred CCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002164 548 EGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (958)
Q Consensus 548 ~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~ 621 (958)
....|+.+|++++..+.+.. ... ....++.++..++++.. ....|++++..+|+.
T Consensus 186 --~~~~I~~~d~dG~~~~v~~~-~l~-------------~P~glav~~~~ly~tD~---~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 186 --DTNLIESSNMLGLNREVIAD-DLP-------------HPFGLTQYQDYIYWTDW---SRRSIERANKTSGQN 240 (628)
T ss_dssp --TTTEEEEEETTSCSCEEEEE-CCS-------------CEEEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred --CCCEEEEEcCCCCceEEeec-cCC-------------CceEEEEECCEEEEecC---CCCEEEEEECCCCCc
Confidence 12368999998766543322 111 01223444556665542 345688888766653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0019 Score=69.95 Aligned_cols=153 Identities=12% Similarity=0.032 Sum_probs=81.7
Q ss_pred cceEEEEEc-CCe-eeecCCC-------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc
Q 002164 313 TTQLVLVSL-DGT-VKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (958)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~ 383 (958)
..+|+++|+ +|+ .+.+.-+ .....++++|++..++++..... ....|.+||++++...++..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---------~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---------DKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---------GGCEEEEEETTTCCEEEECT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---------CCCeEEEEECCCCCEEEEec
Confidence 356999998 786 3333211 23467789988777776643100 12489999998655444322
Q ss_pred C-Ccccc--Ccccccc--------------cccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC
Q 002164 384 L-PLAED--IPIAFNS--------------VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446 (958)
Q Consensus 384 ~-~~~~~--~p~~~~~--------------~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 446 (958)
. +.... .....++ ...+...++|||||+.|++. + .....+|.++.+.+..+
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~-~-----------~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS-P-----------MHSTSMYRIKSADLSNL 230 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE-E-----------SSCSEEEEEEHHHHTCT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE-e-----------CCCCeEEEEEHHHhcCC
Confidence 1 11000 0000111 01245679999999988774 1 12347888873111111
Q ss_pred Cc--------eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 447 GP--------EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 447 ~~--------~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
.. ...........++++++||+ |+++...+ ..|++++..+
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~---~~V~~~d~~~ 278 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAH---SAIGVITSAD 278 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGG---TEEEEEETTT
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCC---CeEEEEECCC
Confidence 10 01112223456789999985 55543332 4688999833
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0016 Score=66.39 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=116.2
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
+.|.+.. ...+..+|.||++.|+.+.+ +...|+.+++++...+++.-..... .+.+++.++|.+++
T Consensus 20 ~~l~g~~--~~lSGla~~~~~~~L~aV~d--------~~~~I~~ld~~g~v~~~i~l~g~~D----~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 20 KEIAGIT--NNISSLTWSAQSNTLFSTIN--------KPAAIVEMTTNGDLIRTIPLDFVKD----LETIEYIGDNQFVI 85 (255)
T ss_dssp EECTTCC--SCEEEEEEETTTTEEEEEEE--------TTEEEEEEETTCCEEEEEECSSCSS----EEEEEECSTTEEEE
T ss_pred eECCCcc--cCcceeEEeCCCCEEEEEEC--------CCCeEEEEeCCCCEEEEEecCCCCC----hHHeEEeCCCEEEE
Confidence 4454443 35888999999988887664 3678999999854444442221111 56888999997444
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCe---eeec------
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGT---VKEI------ 328 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~---~~~l------ 328 (958)
.. + +..+|+++++ .+. ...+
T Consensus 86 s~-----------------------E--------------------------~~~~l~~~~v~~~~~i~~~~~~~~~~~~ 116 (255)
T 3qqz_A 86 SD-----------------------E--------------------------RDYAIYVISLTPNSEVKILKKIKIPLQE 116 (255)
T ss_dssp EE-----------------------T--------------------------TTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred EE-----------------------C--------------------------CCCcEEEEEcCCCCeeeeeeeecccccc
Confidence 22 0 1233555554 221 1111
Q ss_pred CC-CccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEe--ccCceEEEeccCCccccCcccccccccCcceee
Q 002164 329 GP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT--TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (958)
Q Consensus 329 ~~-~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d--~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (958)
.. ..++..++|+|++++|++...+.+ ..++.++ +.+...+.+......... ......+++
T Consensus 117 ~~~N~g~EGLA~d~~~~~L~va~E~~p-----------~~i~~~~g~~~~~~l~i~~~~~~~~~~------~~~d~S~l~ 179 (255)
T 3qqz_A 117 SPTNCGFEGLAYSRQDHTFWFFKEKNP-----------IEVYKVNGLLSSNELHISKDKALQRQF------TLDDVSGAE 179 (255)
T ss_dssp CCCSSCCEEEEEETTTTEEEEEEESSS-----------EEEEEEESTTCSSCCEEEECHHHHHTC------CSSCCCEEE
T ss_pred ccccCCcceEEEeCCCCEEEEEECcCC-----------ceEEEEcccccCCceeeecchhhcccc------ccCCceeEE
Confidence 11 145678999999999998875532 2566665 112222221110000000 012357889
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeecc---------ccCceeeecCCceEEEEEec
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---------RYGGISWCDDSLALVYESWY 476 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~---------~~~~~~~spDg~~l~~~~~~ 476 (958)
+.|....+++.. .....|..+|. +|.....+.-..+ ...++++.++|+ |+..+ +
T Consensus 180 ~dp~tg~lliLS------------~~s~~L~~~d~---~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs-E 242 (255)
T 3qqz_A 180 FNQQKNTLLVLS------------HESRALQEVTL---VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS-E 242 (255)
T ss_dssp EETTTTEEEEEE------------TTTTEEEEECT---TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE-T
T ss_pred EcCCCCeEEEEE------------CCCCeEEEEcC---CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc-C
Confidence 999877777652 23456777874 5543333321111 235689999996 55553 3
Q ss_pred cccceEEEEEcCCC
Q 002164 477 KTRRTRTWVISPGS 490 (958)
Q Consensus 477 ~~~~~~l~~~~~~~ 490 (958)
. ..+|++...+
T Consensus 243 ~---n~~y~f~~~~ 253 (255)
T 3qqz_A 243 P---NRFYRFTPQS 253 (255)
T ss_dssp T---TEEEEEEC--
T ss_pred C---ceEEEEEecC
Confidence 3 2588886544
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.7e-05 Score=83.62 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcee---E
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFC---C 786 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~---a 786 (958)
+.|+.++.. +. ..........+|+.+.++. . ...+++.++||||||.+|..+|.+. |+++. .
T Consensus 49 ~~v~~~d~~---~~----~~~~~~~~~a~~~~~~i~~---~--~~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~ 116 (283)
T 3tjm_A 49 IPTYGLQCT---RA----APLDSIHSLAAYYIDCIRQ---V--QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 116 (283)
T ss_dssp SCEEEECCC---TT----SCCSCHHHHHHHHHHHHTT---T--CCSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCE
T ss_pred ceEEEEecC---CC----CCCCCHHHHHHHHHHHHHH---h--CCCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccce
Confidence 888885552 21 1112234555555444432 2 1125899999999999999999864 67788 8
Q ss_pred EEEeccC
Q 002164 787 GIARSGA 793 (958)
Q Consensus 787 ~v~~~~~ 793 (958)
++++++.
T Consensus 117 lvlid~~ 123 (283)
T 3tjm_A 117 LFLFDGS 123 (283)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 8888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.014 Score=61.08 Aligned_cols=193 Identities=16% Similarity=0.093 Sum_probs=106.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....+.+++||+ |+++. .....|++++.+ ++...+...... ..+..+++.++|++.+.. .
T Consensus 21 ~p~~i~~d~~g~-l~v~~--------~~~~~v~~~~~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~-~------ 80 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQ--------HKANKISSLDQS-GRIKEFEVPTPD---AKVMCLIVSSLGDIWFTE-N------ 80 (300)
T ss_dssp CEEEEEECTTSC-EEEEE--------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECTTSCEEEEE-T------
T ss_pred CcceeeECCCCC-EEEEc--------CCCCeEEEECCC-CceEEEECCCCC---CcceeEEECCCCCEEEEe-c------
Confidence 456678899987 44432 125688999988 665543221110 115577888998754432 0
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC--C-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~--~-~~~~~~~~SpDGk~l 346 (958)
....|++++.+|+.+.+.. . .....++++++|+.
T Consensus 81 ------------------------------------------~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l- 117 (300)
T 2qc5_A 81 ------------------------------------------GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDI- 117 (300)
T ss_dssp ------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCE-
T ss_pred ------------------------------------------CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCE-
Confidence 1234777776554443322 1 44567788899874
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++... .+.++.++.++ ..+.+.. +.. ...+..+.+++||+ +++. .
T Consensus 118 ~v~~~~------------~~~i~~~~~~g-~~~~~~~-~~~----------~~~~~~i~~d~~g~-l~v~-~-------- 163 (300)
T 2qc5_A 118 WFTQLN------------GDRIGKLTADG-TIYEYDL-PNK----------GSYPAFITLGSDNA-LWFT-E-------- 163 (300)
T ss_dssp EEEETT------------TTEEEEECTTS-CEEEEEC-SST----------TCCEEEEEECTTSS-EEEE-E--------
T ss_pred EEEccC------------CCeEEEECCCC-CEEEccC-CCC----------CCCceeEEECCCCC-EEEE-e--------
Confidence 444321 23788888873 3333221 100 02346788999998 4442 1
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEe--eccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...+.|++++. + ++...+.. .......+.++++|+ |+++.... ..|++++.++
T Consensus 164 ---~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~---~~i~~~~~~g 218 (300)
T 2qc5_A 164 ---NQNNSIGRITN---T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMG---NKIGRITTTG 218 (300)
T ss_dssp ---TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT---TEEEEECTTC
T ss_pred ---cCCCeEEEECC---C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCC---CEEEEEcCCC
Confidence 12456888873 3 33333321 122345678888885 55443322 3689998843
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0031 Score=70.55 Aligned_cols=136 Identities=7% Similarity=0.036 Sum_probs=80.0
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce--eeccCCCCcc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~--~~lt~~~~~~ 241 (958)
.|+.+++.. +..+.+.. .......++|++||++|+++... .+.....++.++.+++-. +.+.....
T Consensus 160 ~I~~id~~~----~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~----~~~~~~~v~~~~~~g~~~~~~~l~~~~~-- 227 (430)
T 3tc9_A 160 PTRLIDFEK----EYVSTVYS--GLSKVRTICWTHEADSMIITNDQ----NNNDRPNNYILTRESGFKVITELTKGQN-- 227 (430)
T ss_dssp EEEEEETTT----TEEEEEEC--CCSCEEEEEECTTSSEEEEEECC----SCTTSEEEEEEEGGGTSCSEEEEEECSS--
T ss_pred cEEEEECCC----CEEEEEec--CCCCcceEEEeCCCCEEEEEeCC----CCcccceEEEEeCCCceeeeeeeccCCC--
Confidence 566766633 33333321 22356788999999988776531 122234567777665432 22221111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+++.|++..|+++.. ...+|++++.
T Consensus 228 ----p~giavdp~~g~lyv~d~------------------------------------------------~~~~V~~~~~ 255 (430)
T 3tc9_A 228 ----CNGAETHPINGELYFNSW------------------------------------------------NAGQVFRYDF 255 (430)
T ss_dssp ----CCCEEECTTTCCEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ----ceEEEEeCCCCEEEEEEC------------------------------------------------CCCEEEEEEC
Confidence 347888995445665510 2346899998
Q ss_pred -CCeeeecC-CC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 322 -DGTVKEIG-PP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 322 -~g~~~~l~-~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
++....+. .. .....++|+|||++|++.... ...|+.++.++
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~------------~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN------------QHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT------------TTEEEEEEEET
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC------------CCEEEEEeCCc
Confidence 55543332 11 345678999999988887633 34788888774
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0011 Score=70.47 Aligned_cols=93 Identities=6% Similarity=0.045 Sum_probs=54.8
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceE---EEeccCCccccCcccccccccCcceeeeecCCCCceE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFV---RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
+|||++|+++... .+.|+++++++ +.. +.+... ..+..+++++||+ |++
T Consensus 175 s~dg~~lyv~d~~------------~~~I~~~~~~~~g~~~~~~~~~~~--------------~~P~gi~vd~dG~-l~v 227 (306)
T 2p4o_A 175 KRFGNFLYVSNTE------------KMLLLRIPVDSTDKPGEPEIFVEQ--------------TNIDDFAFDVEGN-LYG 227 (306)
T ss_dssp EEETTEEEEEETT------------TTEEEEEEBCTTSCBCCCEEEEES--------------CCCSSEEEBTTCC-EEE
T ss_pred CcCCCEEEEEeCC------------CCEEEEEEeCCCCCCCccEEEecc--------------CCCCCeEECCCCC-EEE
Confidence 8999999887633 34899999874 221 111110 2356789999995 433
Q ss_pred EEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec---cccCceeee---cCCceEEEEEe
Q 002164 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWC---DDSLALVYESW 475 (958)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~---~~~~~~~~s---pDg~~l~~~~~ 475 (958)
++ ...+.|++++. +| +...+.... .....++|+ ||++.|+.+..
T Consensus 228 -a~-----------~~~~~V~~~~~---~G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 228 -AT-----------HIYNSVVRIAP---DR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp -EC-----------BTTCCEEEECT---TC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred -Ee-----------CCCCeEEEECC---CC-CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 21 23456888873 43 333332111 223457888 88888877654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.006 Score=65.24 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=78.6
Q ss_pred EEEEEc-CCeeeecCCC------ccccccccCC-CCcEEEEEeecCCccc-----cccCCCCCceeEEEeccCceEEEec
Q 002164 316 LVLVSL-DGTVKEIGPP------AVYTSLDPSP-DEKYILISSIHRPYSF-----IVPCGRFPRQVGVWTTDGIFVRELC 382 (958)
Q Consensus 316 l~~~~~-~g~~~~l~~~------~~~~~~~~Sp-DGk~l~~~~~~~~~~~-----~~~~~~~~~~i~l~d~~~~~~~~l~ 382 (958)
|++++. +|..+.+... .....+++.| ||+ |+++........ ........+.++.++.+++..+.+.
T Consensus 103 i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 667776 5554444321 2245678999 885 555542210000 0000112357888988766655432
Q ss_pred cCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC---CceEEEeeccccC
Q 002164 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE---GPEILHKLDLRYG 459 (958)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~---~~~~l~~~~~~~~ 459 (958)
.. ......++|+|||+.|++. + ...+.|++++. ++. ..+.+....+ ..
T Consensus 182 ~~-------------~~~p~gia~~~dg~~lyv~-d-----------~~~~~I~~~~~---~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 182 KE-------------LHVPGGAEVSADSSFVLVA-E-----------FLSHQIVKYWL---EGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp EE-------------ESCCCEEEECTTSSEEEEE-E-----------GGGTEEEEEES---SSTTTTCEEEEEECSS-EE
T ss_pred cC-------------CccCcceEECCCCCEEEEE-e-----------CCCCeEEEEEC---CCCcCCccceEEeCCC-CC
Confidence 21 0234578999999987763 1 23457888885 332 2333332223 45
Q ss_pred ceeeecCCceEEEEEecc-------ccceEEEEEcCCC
Q 002164 460 GISWCDDSLALVYESWYK-------TRRTRTWVISPGS 490 (958)
Q Consensus 460 ~~~~spDg~~l~~~~~~~-------~~~~~l~~~~~~~ 490 (958)
.+++.++|+ |+.+.... .....|++++.++
T Consensus 233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred CeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC
Confidence 678899996 55544331 1125789998865
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0026 Score=68.08 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=48.8
Q ss_pred cceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc---eEEEeccCCcc
Q 002164 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLA 387 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~---~~~~l~~~~~~ 387 (958)
...|++++. +++.+.+... .....++|+|||++|+++... .+.|+++++++. ..+.+...+
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~------------~~~I~~~~~~~~~~~~~~~~~~~~-- 229 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL------------SHQIVKYWLEGPKKGTAEVLVKIP-- 229 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG------------GTEEEEEESSSTTTTCEEEEEECS--
T ss_pred CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC------------CCeEEEEECCCCcCCccceEEeCC--
Confidence 356999998 6766554333 344567999999998887633 237889988752 222222111
Q ss_pred ccCcccccccccCcceeeeecCCCCceE
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~ 415 (958)
. +..+.+++||+ |++
T Consensus 230 -----------g-P~gi~~d~~G~-l~v 244 (322)
T 2fp8_A 230 -----------N-PGNIKRNADGH-FWV 244 (322)
T ss_dssp -----------S-EEEEEECTTSC-EEE
T ss_pred -----------C-CCCeEECCCCC-EEE
Confidence 1 45788999996 444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0083 Score=67.01 Aligned_cols=158 Identities=8% Similarity=0.080 Sum_probs=95.7
Q ss_pred cccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 190 KLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 190 ~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
....++|+| ++..|+++.. ...|++++++++....+...... ...++|+++|+.|+++-.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~---------~~~I~~id~~~~~v~~~~~~~~~-----P~~ia~d~~G~~lyvad~~~~~- 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE---------QHPTRLIDFEKEYVSTVYSGLSK-----VRTICWTHEADSMIITNDQNNN- 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB---------TEEEEEEETTTTEEEEEECCCSC-----EEEEEECTTSSEEEEEECCSCT-
T ss_pred CCCEEEECCCCCCeEEEEeC---------CCcEEEEECCCCEEEEEecCCCC-----cceEEEeCCCCEEEEEeCCCCc-
Confidence 346678999 5667666542 17899999998877766542221 4578999999988877211000
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCee---eecCCCccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV---KEIGPPAVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~---~~l~~~~~~~~~~~SpDGk~ 345 (958)
....++.++.+|.. +.+........++++|++.+
T Consensus 203 -------------------------------------------~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 203 -------------------------------------------DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239 (430)
T ss_dssp -------------------------------------------TSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC
T ss_pred -------------------------------------------ccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE
Confidence 01124444443321 22222234567789996666
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+++... .+.|+.++.+++....+...+.. ..+..++|+|||++|++. +
T Consensus 240 lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~~-----------~~P~gia~~pdG~~lyv~-d------- 288 (430)
T 3tc9_A 240 LYFNSWN------------AGQVFRYDFTTQETTPLFTIQDS-----------GWEFHIQFHPSGNYAYIV-V------- 288 (430)
T ss_dssp EEEEETT------------TTEEEEEETTTTEEEEEEECSSS-----------SCCEEEEECTTSSEEEEE-E-------
T ss_pred EEEEECC------------CCEEEEEECCCCcEEEEEEcCCC-----------CcceeEEEcCCCCEEEEE-E-------
Confidence 7776532 34899999987766444322111 235689999999977763 1
Q ss_pred ccccccCCeEEEEeC
Q 002164 426 KVEVTPRDIIYTQQA 440 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~ 440 (958)
.....|++++.
T Consensus 289 ----~~~~~I~~~~~ 299 (430)
T 3tc9_A 289 ----VNQHYILRSDY 299 (430)
T ss_dssp ----TTTTEEEEEEE
T ss_pred ----CCCCEEEEEeC
Confidence 23456777764
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00027 Score=78.03 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=32.4
Q ss_pred CcEEEEEeChHHHHHHHHHHh--------------------------CCCceeEEEEeccCCC
Q 002164 759 SKIAVGGHSYGAFMTANLLAH--------------------------APHLFCCGIARSGAYN 795 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~--------------------------~p~~~~a~v~~~~~~~ 795 (958)
+++.|+||||||.++..++.. +|++++.+|+++++..
T Consensus 151 ~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i~tP~~ 213 (431)
T 2hih_A 151 HPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTIATPHN 213 (431)
T ss_dssp BCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEESCCTT
T ss_pred CCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEECCCCC
Confidence 689999999999999998876 6789999999987643
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00057 Score=74.30 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHh-------------------CC------CceeEEEEeccCCC
Q 002164 758 PSKIAVGGHSYGAFMTANLLAH-------------------AP------HLFCCGIARSGAYN 795 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~-------------------~p------~~~~a~v~~~~~~~ 795 (958)
.+++.|+||||||.++..++.+ +| ++++.+|.+++...
T Consensus 103 ~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~V~sLV~i~tP~~ 165 (387)
T 2dsn_A 103 GGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHD 165 (387)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCTT
T ss_pred CCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccceeEEEEECCCCC
Confidence 4689999999999999999872 35 68999999987543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.043 Score=55.74 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=72.5
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
..+..++|+||++.|+.+.+. +..|+.+|++++..+.+..... ....++++.+||.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~------------~~~I~~ld~~g~v~~~i~l~g~------------~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK------------PAAIVEMTTNGDLIRTIPLDFV------------KDLETIEYIGDNQ 82 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET------------TEEEEEEETTCCEEEEEECSSC------------SSEEEEEECSTTE
T ss_pred cCcceeEEeCCCCEEEEEECC------------CCeEEEEeCCCCEEEEEecCCC------------CChHHeEEeCCCE
Confidence 567788999999999888765 2378999998766666532110 1235678888875
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe---------eccccCceeeecCCceEEEEEeccccceE
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---------LDLRYGGISWCDDSLALVYESWYKTRRTR 482 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~---------~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (958)
+++ ++. ..+.++++++. ..+....+.. .+....+++|+|++++|+.+.+... ..
T Consensus 83 -~~v-s~E-----------~~~~l~~~~v~--~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p--~~ 145 (255)
T 3qqz_A 83 -FVI-SDE-----------RDYAIYVISLT--PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP--IE 145 (255)
T ss_dssp -EEE-EET-----------TTTEEEEEEEC--TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS--EE
T ss_pred -EEE-EEC-----------CCCcEEEEEcC--CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC--ce
Confidence 222 221 23467777651 2222122211 1223467999999999988776664 57
Q ss_pred EEEEc
Q 002164 483 TWVIS 487 (958)
Q Consensus 483 l~~~~ 487 (958)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99887
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.015 Score=58.75 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=90.9
Q ss_pred hcceEEEEEc-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccc
Q 002164 312 ATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~ 388 (958)
+.+.|..+|+ +|+.. .+.-+..+..-..+++|++|+...-. .+.++++|.++.+ ..++.. +
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------------~~~v~v~D~~t~~~~~ti~~-~--- 126 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------------NGLGFVWNIRNLRQVRSFNY-D--- 126 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------------SSEEEEEETTTCCEEEEEEC-S---
T ss_pred CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------------CCEEEEEECccCcEEEEEEC-C---
Confidence 3467999999 88543 33222222222345678888777532 3489999998544 333332 1
Q ss_pred cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee--ccccC---ceee
Q 002164 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYG---GISW 463 (958)
Q Consensus 389 ~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~---~~~~ 463 (958)
......++||+.|+.. ++.+.|+.+|. .+.+....+.-. ...+. .+.|
T Consensus 127 ------------~eG~glt~dg~~L~~S-------------dGs~~i~~iDp--~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 127 ------------GEGWGLTHNDQYLIMS-------------DGTPVLRFLDP--ESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp ------------SCCCCEEECSSCEEEC-------------CSSSEEEEECT--TTCSEEEEEECEETTEECCCEEEEEE
T ss_pred ------------CCceEEecCCCEEEEE-------------CCCCeEEEEcC--CCCeEEEEEEeccCCccccccceeEE
Confidence 1234577899887763 33567999985 333344444322 12222 3577
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC--ccc---cCCCCCC-ceEeccCCceEEEEe
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS--EDV---YSDPGSP-MMRRTSTGTYVIAKI 528 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~-~~~~spdG~~l~~~~ 528 (958)
. || .|+...+.. ..|.+||+.++. .....+... ... ......+ -++|+|+++.|+...
T Consensus 180 ~-~G-~lyan~w~~---~~I~vIDp~tG~--V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 180 V-DG-EIFANVWQT---NKIVRIDPETGK--VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp E-TT-EEEEEETTS---SEEEEECTTTCB--EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred E-CC-EEEEEEccC---CeEEEEECCCCc--EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6 66 465554444 369999999863 332222210 000 0000011 167888888776665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.12 Score=55.72 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=77.0
Q ss_pred ceEEEEEcCCeeeecC------CC-ccccccccCCC---CcEEEEEeec-CCccccccCCCCCceeEEEeccCc-----e
Q 002164 314 TQLVLVSLDGTVKEIG------PP-AVYTSLDPSPD---EKYILISSIH-RPYSFIVPCGRFPRQVGVWTTDGI-----F 377 (958)
Q Consensus 314 ~~l~~~~~~g~~~~l~------~~-~~~~~~~~SpD---Gk~l~~~~~~-~~~~~~~~~~~~~~~i~l~d~~~~-----~ 377 (958)
..|++++.+|+ +.+. .. .....++++|| +.+|++.... ... ......|..++.+++ .
T Consensus 49 g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~------~~~~~~v~r~~~~~~~~~~~~ 121 (354)
T 3a9g_A 49 GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG------GHIRNRVIRGRLDGSTFKLKE 121 (354)
T ss_dssp TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG------GCEEEEEEEEEECSSSCCEEE
T ss_pred CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC------CCcceEEEEEEECCCCcCcCc
Confidence 34677755554 3221 12 44567889998 6677665432 100 000136777777654 1
Q ss_pred EEEe-ccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc---ccccCCeEEEEeCCCCCCC-------
Q 002164 378 VREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV---EVTPRDIIYTQQAEPVQGE------- 446 (958)
Q Consensus 378 ~~~l-~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~g~------- 446 (958)
.+.| ...+.. .......+.|.|||+ |++. . .+.+.... .....+.|++++. +|.
T Consensus 122 ~~~l~~~~~~~---------~~h~~~~l~~~pDG~-Lyvt-~-G~~~~~~~~~d~~~~~G~I~ri~~---dG~~p~~npf 186 (354)
T 3a9g_A 122 VKTLIDGIPGA---------YIHNGGRIRFGPDGM-LYIT-T-GDAADPRLAQDLSSLAGKILRVDE---EGRPPADNPF 186 (354)
T ss_dssp EEEEEEEEECC---------SSCCCCCEEECTTSC-EEEE-C-CCTTCGGGGTCTTCCSSEEEEECT---TSCCCTTSSS
T ss_pred cEEEEEcCCCC---------CCcCCceEEECCCCc-EEEE-E-CCCCCCccccCCCCCCeEEEEEcC---CCCCCCCCCC
Confidence 2222 212210 012346799999995 5553 1 12211110 0123457888885 554
Q ss_pred -CceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 447 -GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 447 -~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
..+.+...-.....++|+|+...|+++........+|.++..
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 233444333445678999955556665433322345666654
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0088 Score=60.32 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=84.1
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCccc-CCcccCCCCCCCCcC---cHHHHHHHHCCcEE
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA-AGQVRGSPNEFPRIG---STSVLLWLARGFAI 715 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~la~~G~~v 715 (958)
-.+.+....|..+..|++.... ++. ..|++|+++|||.++... +.....+|-....-+ ......|.+. ..+
T Consensus 22 Gy~~v~~~~~~~lFywf~es~~-~~~---~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~~-anv 96 (255)
T 1whs_A 22 GYITVDEGAGRSLFYLLQEAPE-DAQ---PAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKV-ANV 96 (255)
T ss_dssp EEEEEETTTTEEEEEEEECCCG-GGC---SCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGGT-SEE
T ss_pred EEEECCCCCCcEEEEEEEEecC-CCC---CCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccccc-CCE
Confidence 3566665567888888775432 222 379999999999887654 222222222211000 0000012222 445
Q ss_pred EEcCCCCCCCCCCcccchh----hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC-----C-Cce
Q 002164 716 LGGPTTPIIGEGDEEANDR----FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHA-----P-HLF 784 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----p-~~~ 784 (958)
|.+|..-..|+........ -.....+|+..+++...+ .+.....++.|+|.||||..+-.+|..- + =-+
T Consensus 97 lfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inL 176 (255)
T 1whs_A 97 LFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINL 176 (255)
T ss_dssp EEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEE
T ss_pred EEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccccc
Confidence 5544322334332222111 234556677666664444 4455557899999999999988777531 1 247
Q ss_pred eEEEEeccCCC
Q 002164 785 CCGIARSGAYN 795 (958)
Q Consensus 785 ~a~v~~~~~~~ 795 (958)
+++++.+|..|
T Consensus 177 kGi~ign~~~d 187 (255)
T 1whs_A 177 KGFMVGNGLID 187 (255)
T ss_dssp EEEEEEEECCB
T ss_pred ceEEecCCccC
Confidence 88998888765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.019 Score=58.08 Aligned_cols=194 Identities=11% Similarity=0.129 Sum_probs=108.5
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
....|+ || .|+.+.. ..+...|.++|+++|+..+-...+.. .-.-..+++|+.|+.+.-
T Consensus 46 qGL~~~-~~-~LyestG------~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~FgeGit~~g~~ly~ltw-------- 104 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTG------LNGRSSIRKVDIESGKTLQQIELGKR-----YFGEGISDWKDKIVGLTW-------- 104 (262)
T ss_dssp EEEEEE-TT-EEEEEEE------ETTEEEEEEECTTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEES--------
T ss_pred ceEEEE-CC-EEEEECC------CCCCceEEEEECCCCcEEEEEecCCc-----cceeEEEEeCCEEEEEEe--------
Confidence 456787 55 5555442 23467899999999987654443332 112224556777776610
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILIS 349 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~ 349 (958)
....++++|. +++ ...+.-+. ....+++||++|+.+
T Consensus 105 ----------------------------------------~~~~v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~S 142 (262)
T 3nol_A 105 ----------------------------------------KNGLGFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMS 142 (262)
T ss_dssp ----------------------------------------SSSEEEEEETTTCCEEEEEECSS--CCCCEEECSSCEEEC
T ss_pred ----------------------------------------eCCEEEEEECccCcEEEEEECCC--CceEEecCCCEEEEE
Confidence 2356999998 764 33443321 335667899988776
Q ss_pred eecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
. . ..+|+++|.++.+ .+.+.... ...|. .....+.|. ||+ |+..
T Consensus 143 d-G------------s~~i~~iDp~T~~v~~~I~V~~--~g~~~------~~lNELe~~-~G~-lyan------------ 187 (262)
T 3nol_A 143 D-G------------TPVLRFLDPESLTPVRTITVTA--HGEEL------PELNELEWV-DGE-IFAN------------ 187 (262)
T ss_dssp C-S------------SSEEEEECTTTCSEEEEEECEE--TTEEC------CCEEEEEEE-TTE-EEEE------------
T ss_pred C-C------------CCeEEEEcCCCCeEEEEEEecc--CCccc------cccceeEEE-CCE-EEEE------------
Confidence 4 2 2379999988543 33333211 11111 112235676 664 3331
Q ss_pred cccCCeEEEEeCCCCCCCCceEEEeec------------cccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPEILHKLD------------LRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~------------~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
....+.|.++|. .+|.....+.... .-..+++|+|+++.|+.+... ..++|.+.+
T Consensus 188 ~w~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~---Wp~~~ev~~ 254 (262)
T 3nol_A 188 VWQTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL---WPKVFEITL 254 (262)
T ss_dssp ETTSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT---CSEEEEEEE
T ss_pred EccCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC---CCceEEEEE
Confidence 234668899985 3443334443210 112569999999988877522 245666543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.029 Score=60.71 Aligned_cols=249 Identities=12% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC-
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~- 186 (958)
......++|+|||+ |.++... +.|++++ + +....+..++
T Consensus 30 l~~P~~ia~~pdG~-l~V~e~~---------------------------------g~I~~i~--~----g~~~~~~~~~v 69 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAERP---------------------------------GRIRLFR--E----GRLSTYAELSV 69 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEETT---------------------------------TEEEEEE--T----TEEEEEEECCC
T ss_pred CCCceEEEEcCCCe-EEEEeCC---------------------------------CeEEEEE--C----CCccEeecceE
Q ss_pred ---CCCcccceeecCC---CCeEEEEEeeccccCCCCC---ceEEEEEcCCC---ceeeccCCCC--ccccccccceEEe
Q 002164 187 ---DGAKLNFVTWSQD---GKHLAFSIRIDAEDSSSSK---LRVWVADVDTG---KARPLFQSPD--IYLNAIFDNFVWV 252 (958)
Q Consensus 187 ---~~~~~~~~~wSPD---G~~iaf~~~~~~~~~~~~~---~~l~~~~~~~g---~~~~lt~~~~--~~~~~~~~~~~ws 252 (958)
........+|+|| +.+|+++.. .... ..|++++.+++ +.+.+...-. .........++|.
T Consensus 70 ~~~g~~~p~gia~~pdf~~~g~lYv~~~------~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~ 143 (352)
T 2ism_A 70 YHRGESGLLGLALHPRFPQEPYVYAYRT------VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG 143 (352)
T ss_dssp CCSTTCSEEEEEECTTTTTSCEEEEEEE------ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC
T ss_pred eecCCCCceeEEECCCCCCCCEEEEEEe------cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhc--------------ceEEE
Q 002164 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT--------------TQLVL 318 (958)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~--------------~~l~~ 318 (958)
|||.+.+.. +. ..|++
T Consensus 144 pdG~Lyv~~--------------------------------------------------G~~~~~~~~~d~~~~~g~I~r 173 (352)
T 2ism_A 144 PDGMLYVTT--------------------------------------------------GEVYERELAQDLASLGGKILR 173 (352)
T ss_dssp TTSCEEEEC--------------------------------------------------CCTTCGGGGGCTTCSSSEEEE
T ss_pred CCCCEEEEE--------------------------------------------------CCCCCCccccCCCCCceEEEE
Q ss_pred EEcCC--------------eeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc
Q 002164 319 VSLDG--------------TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (958)
Q Consensus 319 ~~~~g--------------~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~ 383 (958)
++.+| ..+.+..+ .....++|+|+...|+++... .-.+.+....+...+..
T Consensus 174 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g--------------~~~~~~~~~dei~~i~~ 239 (352)
T 2ism_A 174 LTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG--------------PSGEQGYGHDEVNLIVP 239 (352)
T ss_dssp ECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC--------------C------CCCEEEEECT
T ss_pred EcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC--------------CCCCCCCCCeEEEEecc
Q ss_pred CCccc-------------cCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC---
Q 002164 384 LPLAE-------------DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--- 447 (958)
Q Consensus 384 ~~~~~-------------~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~--- 447 (958)
..... ..|...-.....+..++| .+|+.++.. .....|+++++ ++..
T Consensus 240 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~-------------~~~~~v~~v~~---~~~~~~~ 302 (352)
T 2ism_A 240 GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAG-------------LRGQALLRLVL---EGERGRW 302 (352)
T ss_dssp TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEE-------------TTTTEEEEEEE---EEETTEE
T ss_pred CCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEE-------------CCCCEEEEEEE---CCCCcce
Q ss_pred ----ceEEEeeccccCceeeecCCceEEEEEeccccce---------EEEEE
Q 002164 448 ----PEILHKLDLRYGGISWCDDSLALVYESWYKTRRT---------RTWVI 486 (958)
Q Consensus 448 ----~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~---------~l~~~ 486 (958)
...+.....+...+++.||| .|+++.+... . +||++
T Consensus 303 ~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~~~~--g~g~~~~~~~~i~ri 351 (352)
T 2ism_A 303 RVLRVETALSGFGRLREVQVGPDG-ALYVTTSNRD--GRGQVRPGDDRVLRL 351 (352)
T ss_dssp EEEEEEEEEESSCCEEEEEECTTS-CEEEEECSTT--TTSCCCTTCSCEEEE
T ss_pred eecchheecccCCCeeEEEECCCC-cEEEEEeCCC--CCCCCCCCCCEEEEe
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.019 Score=62.51 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=52.7
Q ss_pred hcceEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE---EEeccCCcc
Q 002164 312 ATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLA 387 (958)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~---~~l~~~~~~ 387 (958)
..+.|+++++ ++....+. ..+..++|||+| +++... ++++.+|+.++++. +.|...+..
T Consensus 144 ~dG~L~v~dl~~~~~~~~~--~~Vs~v~WSpkG--~~vg~~-------------dg~i~~~~~~~~~~~~k~~I~~Pp~~ 206 (388)
T 1xip_A 144 SVNDLSALDLRTKSTKQLA--QNVTSFDVTNSQ--LAVLLK-------------DRSFQSFAWRNGEMEKQFEFSLPSEL 206 (388)
T ss_dssp TTSEEEEEETTTCCEEEEE--ESEEEEEECSSE--EEEEET-------------TSCEEEEEEETTEEEEEEEECCCHHH
T ss_pred CCCCEEEEEccCCcccccc--CCceEEEEcCCc--eEEEEc-------------CCcEEEEcCCCccccccceecCCccc
Confidence 3467999999 67655543 468899999999 444432 24788999888774 344221110
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEE
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
+.. ......+.++.|.++++.++...
T Consensus 207 ~~~----~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 207 EEL----PVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp HTS----CTTTSEEEEEEESSSSEEEEEEE
T ss_pred ccc----cCCCeeEEEEEEecCCeEEEEEc
Confidence 000 00113457899999998877653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.033 Score=62.33 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=96.5
Q ss_pred ccceeecC-CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEE-------ecCCeEEEEEe
Q 002164 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW-------VNNSTLLVCTI 262 (958)
Q Consensus 191 ~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~w-------spDG~~l~~~~ 262 (958)
....+++| ++..|+++.+ ....|+++|++++....+.......++ ....++| +++|+.|+++.
T Consensus 141 p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~~~~~v~~l~~~~~~~~~-~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYD--------GHKAIQLIDLKNRMLSSPLNINTIPTN-RIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp EEEEEEETTEEEEEEEEEE--------TEEEEEEEETTTTEEEEEECCTTSSCS-BEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CCEEEEccCCCCEEEEEEC--------CCCeEEEEECCCCEEEEEEccCccccC-CCcEEEEeecccccCCCCCEEEEEe
Confidence 45678899 5667666543 245799999999888777554332211 1457889 99999888772
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc--CCee------eecCCCccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV------KEIGPPAVY 334 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~--~g~~------~~l~~~~~~ 334 (958)
..... . .....++.++. +|.. +.+......
T Consensus 212 ~~~~~---------------------~---------------------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p 249 (496)
T 3kya_A 212 DYDGK---------------------G---------------------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQC 249 (496)
T ss_dssp CCCTT---------------------G---------------------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCC
T ss_pred CCCCC---------------------c---------------------ccCceEEEEecCCCCceeecccceeeccCCCc
Confidence 11100 0 01123555544 2332 222211334
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEecc-------CceE------------EEeccCCccccCccccc
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-------GIFV------------RELCDLPLAEDIPIAFN 395 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~-------~~~~------------~~l~~~~~~~~~p~~~~ 395 (958)
..++.+|++++|+++... .+.|+.+|++ ++.. +.+...+
T Consensus 250 ~giavdp~~g~LYvtd~~------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~---------- 307 (496)
T 3kya_A 250 NGATIHPINGELYFNSYE------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA---------- 307 (496)
T ss_dssp CCEEECTTTCCEEEEETT------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS----------
T ss_pred eEEEEcCCCCeEEEEECC------------CCEEEEEecccccccccCceeecccccccccccceeEecC----------
Confidence 567889988888888743 3479999987 4432 1221111
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeC
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (958)
.......++|+|||+.|++. + .....|+.++.
T Consensus 308 -~~~~p~~ia~~p~G~~lYva-D-----------~~~h~I~kid~ 339 (496)
T 3kya_A 308 -DPSWEFQIFIHPTGKYAYFG-V-----------INNHYFMRSDY 339 (496)
T ss_dssp -SSSCCEEEEECTTSSEEEEE-E-----------TTTTEEEEEEE
T ss_pred -CCCCceEEEEcCCCCEEEEE-e-----------CCCCEEEEEec
Confidence 01234679999999976663 1 34557888764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.58 Score=55.33 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=18.2
Q ss_pred CCCeEEEEEeeccccCCCCCceEEEEEcCCCceee
Q 002164 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP 233 (958)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (958)
++.+|++.. ....|+.+|+++|+..-
T Consensus 127 ~~~~v~v~~---------~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 127 WKGKVYVGA---------WDGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEEC---------TTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEc---------CCCEEEEEECCCCCEEe
Confidence 456676643 25689999999888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 958 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 9e-20 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 8e-18 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 9e-18 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 4e-17 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 6e-14 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 4e-13 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-12 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 6e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 7e-12 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 8e-11 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 1e-10 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 2e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-10 | |
| d1pv1a_ | 299 | c.69.1.34 (A:) Hypothetical esterase YJL068C {Bake | 5e-10 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-09 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 1e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 2e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 7e-05 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 2e-04 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 3e-04 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 8e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 0.001 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 0.002 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 0.002 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 0.003 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 9e-20
Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 19/257 (7%)
Query: 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707
D L + P + + P L + +F S ++
Sbjct: 11 DDYNLPMQILKPATFTDTT--HYPLLLVVDGT--------PGSQSVAEKFE--VSWETVM 58
Query: 708 WLARGFAILGGPTTPIIGEGDE---EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
+ G ++ +G + E R AV +++ +++AV
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 765 GHSYGAFMTANLLAHAP----HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM 820
G YG +++ +L F CG A S + L F L + EM
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880
+ + + + + L A L I P ESH + +
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSS 238
Query: 881 ESIMHVLWETDRWLQKY 897
H+ + +
Sbjct: 239 SLKQHLYRSIINFFVEC 255
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 82.2 bits (201), Expect = 8e-18
Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 17/263 (6%)
Query: 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP 698
+ + + + + + LPP +D SK P L Y G + + F
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAG--------PCSQKADTVFR 52
Query: 699 RIGSTSVLLWLARGFA---ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGV 755
+ + L G + + N R V A + + G
Sbjct: 53 --LNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGF 110
Query: 756 AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFGFQNEDRTLWEA 813
+IA+ G SYG ++T+ +L +F CGIA + + + + E
Sbjct: 111 VDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPED 170
Query: 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873
+ S MS + K + + + QS + AL G + + E
Sbjct: 171 NLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 230
Query: 874 SHGYAARESIMHVLWETDRWLQK 896
HG A+ + H+ ++++
Sbjct: 231 DHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 82.0 bits (201), Expect = 9e-18
Identities = 30/258 (11%), Positives = 57/258 (22%), Gaps = 22/258 (8%)
Query: 640 ELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEF 697
+ DG +P P+ P L+ D + S
Sbjct: 14 SATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDRLDDELLKQLSEKTP 71
Query: 698 PRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQ--------LVACAEAAVEE 749
P I + L TP + + + +
Sbjct: 72 PVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPK 131
Query: 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRT 809
V + + + GHSYG + + + + S + R +
Sbjct: 132 VEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSY-YSASPSLGRGYDALLSRVTAVE 190
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869
+ + ++ + + E + + LK G
Sbjct: 191 PLQFCTKHLAIM-------EGSATQGDNRETHAV--GVLSKIHTTLTILKDKGVNAVFWD 241
Query: 870 LPFESHGYAARESIMHVL 887
P HG S L
Sbjct: 242 FPNLGHGPMFNASFRQAL 259
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 81.3 bits (199), Expect = 4e-17
Identities = 36/290 (12%), Positives = 76/290 (26%), Gaps = 34/290 (11%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFW--------SYPG 679
L +++ + + G ++ L +P ++ LPC+ +P
Sbjct: 45 RMESH-LKTVEAYDVTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPH 99
Query: 680 EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQL 739
++ + G + + + + + G + + ++
Sbjct: 100 DWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRV 159
Query: 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN---- 795
A AVE +I + G S G + + A + +
Sbjct: 160 FTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRA 219
Query: 796 RTLTPFGFQNEDR--------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847
L E T A + K P L G DN
Sbjct: 220 VQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNI--CP 277
Query: 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N G + I P+ +H + + ++L+K
Sbjct: 278 PSTVFAAYNYYAGP---KEIRIYPYNNHEGGGSFQAVEQV----KFLKKL 320
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.0 bits (172), Expect = 6e-14
Identities = 32/278 (11%), Positives = 65/278 (23%), Gaps = 32/278 (11%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
I Y KDG ++ + G DG P + Y G + +PN
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIKL--DGSHPAFLYGYGG--------FNISITPNYSVS 57
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
+ A + G AA + +
Sbjct: 58 RLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKR 117
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIA------------RSGAYNRTLTPFGFQNED 807
GG + G + C G T +
Sbjct: 118 LTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQH 177
Query: 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL-------KG 860
S + + + +LL+ + D+ + S +F L +
Sbjct: 178 FEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRK 235
Query: 861 HGALCRLVILPFESHGYAARES-IMHVLWETDRWLQKY 897
+ + HG + ++ + + ++ +
Sbjct: 236 QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 68.3 bits (165), Expect = 4e-13
Identities = 37/253 (14%), Positives = 63/253 (24%), Gaps = 9/253 (3%)
Query: 627 FPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA 686
+ +P PQ + K Y +G S +YLP GYDP+K + + G
Sbjct: 17 YLNPCPQAGRIVK--ETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI 71
Query: 687 AGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA 746
N L L G E + + A
Sbjct: 72 FSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYA 131
Query: 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806
+ A GG + G T ++ + + SG Y +P N
Sbjct: 132 ESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANS 191
Query: 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866
+ +A + I + + F
Sbjct: 192 IAEAINRSGLSKREYFVFAATG-SEDIAYANMNPQIEA---MKALPHFDYTSDFSKGNFY 247
Query: 867 LVILPFESHGYAA 879
++ P +H +
Sbjct: 248 FLVAPGATHWWGY 260
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 42/291 (14%)
Query: 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAA 687
P YP ++ + Y+ +++ +P +GP P + +
Sbjct: 46 PVDYP-ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASYDGEI 99
Query: 688 GQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------GDEEANDRFVEQLV 740
++ + G L RG + G G + + + +
Sbjct: 100 HEMV----NWALHGYA-TFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVY 154
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798
A A+E + ++I V G S G +T A + N
Sbjct: 155 LDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAI 214
Query: 799 ------------TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846
+ F T +A T A+++K P+L+ G D T
Sbjct: 215 DVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKV--T 272
Query: 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
+N L+ L + + H Y E + ++
Sbjct: 273 PPSTVFAAYNHLETKK---ELKVYRYFGHEYIP-----AFQTEKLAFFKQI 315
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 64.9 bits (156), Expect = 6e-12
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 23/263 (8%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR 699
L+ + DG ++ + P P + + G S +
Sbjct: 13 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVLVHGG--------PFAEDSDSWDTF 60
Query: 700 IGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPS 759
L A ++ + + + R S
Sbjct: 61 A----ASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS 116
Query: 760 KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG-----AYNRTLTPFGFQNEDRTLWEAT 814
++ + G+SYG +MT L P LF G+A + ++ +
Sbjct: 117 ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSR 176
Query: 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFES 874
SP +++K+P+ L+H + D+ T R L G I+P
Sbjct: 177 EIMRSRSPINHVDRIKEPLALIHPQNDSR--TPLKPLLRLMGELLARGKTFEAHIIPDAG 234
Query: 875 HGYAARESIMHVLWETDRWLQKY 897
H E + +L +L
Sbjct: 235 HAINTMEDAVKILLPAVFFLATQ 257
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 65.5 bits (159), Expect = 7e-12
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 12/130 (9%)
Query: 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------RTLTPFGFQNEDRT 809
P+ ++V G + G +M A L +F G T + T
Sbjct: 10 PNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITT 69
Query: 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRL 867
++ AN ++ I + G D ++ L + A
Sbjct: 70 PTANMKSWSGNQIASVANLGQRKIYMWTGSSDTT--VGPNVMNQLKAQLGNFDNSANVSY 127
Query: 868 VILPFESHGY 877
V H +
Sbjct: 128 VTTTGAVHTF 137
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 61.2 bits (147), Expect = 8e-11
Identities = 36/270 (13%), Positives = 65/270 (24%), Gaps = 30/270 (11%)
Query: 625 TDFPHPYPQLASLQKELIKYQ-RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKS 683
+ + + Q I Y A +YLPPGY K L+ +
Sbjct: 8 SGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSE 65
Query: 684 KDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACA 743
D + + P I +G E + L+
Sbjct: 66 NDWFEGGGRANVIADN-LIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYI 124
Query: 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGF 803
E+ A+ G S G + N+ F S A
Sbjct: 125 ES-----NYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP--------- 170
Query: 804 QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863
+ + +A + K + + G D+ G R +
Sbjct: 171 -------NTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNI 219
Query: 864 LCRLVILPFESHGYAA-RESIMHVLWETDR 892
++ H + + + + L D
Sbjct: 220 NHVYWLIQGGGHDFNVWKPGLWNFLQMADE 249
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 60.3 bits (145), Expect = 1e-10
Identities = 32/273 (11%), Positives = 62/273 (22%), Gaps = 38/273 (13%)
Query: 623 QITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFK 682
P + + E +K R+ ++ P +
Sbjct: 6 DCPQAPEIPAKEIIWKSERLKNSRR------VWIFTTGDVTA---EERPLAVLLDGEFWA 56
Query: 683 SKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVAC 742
V S ++ +L + N F +
Sbjct: 57 QSMPVWPVLTSLTHRQQLPPAVY---------VLIDAIDTTHRAHELPCNADFWLAVQQE 107
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802
V+ + + V G S+G H P F C +++SG+Y
Sbjct: 108 LLPLVKVIAPFSDR-ADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-- 164
Query: 803 FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862
+ +E + I+L G + + + + L
Sbjct: 165 --------GQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPM---IMRANQALYAQLHPIK 213
Query: 863 ALCRLVILPFESHGYAA-RESIMHVLWETDRWL 894
+ H R +M L L
Sbjct: 214 ESIFWRQVD-GGHDALCWRGGLMQGL----IDL 241
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 61.7 bits (148), Expect = 2e-10
Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 23/205 (11%)
Query: 626 DFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKD 685
F K + +DGV+L + LP G P + P
Sbjct: 12 PFVAADAS-NDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTP----YDA 61
Query: 686 AAGQVRGSPNEFPRIGSTSVLLWLARGFAIL-------GGPTTPIIGEGDEEA-NDRFVE 737
+ R + + S +++ G+ + G + +
Sbjct: 62 SGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEV 121
Query: 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG----- 792
A ++ +V+ K+ + G SY F L + + S
Sbjct: 122 DHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGW 181
Query: 793 AYNRTLTPFGFQNEDRTLWEATSTY 817
+ F+ + + +
Sbjct: 182 MGDDWFNYGAFRQVNFDYFTGQLSK 206
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 61.7 bits (148), Expect = 2e-10
Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 16/175 (9%)
Query: 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQ 689
P Q K + +DGV+L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 690 VRGSPNEFPRIGSTSVLLWLARGFAIL--------GGPTTPIIGEGDEEANDRFVEQLVA 741
+ + +++ G+ + G ++ +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETT 130
Query: 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
A V+ +V ++ + G SY F L S +
Sbjct: 131 DAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDG 185
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (143), Expect = 5e-10
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 29/256 (11%)
Query: 649 GVQLSATLYLPPGY---DPSKDGPLPCLFW------------SYPGEFKSKDAAGQVRGS 693
++ +YLP Y D ++ +P +F+ D G
Sbjct: 25 KTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVF 84
Query: 694 PNEFPRIGSTSVLLWLARGFAILGG---PTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ PR + + F G T + D ++L ++ +
Sbjct: 85 PDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKN 144
Query: 751 VRRGVAHPSKIAVGGHS---YGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 807
+ +A+ GHS YGA L ++ + A + N + P+G +
Sbjct: 145 GDVKLDFLDNVAITGHSMGGYGAICGY-LKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFK 203
Query: 808 RTLWEATSTYVEMSPFMSANKLKKP----ILLVHGEEDNNSGTLTMQSDRFFNALK--GH 861
L E + + P + ++ IL+ G+ D ++ + A+K
Sbjct: 204 GYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH-LKPELLLEAVKATSW 262
Query: 862 GALCRLVILPFESHGY 877
+ + H Y
Sbjct: 263 QDYVEIKKVHGFDHSY 278
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 58.8 bits (141), Expect = 1e-09
Identities = 36/294 (12%), Positives = 71/294 (24%), Gaps = 63/294 (21%)
Query: 663 DPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL----- 716
+ + V +P F + S+ + RGFA +
Sbjct: 86 EEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGV 145
Query: 717 --GGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHP---SKIAVGGHSYG 769
++ ++ L A A + K+A+ G SY
Sbjct: 146 GTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYL 205
Query: 770 AFMTANLLAHAPHLFCCGIARSGAYNRT-------------------------------- 797
M +A +G +
Sbjct: 206 GTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265
Query: 798 --------------LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843
DR + + + + ++ +K+K +L+VHG +D N
Sbjct: 266 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWN 325
Query: 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897
Q+ F+ AL G + +H Y + + +
Sbjct: 326 VT--PEQAYNFWKALP-EGHAKHAFLHR-GAHIYMNSWQSIDFSETINAYFVAK 375
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 52.7 bits (125), Expect = 1e-07
Identities = 42/252 (16%), Positives = 68/252 (26%), Gaps = 41/252 (16%)
Query: 656 LYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715
+ +P G GP P + + E ++ + L L RG A
Sbjct: 122 VRIPEG-----PGPHPAVIMLGGL-----------ESTKEESFQMEN----LVLDRGMAT 161
Query: 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775
P GE E A V+ + + I V G S G
Sbjct: 162 AT-FDGPGQGEMFEYKRIA--GDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALK 218
Query: 776 LLAHAPHLFCCGIARSGAYN---------RTLTPFGFQNEDRTLWEA-TSTYVEMSPFMS 825
A P I+ G + T + + ++ TL EA + +
Sbjct: 219 SAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 277
Query: 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885
+++ P ++HG D D + LV+ H
Sbjct: 278 LSQIACPTYILHGVHDE---VPLSFVDTVLELVPAEHL--NLVVEKDGDHCCHNLGIRPR 332
Query: 886 VLWETDRWLQKY 897
+ E WL
Sbjct: 333 L--EMADWLYDV 342
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.0 bits (113), Expect = 2e-06
Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 34/258 (13%)
Query: 660 PGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-NEFPRIGSTSVLLWLARGFAILGG 718
S P L+ G D +G +P E+ SV++ + +
Sbjct: 24 KVQFQSGGANSPALYLLD-GLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD 82
Query: 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778
P G+ + + P+ AV G S A L
Sbjct: 83 WYQPACGKAGCQTYK----WETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAI 138
Query: 779 HAPHLFCCGIARSGAYNRTLTP------------FGFQNEDRTLWEATSTYVEMSPFMSA 826
+ P F A SG + + G++ D + + P ++
Sbjct: 139 YHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNV 198
Query: 827 NKLKK---PILLVHGEEDNNS------------GTLTMQSDRFFNALKGHGALCRLVILP 871
KL + + G + G + + +F +A G + P
Sbjct: 199 GKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFP 258
Query: 872 FE-SHGYAARESIMHVLW 888
+H + + ++ +
Sbjct: 259 DSGTHSWEYWGAQLNAMK 276
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 7e-05
Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 15/167 (8%)
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + + + + LA + P D + + + +
Sbjct: 37 NAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWL 96
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---------- 800
P A G + G + L A P F + SG + T
Sbjct: 97 AANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQ 156
Query: 801 --FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDN 842
G + P++ A+ L + + +
Sbjct: 157 QFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPG 203
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 20/150 (13%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL 706
+DGV+L+ LY P DGP+P L P ST+ L
Sbjct: 13 RDGVRLAVDLYRPDA-----DGPVPVLLVRNPY-----------DKFDVFAWSTQSTNWL 56
Query: 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGH 766
++ G+A++ G E A AE + ++ + + + G
Sbjct: 57 EFVRDGYAVV---IQDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCDG-NVGMFGV 112
Query: 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNR 796
SY + +
Sbjct: 113 SYLGVTQWQAAVSGVGGLKAIAPSMASADL 142
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 40/266 (15%), Positives = 64/266 (24%), Gaps = 51/266 (19%)
Query: 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711
+ +Y P L + + G F ST V
Sbjct: 68 IRVRVYQQ-------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVV------ 114
Query: 712 GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771
+ E V + E + PSKI VGG S G
Sbjct: 115 ---------SVDYRLAPEHKFPAAVYDCYDATKWVAENAEELRID-PSKIFVGGDSAGGN 164
Query: 772 MTANLLAHAPHLFCCGIARS---------------------GAYNRTLTPFGFQNEDRTL 810
+ A + A I G + + +E
Sbjct: 165 LAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFS 224
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
E S + + P L++ E D L + + F L+ G +V
Sbjct: 225 REEDKFNPLASVIFADLENLPPALIITAEYD----PLRDEGEVFGQMLRRAGVEASIVRY 280
Query: 871 PFESHGYAARESIMHVLWETDRWLQK 896
HG+ + VL + +
Sbjct: 281 RGVLHGFI---NYYPVLKAARDAINQ 303
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 33/252 (13%), Positives = 59/252 (23%), Gaps = 55/252 (21%)
Query: 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL-----FWSYPGEFKSK----DAAGQV 690
E I Q DG A + P P P + + + G
Sbjct: 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIFGVNAFMRETVSWLVDQGYA 57
Query: 691 RGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750
P+ + R + L + + +E V EAA+
Sbjct: 58 AVCPDLYARQAPGTA----------LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYA 107
Query: 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTL 810
+ + K+ + G+ G + + A
Sbjct: 108 RHQPYS-NGKVGLVGYCLGGALAFLVAAKGYVDRAV------------------------ 142
Query: 811 WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870
++K P L G +D+ S + G L ++
Sbjct: 143 --GYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV---PAPSRQLITEGFGANPLLQVHWY 197
Query: 871 PFESHGYAARES 882
H +A S
Sbjct: 198 EEAGHSFARTSS 209
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 0.001
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 27/156 (17%)
Query: 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-- 800
+ P+ A G S L A+ P F + SG N + +
Sbjct: 98 TREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWP 157
Query: 801 ----------FGFQNEDRTLWEATSTYVEMSPFMSANKLKK---PILLVHGEEDNNS--- 844
G+ + + P + +L I + G +
Sbjct: 158 TLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGG 217
Query: 845 ---------GTLTMQSDRFFNALKGHGALCRLVILP 871
G + F + G + P
Sbjct: 218 DNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFP 253
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 39.1 bits (90), Expect = 0.002
Identities = 30/265 (11%), Positives = 54/265 (20%), Gaps = 54/265 (20%)
Query: 647 KDGVQLSATLYLPPGYDPSKDGPLPCL--FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS 704
+G +L P P K+ + F F G
Sbjct: 12 NNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYLSTNG----------FH 61
Query: 705 VLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVG 764
V + + G ++ G DE L + I +
Sbjct: 62 VFRYDSLHH---VGLSS---GSIDEFTMTTGKNSLCTVYHWLQTK-------GTQNIGLI 108
Query: 765 GHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV---- 818
S A A + L + + GF + E +
Sbjct: 109 AASLSA-RVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGH 167
Query: 819 ------------------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
S P++ D+ + ++
Sbjct: 168 KLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDW--VKQEEVYDMLAHIR- 224
Query: 861 HGALCRLVILPFESHGYAARESIMH 885
C+L L SH ++
Sbjct: 225 -TGHCKLYSLLGSSHDLGENLVVLR 248
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.6 bits (88), Expect = 0.002
Identities = 31/250 (12%), Positives = 66/250 (26%), Gaps = 24/250 (9%)
Query: 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDN------FVWV 252
G + F D +W D+ +G R + + + NA F +
Sbjct: 11 HGDRIIFVCCDD----------LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVM 60
Query: 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312
S+L + G+ + + + + D + + + +
Sbjct: 61 RGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 120
Query: 313 TTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372
T L V DG T + + + I ++ P+ G +
Sbjct: 121 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 180
Query: 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432
+ + + + V G R ++ DG D + + T
Sbjct: 181 SGAFK-------KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSF 232
Query: 433 DIIYTQQAEP 442
Y +
Sbjct: 233 TDYYPRHLNT 242
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.003
Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 2/137 (1%)
Query: 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800
A + + G + ++
Sbjct: 113 VGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFT 172
Query: 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860
+ ++E + V + ++ + LVH D Q++ + L+
Sbjct: 173 RLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDEL--LTLRQTNCLISCLQD 230
Query: 861 HGALCRLVILPFESHGY 877
+ +L + H
Sbjct: 231 YQLSFKLYLDDLGLHND 247
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 958 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.96 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.96 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.96 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.89 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.87 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.86 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.86 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.85 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.84 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.83 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.83 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.82 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.82 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.81 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.81 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.8 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.8 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.79 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.79 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.79 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.79 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.77 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.76 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.76 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.74 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.74 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.71 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.71 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.71 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.7 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.7 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.69 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.68 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.67 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.67 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.67 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.66 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.66 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.63 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.63 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.63 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.63 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.62 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.62 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.61 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.6 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.6 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.6 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.6 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.6 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.59 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.59 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.59 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.58 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.58 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.56 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.55 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.55 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.55 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.55 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.53 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.53 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.51 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.51 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.51 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.51 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.51 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.5 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.49 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.49 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.49 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.49 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.48 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.47 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.47 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.46 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.45 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.41 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.39 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.38 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.35 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.35 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.35 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.34 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.34 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.34 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.3 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.29 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.26 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.21 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.19 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.1 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.1 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.04 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.94 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.89 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.88 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.88 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.82 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.8 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.79 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.76 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.75 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.7 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.68 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.56 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.55 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.55 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.55 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.51 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.49 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.48 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.48 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.48 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.42 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.4 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.39 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.39 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.37 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.37 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.36 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.35 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.34 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.3 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.29 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.26 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.23 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.23 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.22 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.15 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.14 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.13 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.03 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.01 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.73 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.71 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.58 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.5 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.41 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.38 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.23 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.21 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.09 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.9 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.57 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 95.46 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.23 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 95.18 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.71 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.67 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 94.62 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.18 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.39 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 90.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.41 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 89.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 89.17 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 88.06 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 87.48 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 87.44 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 87.4 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 86.97 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 84.19 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 82.02 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.96 E-value=3.7e-29 Score=262.03 Aligned_cols=242 Identities=19% Similarity=0.230 Sum_probs=196.9
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
...+.++|++.||.+|++++|.|++. +++.|+||++|||++.... ..| ...++.|+++||+|+
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~----~~~~Pviv~~HGG~~~~~~---------~~~----~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA----PTPGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS----CSSEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHHTCEEE
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC----CCCceEEEEECCCCccCCC---------ccc----cHHHHHHHhhccccc
Confidence 45788999999999999999999762 3458999999997643211 112 245678999999999
Q ss_pred EcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+++++..|+|..... ..+....+.|+.++++|+.++. ++++++|+|+|+||.+++.++..+|+.++++++.+|+
T Consensus 73 ~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~ 150 (260)
T d2hu7a2 73 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASV 150 (260)
T ss_dssp EECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCC
T ss_pred cceeeeccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccc
Confidence 9888877777765432 2334567889999999999975 5689999999999999999999999999999999998
Q ss_pred CCCCCC----CCCc-ccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 002164 794 YNRTLT----PFGF-QNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (958)
Q Consensus 794 ~~~~~~----~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (958)
.+.... ...+ .......+.+.+.+...+|+..++++++|+||+||++|.+|| +.++.+++++|+..|++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp--~~~~~~~~~~l~~~~~~~~~~ 228 (260)
T d2hu7a2 151 VDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTP--LKPLLRLMGELLARGKTFEAH 228 (260)
T ss_dssp CCHHHHHHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccchhhcccccCCCceeeecccCceec--HHHHHHHHHHHHHCCCCeEEE
Confidence 763210 0000 001122345667788899999999999999999999999999 999999999999999999999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 869 ILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 869 ~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+||+++|++...++..++++.+++||.+||+
T Consensus 229 ~~~g~~H~~~~~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 229 IIPDAGHAINTMEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp EETTCCSSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCChHhHHHHHHHHHHHHHHHhc
Confidence 9999999998888888999999999999985
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=6e-29 Score=260.22 Aligned_cols=249 Identities=21% Similarity=0.260 Sum_probs=196.7
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
++.|.+.|...+|+++.+.|++|+++++.++ +|+||++|||+.... .. ..+. .......++++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk--~P~iv~~HGGp~~~~------~~--~~~~--~~~~~~~~a~~g~~V~ 68 (258)
T d2bgra2 1 MPSKKLDFIILNETKFWYQMILPPHFDKSKK--YPLLLDVYAGPCSQK------AD--TVFR--LNWATYLASTENIIVA 68 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECTTCCTTSC--EEEEEECCCCTTCCC------CC--CCCC--CSHHHHHHHTTCCEEE
T ss_pred CCceeEEEEEeCCcEEEEEEEECCCcCCCCC--eeEEEEEcCCCCccc------CC--CccC--cCHHHHHHhcCCcEEE
Confidence 4578999999999999999999999987664 999999999853211 11 1111 1123345678999999
Q ss_pred EcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.+++++..++|..+. ...+......|+.++++++.+++.+|+++|+++|+|+||.+++.++...|+++++++..++.
T Consensus 69 ~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T d2bgra2 69 SFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPV 148 (258)
T ss_dssp EECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCC
T ss_pred eecccccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecc
Confidence 988887766664322 23344567888999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCCCCCc---ccccchhhhcHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 002164 794 YNRTLTPFGF---QNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (958)
Q Consensus 794 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (958)
.......... .......+...+.+...+++..+.+++ +|+|++||++|.+|| +.++.+++++|+..|+++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s~~~~~~l~~~g~~~~~~~ 226 (258)
T d2bgra2 149 SRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMW 226 (258)
T ss_dssp CCGGGSBHHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHHTCCCEEEE
T ss_pred cccccccccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCccc--HHHHHHHHHHHHHCCCCEEEEE
Confidence 5432211100 001122344566777889998888875 799999999999999 9999999999999999999999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 870 LPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 870 ~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||+++|++...+....+.+.+.+||+++|.
T Consensus 227 ~~g~~H~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 227 YTDEDHGIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp ETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 999999998778888899999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.3e-29 Score=263.31 Aligned_cols=239 Identities=16% Similarity=0.166 Sum_probs=181.4
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.||.+|++++|+|++++++++ +|+||++||||+.... .+.+.. ....+.||++||+|+++|++++.++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k--~Pviv~~HGGp~~~~~--------~~~~~~--~~~~~~la~~G~~vv~~d~rGs~~~ 77 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTH--YPLLLVVDGTPGSQSV--------AEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQ 77 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSC--EEEEEECCCCTTCCCC--------CCCCCC--SHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred eCCeEEEEEEEECCCcCCCCc--eeEEEEEcCCccccCc--------CCCcCc--chHHHHHhcCCcEEEEecccccccc
Confidence 499999999999999877664 9999999998642111 112211 1234578999999999998887777
Q ss_pred CCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEeccCCCCCCC
Q 002164 727 GDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTLT 799 (958)
Q Consensus 727 G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~~~ 799 (958)
|..+. ...+....+.|+.++++|+.+++.+|++||+++|+|+||++|++++...++ .+++.+...++......
T Consensus 78 g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d1xfda2 78 GTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY 157 (258)
T ss_dssp HHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS
T ss_pred chhHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc
Confidence 65432 233445678999999999999999999999999999999999998876643 57777777776543221
Q ss_pred CCCc-ccccchhhhcHHHHHhcCcccccCCC-CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 800 PFGF-QNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 800 ~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
.... ......+..+...+...++...+.++ ++|+|++||+.|.+|| +.++.+++++|++.|+++++++||+++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp--~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~ 235 (258)
T d1xfda2 158 ASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYF 235 (258)
T ss_dssp BHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSC
T ss_pred ccccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 1000 00001111223345556677767665 6899999999999999 999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhhc
Q 002164 878 AARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
.......++++.+++||+++|+
T Consensus 236 ~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 236 TSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCcCHHHHHHHHHHHHHHhhC
Confidence 8777778888999999999875
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.91 E-value=4.8e-23 Score=217.66 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=178.9
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
+++|.++|++.||.+|+++|++|+++++++ ++|+||++|||++..+... ........++..|++++
T Consensus 5 y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~iv~~HGG~~~~~~~~------------~~~~~~~~~~~~~~~~~ 70 (280)
T d1qfma2 5 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDG--SHPAFLYGYGGFNISITPN------------YSVSRLIFVRHMGGVLA 70 (280)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCCCSS--CSCEEEECCCCTTCCCCCC------------CCHHHHHHHHHHCCEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCCCCC--CeEEEEEECCCCcccCCCC------------cchhhhhhhcccceeee
Confidence 357889999999999999999999987654 5999999999875433211 11223445566788888
Q ss_pred EcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
...++....++.... ..........+...++.+...+...+..+++++|+|.||.++..++...++.+++++...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~ 150 (280)
T d1qfma2 71 VANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGV 150 (280)
T ss_dssp EECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCC
T ss_pred ccccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccc
Confidence 766544433322211 12334556677777788888888888899999999999999999999999999999999988
Q ss_pred CCCCCCCCC-cc------cccchhhhcHHHHHhc------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 794 YNRTLTPFG-FQ------NEDRTLWEATSTYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 794 ~~~~~~~~~-~~------~~~~~~~~~~~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
.+....... .. ......+.....+... +++..+.....|+||+||++|.+|| +.++++++++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp--~~~s~~l~~aL~~ 228 (280)
T d1qfma2 151 MDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQY 228 (280)
T ss_dssp CCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHH
T ss_pred cchhhhccccccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCC--HHHHHHHHHHHHH
Confidence 764321100 00 0011122222333333 4444444445699999999999999 9999999999964
Q ss_pred -------CCCcEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHhhccCC
Q 002164 861 -------HGALCRLVILPFESHGYAARE-SIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 861 -------~g~~~~~~~~p~~~H~~~~~~-~~~~~~~~i~~fl~~~l~~~~ 902 (958)
.|+++++++||++||++.... +..+.+.++++||++||+...
T Consensus 229 ~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~ 278 (280)
T d1qfma2 229 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 278 (280)
T ss_dssp HTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 478999999999999986543 334667789999999998643
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=6.2e-23 Score=223.93 Aligned_cols=235 Identities=19% Similarity=0.187 Sum_probs=170.3
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
+.....|.++++. +|..|+++++.|++ .++.|+||++||... ...........|+++||
T Consensus 101 ~~~~~~e~v~ip~-dg~~l~g~l~~P~~-----~~~~P~Vi~~hG~~~---------------~~e~~~~~~~~l~~~G~ 159 (360)
T d2jbwa1 101 LLSPPAERHELVV-DGIPMPVYVRIPEG-----PGPHPAVIMLGGLES---------------TKEESFQMENLVLDRGM 159 (360)
T ss_dssp GSSSCEEEEEEEE-TTEEEEEEEECCSS-----SCCEEEEEEECCSSC---------------CTTTTHHHHHHHHHTTC
T ss_pred hCCCCeEEeecCc-CCcccceEEEecCC-----CCCceEEEEeCCCCc---------------cHHHHHHHHHHHHhcCC
Confidence 3445678899986 89999999999975 346999999999521 11112345678999999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+|++ ++.+|+|.+............++..+++|+..++.+|++||+|+|+||||++|+.+|+..| +++++|+.+|+
T Consensus 160 ~vl~---~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~ 235 (360)
T d2jbwa1 160 ATAT---FDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGF 235 (360)
T ss_dssp EEEE---ECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC
T ss_pred EEEE---EccccccccCccccccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEccc
Confidence 9999 5556777664432222233445678899999999999999999999999999999999995 69999999998
Q ss_pred CCCCCCCCCcccccchhh---------h--cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC
Q 002164 794 YNRTLTPFGFQNEDRTLW---------E--ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (958)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (958)
++......... .....| . ........+....+.++++|+||+||++|. || +.++.++++++...
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp--~~~~~~l~~~~~~~- 310 (360)
T d2jbwa1 236 SDLDYWDLETP-LTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE- 310 (360)
T ss_dssp SCSTTGGGSCH-HHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG-
T ss_pred ccHHHHhhhhh-hhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cC--HHHHHHHHHhcCCC-
Confidence 77432211000 000000 0 012233445566788999999999999997 68 89999999987543
Q ss_pred CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccC
Q 002164 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 863 ~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
.++++++++++|... .+.......+.+||.++|...
T Consensus 311 -~~~l~~~~~g~H~~~--~~~~~~~~~i~dWl~~~L~~g 346 (360)
T d2jbwa1 311 -HLNLVVEKDGDHCCH--NLGIRPRLEMADWLYDVLVAG 346 (360)
T ss_dssp -GEEEEEETTCCGGGG--GGTTHHHHHHHHHHHHHHTSS
T ss_pred -CeEEEEECCCCcCCC--cChHHHHHHHHHHHHHHhccC
Confidence 578889999999652 334556778999999999643
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1e-22 Score=220.01 Aligned_cols=236 Identities=16% Similarity=0.100 Sum_probs=168.4
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.+.++|++.||.+|++++++|++. .+++|+||++||++.... + ......|+++||
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~----~~~~P~Vv~~hG~~~~~~------------~----~~~~~~~a~~G~ 109 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 109 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC----CCCccEEEEecCCCCCcC------------c----HHHHHHHHhCCC
Confidence 44456788999999999999999999863 335999999999753211 1 112347899999
Q ss_pred EEEEcCCCCCCCCCCcc------------------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 002164 714 AILGGPTTPIIGEGDEE------------------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYG 769 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~------------------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~G 769 (958)
+|+.+|++++.+.+... .........+.|+.++++++..++.+|++|++++|+|+|
T Consensus 110 ~v~~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~G 189 (322)
T d1vlqa_ 110 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 189 (322)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEeeccccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccc
Confidence 99996665443221110 011233456889999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-----Ccccc--------cchhhhcHHHHHhcCcccccCCCCCCEEEE
Q 002164 770 AFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-----GFQNE--------DRTLWEATSTYVEMSPFMSANKLKKPILLV 836 (958)
Q Consensus 770 G~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii 836 (958)
|++++.+++..| +++++++..+..+...... ..... ........+.+..++|+.++.++++|+||+
T Consensus 190 G~~a~~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~ 268 (322)
T d1vlqa_ 190 GGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 268 (322)
T ss_dssp HHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred hHHHHHHHhcCC-CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEE
Confidence 999999999884 6888888877544211000 00000 000011123445578999999999999999
Q ss_pred eeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 837 HGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 837 ~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
||++|.+|| ++++.++++++ +.++++++||+++|.... .......++||+++|+
T Consensus 269 ~G~~D~~vp--~~~~~~~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 269 VGLMDNICP--PSTVFAAYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp EETTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred EeCCCCCcC--HHHHHHHHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 999999999 88887777655 568999999999997632 2223456799999873
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=2.2e-22 Score=216.91 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=169.8
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...++.+.++|++.||.+|++++++|++ .+++|+||++||+.... ......+..|+++||
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~-----~~~~P~vv~~HG~~~~~---------------~~~~~~~~~la~~Gy 110 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY---------------DGEIHEMVNWALHGY 110 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS---------------GGGHHHHHHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC-----CCCceEEEEecCCCCCc---------------cchHHHHHHHHHCCC
Confidence 3445678899999999999999999976 35699999999964211 112245668999999
Q ss_pred EEEEcCCCCCCCCCCcccc--------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 002164 714 AILGGPTTPIIGEGDEEAN--------------------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMT 773 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~--------------------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a 773 (958)
+|+++|++ |+|.+... .......+.|...+++++..++.+|+++++++|+|+||.++
T Consensus 111 ~vi~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~ 187 (318)
T d1l7aa_ 111 ATFGMLVR---GQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLT 187 (318)
T ss_dssp EEEEECCT---TTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHH
T ss_pred EEEEEeeC---CCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHH
Confidence 99995554 55544211 11234567899999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEEeccCCCCCCC------CCCcc------cccchhhh---cHHHHHhcCcccccCCCCCCEEEEee
Q 002164 774 ANLLAHAPHLFCCGIARSGAYNRTLT------PFGFQ------NEDRTLWE---ATSTYVEMSPFMSANKLKKPILLVHG 838 (958)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~------~~~~~------~~~~~~~~---~~~~~~~~sp~~~~~~~~~P~Lii~G 838 (958)
+.++...+. ++++++..+....... ..... ......+. ........++...++++++|+||+||
T Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G 266 (318)
T d1l7aa_ 188 IAAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIG 266 (318)
T ss_dssp HHHHHHCSC-CSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEE
T ss_pred HHHhhcCcc-cceEEEeccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEE
Confidence 999999954 6667766654321100 00000 00011111 11223345667778899999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
++|.+|| ++++.++++++ +.++++++||+++|.+. .+..+++++||++||++
T Consensus 267 ~~D~~vp--~~~~~~~~~~l---~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 267 LIDKVTP--PSTVFAAYNHL---ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILKG 318 (318)
T ss_dssp TTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHCC
T ss_pred CCCCCcC--HHHHHHHHHHc---CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCCC
Confidence 9999999 99999998876 45799999999999864 45678899999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2.5e-22 Score=219.86 Aligned_cols=337 Identities=14% Similarity=0.096 Sum_probs=212.5
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCC
Q 002164 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~ 188 (958)
......||| ||+++||.+.. +|++|++.+ +..+++. ++
T Consensus 4 ~~~~~~fSP~dG~~~a~~~~g----------------------------------~v~v~d~~~----~~~~~~~---~~ 42 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVSRG----------------------------------QAFIQDVSG----TYVLKVP---EP 42 (360)
T ss_dssp GGGEEEEEECGGGCEEEEETT----------------------------------EEEEECTTS----SBEEECS---CC
T ss_pred hhhcccccCCCCCEEEEEECC----------------------------------eEEEEECCC----CcEEEcc---CC
Confidence 344578999 99999999874 899999854 6666653 34
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+..++|||||++|+++... ....|+++++++|+.++++..... +..++|+|||+.|++..
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~-------~g~~v~v~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~------ 104 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTR-------EGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDRNGKFAVVAN------ 104 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEET-------TEEEEEEEETTTCCEEECCCCCCS-----EEEEEECTTSSEEEEEE------
T ss_pred CCEEEEEECCCCCEEEEEEcC-------CCCEEEEEECCCCcEEEeeCCCce-----EEeeeecccccccceec------
Confidence 578999999999999997742 245699999999999988766554 67899999999999871
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-C-ccccccccCCCCcE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~~~~~SpDGk~ 345 (958)
....++.+++ +++...+.. . ..+..++|||||++
T Consensus 105 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 141 (360)
T d1k32a3 105 -------------------------------------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 141 (360)
T ss_dssp -------------------------------------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred -------------------------------------------cccccccccccccceeeeeecccccccchhhccceee
Confidence 2345888888 666554443 3 56778999999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|++......... .......+++|++.+++...++... .....+.|+|||+.|++..
T Consensus 142 la~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~l~~~s-------- 197 (360)
T d1k32a3 142 IAYGFPLKHGET---DGYVMQAIHVYDMEGRKIFAATTEN-------------SHDYAPAFDADSKNLYYLS-------- 197 (360)
T ss_dssp EEEEEEECSSTT---CSCCEEEEEEEETTTTEEEECSCSS-------------SBEEEEEECTTSCEEEEEE--------
T ss_pred eeeeccccccce---eeccccceeeeccccCceeeecccc-------------cccccccccCCCCEEEEEe--------
Confidence 999875543211 1223457899999988877766543 2235688999999998852
Q ss_pred ccccccCCeEEEEeCCC-----CCCCCceEEEeeccccCceeeecCCceEEEEEec-cccceEEEEEcCCCCCCCcEEEe
Q 002164 426 KVEVTPRDIIYTQQAEP-----VQGEGPEILHKLDLRYGGISWCDDSLALVYESWY-KTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~-----~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
.+..+.+++... ..+.+...+.........+.|+++++.++..... .+...+++.++...+ ....+.
T Consensus 198 -----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 270 (360)
T d1k32a3 198 -----YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG--DYRMII 270 (360)
T ss_dssp -----SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEE
T ss_pred -----CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC--ceeEee
Confidence 122222232100 0111222222233344567899998877644321 111234666666553 222222
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
........ +.+.+++....+.. . ......|++||+++++...+... +
T Consensus 271 ~~~~~~~~-------~~~~~~~~~~~~~~-------------~-----~~~~~~i~~~d~~~~~~~~~~~~--------v 317 (360)
T d1k32a3 271 PLESSILI-------YSVPVHGEFAAYYQ-------------G-----APEKGVLLKYDVKTRKVTEVKNN--------L 317 (360)
T ss_dssp ECSSEEEE-------EECCCCCSHHHHHH-------------C-----CCCCEEEEEEETTTCCEEEEEEE--------E
T ss_pred ecCCCceE-------EEEEecCCCeeEEE-------------e-----cCCCCEEEEEECCCCeEEEecCC--------c
Confidence 11111000 22222222111111 0 11234699999999887655421 1
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
. .++|||||++|++.... ..++++++.+|+.+.
T Consensus 318 ~-------~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 318 T-------DLRLSADRKTVMVRKDD----GKIYTFPLEKPEDER 350 (360)
T ss_dssp E-------EEEECTTSCEEEEEETT----SCEEEEESSCTTSCE
T ss_pred C-------EEEECCCCCEEEEEECC----CeEEEEECCCCCcce
Confidence 2 25799999999876553 459999998876544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.5e-20 Score=210.18 Aligned_cols=356 Identities=11% Similarity=0.031 Sum_probs=208.5
Q ss_pred ceeEEEccCCCCCCceeee-ccCCCC-CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 164 GIGIHQLFPDGKLGQEIEI-QGFPDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~l-t~~~~~-~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+|+++++.+ +..+.| +..+-. ..+....|||||++|+|..+....-.......+|++|+.+++.++|+......
T Consensus 38 ~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred cEEEEECCC----CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 688888865 343433 221111 14567789999999999765332212234678999999999999887544321
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
..+..+.|||||+.|+|+ ...+||+++.
T Consensus 114 --~~l~~~~wSPDG~~iafv--------------------------------------------------~~~nl~~~~~ 141 (465)
T d1xfda1 114 --AKLQYAGWGPKGQQLIFI--------------------------------------------------FENNIYYCAH 141 (465)
T ss_dssp --CCCSBCCBCSSTTCEEEE--------------------------------------------------ETTEEEEESS
T ss_pred --cccceeeeccCCceEEEE--------------------------------------------------ecceEEEEec
Confidence 114578999999999998 3356888887
Q ss_pred -CCeeeecCCC--cc------------------ccccccCCCCcEEEEEeecCCcc--cccc----------------CC
Q 002164 322 -DGTVKEIGPP--AV------------------YTSLDPSPDEKYILISSIHRPYS--FIVP----------------CG 362 (958)
Q Consensus 322 -~g~~~~l~~~--~~------------------~~~~~~SpDGk~l~~~~~~~~~~--~~~~----------------~~ 362 (958)
++...+++.. .. ...+.|||||++|||.+.+.... ...+ ..
T Consensus 142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~ 221 (465)
T d1xfda1 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (465)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence 6666666543 11 12456999999999987543210 0000 00
Q ss_pred CC---CceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEe
Q 002164 363 RF---PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQ 439 (958)
Q Consensus 363 ~~---~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (958)
.. ...++++|++++..+.....+.... ........+.|+||++.++++.++. .....++++|
T Consensus 222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~------~~~~y~~~~~W~~d~~~~~~~~nR~---------q~~~~i~~~d 286 (465)
T d1xfda1 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPR------MREYYITMVKWATSTKVAVTWLNRA---------QNVSILTLCD 286 (465)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGG------GSSEEEEEEEESSSSEEEEEEEETT---------SCEEEEEEEE
T ss_pred CCCCCceeEEEEecCCCcEEEEEeccCcCc------cccceeeeeEEcCCCeEEEEEEccc---------cccceEEEEc
Confidence 00 1257788887655433322111100 0011235688999998666654432 2233578888
Q ss_pred CCCCCCCCceEEEee--cc----ccCceeeecCCceEEEEE--eccccceEEEEEcCCCC-----CCCcEEEeccCCccc
Q 002164 440 AEPVQGEGPEILHKL--DL----RYGGISWCDDSLALVYES--WYKTRRTRTWVISPGSK-----DVAPRILFDRSSEDV 506 (958)
Q Consensus 440 ~~~~~g~~~~~l~~~--~~----~~~~~~~spDg~~l~~~~--~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~ 506 (958)
+ .+++.+.+... +. ....+.|++||+.++|.. +.+ +..++|.+.+.+. ....+.++....+..
T Consensus 287 ~---~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~-g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~ 362 (465)
T d1xfda1 287 A---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG-GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (465)
T ss_dssp T---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS-SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred C---CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeec-ccCceEEEEeccccccCCCceeEEeccCCceEE
Confidence 5 55666666322 22 234589999999988753 333 2355776654321 012234443332211
Q ss_pred cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCC
Q 002164 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (958)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (958)
. .+.|..+++.|+|... ...+ ...+||.++++++..+++...... +. ...
T Consensus 363 -~-----i~~~d~~~~~vyF~a~--------------~~~p--~~~hly~v~l~g~~~~~~lt~~~~---~~-----~~~ 412 (465)
T d1xfda1 363 -K-----ILAYDEKGNKIYFLST--------------EDLP--RRRQLYSANTVGNFNRQCLSCDLV---EN-----CTY 412 (465)
T ss_dssp -E-----EEEEETTTTEEEEEES--------------SSCT--TCCEEEEECSSTTCCCBCSSTTSS---SS-----CCC
T ss_pred -E-----EEEEcCCCCEEEEEEe--------------CCCC--CceEEEEEECCCCCcceeeccccC---CC-----CCE
Confidence 1 1457777777777652 2221 234899999987655443322210 00 011
Q ss_pred ccccccccCCEEEEEEecCCCCceEEEEECCCCCee-Eee
Q 002164 587 TEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC-QIT 625 (958)
Q Consensus 587 ~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~-~Lt 625 (958)
..++|||||++++..++++..|. +++++..+++.. .|+
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEc
Confidence 24679999999999999998776 566676666644 444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.2e-20 Score=205.88 Aligned_cols=358 Identities=11% Similarity=0.071 Sum_probs=217.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC-C
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-G 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~-~ 188 (958)
.+...+|||||++|+|..+. .. ..|-++...+|++++.. +..+.|+.... .
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~----------------------~~--~~r~s~~~~~~i~d~~~----~~~~~l~~~~~~~ 113 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNV----------------------EP--IYQHSYTGYYVLSKIPH----GDPQSLDPPEVSN 113 (465)
T ss_dssp TCSEEEECTTSSEEEEEESC----------------------CC--CSSSCCCSEEEEEESSS----CCCEECCCTTCCS
T ss_pred ccceeEECCCCCeEEEEEcc----------------------cc--eeEeeccccEEEEEccC----CceeeccCccCCc
Confidence 34567899999999998763 11 11112335789999976 55666653222 2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--cc------------cccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NA------------IFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~~------------~~~~~~wspD 254 (958)
..+..|.|||||++|||++ ..+||+++..+++..++|..+.... ++ .-..+-||||
T Consensus 114 ~~l~~~~wSPDG~~iafv~----------~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD 183 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred cccceeeeccCCceEEEEe----------cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCC
Confidence 2567899999999999987 5689999999999888886543211 00 0124669999
Q ss_pred CeEEEEEecCCCCCCC---CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC
Q 002164 255 STLLVCTIPLLRGDPP---KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP 330 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~ 330 (958)
|+.|+|...+...... ........+...... |.- ....+ ...+|+++++ ++..+....
T Consensus 184 gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~---------Yp~--~G~~n-------p~~~l~v~d~~~~~~~~~~~ 245 (465)
T d1xfda1 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH---------YPK--AGSEN-------PSISLHVIGLNGPTHDLEMM 245 (465)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE---------CCB--TTSCC-------CEEEEEEEESSSSCCCEECC
T ss_pred CCeEEEEEecccccceeecccccccccceeeeee---------ccc--cCCCC-------CceeEEEEecCCCcEEEEEe
Confidence 9999998544433210 000000011111000 000 00000 2357999999 554333221
Q ss_pred C--------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcc
Q 002164 331 P--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (958)
Q Consensus 331 ~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (958)
. ..+..+.|+||++.+++..++... ...+.++|..++..+.+.... ...|.+ ....
T Consensus 246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~---------~~~i~~~d~~tg~~~~~~~e~----~~~wv~---~~~~ 309 (465)
T d1xfda1 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQN---------VSILTLCDATTGVCTKKHEDE----SEAWLH---RQNE 309 (465)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC---------EEEEEEEETTTCCEEEEEEEE----CSSCCC---CCCC
T ss_pred ccCcCccccceeeeeEEcCCCeEEEEEEccccc---------cceEEEEcCCCCcEEEEEEEc----CCceEe---ccCC
Confidence 1 124567899999977777665321 236888899887777664321 111111 1124
Q ss_pred eeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCC----CCCCCCceEEEeeccccCce-eeecCCceEEEEEecc
Q 002164 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE----PVQGEGPEILHKLDLRYGGI-SWCDDSLALVYESWYK 477 (958)
Q Consensus 403 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~g~~~~~l~~~~~~~~~~-~~spDg~~l~~~~~~~ 477 (958)
.+.|+|||+.++|..... .++++++|.+.+. ...++..++||.+++.+..+ .|+.+++.|+|.++.+
T Consensus 310 ~p~~~~dg~~~~fi~~se--------~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~ 381 (465)
T d1xfda1 310 EPVFSKDGRKFFFIRAIP--------QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (465)
T ss_dssp CCEECTTSCSEEEEEEEC--------CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred ceeEccCCCeeEEEEeee--------ecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence 578999999988752221 1345667666431 13566678899999988775 6999999999998754
Q ss_pred c-cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEE
Q 002164 478 T-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDL 556 (958)
Q Consensus 478 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 556 (958)
. ...+||.++++++. ....++...... .+...++|||||++++...... +.|...+
T Consensus 382 ~p~~~hly~v~l~g~~-~~~~lt~~~~~~----~~~~~~~~S~~~~y~v~~~s~~------------------~~P~~~~ 438 (465)
T d1xfda1 382 LPRRRQLYSANTVGNF-NRQCLSCDLVEN----CTYFSASFSHSMDFFLLKCEGP------------------GVPMVTV 438 (465)
T ss_dssp CTTCCEEEEECSSTTC-CCBCSSTTSSSS----CCCCEEEECTTSSEEEEECCSS------------------SSCCEEE
T ss_pred CCCceEEEEEECCCCC-cceeeccccCCC----CCEEEEEECCCCCEEEEEeecC------------------CCCeEEE
Confidence 3 45789999999862 333333221111 1222378999999988776321 2345777
Q ss_pred EECCCCceEEEecC
Q 002164 557 FDINTGSKERIWES 570 (958)
Q Consensus 557 ~dl~~g~~~~l~~~ 570 (958)
++..+++.......
T Consensus 439 ~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 439 HNTTDKKKMFDLET 452 (465)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCCEEEEEcC
Confidence 77777766555443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.9e-20 Score=192.39 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=173.3
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcccc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~ 243 (958)
+|||.|. || +..++|+..+ ..+..|+|||||++|||++. ..+...+|+++..++..++++.....
T Consensus 20 ~l~i~d~--dG--~~~~~l~~~~--~~~~sP~wSPDGk~IAf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (269)
T d2hqsa1 20 ELRVSDY--DG--YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH--- 84 (269)
T ss_dssp EEEEEET--TS--CSCEEEEEES--SCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTTCCEEEEECCSSC---
T ss_pred EEEEEcC--CC--CCcEEEecCC--CceeeeEECCCCCEEEEEEe------eccCcceeeeecccCceeEEeeeecc---
Confidence 7999987 55 6778886533 46789999999999999874 45677899999999999888876654
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-C
Q 002164 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (958)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~ 322 (958)
...+.|||||+.|++..... +...++.... .
T Consensus 85 --~~~~~~spdg~~i~~~~~~~----------------------------------------------~~~~~~~~~~~~ 116 (269)
T d2hqsa1 85 --NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVMDLAS 116 (269)
T ss_dssp --EEEEEECTTSSEEEEEECTT----------------------------------------------SSCEEEEEETTT
T ss_pred --cccceecCCCCeeeEeeecC----------------------------------------------Cccceeeccccc
Confidence 45789999999999872211 1233444444 4
Q ss_pred CeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCc
Q 002164 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (958)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (958)
......... .....+.++++++.+++.....+ ..++++.+++++...+++.... ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~-------------~~ 173 (269)
T d2hqsa1 117 GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGS-------------QN 173 (269)
T ss_dssp CCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSS-------------EE
T ss_pred ccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeecccc-------------cc
Confidence 444444444 45567789999999999885432 2378888888877766655321 23
Q ss_pred ceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccce
Q 002164 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (958)
Q Consensus 402 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (958)
..+.|||||+.+++.... .....+++++. .++. .+++........+.|||||++|+|.+..++ ..
T Consensus 174 ~~~~~spdg~~~~~~~~~----------~~~~~i~~~~~---~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~-~~ 238 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGM-GS 238 (269)
T ss_dssp EEEEECTTSSEEEEEEEC----------SSCEEEEEEET---TTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETT-EE
T ss_pred cccccccccceeEEEeec----------CCceeeeEeec---cccc-ceEeecCccccceEECCCCCEEEEEEcCCC-Cc
Confidence 467899999999986332 23446778874 4444 455555566678999999999999987654 37
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEecc
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS 519 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 519 (958)
+||+++++++ ..+.++.... .+.. ++|||
T Consensus 239 ~l~~~~~dg~--~~~~lt~~~g-~~~~------p~WSP 267 (269)
T d2hqsa1 239 VLNLVSTDGR--FKARLPATDG-QVKF------PAWSP 267 (269)
T ss_dssp EEEEEETTSC--CEEECCCSSS-EEEE------EEECC
T ss_pred EEEEEECCCC--CEEEEeCCCC-cEEe------EEeCC
Confidence 8999999985 4455554332 1111 67888
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.86 E-value=1.1e-20 Score=187.76 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=155.0
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
+.+.+++...+| ++.+.+.+|..- ...+.+++|++|+.+...+ + .........++.|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~---~~~~~~~~vl~Hph~~~GG--------~--~~~~~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPD---VAVQPVTAIVCHPLSTEGG--------S--MHNKVVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTT---SCCCSEEEEEECSCTTTTC--------S--TTCHHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCC---CCCCCcEEEEECCCCCCCc--------C--CCChHHHHHHHHHHHcCCeEEE
Confidence 346788998777 699999998642 2234688888997542111 1 1111122456778999999999
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
++++|+|.+.+.........+|+.++++|+.++. +.++++++|+||||.+++.++.+. .++++|++++..+..
T Consensus 73 ---fd~RG~G~S~g~~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~ 145 (218)
T d2fuka1 73 ---FNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 145 (218)
T ss_dssp ---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred ---eecCCCccCCCccCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccch
Confidence 5667888887654455678899999999999874 457999999999999999988875 378899998864421
Q ss_pred CCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 798 LTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
. + . ..++.+|+|+|||++|.+|| +++..++++++. .+++++++||++|.|
T Consensus 146 ~----~-----------------~----~~~~~~P~Lvi~G~~D~~vp--~~~~~~l~~~~~---~~~~l~~i~ga~H~f 195 (218)
T d2fuka1 146 D----F-----------------S----DVQPPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHFF 195 (218)
T ss_dssp C----C-----------------T----TCCCCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred h----h-----------------h----ccccccceeeEecCCCcCcC--HHHHHHHHHHcc---CCceEEEeCCCCCCC
Confidence 0 0 0 12356899999999999999 888888876554 357899999999998
Q ss_pred CCcccHHHHHHHHHHHHHHhhc
Q 002164 878 AARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
... ...+.+.+.+|+.+||.
T Consensus 196 ~~~--~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 196 HRK--LIDLRGALQHGVRRWLP 215 (218)
T ss_dssp TTC--HHHHHHHHHHHHGGGCS
T ss_pred CCC--HHHHHHHHHHHHHHhcC
Confidence 643 34677889999999984
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.85 E-value=1.6e-19 Score=205.76 Aligned_cols=359 Identities=11% Similarity=-0.008 Sum_probs=207.0
Q ss_pred ceeEEEccCCCCCCceeeec-cC--C-CCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC
Q 002164 164 GIGIHQLFPDGKLGQEIEIQ-GF--P-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt-~~--~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~ 239 (958)
+|+++++.+ +..+.+. .. . ....+..+.|||||++|||..+....-......++|++|+++++..+++..+.
T Consensus 37 ~~~~~~~~t----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~ 112 (470)
T d2bgra1 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN 112 (470)
T ss_dssp CEEEEETTT----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT
T ss_pred cEEEEECCC----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc
Confidence 789999865 4444432 11 1 12357889999999999998754322223456789999999999998887766
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEE
Q 002164 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (958)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~ 319 (958)
. +..+.|||||+.|+|. ...+||++
T Consensus 113 ~-----~~~~~~SPDG~~ia~~--------------------------------------------------~~~~l~~~ 137 (470)
T d2bgra1 113 N-----TQWVTWSPVGHKLAYV--------------------------------------------------WNNDIYVK 137 (470)
T ss_dssp T-----EEEEEECSSTTCEEEE--------------------------------------------------ETTEEEEE
T ss_pred c-----ccccccccCcceeeEe--------------------------------------------------ecccceEE
Confidence 4 6689999999999998 23468888
Q ss_pred Ec-CCeeeecCCC--------------------ccccccccCCCCcEEEEEeecCCccc--ccc----------------
Q 002164 320 SL-DGTVKEIGPP--------------------AVYTSLDPSPDEKYILISSIHRPYSF--IVP---------------- 360 (958)
Q Consensus 320 ~~-~g~~~~l~~~--------------------~~~~~~~~SpDGk~l~~~~~~~~~~~--~~~---------------- 360 (958)
++ +|+..+++.. +....+.|||||++|+|.+.+..... ..+
T Consensus 138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (470)
T d2bgra1 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (470)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec
Confidence 88 7766665532 11234569999999999875533110 000
Q ss_pred -----CCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeE
Q 002164 361 -----CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (958)
Q Consensus 361 -----~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l 435 (958)
.......+++|+++++....+.... ....+............+.|+++++.++++.+.... ...-.+
T Consensus 218 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~-------~~~~~~ 289 (470)
T d2bgra1 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-------YSVMDI 289 (470)
T ss_dssp CCBTTSCCCEEEEEEEEGGGCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-------EEEEEE
T ss_pred cccccccCCcceEEEEECCCcceeeecccc-ccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC-------ceEEEE
Confidence 0001124556666543321111100 000000000001123468899999876665443210 001124
Q ss_pred EEEeCCCCCCCCceEEE------ee-c-----cccCceeeecCCceE-EEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 436 YTQQAEPVQGEGPEILH------KL-D-----LRYGGISWCDDSLAL-VYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 436 ~~~~~~~~~g~~~~~l~------~~-~-----~~~~~~~~spDg~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
+.++. .++....+. .. . .....+.|++++... ++.+..++ ..+||+++.+++ ....++...
T Consensus 290 ~~~d~---~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg-~~~ly~~~~~g~--~~~~lt~g~ 363 (470)
T d2bgra1 290 CDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKK--DCTFITKGT 363 (470)
T ss_dssp EEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCS--CCEESCCSS
T ss_pred EEecC---CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCc-CceeEEEeccCC--ceeeeccCC
Confidence 44443 333333331 00 1 112346788887654 45555444 478999998874 455655443
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCc-eEEEecCCcccccceeEe
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS-KERIWESDKEKYYETTVA 581 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~-~~~l~~~~~~~~~~~~~~ 581 (958)
... . -.+++|++.|+|..... +..+ ...+||.++++++. .++|+......
T Consensus 364 ~~v-~-------~~~~~d~~~iyf~a~~~------------~~~p--~~~~ly~v~~~g~~~~~~lt~~~~~~------- 414 (470)
T d2bgra1 364 WEV-I-------GIEALTSDYLYYISNEY------------KGMP--GGRNLYKIQLSDYTKVTCLSCELNPE------- 414 (470)
T ss_dssp SCE-E-------EEEEECSSEEEEEESCG------------GGCT--TCBEEEEEETTCTTCEEESSTTTSTT-------
T ss_pred eeE-E-------EEEEECCCEEEEEEecC------------CCCc--ceEEEEEEECCCCCceeEecccccCC-------
Confidence 221 1 12567788888876321 1111 23479999998754 55554321110
Q ss_pred ecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe-eEeec
Q 002164 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS-CQITD 626 (958)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~-~~Lt~ 626 (958)
......++|||||++++..++++..|. +.+++..+|+. +.|++
T Consensus 415 -~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 415 -RCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLED 458 (470)
T ss_dssp -TBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEEC
T ss_pred -CCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEec
Confidence 001123689999999999999999987 45667777764 55553
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.84 E-value=1.2e-20 Score=192.44 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=150.0
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.|.|+|++.||.+++++++.|.+ +++|+||++|++.. ........++.|+++||.|+++
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~------~~~P~vl~~h~~~G---------------~~~~~~~~a~~lA~~Gy~vl~p 61 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIFG---------------VNAFMRETVSWLVDQGYAAVCP 61 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS------SSEEEEEEECCTTB---------------SCHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEECCCC------CCceEEEEeCCCCC---------------CCHHHHHHHHHHHhcCCcceee
Confidence 45678999999999999999964 35999999997421 1111224567899999999998
Q ss_pred CCCCCCCCCCcccch--------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 719 PTTPIIGEGDEEAND--------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~--------------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
|.++..+.+...... ........|+.++++++.+.+. +.+||+++|+|+||.+++.++.+. .+
T Consensus 62 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~--~~ 138 (233)
T d1dina_ 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKG--YV 138 (233)
T ss_dssp CGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHT--CS
T ss_pred eeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeeccccc--cc
Confidence 876554433221110 1123457899999999988875 558999999999999999988775 35
Q ss_pred eEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCc
Q 002164 785 CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (958)
Q Consensus 785 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (958)
.++++..+.. ..+++..+.++++|+|++||++|..+| .+...+++++++ .+.+
T Consensus 139 ~~~~~~~~~~------------------------~~~~~~~~~~i~~Pvl~~~G~~D~~vp--~e~~~~~~~~~~-~~~~ 191 (233)
T d1dina_ 139 DRAVGYYGVG------------------------LEKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFG-ANPL 191 (233)
T ss_dssp SEEEEESCSC------------------------GGGGGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHT-TCTT
T ss_pred ceeccccccc------------------------cccchhhhhccCCcceeeecccccCCC--HHHHHHHHHHHh-cCCC
Confidence 6666654321 012233455688999999999999998 888777777665 5789
Q ss_pred EEEEEeCCCCccCCCc-------ccHHHHHHHHHHHHHH
Q 002164 865 CRLVILPFESHGYAAR-------ESIMHVLWETDRWLQK 896 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~-------~~~~~~~~~i~~fl~~ 896 (958)
+++++|||++|+|... ...+..++++++||.+
T Consensus 192 ~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 192 LQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999998432 2234556788899875
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.84 E-value=2e-20 Score=203.97 Aligned_cols=238 Identities=21% Similarity=0.207 Sum_probs=169.9
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.+.+.|+++||++|.+.+|+|++ .+++|+||+.||...... .... . ....++.|+++||+||.
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~-----~~~~P~il~~~pyg~~~~----~~~~---~----~~~~~~~~a~~GY~vv~- 67 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDV----FAWS---T----QSTNWLEFVRDGYAVVI- 67 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCC----HHHH---T----TSCCTHHHHHTTCEEEE-
T ss_pred EeCeEEECCCCCEEEEEEEEcCC-----CCCEEEEEEEcCCCCccc----cCcC---c----ccHHHHHHHHCCCEEEE-
Confidence 35789999999999999999975 346999999998321000 0000 0 01124589999999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC
Q 002164 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (958)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (958)
.+.+|.|.+.+..........|..++++|+.+++++| .||+++|.|+||++++.+|+..|+.++|++..++..|...
T Consensus 68 --~d~RG~g~S~G~~~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~ 144 (347)
T d1ju3a2 68 --QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYR 144 (347)
T ss_dssp --EECTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCC
T ss_pred --EeeCCccccCCccccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhh
Confidence 4555666666544444556678999999999999987 6999999999999999999999999999999999877532
Q ss_pred CCCCccc-----ccch------------------------------------------------------hh--------
Q 002164 799 TPFGFQN-----EDRT------------------------------------------------------LW-------- 811 (958)
Q Consensus 799 ~~~~~~~-----~~~~------------------------------------------------------~~-------- 811 (958)
..+.+.. .... .|
T Consensus 145 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (347)
T d1ju3a2 145 APWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDH 224 (347)
T ss_dssp CCCSCTTCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTC
T ss_pred hhhhhcCCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhc
Confidence 2111100 0000 00
Q ss_pred -hcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC------------
Q 002164 812 -EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA------------ 878 (958)
Q Consensus 812 -~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~------------ 878 (958)
...+.|.+.++...+.++++|+|+++|..|..+ ..+.++|++++. +.+.++++-|. +|...
T Consensus 225 ~~~~~~w~~~~~~~~~~~i~vP~L~i~G~~D~~~----~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~ 298 (347)
T d1ju3a2 225 PDNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIA 298 (347)
T ss_dssp CSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGG
T ss_pred ccchhhhhcCCHHHHhhcCCCCEEEeccccCCCc----chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCcc
Confidence 001234455677888999999999999999764 457788888875 56788888886 55431
Q ss_pred CcccHHHHHHHHHHHHHHhhccCC
Q 002164 879 ARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 879 ~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
......+.....++||++||++..
T Consensus 299 ~~~~~~~~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 299 ATYPIQEATTMHKAFFDRHLRGET 322 (347)
T ss_dssp GSCCHHHHHHHHHHHHHHHTSCCT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCC
Confidence 112246677788999999998654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=4.6e-19 Score=201.97 Aligned_cols=355 Identities=15% Similarity=0.044 Sum_probs=215.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|||.+.. ....|.+..+.+||+++.+ +..++++..+ .
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~------------------------~~~~r~s~~~~~~l~d~~~----~~~~~l~~~~--~ 112 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNY------------------------VKQWRHSYTASYDIYDLNK----RQLITEERIP--N 112 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEE------------------------EECSSSCEEEEEEEEETTT----TEECCSSCCC--T
T ss_pred ccceeEECCCCCEEEEEECC------------------------cceeeeccCceEEEEECCC----CcccccccCC--c
Confidence 46789999999999998763 0112234446899999966 6666776543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--c------------ccccceEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--N------------AIFDNFVWVNNS 255 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~------------~~~~~~~wspDG 255 (958)
.+..|.|||||++|||+. +.+||+++..+|+..+++....... + .....+.|||||
T Consensus 113 ~~~~~~~SPDG~~ia~~~----------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVW----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp TEEEEEECSSTTCEEEEE----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred cccccccccCcceeeEee----------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC
Confidence 688999999999999976 4589999999999888876543210 0 012357799999
Q ss_pred eEEEEEecCCCCCCC-----CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC
Q 002164 256 TLLVCTIPLLRGDPP-----KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG 329 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~ 329 (958)
+.|+|...+...... ........+..... ..+.. ........++++++ ++....+.
T Consensus 183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~---g~~~~~~~~~v~~~~~~~~~~~~ 244 (470)
T d2bgra1 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV---------------PYPKA---GAVNPTVKFFVVNTDSLSSVTNA 244 (470)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE---------------ECCBT---TSCCCEEEEEEEEGGGCCSSSCC
T ss_pred CccceeEecCCcCceEEEEeeccCCCCCCeeeee---------------ccccc---cccCCcceEEEEECCCcceeeec
Confidence 999998554332210 00000000000000 00000 00002356888888 55332221
Q ss_pred C------------C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEE--eccCceEEEeccCCccccC-ccc
Q 002164 330 P------------P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW--TTDGIFVRELCDLPLAEDI-PIA 393 (958)
Q Consensus 330 ~------------~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~--d~~~~~~~~l~~~~~~~~~-p~~ 393 (958)
. . ..+..+.|+++++.+++..++... ...+.++ |..++..+.+......... ..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~---------~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~ 315 (470)
T d2bgra1 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN---------YSVMDICDYDESSGRWNCLVARQHIEMSTTGW 315 (470)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT---------EEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred cccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC---------ceEEEEEEecCCCCcEEEEEEEeeeeeeccce
Confidence 1 1 234578899999877776654321 1133444 4445565555432211111 111
Q ss_pred ccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEE
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (958)
... .....+.|++++...+++.... +...+||+++. +|+..++++.+++.+..+ +++|++.|+|.
T Consensus 316 i~~--~~~~~~~~~~~~~~~~~~~s~~---------dg~~~ly~~~~---~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~ 380 (470)
T d2bgra1 316 VGR--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTFITKGTWEVIGI-EALTSDYLYYI 380 (470)
T ss_dssp SSS--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSCCEESCCSSSCEEEE-EEECSSEEEEE
T ss_pred eec--ccCCCceeeecCCCcEEEEecc---------CcCceeEEEec---cCCceeeeccCCeeEEEE-EEECCCEEEEE
Confidence 111 1224567888888776654333 34567999985 888899999888877765 67788899998
Q ss_pred Eeccc---cceEEEEEcCCCCCCCcEEEeccC---CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCC
Q 002164 474 SWYKT---RRTRTWVISPGSKDVAPRILFDRS---SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATP 547 (958)
Q Consensus 474 ~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~ 547 (958)
++... ...+||+++++++ ....+++... ...+++ ++|||||++++......
T Consensus 381 a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s------~~fSpdgky~~~~~s~~---------------- 437 (470)
T d2bgra1 381 SNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQYYS------VSFSKEAKYYQLRCSGP---------------- 437 (470)
T ss_dssp ESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCBEE------EEECTTSSEEEEEECSB----------------
T ss_pred EecCCCCcceEEEEEEECCCC-CceeEecccccCCCCCEEE------EEECCCCCEEEEEecCC----------------
Confidence 75332 3468999999885 3444443221 122222 78999999988876322
Q ss_pred CCCCCeEEEEECCCCceEEEecCC
Q 002164 548 EGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 548 ~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
+.|.+.+++..+|+..++++..
T Consensus 438 --~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 438 --GLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp --SSCEEEEEETTTTEEEEEEECC
T ss_pred --CCCeEEEEECCCCCEEEEEecc
Confidence 2356778888888887776543
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.83 E-value=6.9e-20 Score=189.93 Aligned_cols=207 Identities=15% Similarity=0.088 Sum_probs=150.0
Q ss_pred cEEEEEEEeCCC-eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRKDG-VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg-~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
....+++....+ ....+.||+|.+. .++++|+||++||+... ... ...++..||++||+|+
T Consensus 22 ~~~~~~~~~~~~~g~~~~~ly~P~~~---~~g~~P~Vv~~HG~~g~-----------~~~----~~~~a~~lA~~Gy~V~ 83 (260)
T d1jfra_ 22 ATSQTSVSSLVASGFGGGTIYYPTST---ADGTFGAVVISPGFTAY-----------QSS----IAWLGPRLASQGFVVF 83 (260)
T ss_dssp CEEEEEECTTTCSSSCCEEEEEESCC---TTCCEEEEEEECCTTCC-----------GGG----TTTHHHHHHTTTCEEE
T ss_pred ceeEEEeccCCcCcccCEEEEEcCCC---CCCCccEEEEECCCCCC-----------HHH----HHHHHHHHHhCCCEEE
Confidence 344445543221 1245789999763 23469999999996311 111 1235778999999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEecc
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (958)
.++++ |.+.. ......|+.++++++.+. +.+|++||+++|||+||.+++.++...+ +++++|+++|
T Consensus 84 ~~d~~---~~~~~------~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~ 153 (260)
T d1jfra_ 84 TIDTN---TTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTG 153 (260)
T ss_dssp EECCS---STTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESC
T ss_pred EEeeC---CCcCC------chhhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeec
Confidence 96553 43322 234567888899999884 5699999999999999999999999984 6899998877
Q ss_pred CCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 002164 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (958)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~ 872 (958)
... .....++++|+|++||++|.++| +.+..+++......+.+++++.++|
T Consensus 154 ~~~---------------------------~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~~~~~~~~i~g 204 (260)
T d1jfra_ 154 WNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLPGSLDKAYLELRG 204 (260)
T ss_dssp CCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSCTTSCEEEEEETT
T ss_pred ccc---------------------------cccccccccceeEEecCCCCCCC--HHHHHHHHHHhcccCCCEEEEEECC
Confidence 422 11234578999999999999998 7775555555556678999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 873 ESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
++|.+....+ ..+.+.+++||++||+...
T Consensus 205 a~H~~~~~~~-~~~~~~~~~wl~~~L~~d~ 233 (260)
T d1jfra_ 205 ASHFTPNTSD-TTIAKYSISWLKRFIDSDT 233 (260)
T ss_dssp CCTTGGGSCC-HHHHHHHHHHHHHHHSCCG
T ss_pred CccCCCCCCh-HHHHHHHHHHHHHHhcCch
Confidence 9998754443 4567788999999997654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=3.9e-19 Score=185.98 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=177.0
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (958)
.+|||+...+ .+.+..+||++|.+|+..++|+..+.. +.+++|||||+.|+|+....
T Consensus 4 ~~iay~~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~~--------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 60 (269)
T ss_dssp CEEEEEEECS---SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT---------------
T ss_pred CeEEEEEEeC---CCCceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEeec---------------
Confidence 7899988633 344456899999999999999877664 56899999999999983210
Q ss_pred eeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002164 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (958)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~ 358 (958)
...++|.++. ++..++++.. .....+.|||||++|++......
T Consensus 61 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~---- 105 (269)
T d2hqsa1 61 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---- 105 (269)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS----
T ss_pred -------------------------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC----
Confidence 2356889998 7777777766 66778899999999999885432
Q ss_pred ccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002164 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (958)
Q Consensus 359 ~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (958)
...+..+.............. .......|+++++.+++.... .....+++.
T Consensus 106 ------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~----------~g~~~i~~~ 156 (269)
T d2hqsa1 106 ------SLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQNLAFTSDQ----------AGRPQVYKV 156 (269)
T ss_dssp ------SCEEEEEETTTCCEEECCCCS-------------SCEEEEEECTTSSEEEEEECT----------TSSCEEEEE
T ss_pred ------ccceeecccccccceeeeecc-------------ccccccccccccccceecccc----------cCCceEeee
Confidence 112333333333333322221 122356789999888775222 234568888
Q ss_pred eCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEec
Q 002164 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (958)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 518 (958)
+. +++...+++........+.|||||+.|++.....+. ..+++++..++ . ..++.....+ . .++||
T Consensus 157 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~-~~i~~~~~~~~--~-~~~~~~~~~~-~------~p~~S 222 (269)
T d2hqsa1 157 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDLATG--G-VQVLSSTFLD-E------TPSLA 222 (269)
T ss_dssp ET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC-EEEEEEETTTC--C-EEECCCSSSC-E------EEEEC
T ss_pred ec---ccccceeeecccccccccccccccceeEEEeecCCc-eeeeEeecccc--c-ceEeecCccc-c------ceEEC
Confidence 85 666777777667777789999999999999876654 78999998874 2 2332222111 1 16799
Q ss_pred cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCc
Q 002164 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (958)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~ 572 (958)
|||++|+|.... +....||+++++++..++|+...+
T Consensus 223 PDG~~i~f~s~~------------------~~~~~l~~~~~dg~~~~~lt~~~g 258 (269)
T d2hqsa1 223 PNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATDG 258 (269)
T ss_dssp TTSSEEEEEEEE------------------TTEEEEEEEETTSCCEEECCCSSS
T ss_pred CCCCEEEEEEcC------------------CCCcEEEEEECCCCCEEEEeCCCC
Confidence 999999998742 123479999999999999988765
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.82 E-value=1.7e-19 Score=191.47 Aligned_cols=228 Identities=11% Similarity=0.049 Sum_probs=152.0
Q ss_pred EEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEc
Q 002164 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (958)
Q Consensus 639 ~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~ 718 (958)
.....++..||..+++|.+.|++..+. +.|+||++||.... ......++..|+++||.|+++
T Consensus 4 ~~~h~~~~~dg~~l~~w~~~p~~~~~~---~~~~Vvi~HG~~~~---------------~~~~~~~a~~L~~~G~~Vi~~ 65 (302)
T d1thta_ 4 TIAHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFARR---------------MDHFAGLAEYLSTNGFHVFRY 65 (302)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCGG---------------GGGGHHHHHHHHTTTCCEEEE
T ss_pred eeeeEEEcCCCCEEEEEEecCcCCCCC---CCCEEEEeCCCcch---------------HHHHHHHHHHHHHCCCEEEEe
Confidence 345567888999999999999864332 47999999995311 122345678899999999995
Q ss_pred CCCCCCCC-CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 719 PTTPIIGE-GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 719 ~~~~~~G~-G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
| ++|+ |.+.+. .........|+.++++|+.+++ .++++|+||||||.+++.+|.. ..++++|+.+|+.+
T Consensus 66 D---~rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~ 137 (302)
T d1thta_ 66 D---SLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVN 137 (302)
T ss_dssp C---CCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSC
T ss_pred c---CCCCCCCCCCcccCCCHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeeccccc
Confidence 5 4554 555432 2334577899999999998874 4689999999999999887754 35899999998765
Q ss_pred CCC----------CCCCccc--cc-----chhhhc---HHHHHh-----cCcccccCCCCCCEEEEeeCCCCCCCCChHH
Q 002164 796 RTL----------TPFGFQN--ED-----RTLWEA---TSTYVE-----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQ 850 (958)
Q Consensus 796 ~~~----------~~~~~~~--~~-----~~~~~~---~~~~~~-----~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~ 850 (958)
... ....... .. ...... ...+.. .++...+.++++|+|++||++|..|| ++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~--~~~ 215 (302)
T d1thta_ 138 LRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEE 215 (302)
T ss_dssp HHHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHH
T ss_pred HHHHHHHHHhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccC--HHH
Confidence 211 0000000 00 000000 000000 02445678899999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-HHHHHHHHHHHHHH
Q 002164 851 SDRFFNALKGHGALCRLVILPFESHGYAARES-IMHVLWETDRWLQK 896 (958)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~-~~~~~~~i~~fl~~ 896 (958)
++++++.++. .++++.+++|++|.+..... ...+++.+..+...
T Consensus 216 ~~~l~~~i~s--~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~~ 260 (302)
T d1thta_ 216 VYDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 260 (302)
T ss_dssp HHHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CCceEEEecCCCcccccChHHHHHHHHHHHHHHhh
Confidence 9999987754 36899999999999853322 23345555555543
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.82 E-value=2.2e-19 Score=195.48 Aligned_cols=243 Identities=14% Similarity=0.039 Sum_probs=165.0
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
...+..+..+|++.||..|.+.+|+|++. +++.|+||++|||.|..++.. .......++.++++||
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~----~~~~Pviv~~HGGG~~~gs~~----------~~~~~~~~~~la~~g~ 139 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV----EGVLPGLVYTHGGGMTILTTD----------NRVHRRWCTDLAAAGS 139 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC----CSCEEEEEEECCSTTTSSCSS----------SHHHHHHHHHHHHTTC
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC----CCCCCeEEEecCCeeeecccc----------ccccchHHHHHHhhhh
Confidence 44567788899999999999999999863 346999999999875433211 1111245677889999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh-----CCCceeEE
Q 002164 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-----APHLFCCG 787 (958)
Q Consensus 714 ~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~a~ 787 (958)
+|+.++|+...+. .+++.++..++|+.++++|+.++ ...|++||+|+|.|+||++++.++.. ....+.+.
T Consensus 140 ~VvsvdYRla~~~----~pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~ 215 (358)
T d1jkma_ 140 VVVMVDFRNAWTA----EGHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 215 (358)
T ss_dssp EEEEEECCCSEET----TEECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred eeeeeeecccccc----cccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccc
Confidence 9999888644221 13344578899999999999886 34678999999999999999887754 12457888
Q ss_pred EEeccCCCCCCCCCCccc----------ccchhhh-cH----HHH-----HhcCcccccC-------CCCCCEEEEeeCC
Q 002164 788 IARSGAYNRTLTPFGFQN----------EDRTLWE-AT----STY-----VEMSPFMSAN-------KLKKPILLVHGEE 840 (958)
Q Consensus 788 v~~~~~~~~~~~~~~~~~----------~~~~~~~-~~----~~~-----~~~sp~~~~~-------~~~~P~Lii~G~~ 840 (958)
+...|..+.......+.. ....... .. ..| ...+|..... +--.|+||++|+.
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~ 295 (358)
T d1jkma_ 216 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNEL 295 (358)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETT
T ss_pred ccccceeccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCC
Confidence 888887664432111100 0000000 00 000 0112221110 1125999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC------CcccHHHHHHHHHHHHHHhh
Q 002164 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA------ARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~------~~~~~~~~~~~i~~fl~~~l 898 (958)
|.. .+++.+++++|++.|+++++++|||++|+|. ..+..+...+.|..|+..+.
T Consensus 296 D~l----~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 296 DPL----RDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp CTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 954 6789999999999999999999999999752 12334556778888887654
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.81 E-value=8e-19 Score=188.34 Aligned_cols=237 Identities=19% Similarity=0.138 Sum_probs=154.9
Q ss_pred CCCcEEEEEEEeCCCe-EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CC
Q 002164 635 ASLQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RG 712 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G 712 (958)
..+..+++++++.||. .+.+++|+|++. .++.|+||++|||.|..++. . ........++. .|
T Consensus 46 ~~v~~~~~~~~~~~g~~~i~~~~~~P~~~----~~~~Pvvv~iHGGG~~~g~~--------~----~~~~~~~~la~~~G 109 (317)
T d1lzla_ 46 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTA--------E----SSDPFCVEVARELG 109 (317)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCG--------G----GGHHHHHHHHHHHC
T ss_pred CCceEEEEEEecCCCCceEEEEEECCCCC----CCCCcEEEEecCcccccccc--------c----ccchHHHhHHhhcC
Confidence 4456788999988885 699999999762 34699999999986544321 1 12234555654 69
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cee
Q 002164 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFC 785 (958)
Q Consensus 713 ~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~ 785 (958)
|+|+.++|+.... ..+...+.|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ ...
T Consensus 110 ~~V~~vdYrl~pe--------~~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~ 181 (317)
T d1lzla_ 110 FAVANVEYRLAPE--------TTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 181 (317)
T ss_dssp CEEEEECCCCTTT--------SCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred Ccccccccccccc--------ccccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccc
Confidence 9999988854322 23467788999999999875 34899999999999999999998875321 123
Q ss_pred EEEEeccCCCCCCCCCCcc-cccchh-------hh-------------cHHHHHhcCcccccC-CCCCCEEEEeeCCCCC
Q 002164 786 CGIARSGAYNRTLTPFGFQ-NEDRTL-------WE-------------ATSTYVEMSPFMSAN-KLKKPILLVHGEEDNN 843 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~-~~~~~~-------~~-------------~~~~~~~~sp~~~~~-~~~~P~Lii~G~~D~~ 843 (958)
..+...+..+.......+. ...... +. ++......+|..... ...+|+||+||+.|..
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l 261 (317)
T d1lzla_ 182 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL 261 (317)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT
T ss_pred ccccccccccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC
Confidence 3333333222111100000 000000 00 000000111221111 2237999999999943
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHHhhc
Q 002164 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA---RESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~---~~~~~~~~~~i~~fl~~~l~ 899 (958)
.+++++|+++|++.|+++++++|||++|+|.. .........++++||.++|+
T Consensus 262 ----~~~~~~~~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 262 ----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999998742 22344667889999999985
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.81 E-value=3.9e-19 Score=194.97 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=162.5
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
..+.++|+++||++|.+.||+|++ .+++|+||+.|+...... .................+.|+++||+|+.
T Consensus 23 ~~~~v~i~~rDG~~L~~~v~~P~~-----~~~~P~il~~~pYg~~~~----~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 93 (381)
T d1mpxa2 23 IKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDASGR----TERLASPHMKDLLSAGDDVFVEGGYIRVF 93 (381)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHHH----TCSSCCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEeCC-----CCCccEEEEEccCCCCCc----ccccccccccccchhHHHHHHhCCCEEEE
Confidence 457899999999999999999976 246999999986311000 00000000111112335689999999999
Q ss_pred cCCCCCCCCCCcccc-----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 718 GPTTPIIGEGDEEAN-----------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~-----------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
++.+| .|.+.+. .......+.|+.++++|+.+++.++.+||+++|+|+||++++++|+..|+.++|
T Consensus 94 ~d~RG---~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a 170 (381)
T d1mpxa2 94 QDVRG---KYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170 (381)
T ss_dssp EECTT---STTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEE
T ss_pred EecCc---cCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccce
Confidence 66654 4443221 111234689999999999999888889999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCccc--------------------------ccchhhh----------------------------
Q 002164 787 GIARSGAYNRTLTPFGFQN--------------------------EDRTLWE---------------------------- 812 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~--------------------------~~~~~~~---------------------------- 812 (958)
+|+.+|+.|.......+.. .....+.
T Consensus 171 ~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
T d1mpxa2 171 AVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTE 250 (381)
T ss_dssp EEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHH
T ss_pred eeeeccccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhh
Confidence 9999998875432111000 0000000
Q ss_pred ---cHHHHHhcCccc--ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCccC-------
Q 002164 813 ---ATSTYVEMSPFM--SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG---HGALCRLVILPFESHGY------- 877 (958)
Q Consensus 813 ---~~~~~~~~sp~~--~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~---~g~~~~~~~~p~~~H~~------- 877 (958)
....+...++.. ...++++|+|+++|..|..+. ..+...++.++. .+.+.++++-|. +|.-
T Consensus 251 ~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~---~~~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~ 326 (381)
T d1mpxa2 251 HAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDM---WGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSA 326 (381)
T ss_dssp TCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCS---SHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSE
T ss_pred CCCccchhhhcCchhhhhhccccCceEEEeccccCCcc---ccHHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCc
Confidence 001122233322 345689999999999998764 445566666654 457899999987 7742
Q ss_pred ------CCcccHHHHHHHHHHHHHHhhccC
Q 002164 878 ------AARESIMHVLWETDRWLQKYCVSN 901 (958)
Q Consensus 878 ------~~~~~~~~~~~~i~~fl~~~l~~~ 901 (958)
........+...+++||++||++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~ 356 (381)
T d1mpxa2 327 LGALNFEGDTARQFRHDVLRPFFDQYLVDG 356 (381)
T ss_dssp ETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CCccccccchhhhhHHHHHHHHHHHHhCCC
Confidence 111123344556799999999864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.81 E-value=1.7e-18 Score=182.13 Aligned_cols=258 Identities=13% Similarity=0.075 Sum_probs=168.4
Q ss_pred eeecCC--CCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 194 VTWSQD--GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 194 ~~wSPD--G~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..+||| |++|+|++ ..+||++++++|+.++||..+.. ...++|||||+.|+|+.......
T Consensus 4 ~~~sPdi~G~~v~f~~----------~~dl~~~d~~~g~~~~Lt~~~~~-----~~~p~~SPDG~~iaf~~~~~~~~--- 65 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC----------CDDLWEHDLKSGSTRKIVSNLGV-----INNARFFPDGRKIAIRVMRGSSL--- 65 (281)
T ss_dssp CCEEEEEETTEEEEEE----------TTEEEEEETTTCCEEEEECSSSE-----EEEEEECTTSSEEEEEEEESTTC---
T ss_pred cccCCCCCCCEEEEEe----------CCcEEEEECCCCCEEEEecCCCc-----ccCEEECCCCCEEEEEEeeCCCC---
Confidence 357999 99999986 44799999999999999987664 56899999999999983211100
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-c-------cccccccCCC
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-A-------VYTSLDPSPD 342 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~-------~~~~~~~SpD 342 (958)
...+||++++ +|+.++|+.. . ....+.||||
T Consensus 66 ----------------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spd 105 (281)
T d1k32a2 66 ----------------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD 105 (281)
T ss_dssp ----------------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT
T ss_pred ----------------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCC
Confidence 2357999999 8899998764 1 2346689999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccC
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 422 (958)
|+.|+|+....+.. ....+.+++.+++..+..... .....|.+||..+++.......
T Consensus 106 g~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 106 GNLIISTDAMQPFS-------SMTCLYRVENDGINFVPLNLG----------------PATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCEEEEECTTSSST-------TCCEEEEEEGGGTEEEECCSC----------------SCSEEEEETTEEEEEESCSCCT
T ss_pred CCEEEEEEccCCCc-------cceeeeeecCCCceeEEecCC----------------ccceeeecCCCeEEEeeccccc
Confidence 99999987553321 123566777777766554332 2345688888877775332221
Q ss_pred CCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
.......... ....... .......++........+.++++ .+++.....+ ..+||.++++++ +.+.++...
T Consensus 163 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~l~~~d~~g~--~~~~lt~~~ 233 (281)
T d1k32a2 163 HWKGYRGGTR-GKIWIEV---NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG-FGQIYSTDLDGK--DLRKHTSFT 233 (281)
T ss_dssp TSTTCCSTTC-CEEEEEE---ETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS-SCEEEEEETTSC--SCEECCCCC
T ss_pred eeeeeccCCc-ceeeeec---cccceeeccCCccccceeeeecc--ccceeccccc-ccceEEEeCCCC--ceEEeecCC
Confidence 1111111111 1222221 23334444444455556777765 5666655544 378999999985 455565432
Q ss_pred CccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
.. + ...|||||+.|+|... ..||++|+++|+.++|....
T Consensus 234 ~~--~------~~~~SpDG~~I~f~~~----------------------~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 234 DY--Y------PRHLNTDGRRILFSKG----------------------GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp SS--C------EEEEEESSSCEEEEET----------------------TEEEEECTTTCCEEECCCCC
T ss_pred Cc--c------cccCcCCCCEEEEEeC----------------------CEEEEEECCCCCEEEeccCC
Confidence 21 1 1469999999999751 15999999999999997544
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.80 E-value=4.7e-18 Score=170.72 Aligned_cols=213 Identities=17% Similarity=0.161 Sum_probs=162.7
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
++.|+..+| +|++++..|+. .+.|++|++||.|...++ .........++.|+++||.++.
T Consensus 2 ev~i~g~~G-~Le~~~~~~~~------~~~~~~l~~Hp~p~~GG~----------~~~~~~~~~a~~l~~~G~~~lr--- 61 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGT----------MNNQIVYQLFYLFQKRGFTTLR--- 61 (218)
T ss_dssp EEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCC----------TTSHHHHHHHHHHHHTTCEEEE---
T ss_pred cEEEeCCCc-cEEEEEeCCCC------CCCCEEEEECCCcCcCCc----------CCcHHHHHHHHHHHhcCeeEEE---
Confidence 367888888 89998764432 236899999997532211 1111122456678899999999
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC
Q 002164 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
++++|.|.+.+.........+|..++++|+..+...+ .++.++|+|+||.+++.++.+.+ ...+++++++.....
T Consensus 62 fn~RG~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~--- 136 (218)
T d2i3da1 62 FNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY--- 136 (218)
T ss_dssp ECCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS---
T ss_pred EecCccCCCccccccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc---
Confidence 7778888888776777888999999999999886543 47999999999999999998884 567777777653311
Q ss_pred CCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC-CCcEEEEEeCCCCccCCC
Q 002164 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH-GALCRLVILPFESHGYAA 879 (958)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-g~~~~~~~~p~~~H~~~~ 879 (958)
+...+..+..|.|++||+.|..++ .....++++.++.. +...+++++||++|.|.
T Consensus 137 ---------------------~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~- 192 (218)
T d2i3da1 137 ---------------------DFSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN- 192 (218)
T ss_dssp ---------------------CCTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT-
T ss_pred ---------------------chhhccccCCCceeeecccceecC--hHHHHHHHHHHhhccCCCccEEEeCCCCCCCc-
Confidence 112234457899999999999999 99999999999864 56789999999999985
Q ss_pred cccHHHHHHHHHHHHHHhhccCCC
Q 002164 880 RESIMHVLWETDRWLQKYCVSNTA 903 (958)
Q Consensus 880 ~~~~~~~~~~i~~fl~~~l~~~~~ 903 (958)
.....+.+.+.+||+++|.....
T Consensus 193 -g~~~~l~~~v~~~l~~~l~~~~~ 215 (218)
T d2i3da1 193 -GKVDELMGECEDYLDRRLNGELV 215 (218)
T ss_dssp -TCHHHHHHHHHHHHHHHHTTCSS
T ss_pred -CCHHHHHHHHHHHHHHhcCCCCC
Confidence 34577889999999999976543
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.80 E-value=3e-18 Score=189.43 Aligned_cols=253 Identities=19% Similarity=0.198 Sum_probs=173.0
Q ss_pred cEEEEEEEeC-----CCe--EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCccc------------------------
Q 002164 638 QKELIKYQRK-----DGV--QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDA------------------------ 686 (958)
Q Consensus 638 ~~~~~~~~~~-----dg~--~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~------------------------ 686 (958)
..|.+.+++. ||+ .|++.+|+|+. .+++|+|+..+.-.......
T Consensus 22 ~re~v~v~~~~dt~rDG~~d~l~~di~rP~~-----~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (405)
T d1lnsa3 22 EREVLWVESPVDSEQRGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVE 96 (405)
T ss_dssp EEEEEEEECSCCTTCSSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCC
T ss_pred eEeEEEEeCCCCCCCCCCEeEEEEEEEccCC-----CCCceEEEEeCCcCCCCccccccccccccccccccccccccccc
Confidence 3466666644 899 69999999975 23599999876632100000
Q ss_pred -------------CCcccCCC-CCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHH
Q 002164 687 -------------AGQVRGSP-NEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 687 -------------~~~~~~~~-~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~ 751 (958)
.......+ .....+.....++|+++||+|+.++ .+|.|.|.+.. .+...+.+|..++|+|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D---~RG~g~S~G~~~~~~~~e~~D~~~~IeWl~ 173 (405)
T d1lnsa3 97 QKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVA---GVGTRSSDGFQTSGDYQQIYSMTAVIDWLN 173 (405)
T ss_dssp CCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEEC---CTTSTTSCSCCCTTSHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccchHHHHhCCCEEEEEC---CCCCCCCCCccccCChhhhhhHHHHHHHHH
Confidence 00000000 1111223355678999999999954 45666665532 344678899999999998
Q ss_pred HcCCCCC--------------CcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCC---------CCCCccccc-
Q 002164 752 RRGVAHP--------------SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---------TPFGFQNED- 807 (958)
Q Consensus 752 ~~~~~d~--------------~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---------~~~~~~~~~- 807 (958)
++..+++ .||+++|.||||++++.+|+..|+.++|+|..+++.|+.. ....+....
T Consensus 174 ~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~ 253 (405)
T d1lnsa3 174 GRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDL 253 (405)
T ss_dssp TSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCH
T ss_pred hcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhh
Confidence 7543322 4899999999999999999999999999999998876310 000000000
Q ss_pred ---------c---------------------------hhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 808 ---------R---------------------------TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 808 ---------~---------------------------~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
. ......+.+.+.+++..+++|++|+|+++|..|..|+ +.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~--~~~~ 331 (405)
T d1lnsa3 254 DVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQA 331 (405)
T ss_dssp HHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHH
T ss_pred hhhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCC--HHHH
Confidence 0 0000113456678888999999999999999999998 8999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhccCC
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (958)
.++|++++ .+.+.++++-|+ +|.........++.+.+++||++||++..
T Consensus 332 ~~~y~al~-~~~~~~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ 380 (405)
T d1lnsa3 332 YNFWKALP-EGHAKHAFLHRG-AHIYMNSWQSIDFSETINAYFVAKLLDRD 380 (405)
T ss_dssp HHHHHHSC-TTCCEEEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH-hCCCcEEEEeCC-CCCCCcccccchHHHHHHHHHHHHhCCCC
Confidence 99999996 467889988886 88753333334557788999999998754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=8.6e-18 Score=176.65 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=164.9
Q ss_pred CceecCC--CCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCc
Q 002164 113 ALSFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (958)
Q Consensus 113 ~~~~SPD--G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~ 190 (958)
.+.+||| |++|||++.+ +||++++.+ ++.++||.. ...
T Consensus 3 ~~~~sPdi~G~~v~f~~~~----------------------------------dl~~~d~~~----g~~~~Lt~~--~~~ 42 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD----------------------------------DLWEHDLKS----GSTRKIVSN--LGV 42 (281)
T ss_dssp CCCEEEEEETTEEEEEETT----------------------------------EEEEEETTT----CCEEEEECS--SSE
T ss_pred CcccCCCCCCCEEEEEeCC----------------------------------cEEEEECCC----CCEEEEecC--CCc
Confidence 4578999 9999999874 899999955 778899753 257
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc--cccccceEEecCCeEEEEEecCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL--NAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~--~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
+..|+|||||++|||+.... ......+||++++.+|+.++||..+.... ......+.|+|||+.|+|+.......
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~---~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 119 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRG---SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 119 (281)
T ss_dssp EEEEEECTTSSEEEEEEEES---TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred ccCEEECCCCCEEEEEEeeC---CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc
Confidence 88999999999999987533 22335689999999999999987654211 11134788999999999982211110
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCcEEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~ 347 (958)
....++.++. ++..+..... .....|++||+.++
T Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 154 (281)
T d1k32a2 120 -------------------------------------------SMTCLYRVENDGINFVPLNLG--PATHILFADGRRVI 154 (281)
T ss_dssp -------------------------------------------TCCEEEEEEGGGTEEEECCSC--SCSEEEEETTEEEE
T ss_pred -------------------------------------------cceeeeeecCCCceeEEecCC--ccceeeecCCCeEE
Confidence 2234667777 5555555432 23456788888888
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
+............. .......+..........++.... ....+.+++| .+++..+
T Consensus 155 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~~~~~--------- 209 (281)
T d1k32a2 155 GRNTFELPHWKGYR-GGTRGKIWIEVNSGAFKKIVDMST-------------HVSSPVIVGH--RIYFITD--------- 209 (281)
T ss_dssp EESCSCCTTSTTCC-STTCCEEEEEEETTEEEEEECCSS-------------CCEEEEEETT--EEEEEEC---------
T ss_pred Eeeccccceeeeec-cCCcceeeeeccccceeeccCCcc-------------ccceeeeecc--ccceecc---------
Confidence 77654332111111 111123333344444444433221 2234556655 3444321
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
......||++++ +|++.++|+.... .....|||||+.|+|... .+||+++++++
T Consensus 210 -~~~~~~l~~~d~---~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g 263 (281)
T d1k32a2 210 -IDGFGQIYSTDL---DGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTE 263 (281)
T ss_dssp -TTSSCEEEEEET---TSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTC
T ss_pred -cccccceEEEeC---CCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCC
Confidence 134567999995 8888888875432 234579999999999752 36999999986
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.79 E-value=8.3e-19 Score=180.81 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=141.3
Q ss_pred EEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002164 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (958)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~ 732 (958)
...+|+|++ .+.|+||++|||+|..++.. .+ ...++.|+++||+|+.++|+...
T Consensus 51 ~lDiy~P~~------~~~P~vv~iHGG~w~~g~~~--------~~----~~~a~~l~~~G~~Vv~~~YRl~p-------- 104 (261)
T d2pbla1 51 KFDLFLPEG------TPVGLFVFVHGGYWMAFDKS--------SW----SHLAVGALSKGWAVAMPSYELCP-------- 104 (261)
T ss_dssp EEEEECCSS------SCSEEEEEECCSTTTSCCGG--------GC----GGGGHHHHHTTEEEEEECCCCTT--------
T ss_pred EEEEeccCC------CCCCeEEEECCCCCccCChh--------Hh----hhHHHHHhcCCceeecccccccc--------
Confidence 336788864 24799999999976543211 11 13356889999999998886332
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CceeEEEEeccCCCCCCCCCCcccc
Q 002164 733 DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP------HLFCCGIARSGAYNRTLTPFGFQNE 806 (958)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (958)
...++..++|+.++++|+.++. ++||+|+|||+||++|++++.... ..+++++.++|+++.... .....
T Consensus 105 ~~~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 179 (261)
T d2pbla1 105 EVRISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPL--LRTSM 179 (261)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGG--GGSTT
T ss_pred cccCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchh--hhhhh
Confidence 2235788999999999999984 479999999999999988776542 358899999998875322 11122
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002164 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (958)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~ 876 (958)
......+++.+...||+.++.+.++|+||+||++|..++ ..++++++++|+ ++.+.+|+++|.
T Consensus 180 ~~~~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~--~~qs~~~~~~l~-----~~~~~~~~~~HF 242 (261)
T d2pbla1 180 NEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEKHHF 242 (261)
T ss_dssp HHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTCCTT
T ss_pred cccccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchH--HHHHHHHHHHhC-----CCceEeCCCCch
Confidence 223334567788899999999999999999999999887 899999999985 477889999993
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.3e-18 Score=185.52 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=156.5
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl 716 (958)
..+.++++..+| .+.+.+|.|+. +.|+||++|||.|..++ ... ....+..+++ .||+|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-------~~P~il~iHGGg~~~g~--------~~~----~~~~~~~l~~~~g~~Vv 114 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-------DSPVLVYYHGGGFVICS--------IES----HDALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-------SEEEEEEECCSTTTSCC--------TGG----GHHHHHHHHHHHTSEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-------CceEEEEEcCCCCccCC--------hhh----hhhhhhhhhhcCCcEEE
Confidence 467788888776 79999999953 36999999999755432 111 1234455554 699999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEE
Q 002164 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA----PHLFCCGIA 789 (958)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~----p~~~~a~v~ 789 (958)
.++|+...+ ..++..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+. .....+.++
T Consensus 115 ~v~Yrlap~--------~~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l 186 (311)
T d1jjia_ 115 SVDYRLAPE--------HKFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEECCCTTT--------SCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Eeccccccc--------cccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeee
Confidence 988864433 33467788999999999885 358999999999999999998876542 245788888
Q ss_pred eccCCCCCCCCCCccc-------ccchhhh--------cH--HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 790 RSGAYNRTLTPFGFQN-------EDRTLWE--------AT--STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 790 ~~~~~~~~~~~~~~~~-------~~~~~~~--------~~--~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
+.|..+.......... .....+. .. ......+|+....+..+|+||+||+.|.. ..++.
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l----~d~~~ 262 (311)
T d1jjia_ 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL----RDEGE 262 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT----HHHHH
T ss_pred ecceeeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC----hHHHH
Confidence 8887764432110000 0000000 00 00112366665555567999999999954 57899
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHH
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWL 894 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~----~~~~~~~~~i~~fl 894 (958)
+++++|++.|+++++++|||++|.|... +...+++++|.+||
T Consensus 263 ~~~~~L~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 263 VFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999986422 23456677777776
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=2.5e-18 Score=176.19 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=141.7
Q ss_pred cEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEE
Q 002164 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (958)
Q Consensus 638 ~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~ 717 (958)
+.|++++ .|. ......|.+ +.|+||++||...... .+ ...+..|+++||+|++
T Consensus 4 ~~~~~~l---~g~--~~~~~~p~~-------~~~~vl~lHG~~~~~~-----------~~----~~~~~~la~~G~~V~~ 56 (238)
T d1ufoa_ 4 RTERLTL---AGL--SVLARIPEA-------PKALLLALHGLQGSKE-----------HI----LALLPGYAERGFLLLA 56 (238)
T ss_dssp EEEEEEE---TTE--EEEEEEESS-------CCEEEEEECCTTCCHH-----------HH----HHTSTTTGGGTEEEEE
T ss_pred EEEEEEE---CCE--EEEecCCCC-------CCeEEEEeCCCCCCHH-----------HH----HHHHHHHHHCCCEEEE
Confidence 3455555 453 344555643 3799999999642111 11 1223467889999999
Q ss_pred cCCCCCCCCCCcccc------hhhHHH----HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 718 GPTTPIIGEGDEEAN------DRFVEQ----LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 718 ~~~~~~~G~G~~~~~------~~~~~~----~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
+|. +|+|.+... ..+... ...++.++..++...+.+++++++++|+|+||++++.+++++|+ ++++
T Consensus 57 ~D~---~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~ 132 (238)
T d1ufoa_ 57 FDA---PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGV 132 (238)
T ss_dssp CCC---TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCE
T ss_pred ecC---CCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcc-hhhe
Confidence 555 455544221 111222 23333334444444556778899999999999999999999976 5555
Q ss_pred EEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC-CCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCC--c
Q 002164 788 IARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--L 864 (958)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~--~ 864 (958)
++..+......... ...........+.+.++.....+ .++|+|++||++|..|| ++++.+++++|+..+. .
T Consensus 133 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~ 206 (238)
T d1ufoa_ 133 LAFIGSGFPMKLPQ----GQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGR 206 (238)
T ss_dssp EEESCCSSCCCCCT----TCCCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCC
T ss_pred eeeeeecccccccc----ccccccccccchhhhhhhhhhhhhcCCCeEEEEcCCCCccC--HHHHHHHHHHHHhcCCCce
Confidence 55544433211111 11111122233445566655444 46899999999999999 9999999999998875 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 865 ~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
+++.++||++|.++ .+.+..+.+||.+||..
T Consensus 207 ~~~~~~~g~gH~~~-----~~~~~~~~~f~~~~l~~ 237 (238)
T d1ufoa_ 207 LARFVEEGAGHTLT-----PLMARVGLAFLEHWLEA 237 (238)
T ss_dssp EEEEEETTCCSSCC-----HHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCccC-----HHHHHHHHHHHHHHhcC
Confidence 78889999999985 23467788999999853
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=5.3e-18 Score=184.87 Aligned_cols=299 Identities=10% Similarity=0.035 Sum_probs=190.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|++++.+ ++ ..|++|++.+ +..++++.. ..
T Consensus 44 ~v~~~~~spDg~~l~~~~~~----------------------~g---------~~v~v~d~~~----~~~~~~~~~--~~ 86 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTR----------------------EG---------DFLGIYDYRT----GKAEKFEEN--LG 86 (360)
T ss_dssp CEEEEEECSSSEEEEEEEET----------------------TE---------EEEEEEETTT----CCEEECCCC--CC
T ss_pred CEEEEEECCCCCEEEEEEcC----------------------CC---------CEEEEEECCC----CcEEEeeCC--Cc
Confidence 56789999999999998864 10 2589999855 666666543 34
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|||||++|++... ...++++++++++..++....... +..++|+|||++|++........
T Consensus 87 ~v~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~la~~~~~~~~~- 152 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERSREAM----ITDFTISDNSRFIAYGFPLKHGE- 152 (360)
T ss_dssp SEEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEECSSSC----CCCEEECTTSCEEEEEEEECSST-
T ss_pred eEEeeeecccccccceecc---------ccccccccccccceeeeeeccccc----ccchhhccceeeeeeeccccccc-
Confidence 6888999999999999763 668999999999887776544432 56899999999999873322211
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
... ....+++++++ +++...++.. .....+.|||||++|+
T Consensus 153 ------------------------------~~~--------~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 194 (360)
T d1k32a3 153 ------------------------------TDG--------YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 194 (360)
T ss_dssp ------------------------------TCS--------CCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ------------------------------eee--------ccccceeeeccccCceeeecccccccccccccCCCCEEE
Confidence 000 03356888899 8888888776 6667889999999999
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCc--------eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGI--------FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~--------~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
+.+.+. .+.+|+.... ....+... ......+.|++||+.++.....
T Consensus 195 ~~s~~~-------------~~~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~~~~ 248 (360)
T d1k32a3 195 YLSYRS-------------LDPSPDRVVLNFSFEVVSKPFVIPLI-------------PGSPNPTKLVPRSMTSEAGEYD 248 (360)
T ss_dssp EEESCC-------------CCCEECSSSSCEECCSCBEEEEEESS-------------TTCCCGGGCCCGGGSCCCCCCC
T ss_pred EEeCCC-------------ceEcccccccceeeccccceEEEecc-------------cCccccceECCCcCccccccee
Confidence 988543 3444544321 11111111 1233456788988876542000
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 499 (958)
. ......++.+++ .++..+.+...+.....+.++.++....+..... ....|+++++.++ +...+.
T Consensus 249 -------~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~--~~~~~~ 314 (360)
T d1k32a3 249 -------L-NDMYKRSSPINV---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKTR--KVTEVK 314 (360)
T ss_dssp -------C-TTGGGGCEECSC---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTTC--CEEEEE
T ss_pred -------e-cccccceeeccc---CcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCCC--eEEEec
Confidence 0 011234565553 5556666655554444455555554332222222 2257888888874 323332
Q ss_pred ccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
.. +.. ++|||||++|++...+ ..|++||+++|+..+..
T Consensus 315 ~~----v~~------~~~SpDG~~l~~~~~D---------------------g~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 315 NN----LTD------LRLSADRKTVMVRKDD---------------------GKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EE----EEE------EEECTTSCEEEEEETT---------------------SCEEEEESSCTTSCEEC
T ss_pred CC----cCE------EEECCCCCEEEEEECC---------------------CeEEEEECCCCCcceEE
Confidence 21 222 7899999999987632 25999999887765443
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=2.2e-17 Score=164.31 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=137.1
Q ss_pred EEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcc----
Q 002164 655 TLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE---- 730 (958)
Q Consensus 655 ~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~---- 730 (958)
.+|.|.. +.++|+||++||+.. +...+ ...+..+ ..++.|++++.....+.+...
T Consensus 4 ~i~~~~~-----~~~~P~vi~lHG~g~-----------~~~~~----~~~~~~l-~~~~~vv~p~~~~~~~~~~~~~~~~ 62 (202)
T d2h1ia1 4 HVFQKGK-----DTSKPVLLLLHGTGG-----------NELDL----LPLAEIV-DSEASVLSVRGNVLENGMPRFFRRL 62 (202)
T ss_dssp EEEECCS-----CTTSCEEEEECCTTC-----------CTTTT----HHHHHHH-HTTSCEEEECCSEEETTEEESSCEE
T ss_pred ccCCCCC-----CCCCCEEEEECCCCC-----------CHHHH----HHHHHHh-ccCCceeeecccccCCCCccccccC
Confidence 3566643 334799999999531 11112 1234344 467888875442111111110
Q ss_pred ----cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccc
Q 002164 731 ----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE 806 (958)
Q Consensus 731 ----~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~ 806 (958)
..........+++...++++.++..+|++||+++|+|+||.+++.++.++|++++++++.+|.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~--------- 133 (202)
T d2h1ia1 63 AEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR--------- 133 (202)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS---------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc---------
Confidence 0112234456778888888888888999999999999999999999999999999999998864321
Q ss_pred cchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHH
Q 002164 807 DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (958)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~ 886 (958)
+.........|++++||++|.+|| ++++++++++|+..|.++++..||+ +|.+. .+.
T Consensus 134 ---------------~~~~~~~~~~~~~i~~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~ 190 (202)
T d2h1ia1 134 ---------------GMQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTMHWENR-GHQLT-----MGE 190 (202)
T ss_dssp ---------------SCCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHH
T ss_pred ---------------cccccccccchhhcccccCCCccC--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHH
Confidence 111223346899999999999999 9999999999999999999999997 89885 345
Q ss_pred HHHHHHHHHHh
Q 002164 887 LWETDRWLQKY 897 (958)
Q Consensus 887 ~~~i~~fl~~~ 897 (958)
++.+.+||++.
T Consensus 191 ~~~~~~wl~k~ 201 (202)
T d2h1ia1 191 VEKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77899999875
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.76 E-value=1.3e-17 Score=172.60 Aligned_cols=210 Identities=17% Similarity=0.091 Sum_probs=135.2
Q ss_pred CCCCcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC
Q 002164 634 LASLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (958)
Q Consensus 634 ~~~~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (958)
+...+.+.+++.+. +|.++++++|+|+++++++ ++|+||++||++.....+ .............+...+
T Consensus 17 ~~~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~--~~Pvvv~lHG~g~~~~~~--------~~~~~~~~~~~~~~~~~~ 86 (255)
T d1jjfa_ 17 VPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSENDW--------FEGGGRANVIADNLIAEG 86 (255)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTTTT--------TTTTTCHHHHHHHHHHTT
T ss_pred CCceEEEEEEEEecCCCCEEEEEEEeCCCCCCCC--CCcEEEEEecCCCChHHh--------hhhhHHHHHHHHHHHhhc
Confidence 33456788888765 7899999999999997765 499999999975322111 011111111222333333
Q ss_pred ----cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc--CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 713 ----FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR--GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 713 ----~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~--~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
+.+.......... . ............+.+.+.++.++ ..+|+++++++|+|+||++++.++.++|++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~ 162 (255)
T d1jjfa_ 87 KIKPLIIVTPNTNAAGP-G---IADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAY 162 (255)
T ss_dssp SSCCCEEEEECCCCCCT-T---CSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSE
T ss_pred cCCcceeeecccccccc-c---ccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccE
Confidence 3344322211111 1 11111122223333445555554 347889999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
+++++|..+..... ...........+...|+++.||++|..++ ..++++++|+++|++++
T Consensus 163 v~~~sg~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~G~~D~~~~----~~~~~~~~L~~~g~~~~ 222 (255)
T d1jjfa_ 163 IGPISAAPNTYPNE----------------RLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNINHV 222 (255)
T ss_dssp EEEESCCTTSCCHH----------------HHCTTTTHHHHHHCSEEEEEEETTCTTHH----HHHHHHHHHHHTTCCCE
T ss_pred EEEEccCcCCcccc----------------cccccHHHHhhccCCcceEEeCCCCCCch----HHHHHHHHHHHCCCCEE
Confidence 99999865432110 00011112222335799999999998754 57789999999999999
Q ss_pred EEEeCCCCccC
Q 002164 867 LVILPFESHGY 877 (958)
Q Consensus 867 ~~~~p~~~H~~ 877 (958)
+.++++++|.+
T Consensus 223 ~~~~~~ggH~~ 233 (255)
T d1jjfa_ 223 YWLIQGGGHDF 233 (255)
T ss_dssp EEEETTCCSSH
T ss_pred EEEECCCCcCH
Confidence 99999999986
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.76 E-value=1.2e-17 Score=178.25 Aligned_cols=233 Identities=17% Similarity=0.164 Sum_probs=154.4
Q ss_pred CcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc-EE
Q 002164 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF-AI 715 (958)
Q Consensus 637 ~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~-~v 715 (958)
...+.++++. +|.++.+.+|+|++. ++++|+||++|||.|..++ ... .......++.+|+ .|
T Consensus 44 ~~~~~~~~~~-~g~~i~~~~y~P~~~----~~~~Pvvv~iHGGg~~~g~--------~~~----~~~~~~~~a~~~~~~v 106 (308)
T d1u4na_ 44 AEVREFDMDL-PGRTLKVRMYRPEGV----EPPYPALVYYHGGGWVVGD--------LET----HDPVCRVLAKDGRAVV 106 (308)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEECTTC----CSSEEEEEEECCSTTTSCC--------TTT----THHHHHHHHHHHTSEE
T ss_pred CcEEEEEEec-CCceEEEEEEecccc----CCCCCEEEEEecCeeeeec--------ccc----ccchhhhhhhcccccc
Confidence 3467777776 889999999999864 2359999999999654332 111 2244567777664 56
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEE
Q 002164 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGI 788 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v 788 (958)
+.++|+-. +...+....+|+.++++|+.++. .+|++||+++|+|+||++++.++.... ..+.+..
T Consensus 107 ~~v~Yrl~--------p~~~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 178 (308)
T d1u4na_ 107 FSVDYRLA--------PEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQL 178 (308)
T ss_dssp EEECCCCT--------TTSCTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred cccccccc--------cccccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccc
Confidence 66677422 22344677889999999999853 589999999999999999998887542 2345555
Q ss_pred EeccCCCCCCCCCCc----------ccccchhhh--------cHHHHHhcCcccccCCCC-CCEEEEeeCCCCCCCCChH
Q 002164 789 ARSGAYNRTLTPFGF----------QNEDRTLWE--------ATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 789 ~~~~~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~ 849 (958)
...+..+........ .......+. ........++........ .|+||+||+.|.. ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l----~~ 254 (308)
T d1u4na_ 179 LIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL----RD 254 (308)
T ss_dssp EESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT----HH
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc----hH
Confidence 555554322111000 000000000 000011122222222222 5899999999954 57
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHhh
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHGYAA----RESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~----~~~~~~~~~~i~~fl~~~l 898 (958)
++.+++++|++.|+++++++|||++|+|.. .+...+.++.+.+||++.|
T Consensus 255 ~~~~~~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999998632 2334577888999998876
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.74 E-value=3.2e-17 Score=180.25 Aligned_cols=242 Identities=15% Similarity=0.109 Sum_probs=153.8
Q ss_pred CCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 636 ~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
.++.|.+.+++.||..|..+.+..........++.|+||++||.+..+..+..+.. ....+..|+++||.|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~---------~~sla~~L~~~Gy~V 94 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLP---------NNSLAFILADAGYDV 94 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCT---------TTCHHHHHHHTTCEE
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCc---------cchHHHHHHHCCCEE
Confidence 45678889999999988776543211122234557999999997544322111111 123577899999999
Q ss_pred EEcCCCCCCCCCCcccch------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002164 716 LGGPTTPIIGEGDEEAND------------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~------------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (958)
++ .|.+|+|.+..+. .+......|+.++++++++.-. .+++.++||||||.+++.++.++|+.
T Consensus 95 ~~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~ 169 (377)
T d1k8qa_ 95 WL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKL 169 (377)
T ss_dssp EE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHH
T ss_pred EE---EcCCCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhh
Confidence 99 6667888774321 1223457789999999987632 35899999999999999999999877
Q ss_pred eeEEEEec---cCCCCCCCCC--C-------------------ccc-------------c--c--------------chh
Q 002164 784 FCCGIARS---GAYNRTLTPF--G-------------------FQN-------------E--D--------------RTL 810 (958)
Q Consensus 784 ~~a~v~~~---~~~~~~~~~~--~-------------------~~~-------------~--~--------------~~~ 810 (958)
++.++... +......... . ... . . ...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (377)
T d1k8qa_ 170 AKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTM 249 (377)
T ss_dssp HTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGG
T ss_pred hhhceeEeeccccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcc
Confidence 65554433 2211100000 0 000 0 0 000
Q ss_pred hhc---HHHHH-----------------------------------------hcCcccccCCCCCCEEEEeeCCCCCCCC
Q 002164 811 WEA---TSTYV-----------------------------------------EMSPFMSANKLKKPILLVHGEEDNNSGT 846 (958)
Q Consensus 811 ~~~---~~~~~-----------------------------------------~~sp~~~~~~~~~P~Lii~G~~D~~v~~ 846 (958)
..+ ...+. ...+...+.++++|+|+++|++|..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~- 328 (377)
T d1k8qa_ 250 NLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD- 328 (377)
T ss_dssp GSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC-
T ss_pred cccHHHhhhhhhcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccC-
Confidence 000 00000 001222456789999999999999998
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHH
Q 002164 847 LTMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~--~~~~~~~~~~~~~i~~fl~~ 896 (958)
++..+++.+.++. .++++++|++||. +...+...+++..|++||+.
T Consensus 329 -~~~~~~l~~~lp~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 329 -PHDVDLLLSKLPN---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp -HHHHHHHHTTCTT---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCC---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 8888887766543 3678899999996 23455678889999999974
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.74 E-value=2.6e-17 Score=180.91 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=162.6
Q ss_pred CCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCC--CCcCcHHHHHHHHC
Q 002164 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF--PRIGSTSVLLWLAR 711 (958)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~ 711 (958)
......+.+.|+++||++|.+.||+|++ .+++|+||+.|+..... .....+..+ .......+..|+++
T Consensus 23 ~~~~~~~~v~ipmrDG~~L~~~v~~P~~-----~~~~P~il~~tpY~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~ 92 (385)
T d2b9va2 23 QRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTPYNAKG-----RANRVPNALTMREVLPQGDDVFVEG 92 (385)
T ss_dssp CCSEEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHH-----HTCSSTTCSSHHHHSCGGGHHHHHT
T ss_pred CCCCeEeEEEEECCCCCEEEEEEEEcCC-----CCceeEEEEEccCCCCC-----ccccCCcccccccccchHHHHHHhC
Confidence 3334567899999999999999999975 34699999976521100 000001111 01112345689999
Q ss_pred CcEEEEcCCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002164 712 GFAILGGPTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (958)
||+|+.++.+|..+.+..+.. ..+.....+|..++|+|+.+++..+..||+++|+||||++++.+|+..|+.
T Consensus 93 Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~ 172 (385)
T d2b9va2 93 GYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPA 172 (385)
T ss_dssp TCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTT
T ss_pred CcEEEEEcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCc
Confidence 999999666544332222110 112234689999999999999877888999999999999999999999899
Q ss_pred eeEEEEeccCCCCCCCCCCccc--------------------------ccchhhh-------------------c-----
Q 002164 784 FCCGIARSGAYNRTLTPFGFQN--------------------------EDRTLWE-------------------A----- 813 (958)
Q Consensus 784 ~~a~v~~~~~~~~~~~~~~~~~--------------------------~~~~~~~-------------------~----- 813 (958)
++|++..++..+.......+.. .....+. .
T Consensus 173 l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 252 (385)
T d2b9va2 173 LKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQR 252 (385)
T ss_dssp EEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHH
T ss_pred ceEEEEecccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhh
Confidence 9999999887764321100000 0000000 0
Q ss_pred -------HHHHHhcCcccc--cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhC--CCcEEEEEeCCCCccCCC---
Q 002164 814 -------TSTYVEMSPFMS--ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH--GALCRLVILPFESHGYAA--- 879 (958)
Q Consensus 814 -------~~~~~~~sp~~~--~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~--g~~~~~~~~p~~~H~~~~--- 879 (958)
.+.+...++... ..++.+|+|++.|..|... ...+.+.+++++.. +.+.++++-|. +|....
T Consensus 253 ~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~---~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~ 328 (385)
T d2b9va2 253 MHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQED---MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNG 328 (385)
T ss_dssp HHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC---SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCC
T ss_pred hccCcccchhhhhcChhHHHhhccccCceEEEEecccCCc---ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCccccc
Confidence 011222333322 2356789999999887654 35677788888765 46789988886 664210
Q ss_pred ---------cc-cHHHHHHHHHHHHHHhhccCC
Q 002164 880 ---------RE-SIMHVLWETDRWLQKYCVSNT 902 (958)
Q Consensus 880 ---------~~-~~~~~~~~i~~fl~~~l~~~~ 902 (958)
.+ ....+.+.+++||++||++..
T Consensus 329 ~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~ 361 (385)
T d2b9va2 329 STLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGS 361 (385)
T ss_dssp SEETTEECSSCHHHHHHHHTHHHHHHHHHSTTC
T ss_pred ccccccccCcccchhhHHHHHHHHHHHHcCCCC
Confidence 11 223445567999999998754
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.71 E-value=3.1e-17 Score=168.68 Aligned_cols=231 Identities=12% Similarity=-0.000 Sum_probs=144.4
Q ss_pred CCCCCcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC
Q 002164 633 QLASLQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711 (958)
Q Consensus 633 ~~~~~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 711 (958)
+....+++.+++.+. .|.++.+++|+|+++++. ++|+||++||+++... . ........+.++
T Consensus 9 ~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~~~---~~Pvvv~lhG~~~~~~--------~------~~~~~l~~l~~~ 71 (246)
T d3c8da2 9 QAPEIPAKEIIWKSERLKNSRRVWIFTTGDVTAE---ERPLAVLLDGEFWAQS--------M------PVWPVLTSLTHR 71 (246)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEEEEEC-----C---CCCEEEESSHHHHHHT--------S------CCHHHHHHHHHT
T ss_pred CCCCCCcEEEEEECCCCCCEEEEEEEECCCCCCC---CCCEEEEeCCcchhcc--------C------cHHHHHHHHHHh
Confidence 334456678888875 488999999999988643 4999999999642110 0 011234456666
Q ss_pred C----cEEEEcCCCCCCCCCCc-ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 002164 712 G----FAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (958)
Q Consensus 712 G----~~vl~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (958)
| ++++.++.......... .....+.....+++...++... ...+|+++++|+|+|+||++|++++.++|++|++
T Consensus 72 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a 150 (246)
T d3c8da2 72 QQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFGC 150 (246)
T ss_dssp TSSCSCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCE
T ss_pred CCCCceEEeecccccccccccccCccHHHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhcE
Confidence 5 33444322100000000 0112222333333333332211 2347889999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 787 GIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 787 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
+++++|.++...... .....+....+.....+...|+++.+|+.|..+ ..++++|+++|+.+|++++
T Consensus 151 ~~~~sg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~~~l~~~L~~~g~~~~ 217 (246)
T d3c8da2 151 VLSQSGSYWWPHRGG----------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIF 217 (246)
T ss_dssp EEEESCCTTTTCTTS----------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEE
T ss_pred EEcCCcccccccCCc----------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch---hHHHHHHHHHHHHCCCCEE
Confidence 999999876432211 011122333455566677889999999999865 5788999999999999999
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 867 LVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 867 ~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+.++|| ||.+. .....+...+.||-+.|
T Consensus 218 ~~~~~G-gH~~~---~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 218 WRQVDG-GHDAL---CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp EEEESC-CSCHH---HHHHHHHHHHHHHHGGG
T ss_pred EEEeCC-CCChH---HHHHHHHHHHHHHHHhh
Confidence 999998 89752 23344455555555443
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.2e-18 Score=170.63 Aligned_cols=197 Identities=15% Similarity=0.069 Sum_probs=129.9
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
++-+++ .+|.+++...+.|.. ....|.||++||.+..... |. ....+..|+++||.|++
T Consensus 7 ~e~~i~-v~G~~i~y~~~~~~~-----~~~~~~vvllHG~~~~~~~-----------w~--~~~~~~~la~~gy~via-- 65 (208)
T d1imja_ 7 REGTIQ-VQGQALFFREALPGS-----GQARFSVLLLHGIRFSSET-----------WQ--NLGTLHRLAQAGYRAVA-- 65 (208)
T ss_dssp CCCCEE-ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCHHH-----------HH--HHTHHHHHHHTTCEEEE--
T ss_pred eEEEEE-ECCEEEEEEEecCCC-----CCCCCeEEEECCCCCChhH-----------Hh--hhHHHHHHHHcCCeEEE--
Confidence 333444 389999988888753 1236778899996422110 10 00124578999999999
Q ss_pred CCCCCCCCCcccchh---hH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCC
Q 002164 720 TTPIIGEGDEEANDR---FV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~---~~-~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (958)
.|.+|+|.+..... +. ....+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+++|...
T Consensus 66 -~D~~G~G~S~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~ 138 (208)
T d1imja_ 66 -IDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICT 138 (208)
T ss_dssp -ECCTTSGGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCG
T ss_pred -eecccccCCCCCCcccccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccc
Confidence 55567777754321 11 11122333333322 336889999999999999999999999999999987532
Q ss_pred CCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002164 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (958)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H 875 (958)
..+ ......++++|+|++||++|..+| .. .+. ++ .-...++.++++++|
T Consensus 139 ~~~-----------------------~~~~~~~i~~P~Lii~G~~D~~~~--~~--~~~---~~-~~~~~~~~~i~~~gH 187 (208)
T d1imja_ 139 DKI-----------------------NAANYASVKTPALIVYGDQDPMGQ--TS--FEH---LK-QLPNHRVLIMKGAGH 187 (208)
T ss_dssp GGS-----------------------CHHHHHTCCSCEEEEEETTCHHHH--HH--HHH---HT-TSSSEEEEEETTCCT
T ss_pred ccc-----------------------ccccccccccccccccCCcCcCCc--HH--HHH---HH-hCCCCeEEEECCCCC
Confidence 100 011234578999999999998765 33 222 22 234588999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHH
Q 002164 876 GYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~ 896 (958)
... .++.+.+.+.+.+||+.
T Consensus 188 ~~~-~~~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 188 PCY-LDKPEEWHTGLLDFLQG 207 (208)
T ss_dssp THH-HHCHHHHHHHHHHHHHT
T ss_pred chh-hhCHHHHHHHHHHHHhc
Confidence 753 45667888999999874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.6e-15 Score=163.85 Aligned_cols=268 Identities=10% Similarity=0.010 Sum_probs=174.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..++ +.|.||++...+.......+....+..
T Consensus 53 ~V~~v~fs~~g~~latg~d----------------------------------g~V~iWd~~~~~~~~~~~~~~~~~h~~ 98 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGGK----------------------------------GCVKVWDISHPGNKSPVSQLDCLNRDN 98 (337)
T ss_dssp CCCEEEECSSSSEEEEECB----------------------------------SEEEEEETTSTTCCSCSEEEECSCTTS
T ss_pred cEEEEEECCCCCEEEEEEC----------------------------------CEEEEEEccCCcccceeEEeeecCCCC
Confidence 5788999999999998664 368999996533222222222112234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc--CCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF--QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt--~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
.+...+|||||+.|+.... ...|.+|++.....+... ..... .+....|+||+..++...
T Consensus 99 ~I~~v~~s~dg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~----- 160 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGE---------ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCC----- 160 (337)
T ss_dssp BEEEEEECTTSSEEEEEES---------SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEE-----
T ss_pred cEEEEEEcCCCCEEEEeec---------ccccccccccccccccccccccccc----cccccccccccccccccc-----
Confidence 6889999999999987542 457888887754433221 11111 156788999999888651
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC--ccccccccCCCCc
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEK 344 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDGk 344 (958)
....+..+++ +++....... ..+..++|+++|+
T Consensus 161 --------------------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 161 --------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp --------------------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred --------------------------------------------cccccccccccccccccccccccccccccccccccc
Confidence 2234777787 6654443332 6678889999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.+++...+ +.+.+||+..+......... ..+..+.|+|+++.++..
T Consensus 197 ~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-------------~~i~~l~~~~~~~~l~~~-------- 242 (337)
T d1gxra_ 197 KLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQIFSLGYCPTGEWLAVG-------- 242 (337)
T ss_dssp EEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECTTSSEEEEE--------
T ss_pred cccccccc-------------ccccccccccceeecccccc-------------cceEEEEEccccccccee--------
Confidence 99987633 48999999865432221111 345678999999988763
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCc
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 504 (958)
...+.+.+++. ..++..........+..+.|+|||+.|+..+.++ .|.+++...+ +....... ..
T Consensus 243 -----~~d~~i~i~d~---~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg----~i~iwd~~~~--~~~~~~~~-~~ 307 (337)
T d1gxra_ 243 -----MESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYG--ASIFQSKE-SS 307 (337)
T ss_dssp -----ETTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC--CEEEEEEC-SS
T ss_pred -----ccccccccccc---cccccccccccccccceEEECCCCCEEEEEeCCC----eEEEEECCCC--CEEEEccC-CC
Confidence 34567889985 5555444555566778899999999888765432 3556666664 32333322 23
Q ss_pred cccCCCCCCceEeccCCceEEEEe
Q 002164 505 DVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.+.. ++|||||++|+...
T Consensus 308 ~v~~------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 308 SVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp CEEE------EEECTTSCEEEEEE
T ss_pred CEEE------EEEeCCCCEEEEEe
Confidence 3333 78999999988765
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=2.4e-17 Score=171.63 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=122.4
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
+.|+||++|||.|..... +...+.......+..++++||.|+.++|+...+. .++..++|+.++++
T Consensus 30 ~~~~vv~iHGGg~~~~~~------~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~--------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 30 TREAVIYIHGGAWNDPEN------TPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CCEEEEEECCSTTTCTTC------CGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccCCCC------CcchHHHHHHHHHHHHHhCCeEEEEeccccCcch--------hhhHHHHhhhhhhh
Confidence 479999999986532210 0111111112233445678999999887644322 23567899999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----------------ceeEEEEeccCCCCCCCCCCcc-------
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----------------LFCCGIARSGAYNRTLTPFGFQ------- 804 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----------------~~~a~v~~~~~~~~~~~~~~~~------- 804 (958)
|+.++. ++++|+|+|+|+||.+++.++...++ .+.+.+...+.++.........
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 999974 66799999999999999998875432 2455555555443210000000
Q ss_pred ---cccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 805 ---NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 805 ---~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
......|..............+.++.+|+|++||++|.+|| +.++.+|+++|++.|++++++++++++|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~ 247 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLGLHND 247 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCCSGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccC--HHHHHHHHHHHHHCCCCEEEEEECCCCchh
Confidence 00000000000000000112234567899999999999999 999999999999999999999999999975
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3.9e-17 Score=170.19 Aligned_cols=206 Identities=12% Similarity=0.067 Sum_probs=142.4
Q ss_pred CcEEEEEEEeCCCe-EEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH-HHHHHHCCcE
Q 002164 637 LQKELIKYQRKDGV-QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS-VLLWLARGFA 714 (958)
Q Consensus 637 ~~~~~~~~~~~dg~-~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~G~~ 714 (958)
.+.+.++|++.||. ++.++|++|+++++.+ ++|+|+++||++... ...... .+..+.+|++
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~--~yPvi~~lhG~~~~~---------------~~~~~~~~~~~~~~~~~ 73 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMD---------------RLDDELLKQLSEKTPPV 73 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHHHH---------------HCCHHHHHHHTTSCCCE
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCC--CceEEEEecCcchhh---------------hHHHHHHHHHHhcCCCe
Confidence 35678899999985 7999999999987765 499999999963211 001111 2233458998
Q ss_pred EEEcCCCCCCCCCCcccc----------------------hhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH
Q 002164 715 ILGGPTTPIIGEGDEEAN----------------------DRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAF 771 (958)
Q Consensus 715 vl~~~~~~~~G~G~~~~~----------------------~~~~~-~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~ 771 (958)
|+.+.+.+..+++..... ..... .......+++.++.++..+|+++++|+|+|+||+
T Consensus 74 vV~v~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~ 153 (265)
T d2gzsa1 74 IVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGL 153 (265)
T ss_dssp EEEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHH
T ss_pred EEEecCCCCCcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHH
Confidence 887555444332211000 00011 1112233456677777788999999999999999
Q ss_pred HHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCC--------CCC
Q 002164 772 MTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEE--------DNN 843 (958)
Q Consensus 772 ~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~--------D~~ 843 (958)
+++.++.+. +.|.++++.+|... |.....+...++.......+.|+++.+|+. |..
T Consensus 154 ~a~~~~~~~-~~f~~~~a~s~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~ 217 (265)
T d2gzsa1 154 FVLDSWLSS-SYFRSYYSASPSLG---------------RGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAV 217 (265)
T ss_dssp HHHHHHHHC-SSCSEEEEESGGGS---------------TTHHHHHHHHHTSCTTTTTTCEEEEEECCC-----------
T ss_pred HHHHHHHcC-cccCEEEEECCccc---------------ccchhhhhccccccccccCCCcEEEEcCCcccccccccccc
Confidence 999988775 67888888887532 233344445556666667778999999977 667
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002164 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (958)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~ 877 (958)
++ +.++++++++|+++|+++++.+|||++|+.
T Consensus 218 ~~--~~~~~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 218 GV--LSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp CH--HHHHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred hh--HHHHHHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 77 889999999999999999999999999974
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.2e-15 Score=154.51 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHH
Q 002164 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (958)
...+.+...++.+.+. .+|++||+++|+|+||.+|+.++.++|++++++|+++|...... .+
T Consensus 91 ~~~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~---~~-------------- 152 (229)
T d1fj2a_ 91 QAAENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA---SF-------------- 152 (229)
T ss_dssp HHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG---GS--------------
T ss_pred HHHHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccccccc---cc--------------
Confidence 3344445555555444 48999999999999999999999999999999999987422100 00
Q ss_pred HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh--CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG--HGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~--~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
...+ ....+.++|+|++||++|.+|| ++.++++++.|+. .+.++++..|++.+|.+. .+.++.+.+||+
T Consensus 153 -~~~~-~~~~~~~~Pvli~hG~~D~~vp--~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~ 223 (229)
T d1fj2a_ 153 -PQGP-IGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFID 223 (229)
T ss_dssp -CSSC-CCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred -cccc-cccccccCceeEEEcCCCCeeC--HHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHH
Confidence 0001 1112235899999999999999 9999999999987 467899999999999875 344678999999
Q ss_pred Hhh
Q 002164 896 KYC 898 (958)
Q Consensus 896 ~~l 898 (958)
++|
T Consensus 224 ~~L 226 (229)
T d1fj2a_ 224 KLL 226 (229)
T ss_dssp HHS
T ss_pred hHC
Confidence 998
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.68 E-value=1.5e-15 Score=151.42 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=124.7
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCc--------ccchhhHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE--------EANDRFVEQLV 740 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~--------~~~~~~~~~~~ 740 (958)
..|+||++||.+.. .+.+ ...+..++ .++.++.++.......+.. ..........+
T Consensus 22 ~~p~vv~lHG~g~~-----------~~~~----~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (209)
T d3b5ea1 22 SRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAET 85 (209)
T ss_dssp CCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHH
T ss_pred CCCEEEEEcCCCCC-----------HHHH----HHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHH
Confidence 48999999996421 1222 12344444 4677776543211111101 01122234556
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhc
Q 002164 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM 820 (958)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (958)
.++.+.|+++.++..+|++||+|+|+|+||++++.++.++|++|+++++++|.....
T Consensus 86 ~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~----------------------- 142 (209)
T d3b5ea1 86 AAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD----------------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS-----------------------
T ss_pred HHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc-----------------------
Confidence 777788888888877899999999999999999999999999999999999854211
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.......++|+|++||++|.+++ ..+.++.+.|+..|.++++.+|++ +|.+. ....+.+.+||.
T Consensus 143 -~~~~~~~~~~p~~~~~G~~D~~~~---~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 -HVPATDLAGIRTLIIAGAADETYG---PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp -SCCCCCCTTCEEEEEEETTCTTTG---GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred -cccccccccchheeeeccCCCccC---HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 111122346899999999999985 567889999999999999999998 79985 233456677774
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=5.6e-16 Score=163.27 Aligned_cols=244 Identities=13% Similarity=0.075 Sum_probs=158.2
Q ss_pred CcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
++++.+++.+. .|..+...++.|. +++|+|+++||++...... .|.. .....+.+.+.|+++
T Consensus 7 ~~v~~~~~~s~~~~r~~~~~v~~p~-------~~~Pvl~llhG~~~~~d~~---------~~~~-~~~~~~~~~~~~~~~ 69 (288)
T d1sfra_ 7 LPVEYLQVPSPSMGRDIKVQFQSGG-------ANSPALYLLDGLRAQDDFS---------GWDI-NTPAFEWYDQSGLSV 69 (288)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCS-------TTBCEEEEECCTTCCSSSC---------HHHH-HCCHHHHHTTSSCEE
T ss_pred CEEEEEEEECCCCCcEEEEEEeCCC-------CCceEEEEcCCCCCCCcch---------hhhh-hccHHHHHHhCCCEE
Confidence 34567777755 6788888887763 2599999999954211000 0100 012345667789999
Q ss_pred EEcCCCCCCCCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 002164 716 LGGPTTPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (958)
Q Consensus 716 l~~~~~~~~G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (958)
+.++......++...... ........-+.+.+.+|.++..+|++|++|+|+|+||++|+.++.++|++|+++++
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~ 149 (288)
T d1sfra_ 70 VMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGA 149 (288)
T ss_dssp EEECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEE
T ss_pred EEeccCCCCCCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEE
Confidence 987664433222211100 00111222345677888888889999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCcc----------cccchhh--hcHHHHHhcCcccccCCC---CCCEEEEeeCCCCCCCCC-------
Q 002164 790 RSGAYNRTLTPFGFQ----------NEDRTLW--EATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL------- 847 (958)
Q Consensus 790 ~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~------- 847 (958)
++|.++......... ......+ .+...+...+|..++++. +.++++.+|..|..++..
T Consensus 150 ~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~ 229 (288)
T d1sfra_ 150 MSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKF 229 (288)
T ss_dssp ESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHH
T ss_pred ecCcccccccccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccch
Confidence 999877443211000 0000011 111234556676655443 468999999999876510
Q ss_pred -----hHHHHHHHHHHHhCCCcEEEEEeCCC-CccCCCcccHHHHHHHHHHHHHHhhcc
Q 002164 848 -----TMQSDRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQKYCVS 900 (958)
Q Consensus 848 -----~~~~~~~~~~l~~~g~~~~~~~~p~~-~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (958)
..+++++.++|+..|++.++..+++. +|.+. .....+...+.||.+.|+.
T Consensus 230 ~e~~~~~~~~~l~~~l~~~g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg~ 285 (288)
T d1sfra_ 230 LEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGA 285 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHCCCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcCC
Confidence 14678899999999999999999865 69752 2344566778899988864
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=4e-16 Score=163.93 Aligned_cols=216 Identities=19% Similarity=0.178 Sum_probs=139.8
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
...||.+++...+-.++ ..|+||++||++..+. .| ......++++||.|++ .|.+
T Consensus 7 ~~~~g~~i~y~~~g~~~-------~~~~iv~lHG~~g~~~-----------~~----~~~~~~~~~~~~~vi~---~D~~ 61 (290)
T d1mtza_ 7 AKVNGIYIYYKLCKAPE-------EKAKLMTMHGGPGMSH-----------DY----LLSLRDMTKEGITVLF---YDQF 61 (290)
T ss_dssp EEETTEEEEEEEECCSS-------CSEEEEEECCTTTCCS-----------GG----GGGGGGGGGGTEEEEE---ECCT
T ss_pred EEECCEEEEEEEcCCCC-------CCCeEEEECCCCCchH-----------HH----HHHHHHHHHCCCEEEE---EeCC
Confidence 34599999877775321 1588999999753221 11 1223356788999999 6667
Q ss_pred CCCCcccch--h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC--
Q 002164 725 GEGDEEAND--R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-- 799 (958)
Q Consensus 725 G~G~~~~~~--~-~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-- 799 (958)
|+|.+.... . ......+|+.+.++.+.. .+++.++||||||.+++.+|.++|++++++|..+++......
T Consensus 62 G~G~S~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 136 (290)
T d1mtza_ 62 GCGRSEEPDQSKFTIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVK 136 (290)
T ss_dssp TSTTSCCCCGGGCSHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHH
T ss_pred CCccccccccccccccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcccchh
Confidence 888875432 1 245566777766665532 258999999999999999999999999999998875321000
Q ss_pred ---------C-------------CCcccc-c--------------chhh-----hcHHH------H--------------
Q 002164 800 ---------P-------------FGFQNE-D--------------RTLW-----EATST------Y-------------- 817 (958)
Q Consensus 800 ---------~-------------~~~~~~-~--------------~~~~-----~~~~~------~-------------- 817 (958)
. ..+... . ...+ ..... +
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (290)
T d1mtza_ 137 EMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGT 216 (290)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCST
T ss_pred hhhhhhhhhhHHHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhh
Confidence 0 000000 0 0000 00000 0
Q ss_pred -HhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 818 -VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 818 -~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
...+......++++|+|+++|++|..+ +..+.++.+.++. +++++++++||... .++.+.+.+.|.+||.+
T Consensus 217 ~~~~~~~~~~~~i~~P~l~i~G~~D~~~---~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 288 (290)
T d1mtza_ 217 IKDWDITDKISAIKIPTLITVGEYDEVT---PNVARVIHEKIAG----SELHVFRDCSHLTM-WEDREGYNKLLSDFILK 288 (290)
T ss_dssp TTTCBCTTTGGGCCSCEEEEEETTCSSC---HHHHHHHHHHSTT----CEEEEETTCCSCHH-HHSHHHHHHHHHHHHHT
T ss_pred hhcccHHHHhhcccceEEEEEeCCCCCC---HHHHHHHHHHCCC----CEEEEECCCCCchH-HhCHHHHHHHHHHHHHH
Confidence 011122345567899999999999876 4667777666543 58899999999864 45677888999999998
Q ss_pred hh
Q 002164 897 YC 898 (958)
Q Consensus 897 ~l 898 (958)
|+
T Consensus 289 h~ 290 (290)
T d1mtza_ 289 HL 290 (290)
T ss_dssp CC
T ss_pred hC
Confidence 75
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=4e-15 Score=157.23 Aligned_cols=212 Identities=14% Similarity=0.076 Sum_probs=137.4
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+|+...+-+++ .|.||++||.+... ..+...+...|+++||.|++ .|.+|+
T Consensus 7 ~g~~~i~y~~~G~~~--------~p~vvl~HG~~~~~--------------~~~~~~~~~~l~~~g~~vi~---~D~~G~ 61 (297)
T d1q0ra_ 7 SGDVELWSDDFGDPA--------DPALLLVMGGNLSA--------------LGWPDEFARRLADGGLHVIR---YDHRDT 61 (297)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCCG--------------GGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred ECCEEEEEEEecCCC--------CCEEEEECCCCcCh--------------hHHHHHHHHHHHhCCCEEEE---EeCCCC
Confidence 377888877774332 57899999964221 11223456678899999999 566788
Q ss_pred CCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCC--
Q 002164 727 GDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-- 799 (958)
Q Consensus 727 G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-- 799 (958)
|.+.... ........|+.+.++.+ +.+++.++|||+||.+++.+|.++|++++++|++++.......
T Consensus 62 G~S~~~~~~~~~~~~~~~~~d~~~ll~~l------~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~ 135 (297)
T d1q0ra_ 62 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 135 (297)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred cccccccccccccccchhhhhhccccccc------cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchh
Confidence 8774321 12445556666655443 3468999999999999999999999999999998765321100
Q ss_pred -----------CCCccccc----------------------------------chhhhcH-------HHHH---------
Q 002164 800 -----------PFGFQNED----------------------------------RTLWEAT-------STYV--------- 818 (958)
Q Consensus 800 -----------~~~~~~~~----------------------------------~~~~~~~-------~~~~--------- 818 (958)
........ ...+... ..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T d1q0ra_ 136 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 215 (297)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhh
Confidence 00000000 0000000 0000
Q ss_pred ---------hcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002164 819 ---------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (958)
Q Consensus 819 ---------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~ 889 (958)
..+....+.++++|+|+++|++|..+| +..++++.+.++ ..+++++|++||.+. .+....+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~l~~i~~Pvlvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~ 288 (297)
T d1q0ra_ 216 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLIP----TARLAEIPGMGHALP-SSVHGPLAEV 288 (297)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTST----TEEEEEETTCCSSCC-GGGHHHHHHH
T ss_pred hhhhhhhhccccchhhhhccCCceEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCcch-hhCHHHHHHH
Confidence 001123456789999999999999998 888887776654 468999999999874 5566666667
Q ss_pred HHHHHHH
Q 002164 890 TDRWLQK 896 (958)
Q Consensus 890 i~~fl~~ 896 (958)
|.+||+.
T Consensus 289 i~~~l~~ 295 (297)
T d1q0ra_ 289 ILAHTRS 295 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.66 E-value=3.3e-15 Score=155.68 Aligned_cols=214 Identities=14% Similarity=0.172 Sum_probs=134.2
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~ 723 (958)
+++.||.+++...+ + . -|.||++||.+... ..| ...+..|+++||.|++ .|.
T Consensus 3 ~~t~dG~~l~y~~~---G-----~--g~~ivlvHG~~~~~-----------~~~----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW---G-----Q--GRPVVFIHGWPLNG-----------DAW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEE---C-----S--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECcCCCEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEE---EeC
Confidence 67889999886654 1 1 35578899964211 111 2345678899999999 566
Q ss_pred CCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEeccCCCCCCCC
Q 002164 724 IGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTLTP 800 (958)
Q Consensus 724 ~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~~~ 800 (958)
+|+|.+.... ........|+.+.++.+ ..+++.++|||+||.+++.+++ +.|+++++++.+++........
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~ 128 (274)
T d1a8qa_ 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCcccccccccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhh
Confidence 6778775432 23345556666665543 3368999999999998887655 5588999999887643211100
Q ss_pred ----CCcccc------------------------------cc--------hhh------------hcHHHHHhcCccccc
Q 002164 801 ----FGFQNE------------------------------DR--------TLW------------EATSTYVEMSPFMSA 826 (958)
Q Consensus 801 ----~~~~~~------------------------------~~--------~~~------------~~~~~~~~~sp~~~~ 826 (958)
...... .. ..+ .....+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T d1a8qa_ 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccchhhHHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHH
Confidence 000000 00 000 000111222333456
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC-cccHHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA-RESIMHVLWETDRWLQK 896 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~-~~~~~~~~~~i~~fl~~ 896 (958)
.++++|+|+++|++|..+| ++...+..+.+. ..++++++|++||.... .++.+.+.+.+.+||++
T Consensus 209 ~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred HhccceeeeeccCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 7899999999999999998 766544443331 13689999999998542 35567788889999864
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.66 E-value=3.1e-15 Score=155.90 Aligned_cols=215 Identities=14% Similarity=0.156 Sum_probs=139.3
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
++++.||.+|+...+-|++ .|.||++||.+.... .| ...+..|+++||.|++ .|
T Consensus 2 ~i~~~dG~~l~y~~~G~~~--------~~~vv~lHG~~~~~~-----------~~----~~~~~~l~~~g~~vi~---~D 55 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLSAD-----------DW----DNQMLFFLSHGYRVIA---HD 55 (275)
T ss_dssp EEECTTSCEEEEEEESCTT--------SCEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEecCCCEEEEEEecCCC--------CCeEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---Ee
Confidence 5788999999999987643 356888999642211 11 2346678899999999 55
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh-HHHHHHHHHHhCCCceeEEEEeccCCCCCCC
Q 002164 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY-GAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~-GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
.+|+|.+.... .......+|+.+.++.+ +.+++.++|+|+ ||.++..++.++|++++++|.+++.......
T Consensus 56 ~~G~G~s~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 129 (275)
T d1a88a_ 56 RRGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVK 129 (275)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBC
T ss_pred cccccccccccccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccccccccc
Confidence 56777765422 23456677777777765 235778888886 6666677788999999999998764321110
Q ss_pred C-CCcc----------------------------------cccc--------hhhh------------cHHHHHhcCccc
Q 002164 800 P-FGFQ----------------------------------NEDR--------TLWE------------ATSTYVEMSPFM 824 (958)
Q Consensus 800 ~-~~~~----------------------------------~~~~--------~~~~------------~~~~~~~~sp~~ 824 (958)
. .... .... ..+. ....+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (275)
T d1a88a_ 130 SDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTD 209 (275)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhH
Confidence 0 0000 0000 0000 001111222233
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.+.++++|+|+++|++|..+| .....+.++++- ..+++++++++||.+. .++.+.+.+.|.+||+
T Consensus 210 ~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 210 DLKRIDVPVLVAHGTDDQVVP--YADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHHCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred HHHhhccccceeecCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHc
Confidence 456789999999999999998 666554444332 2479999999999864 4567888899999986
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=4.9e-15 Score=147.02 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHh
Q 002164 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (958)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (958)
+.++...++..... +|+++++++|+|+||.+++.++...|+.+.++++.++......
T Consensus 79 ~~~~~~~l~~~~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~--------------------- 135 (203)
T d2r8ba1 79 TGKMADFIKANREH--YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 135 (203)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHhhhc--CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc---------------------
Confidence 44444444443333 6788999999999999999999999999999999998643111
Q ss_pred cCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.........|++++||++|.+|| ++++++++++|+..|+++++.+|++ +|.+. .+.++.+.+||.+|
T Consensus 136 ---~~~~~~~~~~~~i~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 136 ---KISPAKPTRRVLITAGERDPICP--VQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLAAY 202 (203)
T ss_dssp ---CCCCCCTTCEEEEEEETTCTTSC--HHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHGGG
T ss_pred ---ccccccccchhhccccCCCCccc--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHhc
Confidence 01112345799999999999999 9999999999999999999999997 79985 23467789999875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.63 E-value=6.6e-14 Score=149.00 Aligned_cols=238 Identities=13% Similarity=0.060 Sum_probs=152.7
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+++||||+.|||.... .+.+|++.. + ...+.++++. ..+
T Consensus 21 ~~~a~~~~g~~l~~~~~~----------------------------------~v~i~~~~~-~--~~~~~~~~H~--~~v 61 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNGT----------------------------------SVYTVPVGS-L--TDTEIYTEHS--HQT 61 (311)
T ss_dssp CCCEECTTSSEEEEEETT----------------------------------EEEEEETTC-S--SCCEEECCCS--SCE
T ss_pred EEEEEcCCCCEEEEEeCC----------------------------------EEEEEECCC-C--ceeEEEcCCC--CCE
Confidence 467899999999998763 688999854 2 2344555433 578
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeec--cCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....|||||++||... ....|.+|++.+++.... ...... .+..++|+|||+.|+.....
T Consensus 62 ~~~~~sp~g~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s~d~~~l~~~~~~----- 123 (311)
T d1nr0a1 62 TVAKTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFSG----PVKDISWDSESKRIAAVGEG----- 123 (311)
T ss_dssp EEEEECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSSS----CEEEEEECTTSCEEEEEECC-----
T ss_pred EEEEEeCCCCeEeccc---------cCceEeeeeeeccccccccccccccC----cccccccccccccccccccc-----
Confidence 9999999999998754 256788889887653211 111122 27789999999998876211
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....+.++++ +++ ...+... ..+..++|+|||+.+
T Consensus 124 ------------------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~ 161 (311)
T d1nr0a1 124 ------------------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 161 (311)
T ss_dssp ------------------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred ------------------------------------------ccccccccccccccccccccccccccccccccccceee
Confidence 1112344555 443 3344433 667889999999986
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+.+... ++.|.+||+++......... ....+..+.|+|||+.++..
T Consensus 162 l~sgs~------------d~~i~i~d~~~~~~~~~~~~------------~~~~i~~v~~~p~~~~l~~~---------- 207 (311)
T d1nr0a1 162 IISGSD------------DNTVAIFEGPPFKFKSTFGE------------HTKFVHSVRYNPDGSLFAST---------- 207 (311)
T ss_dssp EEEEET------------TSCEEEEETTTBEEEEEECC------------CSSCEEEEEECTTSSEEEEE----------
T ss_pred eccccc------------cccccccccccccccccccc------------ccccccccccCccccccccc----------
Confidence 555422 34899999997654432221 11345689999999987763
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEE-------eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+..+.+.+|+. .++.....+. .+...+..++|+|||++|+..+.++ .|.++|+.++
T Consensus 208 ---~~d~~v~~~d~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----~v~iwd~~t~ 270 (311)
T d1nr0a1 208 ---GGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATL 270 (311)
T ss_dssp ---ETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTT
T ss_pred ---ccccccccccc--ccccccccccccccccccccccccccccCCCCCEEEEEeCCC----eEEEEECCCC
Confidence 34567888885 2322222221 1234466789999999888765332 3555666664
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.1e-15 Score=161.48 Aligned_cols=216 Identities=15% Similarity=0.088 Sum_probs=138.8
Q ss_pred EEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCC
Q 002164 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (958)
Q Consensus 642 ~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~ 721 (958)
-.++..||.+|+...+ + + .|+||++||.+.... .| ...+..|+++||.|++ .
T Consensus 14 ~~v~~~~g~~i~y~~~---G-----~--gp~vlllHG~~~~~~-----------~~----~~~~~~L~~~g~~vi~---~ 65 (322)
T d1zd3a2 14 GYVTVKPRVRLHFVEL---G-----S--GPAVCLCHGFPESWY-----------SW----RYQIPALAQAGYRVLA---M 65 (322)
T ss_dssp EEEEEETTEEEEEEEE---C-----C--SSEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---E
T ss_pred eEEEECCCCEEEEEEE---c-----C--CCeEEEECCCCCCHH-----------HH----HHHHHHHHHCCCEEEE---e
Confidence 3456678999886654 2 2 378999999653211 11 2346678899999999 5
Q ss_pred CCCCCCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC
Q 002164 722 PIIGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (958)
Q Consensus 722 ~~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (958)
|.+|+|.+..... .......|+.+.++.+ +.+++.++|||+||.+++.+|.++|++++++|++++.....
T Consensus 66 D~~G~G~S~~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~ 139 (322)
T d1zd3a2 66 DMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 139 (322)
T ss_dssp ECTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCC
T ss_pred ccccccccccccccccccccccchhhhhhhhcc------cccccccccccchHHHHHHHHHhCCccccceEEEccccccc
Confidence 6668887754321 2334445555544433 34689999999999999999999999999999886532110
Q ss_pred CCCCC---------------------------------------------------------cc-c--c----cchhhh-
Q 002164 798 LTPFG---------------------------------------------------------FQ-N--E----DRTLWE- 812 (958)
Q Consensus 798 ~~~~~---------------------------------------------------------~~-~--~----~~~~~~- 812 (958)
..... .. . . .....+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
T d1zd3a2 140 NPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEE 219 (322)
T ss_dssp CSSSCHHHHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHH
T ss_pred ccccchhhhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHH
Confidence 00000 00 0 0 000000
Q ss_pred cH----HH------------------HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 002164 813 AT----ST------------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (958)
Q Consensus 813 ~~----~~------------------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (958)
.. .. ....++.....++++|+|+++|++|..++ ++..+++.+.+. ..+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i 293 (322)
T d1zd3a2 220 EIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWIP----HLKRGHI 293 (322)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTCT----TCEEEEE
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEE
Confidence 00 00 00112223446789999999999999998 777666554433 4688899
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 871 p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+++||... .+...++.+.|.+||+.+-
T Consensus 294 ~~~gH~~~-~e~p~~v~~~i~~FL~~~~ 320 (322)
T d1zd3a2 294 EDCGHWTQ-MDKPTEVNQILIKWLDSDA 320 (322)
T ss_dssp TTCCSCHH-HHSHHHHHHHHHHHHHHHT
T ss_pred CCCCCchH-HhCHHHHHHHHHHHHhhcC
Confidence 99999863 5667788889999999874
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.63 E-value=7.9e-15 Score=153.75 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=128.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAA 746 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~a 746 (958)
-|+||++||.+..... |.... .....++++||.|++ .|.+|+|.+... ........+|+.+.
T Consensus 30 G~~ivllHG~~~~~~~-----------~~~~~-~~l~~~~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~i~~l 94 (283)
T d2rhwa1 30 GETVIMLHGGGPGAGG-----------WSNYY-RNVGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (283)
T ss_dssp SSEEEEECCCSTTCCH-----------HHHHT-TTHHHHHHTTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhH-----------HHHHH-HHHHHHHHCCCEEEE---EeCCCCcccccccccccccchhhhhcccc
Confidence 3678889996432211 11111 112356789999999 566688877442 12233345566665
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCC--CCCCCcc----------ccc-------
Q 002164 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LTPFGFQ----------NED------- 807 (958)
Q Consensus 747 v~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~~~~~~----------~~~------- 807 (958)
++.+ +.+++.++|||+||.+++.++.++|++++++|++++..-.. ...+... ...
T Consensus 95 i~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (283)
T d2rhwa1 95 MDAL------DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (283)
T ss_dssp HHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHH
T ss_pred cccc------cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 5543 33589999999999999999999999999999988642111 0000000 000
Q ss_pred --------c--------hhhh----cHHH------------HHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 808 --------R--------TLWE----ATST------------YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 808 --------~--------~~~~----~~~~------------~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
. ..+. .+.. ....+....+.++++|+|+++|++|..+| ++.+.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~ 246 (283)
T d2rhwa1 169 LQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLL 246 (283)
T ss_dssp HHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred HHHhhcccccCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcC--HHHHHHHH
Confidence 0 0000 0000 01123344566789999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
+.++ .+++++++++||.+. .++.+.+.+.+.+||++
T Consensus 247 ~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 247 WNID----DARLHVFSKCGHWAQ-WEHADEFNRLVIDFLRH 282 (283)
T ss_dssp HHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred HhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHhC
Confidence 7764 379999999999763 45677788888999864
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.62 E-value=1.5e-15 Score=154.08 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=128.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av 747 (958)
.+.||++||.+.. ... ....+..|+++||.|++ .+.+|+|.+... .........++..++
T Consensus 11 ~~~vvliHG~~~~-----------~~~----~~~l~~~L~~~G~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 72 (242)
T d1tqha_ 11 ERAVLLLHGFTGN-----------SAD----VRMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 72 (242)
T ss_dssp SCEEEEECCTTCC-----------THH----HHHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------HHH----HHHHHHHHHHCCCEEEE---EeCCCCccccccccccchhHHHHHHHHHH
Confidence 3567789996321 111 12456788999999999 566788876442 223345556666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC-----c----ccccchhhh------
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG-----F----QNEDRTLWE------ 812 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~-----~----~~~~~~~~~------ 812 (958)
.++...+ .++++++|||+||.+++.++.++|.....++ .++.......... + .........
T Consensus 73 ~~~~~~~---~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (242)
T d1tqha_ 73 EFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM-CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEM 148 (242)
T ss_dssp HHHHHHT---CCCEEEEEETHHHHHHHHHHTTSCCSCEEEE-SCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hhhhhcc---cCceEEEEcchHHHHhhhhcccCcccccccc-cccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHH
Confidence 6665543 3689999999999999999999976543333 2222111000000 0 000000000
Q ss_pred -----------cHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002164 813 -----------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (958)
Q Consensus 813 -----------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~ 881 (958)
.............+..+++|+|+++|++|..+| ++.++++++.++. ..+++++++++||.....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~ 224 (242)
T d1tqha_ 149 EKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLDQ 224 (242)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGST
T ss_pred hhhhhhccchhhcccccccccccccceeccccceeecccCCccC--HHHHHHHHHHcCC--CCcEEEEECCCCCcCcccc
Confidence 000000111234456788999999999999998 8999999887643 3589999999999876555
Q ss_pred cHHHHHHHHHHHHHH
Q 002164 882 SIMHVLWETDRWLQK 896 (958)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (958)
+.+.+.+.+.+||++
T Consensus 225 ~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 225 EKDQLHEDIYAFLES 239 (242)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 678889999999986
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.62 E-value=3e-15 Score=156.91 Aligned_cols=217 Identities=17% Similarity=0.131 Sum_probs=133.9
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
+.++++ ++.++++...-+++ .|+||++||.+... ..+..+. .....| ++||.|++
T Consensus 6 ~~~~~~-~~~~~h~~~~G~~~--------~p~ivllHG~~~~~-----------~~~~~~~-~~~~~L-~~~~~vi~--- 60 (281)
T d1c4xa_ 6 EKRFPS-GTLASHALVAGDPQ--------SPAVVLLHGAGPGA-----------HAASNWR-PIIPDL-AENFFVVA--- 60 (281)
T ss_dssp EEEECC-TTSCEEEEEESCTT--------SCEEEEECCCSTTC-----------CHHHHHG-GGHHHH-HTTSEEEE---
T ss_pred EEEEcc-CCEEEEEEEEecCC--------CCEEEEECCCCCCC-----------cHHHHHH-HHHHHH-hCCCEEEE---
Confidence 344543 55788877765432 58899999953211 0000011 123334 46999999
Q ss_pred CCCCCCCCcccch---hh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 721 TPIIGEGDEEAND---RF----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 721 ~~~~G~G~~~~~~---~~----~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.|.+|+|.+.... .. ....++|+.+.++ +.+ .+++.++||||||.+++.+|.++|++++++|++++.
T Consensus 61 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~i~---~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~ 134 (281)
T d1c4xa_ 61 PDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMN---HFG---IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSV 134 (281)
T ss_dssp ECCTTSTTSCCCSSCCSSHHHHHHHHHHHHHHHHH---HHT---CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred EeCCCCccccccccccccchhhHHHhhhhcccccc---ccc---cccceeccccccccccccccccccccccceEEeccc
Confidence 6667888875421 11 1223333333333 322 258999999999999999999999999999998875
Q ss_pred CCCCCCC-------------------------CCccccc-chh-------h---hcH-------HHHH--------hcCc
Q 002164 794 YNRTLTP-------------------------FGFQNED-RTL-------W---EAT-------STYV--------EMSP 822 (958)
Q Consensus 794 ~~~~~~~-------------------------~~~~~~~-~~~-------~---~~~-------~~~~--------~~sp 822 (958)
....... +.+.... ... + ... ..+. ...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T d1c4xa_ 135 GAPMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIP 214 (281)
T ss_dssp SSCCSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCC
T ss_pred cCccccchhHHHHHHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccc
Confidence 3211100 0000000 000 0 000 0000 0122
Q ss_pred ccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
...+.++++|+|+++|++|..+| ++.++++.+.++ ..+++++|++||... .+..+.+.+.+.+||+
T Consensus 215 ~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 215 PATLGRLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred hhhhhhhccceEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHhC
Confidence 23467889999999999999998 888888877654 368999999999864 5667788888999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.61 E-value=1.2e-13 Score=146.86 Aligned_cols=252 Identities=9% Similarity=0.027 Sum_probs=157.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
....++++|||+.|+|.. ...++++++++++..++....... +..++|+|||++|+...
T Consensus 19 ~~~~~a~~~~g~~l~~~~----------~~~v~i~~~~~~~~~~~~~~H~~~----v~~~~~sp~g~~latg~------- 77 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN----------GTSVYTVPVGSLTDTEIYTEHSHQ----TTVAKTSPSGYYCASGD------- 77 (311)
T ss_dssp CCCCCEECTTSSEEEEEE----------TTEEEEEETTCSSCCEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred CeEEEEEcCCCCEEEEEe----------CCEEEEEECCCCceeEEEcCCCCC----EEEEEEeCCCCeEeccc-------
Confidence 345678999999999975 446899999987665554333322 78999999999998761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--e-eecCCC-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--V-KEIGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~-~~l~~~-~~~~~~~~SpDGk 344 (958)
....|.++++ ++. . ..+... ..+..++|+|||+
T Consensus 78 ------------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 115 (311)
T d1nr0a1 78 ------------------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115 (311)
T ss_dssp ------------------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ------------------------------------------cCceEeeeeeeccccccccccccccCcccccccccccc
Confidence 1234667777 442 1 223333 6778899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
+|+..+... ...+.+|+.+.++. ..+.. ....+..+.|+|||+.++..
T Consensus 116 ~l~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~-------------h~~~v~~v~~~~~~~~~l~s------- 164 (311)
T d1nr0a1 116 RIAAVGEGR-----------ERFGHVFLFDTGTSNGNLTG-------------QARAMNSVDFKPSRPFRIIS------- 164 (311)
T ss_dssp EEEEEECCS-----------SCSEEEEETTTCCBCBCCCC-------------CSSCEEEEEECSSSSCEEEE-------
T ss_pred ccccccccc-----------cccccccccccccccccccc-------------cccccccccccccceeeecc-------
Confidence 998887432 23577888875432 22221 11345788999999976553
Q ss_pred CcccccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 502 (958)
.+..+.|.+|+. .+++. ..+......+..+.|+|||+.|+....++. +.+++...+ .....+...
T Consensus 165 -----gs~d~~i~i~d~---~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~----v~~~d~~~~--~~~~~~~~~ 230 (311)
T d1nr0a1 165 -----GSDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT----IVLYNGVDG--TKTGVFEDD 230 (311)
T ss_dssp -----EETTSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTTC--CEEEECBCT
T ss_pred -----cccccccccccc---cccccccccccccccccccccCcccccccccccccc----ccccccccc--ccccccccc
Confidence 133557889986 33332 222344556778999999998887654432 444454443 222222221
Q ss_pred CccccCCC-CCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecC
Q 002164 503 SEDVYSDP-GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (958)
Q Consensus 503 ~~~~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~ 570 (958)
.....+.. .-..++|+|||++|+....+ ..|++||+++++..+....
T Consensus 231 ~~~~~~h~~~V~~~~~s~~~~~l~tgs~D---------------------g~v~iwd~~t~~~~~~l~~ 278 (311)
T d1nr0a1 231 SLKNVAHSGSVFGLTWSPDGTKIASASAD---------------------KTIKIWNVATLKVEKTIPV 278 (311)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETT---------------------SEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccCCCCCEEEEEeCC---------------------CeEEEEECCCCcEEEEEEC
Confidence 11111000 00127899999998876521 2599999999987665443
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.60 E-value=8.4e-15 Score=152.03 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=133.3
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
+.||.+++.... + + -|.||++||.+... ..+..+. ... ...++||.|++ .|.+|
T Consensus 8 ~~dg~~l~y~~~---G-----~--g~~vvllHG~~~~~-----------~~~~~~~-~~~-~~l~~~~~v~~---~D~~G 61 (268)
T d1j1ia_ 8 NAGGVETRYLEA---G-----K--GQPVILIHGGGAGA-----------ESEGNWR-NVI-PILARHYRVIA---MDMLG 61 (268)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTC-----------CHHHHHT-TTH-HHHTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---c-----C--CCeEEEECCCCCCc-----------cHHHHHH-HHH-HHHhcCCEEEE---Ecccc
Confidence 358999875432 2 2 24588899964211 0000000 112 23367999999 56667
Q ss_pred CCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC---
Q 002164 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP--- 800 (958)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--- 800 (958)
+|.+... .........|+.+.++.+ . + .+++.++|||+||.+++.+|.++|++++++|++++........
T Consensus 62 ~G~S~~~~~~~~~~~~~~~~~~~i~~l---~-~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~ 136 (268)
T d1j1ia_ 62 FGKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL 136 (268)
T ss_dssp STTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC-----
T ss_pred cccccCCccccccccccccchhhHHHh---h-h-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhh
Confidence 8877542 233445566665554432 2 2 2479999999999999999999999999999987642111000
Q ss_pred -----CCccc------------cc----c----hhhhc-------------HHHHHh----cCcccccCCCCCCEEEEee
Q 002164 801 -----FGFQN------------ED----R----TLWEA-------------TSTYVE----MSPFMSANKLKKPILLVHG 838 (958)
Q Consensus 801 -----~~~~~------------~~----~----~~~~~-------------~~~~~~----~sp~~~~~~~~~P~Lii~G 838 (958)
..+.. .. . ..+.. ...+.. ......+.++++|+|+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G 216 (268)
T d1j1ia_ 137 RPIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQG 216 (268)
T ss_dssp -----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEE
T ss_pred hhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEe
Confidence 00000 00 0 00000 000001 1122346788999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++|..+| ++.+.++.+.++ .++++++|++||.+. .++...+.+.+.+||.+
T Consensus 217 ~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 217 KDDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp TTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 9999998 888888777664 379999999999864 56678889999999976
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=2.1e-14 Score=148.84 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=135.2
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
+|.+.||.+|+...+ + + -|.||++||++.... . ....+..|+++||.|++ .+
T Consensus 2 ~f~~~dG~~l~y~~~---G-----~--g~~vv~lHG~~~~~~-----------~----~~~~~~~l~~~g~~vi~---~D 53 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW---G-----S--GKPVLFSHGWLLDAD-----------M----WEYQMEYLSSRGYRTIA---FD 53 (271)
T ss_dssp EEECTTSCEEEEEEE---S-----S--SSEEEEECCTTCCGG-----------G----GHHHHHHHHTTTCEEEE---EC
T ss_pred EEEeECCeEEEEEEE---c-----C--CCeEEEECCCCCCHH-----------H----HHHHHHHHHhCCCEEEE---Ee
Confidence 467789999976544 1 1 245778999642211 1 12345678889999999 56
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH-HHHHhCCCceeEEEEeccCCCCCCC
Q 002164 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA-NLLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~-~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
.+|+|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++ .++.+.|+++++++..++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~ 127 (271)
T d1va4a_ 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred ccccccccccccccccccccccceeeeeec------CCCcceeeccccccccccccccccccceeeEEEeeccccccccc
Confidence 66888775432 22345555555554443 346899999999887665 5566789999999998765432111
Q ss_pred CCCccccc-----------------c-------hhh---------h-------------c-------HHHHHhcCccccc
Q 002164 800 PFGFQNED-----------------R-------TLW---------E-------------A-------TSTYVEMSPFMSA 826 (958)
Q Consensus 800 ~~~~~~~~-----------------~-------~~~---------~-------------~-------~~~~~~~sp~~~~ 826 (958)
...+.... . ..+ . . ...+...+....+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T d1va4a_ 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHH
T ss_pred chhhhhhhhhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhh
Confidence 00000000 0 000 0 0 0111122333345
Q ss_pred CCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.++++|+|+++|++|..+| +....++++.+.. .++++++|++||... .++.+.+.+.|.+||++
T Consensus 208 ~~i~~Pvl~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp HHCCSCEEEEEETTCSSSC--GGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHTC
T ss_pred hhcccceeecccCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 6788999999999999998 8888777766532 368889999999863 45667888888998864
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=3.3e-14 Score=147.70 Aligned_cols=213 Identities=16% Similarity=0.171 Sum_probs=134.6
Q ss_pred EEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC
Q 002164 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (958)
Q Consensus 643 ~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~ 722 (958)
+|++.||.+++.... + + -|.||++||.+... ..| ......|+++||.|++ .|
T Consensus 2 ~f~~~dG~~i~y~~~---G-----~--g~pvvllHG~~~~~-----------~~~----~~~~~~l~~~~~~vi~---~D 53 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW---G-----S--GQPIVFSHGWPLNA-----------DSW----ESQMIFLAAQGYRVIA---HD 53 (273)
T ss_dssp EEECTTSCEEEEEEE---S-----C--SSEEEEECCTTCCG-----------GGG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEeeCCcEEEEEEE---C-----C--CCeEEEECCCCCCH-----------HHH----HHHHHHHHhCCCEEEE---Ee
Confidence 678899999977654 2 1 24567899964221 111 2345678899999999 56
Q ss_pred CCCCCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH-HHHhCCCceeEEEEeccCCCCCCC
Q 002164 723 IIGEGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN-LLAHAPHLFCCGIARSGAYNRTLT 799 (958)
Q Consensus 723 ~~G~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~~~~~~~~~ 799 (958)
.+|+|.+.... .......+|+.+.++.+ +.++..++|+|+||.+++. ++.+.|+++++++.+++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~ 127 (273)
T d1a8sa_ 54 RRGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLK 127 (273)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred chhcCccccccccccccchHHHHHHHHHhc------CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccc
Confidence 66788775432 22445566666665542 3357889999998865555 555678999999888764321110
Q ss_pred CC----Cccc-------------------------------ccc--------hhhh------------cHHHHHhcCccc
Q 002164 800 PF----GFQN-------------------------------EDR--------TLWE------------ATSTYVEMSPFM 824 (958)
Q Consensus 800 ~~----~~~~-------------------------------~~~--------~~~~------------~~~~~~~~sp~~ 824 (958)
.. .... ... ..+. ....+...+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (273)
T d1a8sa_ 128 TEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTE 207 (273)
T ss_dssp CSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhH
Confidence 00 0000 000 0000 001112233344
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.+.++++|+|+++|++|..+| .+...++.+.+.. .++++++|++||... .++.+.+.+.|.+||+
T Consensus 208 ~~~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 208 DLKKIDVPTLVVHGDADQVVP--IEASGIASAALVK---GSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHHTCCSCEEEEEETTCSSSC--STTTHHHHHHHST---TCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred HHHhhccceEEEecCCCCCCC--HHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHcC
Confidence 567889999999999999998 7777777665532 368889999999863 5667788888999885
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=4e-14 Score=149.52 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=145.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDG 188 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~ 188 (958)
.+..++|||||++||..+.+ +.|.+|++.+ +.. +.+.. .+.
T Consensus 14 ~V~~l~~s~dg~~l~s~s~D---------------------------------g~v~vWd~~~----~~~~~~~~~-~h~ 55 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAE---------------------------------GHINSWDIST----GISNRVFPD-VHA 55 (299)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------SCEEEEETTT----CCEEECSSC-SCS
T ss_pred CcEEEEECCCCCEEEEEcCC---------------------------------CeEEEEECCC----CcEEEEEcC-CCC
Confidence 46688999999999987765 4789999954 332 22211 123
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (958)
..+....|+|||+.++... ...+.+++..+........... .....+..++|+|||+.++..
T Consensus 56 ~~v~~v~~~~~g~~~~~~~----------d~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~------- 117 (299)
T d1nr0a2 56 TMITGIKTTSKGDLFTVSW----------DDHLKVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSADGDIAVAA------- 117 (299)
T ss_dssp SCEEEEEECTTSCEEEEET----------TTEEEEECSSSSSSCTTSCCEE-ECSSCEEEEEECTTSSCEEEE-------
T ss_pred CcEEEEEeeccceeecccc----------eeeEEEeccCCccccccccccc-ccccccccccccccccccccc-------
Confidence 4688899999997544321 4577778776543221111000 011114578899999887765
Q ss_pred CCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCCccccccccCCCCcEEEE
Q 002164 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILI 348 (958)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (958)
....+.+++. ++...+........++|+|||+.|+.
T Consensus 118 -------------------------------------------~~~~i~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 118 -------------------------------------------CYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp -------------------------------------------ESSEEEEEET-TEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred -------------------------------------------cccccccccc-cccccccccccccccccccccccccc
Confidence 1123444443 22222222234567789999999988
Q ss_pred EeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccc
Q 002164 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (958)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 428 (958)
...+ +.+.+||++++....+.... ....+..+.|+|||+.++..
T Consensus 154 g~~d-------------g~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~------------ 197 (299)
T d1nr0a2 154 GGQD-------------SKVHVYKLSGASVSEVKTIV-----------HPAEITSVAFSNNGAFLVAT------------ 197 (299)
T ss_dssp EETT-------------SEEEEEEEETTEEEEEEEEE-----------CSSCEEEEEECTTSSEEEEE------------
T ss_pred cccc-------------cccccccccccccccccccc-----------cccccccccccccccccccc------------
Confidence 7633 48999999877654433211 11345688999999987763
Q ss_pred cccCCeEEEEeCCCCCCCCce---EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 429 VTPRDIIYTQQAEPVQGEGPE---ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~---~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+..+.+++|+. .++.... .+..+...+..++|+|+|+.|+..+.++. |+++++..+
T Consensus 198 -~~d~~i~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~----i~iwd~~~~ 256 (299)
T d1nr0a2 198 -DQSRKVIPYSV--ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS----VIVWNMNKP 256 (299)
T ss_dssp -ETTSCEEEEEG--GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTCT
T ss_pred -ccccccccccc--cccccccccccccccccccccccccccccceEEEcCCCE----EEEEECCCC
Confidence 34567888885 1222111 12233455677899999999987765432 444455543
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.60 E-value=6.5e-15 Score=150.97 Aligned_cols=197 Identities=9% Similarity=-0.009 Sum_probs=128.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHH
Q 002164 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAV 747 (958)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av 747 (958)
|.||++||.+.... .| ...+..|+++||.|++ .|.+|+|.+...... ......|+..
T Consensus 3 ~~vvllHG~~~~~~-----------~w----~~~~~~L~~~g~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~-- 62 (258)
T d1xkla_ 3 KHFVLVHGACHGGW-----------SW----YKLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLME-- 62 (258)
T ss_dssp CEEEEECCTTCCGG-----------GG----TTHHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHH--
T ss_pred CcEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---ecCCCCCCCCCCCCCCcchHHHHHHHhh--
Confidence 46778999643211 12 1346688899999999 677788887553221 2333333333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC------------------------Cc
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF------------------------GF 803 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~------------------------~~ 803 (958)
.+.... ...++.++|||+||.+++.++.++|++++.+|.+++......... ..
T Consensus 63 -~~~~~~--~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (258)
T d1xkla_ 63 -LMESLS--ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGS 139 (258)
T ss_dssp -HHHTSC--SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSC
T ss_pred -hhhccc--ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 233332 235899999999999999999999999999999876432111000 00
Q ss_pred cccc------chhh----------h-c--------------HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHH
Q 002164 804 QNED------RTLW----------E-A--------------TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (958)
Q Consensus 804 ~~~~------~~~~----------~-~--------------~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~ 852 (958)
.... .... . . ...+...........+++|+|+++|++|..+| ++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~ 217 (258)
T d1xkla_ 140 PEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQR 217 (258)
T ss_dssp TTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHHH
T ss_pred hhhhcccccccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCC--HHHHH
Confidence 0000 0000 0 0 01111223334455677999999999999998 88888
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
++.+.+.. +++++++++||... .+..+++.+.|.+|+++|
T Consensus 218 ~~~~~~~~----~~~~~i~~~gH~~~-~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 218 WQIDNIGV----TEAIEIKGADHMAM-LCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp HHHHHHCC----SEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHHCCC----CEEEEECCCCCchH-HhCHHHHHHHHHHHHHhc
Confidence 88877643 58899999999863 566788899999999886
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=4.9e-15 Score=144.79 Aligned_cols=180 Identities=12% Similarity=-0.082 Sum_probs=110.0
Q ss_pred EEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002164 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (958)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (958)
.||++||... + ....+....+..|+++||.|+++++ +|.|... ..|. ++++.
T Consensus 3 ~V~~vHG~~~-----------~--~~~~~~~~l~~~L~~~G~~v~~~d~---p~~~~~~---------~~~~---~~~l~ 54 (186)
T d1uxoa_ 3 QVYIIHGYRA-----------S--STNHWFPWLKKRLLADGVQADILNM---PNPLQPR---------LEDW---LDTLS 54 (186)
T ss_dssp EEEEECCTTC-----------C--TTSTTHHHHHHHHHHTTCEEEEECC---SCTTSCC---------HHHH---HHHHH
T ss_pred EEEEECCCCC-----------C--cchhHHHHHHHHHHhCCCEEEEecc---CCCCcch---------HHHH---HHHHH
Confidence 3888999531 1 1112233456788999999999555 4555431 2222 33333
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce--eEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCC
Q 002164 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF--CCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (958)
Q Consensus 752 ~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~--~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 829 (958)
+......+++.|+||||||.+++.++.+.|... .+++..++........... ... .....+.....++
T Consensus 55 ~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~ 124 (186)
T d1uxoa_ 55 LYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQML----DEF------TQGSFDHQKIIES 124 (186)
T ss_dssp TTGGGCCTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGG----GGG------TCSCCCHHHHHHH
T ss_pred HHHhccCCCcEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhhhh----hhh------hcccccccccccC
Confidence 332334578999999999999999999987643 4444444433211110000 000 0000111112234
Q ss_pred CCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHH
Q 002164 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQK 896 (958)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~--~~~~~~~~~i~~fl~~ 896 (958)
.+|+|++||++|.+|| +++++++++.+. .+++++|++||..... .....+.+.+.+||.+
T Consensus 125 ~~p~lvi~g~~D~~vp--~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 125 AKHRAVIASKDDQIVP--FSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp EEEEEEEEETTCSSSC--HHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred CCCEEEEecCCCCCCC--HHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 5899999999999999 999999988772 4899999999976322 2335667777777753
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.59 E-value=5.4e-15 Score=157.80 Aligned_cols=121 Identities=14% Similarity=-0.016 Sum_probs=83.4
Q ss_pred EEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcC
Q 002164 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (958)
Q Consensus 640 ~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~ 719 (958)
+.-.++..||.+++...+-.++ .|.||++||++.... .+. ....+.+.||.|++
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~~--------g~pvvllHG~~g~~~-----------~~~-----~~~~~l~~~~~Vi~-- 65 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGGGC-----------NDK-----MRRFHDPAKYRIVL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTTCC-----------CGG-----GGGGSCTTTEEEEE--
T ss_pred CCCEEEeCCCcEEEEEEecCCC--------CCEEEEECCCCCCcc-----------chH-----HHhHHhhcCCEEEE--
Confidence 4445677899999888774321 355778999753211 111 11233468999999
Q ss_pred CCCCCCCCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 720 TTPIIGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 720 ~~~~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.|.+|+|.+..... .......|+.+.++.+ +.+++.|+|||+||.+++.+|.++|+++++++..++.
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~dl~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 136 (313)
T d1azwa_ 66 -FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -EeccccCCCCccccccchhHHHHHHHHHHHHHhh------ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccc
Confidence 66678888864321 2445556666655543 3368999999999999999999999999999988764
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.59 E-value=2.9e-15 Score=159.61 Aligned_cols=214 Identities=13% Similarity=0.078 Sum_probs=135.1
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
+.||.+++..-.-+.+ ..|+||++||.+..... | ......|+++||.|++ .|.+|
T Consensus 30 ~~~g~~~~y~~~G~~~-------~~p~llllHG~~~~~~~-----------~----~~~~~~l~~~~~~vi~---~Dl~G 84 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNSD-------AEDVFLCLHGEPTWSYL-----------Y----RKMIPVFAESGARVIA---PDFFG 84 (310)
T ss_dssp TCTTCEEEEEEEECTT-------CSCEEEECCCTTCCGGG-----------G----TTTHHHHHHTTCEEEE---ECCTT
T ss_pred CCCCEEEEEEEecCCC-------CCCEEEEECCCCCchHH-----------H----HHHHHHhhccCceEEE---eeecC
Confidence 4589999866554322 26899999997533211 1 1235578899999999 66678
Q ss_pred CCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-
Q 002164 726 EGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP- 800 (958)
Q Consensus 726 ~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~- 800 (958)
+|.+..... ......+|+.+.++.+ +.+++.|+||||||.+++.+|.++|++++++|++++..-.....
T Consensus 85 ~G~S~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~ 158 (310)
T d1b6ga_ 85 FGKSDKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQ 158 (310)
T ss_dssp STTSCEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTC
T ss_pred ccccccccccccccccccccchhhhhhhc------cccccccccceecccccccchhhhccccceEEEEcCccCCCcccc
Confidence 888865321 3445555555555443 33589999999999999999999999999999987643211000
Q ss_pred -----CCccc-cc----------------chh---h------hcHHHHHh----------------c-------------
Q 002164 801 -----FGFQN-ED----------------RTL---W------EATSTYVE----------------M------------- 820 (958)
Q Consensus 801 -----~~~~~-~~----------------~~~---~------~~~~~~~~----------------~------------- 820 (958)
+.... .. ... + .....|.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T d1b6ga_ 159 PAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDIST 238 (310)
T ss_dssp THHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hhHHHHhhcchhhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhh
Confidence 00000 00 000 0 00000000 0
Q ss_pred -CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 821 -SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 821 -sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.......++++|+|+++|++|..++ +....++.+.+... .+++.++++||.+ ..+..+.+.+.+.+||+.
T Consensus 239 ~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~~---~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 239 EAISFWQNDWNGQTFMAIGMKDKLLG--PDVMYPMKALINGC---PEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp HHHHHHHHTCCSEEEEEEETTCSSSS--HHHHHHHHHHSTTC---CCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred hhhHHhhcccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCCC---ccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 0001124678999999999999998 77777776655443 4677899999976 355566677777788764
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.58 E-value=5.3e-14 Score=146.52 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=123.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (958)
-|.||++||.+.... .| ......|+++||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 23 G~~ivllHG~~~~~~-----------~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l 84 (277)
T d1brta_ 23 GQPVVLIHGFPLSGH-----------SW----ERQSAALLDAGYRVIT---YDRRGFGQSSQPTTGYDYDTFAADLNTVL 84 (277)
T ss_dssp SSEEEEECCTTCCGG-----------GG----HHHHHHHHHTTCEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---EeCCCCCcccccccccchhhhhhhhhhhh
Confidence 356888999642211 11 2345578899999999 5556778775432 23556677777766
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEeccCCCCCCCC----CCcccc------------cc--
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNE------------DR-- 808 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~----~~~~~~------------~~-- 808 (958)
+.+ +.+++.++|||+|| .++..++.+.|++++++|.++++....... ...... ..
T Consensus 85 ~~l------~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
T d1brta_ 85 ETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYA 158 (277)
T ss_dssp HHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHH
T ss_pred hcc------CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchh
Confidence 654 23589999999996 455666778899999999987653211100 000000 00
Q ss_pred ---hhhhc-------------------H----------HHHH-----hcCcccccCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 809 ---TLWEA-------------------T----------STYV-----EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 809 ---~~~~~-------------------~----------~~~~-----~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
..+.. . ..+. ..+....+.++++|+|+++|++|..++ ++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~ 236 (277)
T d1brta_ 159 FYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLP--IENT 236 (277)
T ss_dssp HHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSC--GGGT
T ss_pred hhhhccccccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcC--HHHH
Confidence 00000 0 0000 011223456678999999999999998 7765
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.+.+... ...++++++|++||.+. .++...+.+.|.+||++
T Consensus 237 ~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 237 ARVFHKA---LPSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAK 277 (277)
T ss_dssp HHHHHHH---CTTSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CCCCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 5544332 12358899999999864 56677888999999874
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.58 E-value=1e-14 Score=151.74 Aligned_cols=212 Identities=13% Similarity=0.092 Sum_probs=131.9
Q ss_pred eCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCC
Q 002164 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (958)
Q Consensus 646 ~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G 725 (958)
..+|.+++...+ + + -|.||++||.+.... .+..+. ..... .++||.|++ .|.+|
T Consensus 9 ~~~G~~~~Y~~~---G-----~--G~pvvllHG~~~~~~-----------~~~~~~-~~~~~-l~~~~~vi~---~Dl~G 62 (271)
T d1uk8a_ 9 LAAGVLTNYHDV---G-----E--GQPVILIHGSGPGVS-----------AYANWR-LTIPA-LSKFYRVIA---PDMVG 62 (271)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTTCC-----------HHHHHT-TTHHH-HTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---e-----e--CCeEEEECCCCCCcc-----------HHHHHH-HHHHH-HhCCCEEEE---EeCCC
Confidence 348999886544 1 2 245778899642211 111011 11223 357999999 66678
Q ss_pred CCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCC-
Q 002164 726 EGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF- 801 (958)
Q Consensus 726 ~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~- 801 (958)
+|.+.... ........+ +..+.+. .+.+++.++||||||.+++.++.++|++++++|+.++.........
T Consensus 63 ~G~S~~~~~~~~~~~~~~~~----~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~ 136 (271)
T d1uk8a_ 63 FGFTDRPENYNYSKDSWVDH----IIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEG 136 (271)
T ss_dssp STTSCCCTTCCCCHHHHHHH----HHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHH
T ss_pred CCCccccccccccccccchh----hhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhh
Confidence 88775432 122333333 3334443 2346899999999999999999999999999998876532111100
Q ss_pred -----Ccccc----------------c--chh----hh------cHHHHH-------------hcCcccccCCCCCCEEE
Q 002164 802 -----GFQNE----------------D--RTL----WE------ATSTYV-------------EMSPFMSANKLKKPILL 835 (958)
Q Consensus 802 -----~~~~~----------------~--~~~----~~------~~~~~~-------------~~sp~~~~~~~~~P~Li 835 (958)
.+... . ... +. ..+.+. .......+.++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 216 (271)
T d1uk8a_ 137 LNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLI 216 (271)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEE
T ss_pred hhhhhhccchhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeE
Confidence 00000 0 000 00 000010 11223446788999999
Q ss_pred EeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
++|++|..+| +..+..+.+.+. .++++++|++||... .++.+++.+.|.+||++
T Consensus 217 i~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 217 IHGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp EEETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred EecCCCCCcC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 9999999998 888888777654 378999999999863 56678888899999975
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.56 E-value=1.2e-13 Score=138.27 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCC
Q 002164 754 GVAHPSKIAVGGHSYGAFMTANLLAH-APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (958)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (958)
..+|++|++++|+|+||++++.++.. .+..++++|+.++......... . ......++|
T Consensus 101 ~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~~~-----~----------------~~~~~~~~p 159 (218)
T d1auoa_ 101 TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDEL-----E----------------LSASQQRIP 159 (218)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTC-----C----------------CCHHHHTCC
T ss_pred hCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccccc-----c----------------cchhccCCC
Confidence 45799999999999999999988764 5568999999987532111000 0 000112579
Q ss_pred EEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
+|++||++|.+|| ++.++++++.|+..|.++++..|+ .+|.+. .+.+..+.+||.+.|+
T Consensus 160 vl~~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 160 ALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp EEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCccC--HHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999999999999998 589875 3447789999998774
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.56 E-value=1.6e-12 Score=141.76 Aligned_cols=313 Identities=9% Similarity=-0.074 Sum_probs=167.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
+....++||||+++++.... ... ....+|++|..+ + ....++ +. .
T Consensus 22 p~~~~a~spdg~~~~~~~~~----------------------~~~------~~~~v~v~D~~t-g--~~~~~~---~~-~ 66 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPA----------------------HHS------AIIQQWVLDAGS-G--SILGHV---NG-G 66 (373)
T ss_pred CccccccCCCCCEEEEEccc----------------------ccC------CCceEEEEECCC-C--CEEEEE---eC-C
Confidence 45677899999999776432 000 113689998754 2 222233 22 2
Q ss_pred cccceeecCCCCeEEEEEeecc-ccCCCCCceEEEEEcCCCceeeccCCCCcccc---ccccceEEecCCeEEEEEecCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDIYLN---AIFDNFVWVNNSTLLVCTIPLL 265 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~-~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~---~~~~~~~wspDG~~l~~~~~~~ 265 (958)
....++|||||++|++...... .........|++||+.+++.......+..... .....+.|+|||+.+++....
T Consensus 67 ~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~- 145 (373)
T d2madh_ 67 FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA- 145 (373)
T ss_pred CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc-
Confidence 3457899999999999764221 11112346799999999987655443332100 012357899999988766211
Q ss_pred CCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCCccccccccCCCCc
Q 002164 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEK 344 (958)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk 344 (958)
....+.+++. +++..... .......++|||+
T Consensus 146 ----------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~ 177 (373)
T d2madh_ 146 ----------------------------------------------AGPAVGLVVQGGSSDDQLL--SSPTCYHIHPGAP 177 (373)
T ss_pred ----------------------------------------------CCCceEEeeccCCeEEEEe--ccceeEEEecCCC
Confidence 1122334444 33322221 2334668999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
.++++... ++.+.+|+.+++............. ..........+++++..++.
T Consensus 178 ~~~v~~~~------------dg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------- 230 (373)
T d2madh_ 178 STFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTA------AQNLLTQPAQANKSGRIVWP--------- 230 (373)
T ss_pred cEEEEEcC------------CCeEEEEEcCCceeeEEEeeecccc------CccceeeeEEECCCceEEEe---------
Confidence 88766533 3478899988665443222111000 00011123444555443322
Q ss_pred cccccccCCeEEEEeCCCCCCCCceE-------------EEeeccccCceeeecCCceEEEEEeccc------cceEEEE
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEI-------------LHKLDLRYGGISWCDDSLALVYESWYKT------RRTRTWV 485 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~-------------l~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~~l~~ 485 (958)
...+.+++++. .+..... ...........++++|++.+++....+. ....+++
T Consensus 231 -----~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 231 -----VYSGKILQADI---SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred -----cCCceEEEEEc---CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 12223333332 2111111 1111223345789999998876643221 1245778
Q ss_pred EcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
++..++ +....... ...... +.|||||++++|.... ....|++||+.+|+..
T Consensus 303 ~d~~t~--~~~~~~~~-~~~~~~------~a~spDG~~~l~vt~~-------------------~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 303 VTGLVG--QTSSQISL-GHDVDA------ISVAQDGGPDLYALSA-------------------GTEVLHIYDAGAGDQD 354 (373)
T ss_pred EECCCC--cEEEEecC-CCCeeE------EEECCCCCEEEEEEeC-------------------CCCeEEEEECCCCCEE
Confidence 887775 22222211 111222 7899999987765421 1125999999999876
Q ss_pred EEec
Q 002164 566 RIWE 569 (958)
Q Consensus 566 ~l~~ 569 (958)
+...
T Consensus 355 ~~~~ 358 (373)
T d2madh_ 355 QSTV 358 (373)
T ss_pred EEEC
Confidence 6554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.1e-13 Score=146.87 Aligned_cols=235 Identities=12% Similarity=-0.005 Sum_probs=161.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++|+....+ +.|.+|++.... ......+.. +..
T Consensus 99 ~I~~v~~s~dg~~l~s~~~d---------------------------------g~i~iwd~~~~~-~~~~~~~~~--~~~ 142 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGEA---------------------------------STLSIWDLAAPT-PRIKAELTS--SAP 142 (337)
T ss_dssp BEEEEEECTTSSEEEEEESS---------------------------------SEEEEEECCCC---EEEEEEEC--SSS
T ss_pred cEEEEEEcCCCCEEEEeecc---------------------------------cccccccccccc-ccccccccc--ccc
Confidence 35678999999999887765 478999985411 011222322 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+||+..++... ....|.++++.+++........... +..++|+++++.+++..
T Consensus 143 ~v~~~~~~~~~~~l~s~~---------~d~~i~~~~~~~~~~~~~~~~~~~~----v~~l~~s~~~~~~~~~~------- 202 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCC---------SDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDGTKLWTGG------- 202 (337)
T ss_dssp CEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEE-------
T ss_pred cccccccccccccccccc---------ccccccccccccccccccccccccc----ccccccccccccccccc-------
Confidence 677889999999888754 2567899999988776554433332 67889999999888761
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~ 347 (958)
....+.++++ +++.. .+.....+..++|+|+|+.|+
T Consensus 203 ------------------------------------------~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 240 (337)
T d1gxra_ 203 ------------------------------------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp ------------------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ------------------------------------------ccccccccccccceeecccccccceEEEEEcccccccc
Confidence 1245777787 66433 332236678889999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccc
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~ 427 (958)
....+ +.+.+|++..+.......+. ..+..+.|+|||+.++..
T Consensus 241 ~~~~d-------------~~i~i~d~~~~~~~~~~~~~-------------~~i~~v~~s~~g~~l~s~----------- 283 (337)
T d1gxra_ 241 VGMES-------------SNVEVLHVNKPDKYQLHLHE-------------SCVLSLKFAYCGKWFVST----------- 283 (337)
T ss_dssp EEETT-------------SCEEEEETTSSCEEEECCCS-------------SCEEEEEECTTSSEEEEE-----------
T ss_pred eeccc-------------cccccccccccccccccccc-------------cccceEEECCCCCEEEEE-----------
Confidence 77633 48999999866554432221 345789999999977652
Q ss_pred ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+..+.|++|++ ..++......+...+..+.|||||++|+..+.++. .+||.+
T Consensus 284 --s~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~--I~vWdl 335 (337)
T d1gxra_ 284 --GKDNLLNAWRT---PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK--ATVYEV 335 (337)
T ss_dssp --ETTSEEEEEET---TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC--EEEEEE
T ss_pred --eCCCeEEEEEC---CCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCe--EEEEEE
Confidence 44567899996 44444444455667788999999999887654433 667754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.55 E-value=7.8e-13 Score=147.43 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=168.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCC-CCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~-~~~ 189 (958)
+..++|||||++|+....+ +.+.+|++.+ ++.....++.... ...
T Consensus 64 ~~~vafSPDGk~l~~~~~d---------------------------------~~v~vwd~~t-~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRD---------------------------------ARIDMIDLWA-KEPTKVAEIKIGIEARS 109 (426)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTS-SSCEEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEeCC---------------------------------CCEEEEEccC-CceeEEEEEeCCCCCcc
Confidence 4578999999999776654 4788999865 2111122222111 112
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+..+.|||||++|+.... ....+.++|.++++..++....... +....+.+++...++.....
T Consensus 110 ~~~s~~~spDG~~l~v~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~s~d---- 173 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAY--------WPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYHPEPRVAAIIASHE---- 173 (426)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ESSEEEEEETTTCCEEEEEECCEEC----SSSCCEESCCCEEEEEECSS----
T ss_pred eEEeeeecCCCCEEEEeec--------CCCeEEEEcCCccceeEEeeccCCC----ccceeecCCCceeEEEECCC----
Confidence 4567899999999887543 2567889999988876654433221 22344555554333221000
Q ss_pred CCCCCCCCCCcee-eecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe---eeecCCCccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQ-SNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~-~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDGk 344 (958)
+..+. ... ....++.++. ++. ...+........+.|+|||+
T Consensus 174 --------~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 219 (426)
T d1hzua2 174 --------HPEFIVNVK--------------------------ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR 219 (426)
T ss_dssp --------SSEEEEEET--------------------------TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSC
T ss_pred --------CCEEEEecC--------------------------CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCc
Confidence 00000 000 2234556655 442 22333335567889999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+++..... ...+.+++...+............ .......+..++...++....
T Consensus 220 ~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----- 272 (426)
T d1hzua2 220 YFMTAANN------------SNKVAVIDSKDRRLSALVDVGKTP----------HPGRGANFVHPKYGPVWSTSH----- 272 (426)
T ss_dssp EEEEEETT------------CSEEEEEETTTTEEEEEEECSSCC----------CCSCCEEEEETTTEEEEEEEC-----
T ss_pred EEEeeeec------------ccceeeeecccccEEEEeccCCcc----------cccceeeeecCCCCceEEecc-----
Confidence 99887643 237778888866554433221110 011223333333333322111
Q ss_pred cccccccCCeEEEEeCCCC-----CCCCceEEEeeccccCceeeecCCceEEEEEecc--c-cceEEEEEcCCCCCCCcE
Q 002164 425 AKVEVTPRDIIYTQQAEPV-----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYK--T-RRTRTWVISPGSKDVAPR 496 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~-----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~--~-~~~~l~~~~~~~~~~~~~ 496 (958)
...+.+.+++.... .+.....+..+...+..++|||||++|+...... + ....|.++|+++++....
T Consensus 273 -----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~ 347 (426)
T d1hzua2 273 -----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347 (426)
T ss_dssp -----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred -----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence 12233444442100 1122334444555678899999999998643111 0 012356666666532222
Q ss_pred EEeccCCcccc-CCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCC
Q 002164 497 ILFDRSSEDVY-SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (958)
Q Consensus 497 ~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~ 571 (958)
.+......... .....-.++|||||++|++..-.. ......|.+||.++++........
T Consensus 348 ~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~----------------~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG----------------KNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCC----------------TTSCCEEEEEETTTTEEEEEECCT
T ss_pred EeccchhcccCCCCccEEEEEECCCCCEEEEEEecC----------------CCCCCeEEEEECCCCeEEEEECCC
Confidence 22100000000 000011267999999987764211 112336999999999877665443
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.55 E-value=1.4e-14 Score=148.52 Aligned_cols=179 Identities=9% Similarity=-0.035 Sum_probs=116.0
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
.+..|+++||.|++ .|.+|+|.+..... ......+|+.+.+ .+.. ..+++.++|||+||.+++.++.++
T Consensus 21 ~~~~L~~~g~~Via---~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~~---~~~~--~~~~~~lvGhS~Gg~ia~~~a~~~ 92 (256)
T d3c70a1 21 LKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL---EALP--PGEKVILVGESCGGLNIAIAADKY 92 (256)
T ss_dssp HHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH---HHSC--TTCCEEEEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEE---EcCCCCCCCCCCCCCCCCHHHHHHHhhhhh---hhhc--cccceeecccchHHHHHHHHhhcC
Confidence 46678899999999 66678888754321 2334444444433 3332 246899999999999999999999
Q ss_pred CCceeEEEEeccCCCCCCCCCC--------------------cccc--------cchhh------------hcH------
Q 002164 781 PHLFCCGIARSGAYNRTLTPFG--------------------FQNE--------DRTLW------------EAT------ 814 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~--------------------~~~~--------~~~~~------------~~~------ 814 (958)
|++++++|.+++.......... .... ..... ...
T Consensus 93 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (256)
T d3c70a1 93 CEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLT 172 (256)
T ss_dssp GGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHC
T ss_pred chhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhhhhhhhcchhhHHHhhhhh
Confidence 9999999998865321110000 0000 00000 000
Q ss_pred -------HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002164 815 -------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (958)
Q Consensus 815 -------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~ 887 (958)
..............+++|+|+++|++|..+| ++..+++.+.+. ..++++++++||... .++.+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~agH~~~-~e~P~~~~ 245 (256)
T d3c70a1 173 RKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQIENYK----PDKVYKVEGGDHKLQ-LTKTKEIA 245 (256)
T ss_dssp CCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHHHHHSC----CSEEEECCSCCSCHH-HHSHHHHH
T ss_pred hhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHH
Confidence 0001111222334457899999999999998 887777776653 358899999999863 56677888
Q ss_pred HHHHHHHHHh
Q 002164 888 WETDRWLQKY 897 (958)
Q Consensus 888 ~~i~~fl~~~ 897 (958)
+.+.+|+++|
T Consensus 246 ~~l~~~~~~~ 255 (256)
T d3c70a1 246 EILQEVADTY 255 (256)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8888888875
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=4.7e-14 Score=146.89 Aligned_cols=245 Identities=15% Similarity=0.187 Sum_probs=146.3
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCC---CCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCc
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPS---KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (958)
+...+++.+. -|.++...+|+|+++... ++.++|+|+++||.... .+.|.... ...+...+.|+
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~-----------~~~w~~~~-~~~~~~~~~~~ 80 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT-----------PDNASEKA-FWQFQADKYGF 80 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC-----------HHHHHHHS-CHHHHHHHHTC
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC-----------HHHHHHhh-hHHHHHHHcCC
Confidence 4566777765 578899999999988432 33469999999995321 11111111 12334456899
Q ss_pred EEEEcCCCCC-------------CCCCCccc----------chhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEe
Q 002164 714 AILGGPTTPI-------------IGEGDEEA----------NDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGH 766 (958)
Q Consensus 714 ~vl~~~~~~~-------------~G~G~~~~----------~~~~~~~~~~D~~~av~~l~~~----~~~d~~~i~l~G~ 766 (958)
+|+.+...+. .|.+.++. ...+.....+++...|+..-.. ...++++.+|+|+
T Consensus 81 ~vv~~~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~ 160 (299)
T d1pv1a_ 81 AIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGH 160 (299)
T ss_dssp EEEECCSSCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEE
T ss_pred ceecCCCcccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEee
Confidence 9988432111 01111111 1122233444444444433211 1123468999999
Q ss_pred ChHHHHHHHHHHh--CCCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCC---C-CCCEEEEeeCC
Q 002164 767 SYGAFMTANLLAH--APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK---L-KKPILLVHGEE 840 (958)
Q Consensus 767 S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---~-~~P~Lii~G~~ 840 (958)
||||+.|+.++.+ +|++|.++++.+|..+.....+..........+....+..+++...+++ . ..++++.+|++
T Consensus 161 SmGG~gAl~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~ 240 (299)
T d1pv1a_ 161 SMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDS 240 (299)
T ss_dssp THHHHHHHHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTT
T ss_pred cccHHHHHHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCC
Confidence 9999999999986 4899999999999877544322211111111112223334444433322 2 35788889999
Q ss_pred CCCCCCChH-HHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhhc
Q 002164 841 DNNSGTLTM-QSDRFFNALKGHGAL--CRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (958)
Q Consensus 841 D~~v~~~~~-~~~~~~~~l~~~g~~--~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (958)
|...+ .. ....|.++++.++.+ +++...||.+|.+. -....+...+.|+.++|+
T Consensus 241 D~~~~--~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~---yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 241 DPFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CTTTT--TTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred Ccchh--hhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 98865 32 357899999988765 77878888889852 244566777899988875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.53 E-value=1.3e-12 Score=137.35 Aligned_cols=268 Identities=14% Similarity=0.070 Sum_probs=168.0
Q ss_pred eceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+.|.+||+.+ ++ .+.+. .+......+|||||++|+.+.. ....|.++|+.+++..........
T Consensus 12 ~~v~v~D~~t----~~~~~~i~---~g~~p~~va~spdG~~l~v~~~--------~~~~i~v~d~~t~~~~~~~~~~~~- 75 (301)
T d1l0qa2 12 DNISVIDVTS----NKVTATIP---VGSNPMGAVISPDGTKVYVANA--------HSNDVSIIDTATNNVIATVPAGSS- 75 (301)
T ss_dssp TEEEEEETTT----TEEEEEEE---CSSSEEEEEECTTSSEEEEEEG--------GGTEEEEEETTTTEEEEEEECSSS-
T ss_pred CEEEEEECCC----CeEEEEEE---CCCCceEEEEeCCCCEEEEEEC--------CCCEEEEEECCCCceeeeeecccc-
Confidence 3689999855 33 22332 3345677899999999876542 255899999999877654433332
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...++|++||+.+++... ....+.+++.
T Consensus 76 ----~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 103 (301)
T d1l0qa2 76 ----PQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDT 103 (301)
T ss_dssp ----EEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ----cccccccccccccccccc------------------------------------------------ccceeeeccc
Confidence 458899999998887611 1234667777
Q ss_pred -CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+++.. .+..........|+|||+.+++.... ...+.+++..+.......... .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------------~ 158 (301)
T d1l0qa2 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------R 158 (301)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------S
T ss_pred ccceeeeeccccccceEEEeecCCCeeeeeecc------------ccceeeeeccccceeeecccC-------------C
Confidence 66433 33333555678899999999888743 337888888865543322211 2
Q ss_pred CcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEecccc
Q 002164 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (958)
.+..+.|+||++.+++.. .....+++++. .................+.|+++|+.++.......
T Consensus 159 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~- 222 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVAN------------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY- 222 (301)
T ss_dssp SEEEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred CceEEEeeccccceeeec------------ccccccccccc---cceeeeecccccCCcceeeccccccccccccccce-
Confidence 345788999999877631 12334555553 33333333333444567899999999877654332
Q ss_pred ceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEEC
Q 002164 480 RTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (958)
Q Consensus 480 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl 559 (958)
...|+++|+.++ +........ ..... ++|||||++|+.... ....|.+||+
T Consensus 223 ~~~v~v~D~~t~--~~~~~~~~~-~~~~~------va~spdg~~l~va~~--------------------~~~~i~v~D~ 273 (301)
T d1l0qa2 223 FNTVSMIDTGTN--KITARIPVG-PDPAG------IAVTPDGKKVYVALS--------------------FCNTVSVIDT 273 (301)
T ss_dssp CCEEEEEETTTT--EEEEEEECC-SSEEE------EEECTTSSEEEEEET--------------------TTTEEEEEET
T ss_pred eeeeeeeecCCC--eEEEEEcCC-CCEEE------EEEeCCCCEEEEEEC--------------------CCCeEEEEEC
Confidence 256889998875 222222211 11222 789999998865541 1126999999
Q ss_pred CCCceEEEe
Q 002164 560 NTGSKERIW 568 (958)
Q Consensus 560 ~~g~~~~l~ 568 (958)
++++.....
T Consensus 274 ~t~~~~~~~ 282 (301)
T d1l0qa2 274 ATNTITATM 282 (301)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 998765443
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.53 E-value=9.6e-14 Score=144.68 Aligned_cols=213 Identities=14% Similarity=0.099 Sum_probs=126.1
Q ss_pred CCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH----
Q 002164 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---- 710 (958)
Q Consensus 635 ~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---- 710 (958)
...+.+.++++..+| +..+++|+|++|++.+ ++|+|+++||++....+.. .+..........+.+
T Consensus 23 ~~g~v~~~~~~~~~~-~r~~~vylP~~y~~~k--~yPvl~~lhG~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~ 91 (273)
T d1wb4a1 23 QAGRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTIF--------SNDVKLQNILDHAIMNGEL 91 (273)
T ss_dssp SCCEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTSTT--------STTTCHHHHHHHHHHHTSS
T ss_pred CCCeEEEEEEecCCC-eEEEEEEeCCCCCCCC--CceEEEEEeCCCCCcchhh--------hhccchhHHHHhhhhhhcc
Confidence 335678899998887 4699999999997655 5999999999753321110 011111111222222
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHH---------HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002164 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA---------AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~---------av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (958)
..++|+.++..+..+.+... ......++.. .+..+..+..+|+++++++|+|+||++|+.++.++|
T Consensus 92 ~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~p 166 (273)
T d1wb4a1 92 EPLIVVTPTFNGGNCTAQNF-----YQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCL 166 (273)
T ss_dssp CCEEEEECCSCSTTCCTTTH-----HHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHT
T ss_pred CCceeeccccCCCCCccccc-----hhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCC
Confidence 46788886665544443321 1111222111 122223334479999999999999999999999999
Q ss_pred CceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHH--
Q 002164 782 HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK-- 859 (958)
Q Consensus 782 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~-- 859 (958)
++|+++++++|.+...... ............. ........++++.+|+.|.. ......+.+.+.
T Consensus 167 d~f~a~~~~sg~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~ 232 (273)
T d1wb4a1 167 DYVAYFMPLSGDYWYGNSP------QDKANSIAEAINR----SGLSKREYFVFAATGSEDIA----YANMNPQIEAMKAL 232 (273)
T ss_dssp TTCCEEEEESCCCCBSSSH------HHHHHHHHHHHHH----HTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHTS
T ss_pred CcceEEEEeCcccccCCCc------ccccccchhhhhh----hhhcccceEEEEecCCCCcc----cccchhHHHHHHHH
Confidence 9999999999875422111 0000000001111 11222345677777887754 344444444443
Q ss_pred --------hCCCcEEEEEeCCCCccC
Q 002164 860 --------GHGALCRLVILPFESHGY 877 (958)
Q Consensus 860 --------~~g~~~~~~~~p~~~H~~ 877 (958)
..++.+.+..+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 233 PHFDYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHHHHhcCCCEEEEEECCCccCH
Confidence 335688999999999964
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.51 E-value=3.4e-14 Score=149.23 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=132.9
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCC
Q 002164 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 647 ~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
.+|.+++...+-|++ .|+||++||.+.... .|. ..+..| +.||.|++ .+.+|+
T Consensus 14 ~~g~~i~y~~~G~~~--------~p~lvllHG~~~~~~-----------~~~----~~~~~L-~~~~~vi~---~d~~G~ 66 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD--------GTPVLFLHGNPTSSY-----------LWR----NIIPHV-APSHRCIA---PDLIGM 66 (291)
T ss_dssp ETTEEEEEEEESCSS--------SSCEEEECCTTCCGG-----------GGT----TTHHHH-TTTSCEEE---ECCTTS
T ss_pred ECCEEEEEEEeCCCC--------CCeEEEECCCCCCHH-----------HHH----HHHHHH-hcCCEEEE---EeCCCC
Confidence 389999877764432 366888999653211 111 223344 56999999 556677
Q ss_pred CCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CC-
Q 002164 727 GDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG- 802 (958)
Q Consensus 727 G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~- 802 (958)
|.+..+ ........+|+.++++.+ +-+++.++|||+||.+++.++.++|++++++++.++........ +.
T Consensus 67 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~ 140 (291)
T d1bn7a_ 67 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPE 140 (291)
T ss_dssp TTSCCCSCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCH
T ss_pred ccccccccccchhHHHHHHhhhhhhh------ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhh
Confidence 777543 222455566666655543 34689999999999999999999999999999876543211000 00
Q ss_pred --------c--cc-------ccc------------------------hhhhc---HHHH----Hhc--------------
Q 002164 803 --------F--QN-------EDR------------------------TLWEA---TSTY----VEM-------------- 820 (958)
Q Consensus 803 --------~--~~-------~~~------------------------~~~~~---~~~~----~~~-------------- 820 (958)
+ .. ... ..+.. .... ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T d1bn7a_ 141 FARETFQAFRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVE 220 (291)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred hhhhHHHHHhhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhh
Confidence 0 00 000 00000 0000 000
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
.....+.++++|+|+++|++|..+| +..+.++.+.++ ..++++++++||.+. .+..+.+.+.+.+||+.
T Consensus 221 ~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 221 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPG 289 (291)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCGG-GTCHHHHHHHHHHHSGG
T ss_pred hhhhhhhcCCCCEEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHh
Confidence 0012235678999999999999998 888888877664 368999999999763 55667788888888764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.51 E-value=1.7e-12 Score=136.60 Aligned_cols=247 Identities=11% Similarity=0.096 Sum_probs=149.6
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
+.+.++. ..+...+|||||++|+... ....|.+||+++++..+...... ...+..++|+|||++++
T Consensus 6 ~~~~GH~--~~V~~l~~s~dg~~l~s~s---------~Dg~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~ 71 (299)
T d1nr0a2 6 QVRYGHN--KAITALSSSADGKTLFSAD---------AEGHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFT 71 (299)
T ss_dssp EEECCCS--SCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEE
T ss_pred eEcCCCC--CCcEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeec
Confidence 3444543 5689999999999988754 24578889999988766543221 11277899999998766
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee---ecCC--Ccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGP--PAV 333 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~l~~--~~~ 333 (958)
.. ....+.+++. ..... .+.. ...
T Consensus 72 ~~--------------------------------------------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 101 (299)
T d1nr0a2 72 VS--------------------------------------------------WDDHLKVVPAGGSGVDSSKAVANKLSSQ 101 (299)
T ss_dssp EE--------------------------------------------------TTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred cc--------------------------------------------------ceeeEEEeccCCcccccccccccccccc
Confidence 54 1223455554 22111 1111 144
Q ss_pred ccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCc
Q 002164 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (958)
Q Consensus 334 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l 413 (958)
+..+.|+|||+.++.... +.+.+|+.... .+.... .....+.|+||++.+
T Consensus 102 ~~~~~~s~~g~~~~~~~~--------------~~i~~~~~~~~-~~~~~~---------------~~~~~~~~s~~~~~l 151 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACY--------------KHIAIYSHGKL-TEVPIS---------------YNSSCVALSNDKQFV 151 (299)
T ss_dssp EEEEEECTTSSCEEEEES--------------SEEEEEETTEE-EEEECS---------------SCEEEEEECTTSCEE
T ss_pred cccccccccccccccccc--------------ccccccccccc-cccccc---------------ccccccccccccccc
Confidence 567889999998877652 26788875421 111111 123568899999987
Q ss_pred eEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.. +..+.+.++++ .+++...+ ..+...+..+.|+|+++.|+.....+ .++++++..+
T Consensus 152 ~~g-------------~~dg~i~~~d~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~ 211 (299)
T d1nr0a2 152 AVG-------------GQDSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPYSVANN 211 (299)
T ss_dssp EEE-------------ETTSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEEGGGT
T ss_pred ccc-------------ccccccccccc---cccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 763 44567888885 44444333 33455677899999999988765433 2555555442
Q ss_pred CCC-cEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEE
Q 002164 492 DVA-PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 492 ~~~-~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l 567 (958)
... ...........+.. ++|+|+|++|+....+ ..|++||+++++...+
T Consensus 212 ~~~~~~~~~~~h~~~v~~------l~~s~~~~~l~sgs~d---------------------g~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 212 FELAHTNSWTFHTAKVAC------VSWSPDNVRLATGSLD---------------------NSVIVWNMNKPSDHPI 261 (299)
T ss_dssp TEESCCCCCCCCSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTCTTSCCE
T ss_pred cccccccccccccccccc------ccccccccceEEEcCC---------------------CEEEEEECCCCCcceE
Confidence 110 00111111222222 7899999998877621 2499999987654433
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.51 E-value=2.7e-13 Score=141.21 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=120.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (958)
-|.||++||.+.... . ....+..|+++||.|++ .|.+|+|.+.... .......+|+.+.+
T Consensus 23 g~~illlHG~~~~~~-----------~----~~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~di~~~i 84 (279)
T d1hkha_ 23 GQPVVLIHGYPLDGH-----------S----WERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVL 84 (279)
T ss_dssp SEEEEEECCTTCCGG-----------G----GHHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHH-----------H----HHHHHHHHHHCCCEEEE---EechhhCCccccccccchhhhhhhhhhhh
Confidence 467889999643211 1 12345567899999999 6667888775432 22455667777766
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEeccCCCCCCCC--C--Cccccc-----------c---
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARSGAYNRTLTP--F--GFQNED-----------R--- 808 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~--~--~~~~~~-----------~--- 808 (958)
+.+ +.+++.++|||||| .++..++.+.|+++++++++++........ . ...... .
T Consensus 85 ~~l------~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
T d1hkha_ 85 ETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAW 158 (279)
T ss_dssp HHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHH
T ss_pred hhc------CcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 654 33589999999996 555666777899999999987643211100 0 000000 0
Q ss_pred --hhhhc-------------H-------HHHHhcC-----------------cccccCCCCCCEEEEeeCCCCCCCCChH
Q 002164 809 --TLWEA-------------T-------STYVEMS-----------------PFMSANKLKKPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 809 --~~~~~-------------~-------~~~~~~s-----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (958)
..+.. . ....... .+..+.++++|+|+++|++|..++ .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~ 236 (279)
T d1hkha_ 159 FTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--ID 236 (279)
T ss_dssp HHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccC--HH
Confidence 00000 0 0000000 112234467999999999999987 65
Q ss_pred H-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 850 Q-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 850 ~-~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
. .+.+.+.+. .++++++|++||.+. .+...++.+.|.+||++
T Consensus 237 ~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 237 ATARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLAK 279 (279)
T ss_dssp TTHHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 4 344444333 358889999999864 45677888889999864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.51 E-value=3.8e-13 Score=146.97 Aligned_cols=258 Identities=12% Similarity=0.137 Sum_probs=157.0
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC
Q 002164 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (958)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~ 187 (958)
.+++..++|||||++||+...+ +.|.||++.+ ++......+.++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~---------------------------------~~i~iw~~~~-~~~~~~~~l~gH-- 50 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNN---------------------------------HEVHIYEKSG-NKWVQVHELKEH-- 50 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSS---------------------------------SEEEEEEEET-TEEEEEEEEECC--
T ss_pred CCCeEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCC-CCEEEEEEecCC--
Confidence 3468899999999999988764 4789999854 211123334443
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCC
Q 002164 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (958)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (958)
...+....|||||++|+.... ...|++|++.+++..+...... .+..+..++|+|||+.|+....+
T Consensus 51 ~~~V~~l~fsp~~~~l~s~s~---------D~~i~vWd~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~s~d--- 116 (371)
T d1k8kc_ 51 NGQVTGVDWAPDSNRIVTCGT---------DRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGS--- 116 (371)
T ss_dssp SSCEEEEEEETTTTEEEEEET---------TSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCCEEEEEECCCCCEEEEEEC---------CCeEEEEeeccccccccccccc--ccccccccccccccccceeeccc---
Confidence 346899999999999987542 4467777877765443321111 11126789999999999876211
Q ss_pred CCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe--eeecC-CC-ccccccccCCC
Q 002164 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIG-PP-AVYTSLDPSPD 342 (958)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~--~~~l~-~~-~~~~~~~~SpD 342 (958)
+.-.+|.++. ... ..... .. ..+..++|+||
T Consensus 117 --------------------------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 117 --------------------------------------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152 (371)
T ss_dssp --------------------------------------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred --------------------------------------------Ccceeeeeeccccccccccccccccccccccccccc
Confidence 1223554544 221 11111 22 56778999999
Q ss_pred CcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEecc-CCccccCc-----ccccccccCcceeeeecCCCCceEE
Q 002164 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIP-----IAFNSVRKGMRSINWRSDKPSTLYW 416 (958)
Q Consensus 343 Gk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~-~~~~~~~p-----~~~~~~~~~~~~~~~spDG~~l~~~ 416 (958)
|++|+..+. ++.+.+|+........... .......+ .........+..++|+|||+.|+..
T Consensus 153 ~~~l~s~s~-------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 153 SVLLAAGSC-------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp SSEEEEEET-------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred ccceecccc-------------CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 999987763 3478899876432211100 00000000 0111222345678999999987763
Q ss_pred EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+..+.|.+||. ..+.....+......+..+.|+|||+.|+... +. ...+|.++...
T Consensus 220 -------------~~d~~i~iwd~--~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~--d~-~~~~~~~~~~~ 275 (371)
T d1k8kc_ 220 -------------SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAGH--DC-FPVLFTYDSAA 275 (371)
T ss_dssp -------------ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEET--TS-SCEEEEEETTT
T ss_pred -------------ccCCcceEEee--ecccceeeeecccccceeeeecCCCCEEEEEc--CC-ceEEEEeeCCC
Confidence 44567899996 23333444455555678899999998776432 22 25677777554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=4.9e-12 Score=140.85 Aligned_cols=355 Identities=9% Similarity=-0.003 Sum_probs=179.4
Q ss_pred CCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcc
Q 002164 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (958)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~ 191 (958)
..+.++.|.+.++++... .+ +.|.+||+.+ + .....+. .+..+
T Consensus 22 ~~~~~~~d~~~~~~V~~~---------------------~d----------g~v~vwD~~t-~--~~~~~l~---~g~~~ 64 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLR---------------------DA----------GQIALVDGDS-K--KIVKVID---TGYAV 64 (426)
T ss_dssp SSCCSCCCGGGEEEEEET---------------------TT----------TEEEEEETTT-C--SEEEEEE---CCSSE
T ss_pred CcccccCCCCeEEEEEEc---------------------CC----------CEEEEEECCC-C--cEEEEEe---CCCCe
Confidence 346688898877766542 11 4789999865 2 2233443 33457
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC-ccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
..++|||||++|+.... ...|.+||+++++...+..... ......+.+++|||||++|++...
T Consensus 65 ~~vafSPDGk~l~~~~~---------d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------- 128 (426)
T d1hzua2 65 HISRMSASGRYLLVIGR---------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------- 128 (426)
T ss_dssp EEEEECTTSCEEEEEET---------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-------
T ss_pred eEEEECCCCCEEEEEeC---------CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec-------
Confidence 88999999999876431 3478999999887543321111 011111346778899999886611
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCC-C-cccc-----------c
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYT-----------S 336 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~-----------~ 336 (958)
....+.+++. ++....+.. . ..+. .
T Consensus 129 -----------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 129 -----------------------------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp -----------------------------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred -----------------------------------------CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence 1233555565 443332221 1 2222 3
Q ss_pred cccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEE
Q 002164 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (958)
Q Consensus 337 ~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~ 416 (958)
+..|+|++.+++.... .+.+.+++........++.. .....+..+.|+|||+.++..
T Consensus 168 i~~s~d~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~a 224 (426)
T d1hzua2 168 IIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTSI-----------GAAPFLADGGWDSSHRYFMTA 224 (426)
T ss_dssp EEECSSSSEEEEEETT------------TTEEEEEECSSSSSCEEEEE-----------ECCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEecCC------------CCeEEEEEeccccceeeEEe-----------ccCCccEeeeECCCCcEEEee
Confidence 3445555555444322 22444444332211111111 111344678999999987763
Q ss_pred EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEe-ec--cccCceeeecCCceEEEEEeccccceEEEEEcCCCCC-
Q 002164 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD- 492 (958)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~- 492 (958)
. ...+.+.+++. ..++...... .. .......+..++...++.....+. ..+..++.....
T Consensus 225 ~------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~v~~~~~~~~~~ 288 (426)
T d1hzua2 225 A------------NNSNKVAVIDS---KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-GSISLIGTDPKNH 288 (426)
T ss_dssp E------------TTCSEEEEEET---TTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTT-CEEEEEECCTTTC
T ss_pred e------------ecccceeeeec---ccccEEEEeccCCcccccceeeeecCCCCceEEeccCCC-ceEEEeecccccc
Confidence 1 22345666664 3333322221 11 112233444444433333322211 223333332211
Q ss_pred ----CCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE-EE
Q 002164 493 ----VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE-RI 567 (958)
Q Consensus 493 ----~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~-~l 567 (958)
.+...........+++ +++||||++|+...... .+ ......|.+||+++++.. ++
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~------v~~sPdg~~l~v~~~~~----------~s----~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLF------IKTHPKSSHLYVDTTFN----------PD----ARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCC------EECCTTCSEEEECCTTC----------SS----HHHHTCEEEEETTCTTSCCEE
T ss_pred ccccceEeEEEecCCCceeE------EEcCCCCceEEEeecCC----------CC----cccCCEEEEEECCCCCcCeEE
Confidence 0112222233333333 78999999998643100 00 001235999999887643 33
Q ss_pred ecCCcc-cccceeEeecCCCccccccccCCEEEEEEec-CCCCceEEEEECCCCCeeE
Q 002164 568 WESDKE-KYYETTVALMSDQTEGDLYLNQLKILTSKES-KTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 568 ~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s-~~~p~~~~~~d~~~g~~~~ 623 (958)
...... ..-+....+ -.++|||||++++++... ......|.++|..+++.+.
T Consensus 349 ~~~~~~~~~~~~~~rv----~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 349 LPIAEWADLGEGAKRV----VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp ECHHHHHCCCSSCCCE----EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred eccchhcccCCCCccE----EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence 211100 000000000 125799999999887754 3456679999998887654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=1.5e-12 Score=142.63 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=163.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeecc-----
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG----- 184 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~----- 184 (958)
.+..++|||||++||...+ +.|.||++.+ + .....+..
T Consensus 64 ~V~~l~fs~dg~~lasg~d----------------------------------~~i~iW~~~~-~--~~~~~~~~~~~~~ 106 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCN----------------------------------KTTQVYRVSD-G--SLVARLSDDSAAN 106 (388)
T ss_dssp CCCEEEECTTSSEEEEECB----------------------------------SCEEEEETTT-C--CEEEEECC-----
T ss_pred cEEEEEECCCCCEEEEEeC----------------------------------CeEEEEEecc-c--ceEeeeccccccc
Confidence 6889999999999987654 2677787743 2 11111110
Q ss_pred -----------CCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEec
Q 002164 185 -----------FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (958)
Q Consensus 185 -----------~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (958)
......+...+|||||++|+.... ...|.+++...++........... +..+.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~---------dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~~ 173 (388)
T d1erja_ 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE---------DRLIRIWDIENRKIVMILQGHEQD----IYSLDYFP 173 (388)
T ss_dssp ------------CCCCBEEEEEECTTSSEEEEEET---------TSCEEEEETTTTEEEEEECCCSSC----EEEEEECT
T ss_pred ccccccccccccCCCCCEEEEEECCCCCcceeccc---------cccccccccccccccccccccccc----cccccccc
Confidence 111225778899999999988552 557888998887766554433322 67889999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC-CC
Q 002164 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP 331 (958)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~-~~ 331 (958)
++..++... ....+.+++. +....... ..
T Consensus 174 ~~~~~~~~~-------------------------------------------------~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 174 SGDKLVSGS-------------------------------------------------GDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp TSSEEEEEE-------------------------------------------------TTSEEEEEETTTTEEEEEEECS
T ss_pred ccccccccc-------------------------------------------------cceeeeeeeccccccccccccc
Confidence 998888661 1234666666 44332222 22
Q ss_pred -ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecC
Q 002164 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (958)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spD 409 (958)
.......+++||+.|+..+.+ +.+.+|+...+. ...+..... ...+....+..+.|+||
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~~~~~~~~~~~~~~~~~------~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLD-------------RAVRVWDSETGFLVERLDSENE------SGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTT
T ss_pred cccccccccCCCCCeEEEEcCC-------------CeEEEeecccCccceeeccccc------cccCCCCCEEEEEECCC
Confidence 222333445588888876633 479999998543 333322110 01112245678999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc------------eEEEeeccccCceeeecCCceEEEEEecc
Q 002164 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------------EILHKLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 410 G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~------------~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
|+.|+.. +..+.+.+|++ ..+... .........+..++|+|+|+.|+..+.++
T Consensus 266 ~~~l~s~-------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 330 (388)
T d1erja_ 266 GQSVVSG-------------SLDRSVKLWNL--QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330 (388)
T ss_dssp SSEEEEE-------------ETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCEEEEE-------------ECCCcEEEEec--cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence 9987763 34557788875 111111 11122334566789999999988765433
Q ss_pred ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.|+++|+.++ +...........+..-.......|+|||++|+...
T Consensus 331 ----~i~vwd~~~~--~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 331 ----GVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp ----EEEEEETTTC--CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred ----EEEEEECCCC--cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 3666677664 33444443333332211111145899999888765
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.50 E-value=2.4e-13 Score=143.65 Aligned_cols=222 Identities=17% Similarity=0.077 Sum_probs=134.3
Q ss_pred CCCCCCcEEEEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHC
Q 002164 632 PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR 711 (958)
Q Consensus 632 ~~~~~~~~~~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 711 (958)
|.++... .-.+++.||.+|+...+-+++ .|.||++||++..... |.. ...++++
T Consensus 6 p~~~p~~--~~~v~~~dG~~i~y~~~G~~~--------g~pvvllHG~~~~~~~-----------w~~-----~~~~l~~ 59 (313)
T d1wm1a_ 6 PPLAAYD--SGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGGIS-----------PHH-----RQLFDPE 59 (313)
T ss_dssp CCCCCSE--EEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCCCC-----------GGG-----GGGSCTT
T ss_pred CCCCCCc--CCEEEeCCCcEEEEEEecCCC--------CCeEEEECCCCCcccc-----------hHH-----HHHHhhc
Confidence 4455443 334667799999988775432 3567788997633221 111 1133567
Q ss_pred CcEEEEcCCCCCCCCCCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 002164 712 GFAILGGPTTPIIGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (958)
||.|++ .|.+|+|.+..... .......|+...++ + .+.+++.++|||+||.++..++...|++++.+
T Consensus 60 ~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~d~~~~~~----~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~ 130 (313)
T d1wm1a_ 60 RYKVLL---FDQRGCGRSRPHASLDNNTTWHLVADIERLRE----M--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEM 130 (313)
T ss_dssp TEEEEE---ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHH----H--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEE
T ss_pred CCEEEE---EeCCCcccccccccccccchhhHHHHHHhhhh----c--cCCCcceeEeeecCCchhhHHHHHHhhhheee
Confidence 999999 56668887754321 12333444444333 2 23468999999999999999999999999999
Q ss_pred EEeccCCCCCC-------------------------CCCCccc-----------ccchhhh-------------------
Q 002164 788 IARSGAYNRTL-------------------------TPFGFQN-----------EDRTLWE------------------- 812 (958)
Q Consensus 788 v~~~~~~~~~~-------------------------~~~~~~~-----------~~~~~~~------------------- 812 (958)
+..++...... ....... .....+.
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (313)
T d1wm1a_ 131 VLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPS 210 (313)
T ss_dssp EEESCCCCCHHHHHHHHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred eecccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 98875432100 0000000 0000000
Q ss_pred -------cH---------H-HHHhcC---------cccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 002164 813 -------AT---------S-TYVEMS---------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCR 866 (958)
Q Consensus 813 -------~~---------~-~~~~~s---------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~ 866 (958)
.. . ...... .......+++|+|+++|++|..+| +..++++.+.+.. ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p--~~~~~~l~~~~p~----a~ 284 (313)
T d1wm1a_ 211 RESASFGEDDFALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQ--VQNAWDLAKAWPE----AE 284 (313)
T ss_dssp GGGGGGGCHHHHHHHHHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSC--HHHHHHHHHHCTT----SE
T ss_pred hhhhhhhhhhHHhhhhhhhhhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccC--HHHHHHHHHHCCC----CE
Confidence 00 0 000000 011233467999999999999998 8999888887754 48
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHhh
Q 002164 867 LVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (958)
Q Consensus 867 ~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (958)
+++++++||.+.. .+...++++.++++.
T Consensus 285 ~~~i~~aGH~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 285 LHIVEGAGHSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp EEEETTCCSSTTS----HHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCcCC----chHHHHHHHHHHHhc
Confidence 9999999997632 344556677777653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.49 E-value=2.7e-12 Score=137.71 Aligned_cols=306 Identities=9% Similarity=-0.043 Sum_probs=172.0
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCce-eeeccCCCCCcc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKL 191 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~-~~lt~~~~~~~~ 191 (958)
.|+||++|+++++...+ +.|.+||+.+ ++. +.++ ++.+...
T Consensus 1 g~a~~~~~~~l~~~~~~---------------------------------~~v~v~D~~t----~~~~~t~~-~~~~~~p 42 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP---------------------------------NNLHVVDVAS----DTVYKSCV-MPDKFGP 42 (346)
T ss_dssp CCCCCTTCEEEEEEETT---------------------------------TEEEEEETTT----TEEEEEEE-CSSCCSS
T ss_pred CccCCCCCcEEEEEcCC---------------------------------CEEEEEECCC----CCEEEEEE-cCCCCCc
Confidence 37899999999998875 4899999965 332 2222 3334457
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc--ccccccceEEecCCeEEEEEecCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY--LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~--~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
...+|||||++|+.+.. ....|++||+.+++........... .......++++|||+.+++........
T Consensus 43 ~~l~~spDG~~l~v~~~--------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~- 113 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNN--------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL- 113 (346)
T ss_dssp CEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC-
T ss_pred ceEEECCCCCEEEEEEC--------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce-
Confidence 78999999998876532 3568999999998765433222211 011134789999999998772110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecC----CCccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG----PPAVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~----~~~~~~~~~~SpDGk 344 (958)
... .. .....+.+++. +++..... .+.......+++|++
T Consensus 114 --------------------~~~-------~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 114 --------------------NDH-------YV---------VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp --------------------SSC-------EE---------ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred --------------------eee-------ec---------cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 000 00 02344667776 65432211 113445566778887
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEE-----
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE----- 418 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~----- 418 (958)
.++... ++.+|++.+... +.+... ...+...++|+|..++....
T Consensus 158 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (346)
T d1jmxb_ 158 LYVAGP----------------DIYKMDVKTGKYTVALPLR--------------NWNRKGYSAPDVLYFWPHQSPRHEF 207 (346)
T ss_dssp EEEESS----------------SEEEECTTTCCEEEEECST--------------TCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred EEEeCC----------------cceEEEccCCCEEEEEecC--------------CCccceEEeccccEEEEEecCCCce
Confidence 554322 677888875443 232221 12345567777776543100
Q ss_pred --------eccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 419 --------TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 419 --------~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
................+.+++. ..+..... ......+....+++++..+++... ..+.++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~v~d~ 279 (346)
T d1jmxb_ 208 SMLYTIARFKDDKQDPATADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-----NRLAKYDL 279 (346)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-----SEEEEEET
T ss_pred EeeeeeeeeccCceeEeeccCCceEEEEEC---CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-----CeEEEEEC
Confidence 0000000001122334677774 33333222 333445566788999999887643 24777787
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
.++ +....... ...+.. ++|||||++|+....+ ..|.+||+++++...-.
T Consensus 280 ~~~--~~~~~~~~-~~~~~~------va~s~DG~~l~v~~~d---------------------~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 280 KQR--KLIKAANL-DHTYYC------VAFDKKGDKLYLGGTF---------------------NDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp TTT--EEEEEEEC-SSCCCE------EEECSSSSCEEEESBS---------------------SEEEEEETTTTEEEEEE
T ss_pred CCC--cEEEEEcC-CCCEEE------EEEcCCCCEEEEEeCC---------------------CcEEEEECccCCEEEEE
Confidence 774 22222221 112222 8899999998876521 25999999988765443
Q ss_pred c
Q 002164 569 E 569 (958)
Q Consensus 569 ~ 569 (958)
.
T Consensus 330 ~ 330 (346)
T d1jmxb_ 330 K 330 (346)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=3.8e-13 Score=139.19 Aligned_cols=217 Identities=12% Similarity=0.121 Sum_probs=135.7
Q ss_pred cEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEE
Q 002164 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (958)
Q Consensus 638 ~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl 716 (958)
++|.+++++. .|..++..++.|. .|+|+++||....... ..|.... ...+..+.++++||
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~---------~pvlylLhG~~g~~~~---------~~w~~~~-~~~~~~~~~~~iVV 63 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG---------PHAVYLLDAFNAGPDV---------SNWVTAG-NAMNTLAGKGISVV 63 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS---------SSEEEEECCSSCCSSS---------CHHHHTS-CHHHHHTTSSSEEE
T ss_pred ceEEEEEecccCCceeeEEEECCC---------CCEEEEcCCCCCCCCc---------chhhhcc-HHHHHHhhCCeEEE
Confidence 4578888766 5778888776542 5999999994211000 0111111 23456677999999
Q ss_pred EcCCCCCCCCCCcc-c--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 717 GGPTTPIIGEGDEE-A--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 717 ~~~~~~~~G~G~~~-~--~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
.++. +..++.... . ...+.....+| .+.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++++|.
T Consensus 64 ~p~g-~~~~~y~~~~~~~~~~~~tfl~~e---L~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~ 139 (267)
T d1r88a_ 64 APAG-GAYSMYTNWEQDGSKQWDTFLSAE---LPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGF 139 (267)
T ss_dssp EECC-CTTSTTSBCSSCTTCBHHHHHHTH---HHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred EECC-CCCcCCccccccccccHHHHHHHH---HHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCc
Confidence 9765 222222221 1 12333334444 455677777789999999999999999999999999999999999998
Q ss_pred CCCCCCCCC------c----ccccchhhh--cHHHHHhcCcccccCCC---CCCEEEEeeCCCCCCCCC---------hH
Q 002164 794 YNRTLTPFG------F----QNEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTL---------TM 849 (958)
Q Consensus 794 ~~~~~~~~~------~----~~~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~---------~~ 849 (958)
++....... . .......|. ....+.+.+|..+++++ ..++++.+|.+|..+... ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~ 219 (267)
T d1r88a_ 140 LYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMG 219 (267)
T ss_dssp CCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHH
T ss_pred cCCCCccchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhh
Confidence 764321000 0 000011111 12234456666555443 467899999998765300 12
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeCCCCccC
Q 002164 850 QSDRFFNALKGH-GALCRLVILPFESHGY 877 (958)
Q Consensus 850 ~~~~~~~~l~~~-g~~~~~~~~p~~~H~~ 877 (958)
...++.++|+.. +.++++.+.++++|.+
T Consensus 220 ~~~~~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 220 NSRMFYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred hHHHHHHHHHHcCCCcEEEEEcCCCeECh
Confidence 355677788776 4688888888889975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=2e-12 Score=143.97 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=104.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC-CC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-GA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~-~~ 189 (958)
+..++|||||++|+..+.+ +.+.+|++.+.. .....++..... ..
T Consensus 64 ~~~v~fSpDG~~l~~~s~d---------------------------------g~v~~~d~~t~~-~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRD---------------------------------GKVNMIDLWMKE-PTTVAEIKIGSEARS 109 (432)
T ss_dssp EEEEEECTTSCEEEEEETT---------------------------------SEEEEEETTSSS-CCEEEEEECCSEEEE
T ss_pred eeEEEECCCCCEEEEEcCC---------------------------------CCEEEEEeeCCC-ceEEEEEecCCCCCC
Confidence 4578999999999877654 478899986521 112223321111 12
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccc-------cccccceEEecCCeEEEEEe
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCTI 262 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDG~~l~~~~ 262 (958)
.+..+.|||||++|+.+.. ....|.++|.++++............ ......+.+||||+.++++.
T Consensus 110 ~~~s~~~SpDG~~l~vs~~--------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp EEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred eEEecccCCCCCEEEEEcC--------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 4566789999999876542 25679999999998776543322110 00012345666666655541
Q ss_pred cCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee---eecCCCccccccc
Q 002164 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPPAVYTSLD 338 (958)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~---~~l~~~~~~~~~~ 338 (958)
. ...++++++. +++. ..+..+.....+.
T Consensus 182 ~------------------------------------------------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 182 K------------------------------------------------ETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp T------------------------------------------------TTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred c------------------------------------------------cCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 0 2346788887 5532 2333334556789
Q ss_pred cCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEe
Q 002164 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (958)
Q Consensus 339 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l 381 (958)
|||||+++++..... ..+.+++.+++.....
T Consensus 214 ~spdg~~~~va~~~~------------~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 214 LDGSHRYFITAANAR------------NKLVVIDTKEGKLVAI 244 (432)
T ss_dssp ECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEecccc------------ceEEEeecccceEEEE
Confidence 999999999887543 3788888887665443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=3.5e-12 Score=134.34 Aligned_cols=279 Identities=15% Similarity=0.139 Sum_probs=172.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.||++.+ + ...+.+..+ ..
T Consensus 19 ~I~~l~~sp~~~~l~s~s~D---------------------------------g~i~iWd~~~-~--~~~~~~~~h--~~ 60 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASED---------------------------------ATIKVWDYET-G--DFERTLKGH--TD 60 (317)
T ss_dssp CEEEEEECSSSSEEEEEESS---------------------------------SCEEEEETTT-C--CCCEEECCC--SS
T ss_pred CeEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCC-C--CEEEEEeCC--CC
Confidence 56789999999999987765 4799999854 3 234455432 34
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....|+|++..++.... ...+..++....+........... +....|+|+++.|+...
T Consensus 61 ~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------- 120 (317)
T d1vyhc1 61 SVQDISFDHSGKLLASCSA---------DMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSAS------- 120 (317)
T ss_dssp CEEEEEECTTSSEEEEEET---------TSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEE-------
T ss_pred cEEEEeeeccccccccccc---------cccccccccccccccccccccccc----ceeeeccCCCceEEeec-------
Confidence 6889999999999988653 345566666665554443333222 56788999999888661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDGk~l 346 (958)
....+.++++ ++.. ..+... ..+..++|+|||+.|
T Consensus 121 ------------------------------------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (317)
T d1vyhc1 121 ------------------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 158 (317)
T ss_dssp ------------------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------cCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence 1234666777 5543 333333 566788999999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe------
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET------ 419 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~------ 419 (958)
+..+.+ +.+.+|+...+.. ..+.... ..+..+.|+|++.........
T Consensus 159 ~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (317)
T d1vyhc1 159 ASCSND-------------QTVRVWVVATKECKAELREHR-------------HVVECISWAPESSYSSISEATGSETKK 212 (317)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EEEeCC-------------CeEEEEeeccceeeEEEecCC-------------CCceEEEEeeccccceeeccccceeee
Confidence 877633 4789999885543 3332211 223455666665543211000
Q ss_pred -ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 420 -QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 420 -~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
...+......+..+.+.+++. ..+.....+..+...+..+.|+|+|+.|+....++ .|.++++.++ +....
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~--~~~~~ 284 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----TLRVWDYKNK--RCMKT 284 (317)
T ss_dssp ----CCEEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT----EEEEECCTTS--CCCEE
T ss_pred eccCCceeEeccCCCEEEEEEC--CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC----eEEEEECCCC--cEEEE
Confidence 000000111234456888885 23333344455566778899999999988775433 3666677664 33444
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
.......+.. ++|+|||++|+...
T Consensus 285 ~~~h~~~V~~------~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 285 LNAHEHFVTS------LDFHKTAPYVVTGS 308 (317)
T ss_dssp EECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 4444444443 78999999988765
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=4.6e-12 Score=136.85 Aligned_cols=279 Identities=11% Similarity=0.007 Sum_probs=155.7
Q ss_pred eceeEEEccCCCCCCc-eeeeccCCCCCcccceeecCCCCeEEEEEeecc-ccCCCCCceEEEEEcCCCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~-~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~-~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 240 (958)
..+|+||..+ ++ ...+. . +....++|||||++|++...... ...+.....|++||+.+++.......+..
T Consensus 28 ~~v~v~D~~t----g~~~~~~~---~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~ 99 (355)
T d2bbkh_ 28 TQQFVIDGEA----GRVIGMID---G-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 99 (355)
T ss_dssp EEEEEEETTT----TEEEEEEE---E-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CeEEEEECCC----CcEEEEEE---C-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc
Confidence 4799999854 33 22332 2 23457899999999998764221 01112245799999999887654322211
Q ss_pred ---cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEE
Q 002164 241 ---YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLV 317 (958)
Q Consensus 241 ---~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~ 317 (958)
........++|+|||+.+++.... ....++
T Consensus 100 ~~~~~~~~~~~~~~s~dg~~~~v~~~~-----------------------------------------------~~~~~~ 132 (355)
T d2bbkh_ 100 PRFLVGTYPWMTSLTPDGKTLLFYQFS-----------------------------------------------PAPAVG 132 (355)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECS-----------------------------------------------SSCEEE
T ss_pred ceeecCCCCceEEEecCCCeeEEecCC-----------------------------------------------CCceee
Confidence 101113468899999999876211 112344
Q ss_pred EEEc-CCeee-ecCCC--------ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc
Q 002164 318 LVSL-DGTVK-EIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA 387 (958)
Q Consensus 318 ~~~~-~g~~~-~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~ 387 (958)
+++. +++.. .+... .....+.+++||+.+++..... ..+.+.+...... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~------------~~~~~~~~~~~~~--------~ 192 (355)
T d2bbkh_ 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE------------GTPEITHTEVFHP--------E 192 (355)
T ss_dssp EEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS------------SCCEEEECCCCSC--------T
T ss_pred eeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC------------CeEEEEecccccc--------e
Confidence 5555 44322 11111 2234567899999888776432 1333333321110 0
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-------------
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL------------- 454 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~------------- 454 (958)
. ........+++++..+++. +..+.+++++. .++....+...
T Consensus 193 ~---------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
T d2bbkh_ 193 D---------EFLINHPAYSQKAGRLVWP-------------TYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWR 247 (355)
T ss_dssp T---------SCBCSCCEEETTTTEEEEE-------------BTTSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEE
T ss_pred e---------cceeeeccccCCCCeEEEe-------------cCCCeEEEEec---CCCcEEEEeccCCcccceEeeeee
Confidence 0 0112345677777777663 44557888885 44444433111
Q ss_pred ccccCceeeecCCceEEEEEeccc------cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 455 DLRYGGISWCDDSLALVYESWYKT------RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
......+++++|++.++....... ....|+++|+.++. ....... ...... +.|||||+.+++..
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--~~~~~~~-~~~~~~------~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEM-GHEIDS------INVSQDEKPLLYAL 318 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEE-EEEECE------EEECCSSSCEEEEE
T ss_pred ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--EEEEecC-CCCEEE------EEEcCCCCeEEEEE
Confidence 112245889999999887764332 22578999988752 2221111 111222 78999999776655
Q ss_pred eeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEec
Q 002164 529 KKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (958)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~ 569 (958)
.. ....|++||+++|+..+-..
T Consensus 319 ~~-------------------~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 319 ST-------------------GDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEEEC
T ss_pred EC-------------------CCCEEEEEECCCCCEEEEEe
Confidence 21 11369999999998765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=5.7e-12 Score=134.58 Aligned_cols=285 Identities=13% Similarity=0.067 Sum_probs=149.2
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC--CCceeeccCCCCc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKARPLFQSPDI 240 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~--~g~~~~lt~~~~~ 240 (958)
..|.+|++..++ ..+.+.....+..+..++|||||++|+.+.. . ...|.+++++ ++..+........
T Consensus 14 ~~I~v~~~~~~~---~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~--d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 14 QQIHVWNLNHEG---ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------P--EFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp TEEEEEEECTTS---CEEEEEEEECSSCCCCEEECTTSSEEEEEET------T--TTEEEEEEECTTTCCEEEEEEEECS
T ss_pred CcEEEEEEcCCC---CeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------C--CCeEEEEEEeCCCCcEEEeeecccC
Confidence 478999996543 2223322223456889999999999976542 1 3345555544 3333332211111
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEE
Q 002164 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (958)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~ 320 (958)
.....++|+|||++|++... ....+..++
T Consensus 83 ---~~p~~l~~spDg~~l~v~~~------------------------------------------------~~~~v~~~~ 111 (333)
T d1ri6a_ 83 ---GSLTHISTDHQGQFVFVGSY------------------------------------------------NAGNVSVTR 111 (333)
T ss_dssp ---SCCSEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEE
T ss_pred ---CCceEEEEcCCCCEEeeccc------------------------------------------------CCCceeeec
Confidence 01447899999999987611 112244444
Q ss_pred c-CCe---eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccc
Q 002164 321 L-DGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFN 395 (958)
Q Consensus 321 ~-~g~---~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~ 395 (958)
. ++. ....... .....+.+||||++++...... ..+.+|+.................
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~------ 173 (333)
T d1ri6a_ 112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTT------ 173 (333)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEEC------
T ss_pred cccccceecccccCCCccceEEEeeecceeeecccccc------------ceeeEEEeccCCcceeeeceeeee------
Confidence 4 322 1122222 5567889999999998887442 367788776432111111000000
Q ss_pred ccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---e------eccccCceeeecC
Q 002164 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---K------LDLRYGGISWCDD 466 (958)
Q Consensus 396 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~------~~~~~~~~~~spD 466 (958)
.....++.+.|++++..++.... ..+...+++.. .......... . .......+.+++|
T Consensus 174 ~~g~~p~~i~~~~~~~~~~~~~~------------~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 240 (333)
T d1ri6a_ 174 VEGAGPRHMVFHPNEQYAYCVNE------------LNSSVDVWELK-DPHGNIECVQTLDMMPENFSDTRWAADIHITPD 240 (333)
T ss_dssp STTCCEEEEEECTTSSEEEEEET------------TTTEEEEEESS-CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred ecCCCccEEEEeccceeEEeecc------------ccCceEEEeec-ccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence 00123467899999987665311 12223333321 1222222211 1 1112234689999
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEE-eccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGA 545 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~ 545 (958)
|++++...... ....+|.++.++.. .... .........+ ++|||||++|+.....
T Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~------~a~spDGk~l~va~~~--------------- 296 (333)
T d1ri6a_ 241 GRHLYACDRTA-SLITVFSVSEDGSV--LSKEGFQPTETQPRG------FNVDHSGKYLIAAGQK--------------- 296 (333)
T ss_dssp SSEEEEEETTT-TEEEEEEECTTSCC--EEEEEEEECSSSCCC------EEECTTSSEEEEECTT---------------
T ss_pred cCceeeecccC-CeEEEEEEcCCCCE--EEEEEEeCCCCCeeE------EEEeCCCCEEEEEECC---------------
Confidence 99877665433 33678888766642 1221 1111111112 8899999998765311
Q ss_pred CCCCCCCeEEEEECCCCceEEE
Q 002164 546 TPEGNIPFLDLFDINTGSKERI 567 (958)
Q Consensus 546 ~~~~~~~~L~~~dl~~g~~~~l 567 (958)
.+.-.+|.+|.++|+.+++
T Consensus 297 ---~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 297 ---SHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp ---TCEEEEEEEETTTTEEEEE
T ss_pred ---CCeEEEEEEECCCCcEEEE
Confidence 1122466668888887655
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.47 E-value=1.8e-11 Score=128.42 Aligned_cols=267 Identities=10% Similarity=0.014 Sum_probs=166.6
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|.++|+++++..+....+.. ...++|||||++|+++..
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~~---------------------------------- 51 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA---------------------------------- 51 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEEC----------------------------------
Confidence 55799999999987655443332 457899999999986610
Q ss_pred hccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
....|.++|+ +++.. .+........+.|++||+.+++.... ...+.+|+..+
T Consensus 52 --------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 105 (301)
T d1l0qa2 52 --------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------------SSTLSVIDTTS 105 (301)
T ss_dssp --------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTT
T ss_pred --------------CCCEEEEEECCCCceeeeeeccccccccccccccccccccccc------------cceeeeccccc
Confidence 2346889999 77543 34333556778999999999887633 34788899886
Q ss_pred ceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec
Q 002164 376 IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD 455 (958)
Q Consensus 376 ~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~ 455 (958)
++........ .....+.|+|||+.+++.. .....+++++. ............
T Consensus 106 ~~~~~~~~~~-------------~~~~~~~~~~dg~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~ 157 (301)
T d1l0qa2 106 NTVAGTVKTG-------------KSPLGLALSPDGKKLYVTN------------NGDKTVSVINT---VTKAVINTVSVG 157 (301)
T ss_dssp TEEEEEEECS-------------SSEEEEEECTTSSEEEEEE------------TTTTEEEEEET---TTTEEEEEEECC
T ss_pred ceeeeecccc-------------ccceEEEeecCCCeeeeee------------ccccceeeeec---cccceeeecccC
Confidence 6543322211 2335688999999887741 22345677774 333333333333
Q ss_pred cccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCC
Q 002164 456 LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEG 535 (958)
Q Consensus 456 ~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 535 (958)
.....+.|+||++.++....... .++..+.... ......... ....+ +.++++|+.++....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~~~~g~~~~v~~~~----- 220 (301)
T d1l0qa2 158 RSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTN--SVIDTVKVE-AAPSG------IAVNPEGTKAYVTNVD----- 220 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTT---EEEEEETTTT--EEEEEEECS-SEEEE------EEECTTSSEEEEEEEC-----
T ss_pred CCceEEEeeccccceeeeccccc---ccccccccce--eeeeccccc-CCcce------eecccccccccccccc-----
Confidence 44566899999999887754432 3444444442 111211111 11111 6689999988766421
Q ss_pred cEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002164 536 TYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (958)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d 615 (958)
.....|++||+.+++.......... +. ..+|||||+++++.... ...|.++|
T Consensus 221 -------------~~~~~v~v~D~~t~~~~~~~~~~~~-----~~-------~va~spdg~~l~va~~~---~~~i~v~D 272 (301)
T d1l0qa2 221 -------------KYFNTVSMIDTGTNKITARIPVGPD-----PA-------GIAVTPDGKKVYVALSF---CNTVSVID 272 (301)
T ss_dssp -------------SSCCEEEEEETTTTEEEEEEECCSS-----EE-------EEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred -------------ceeeeeeeeecCCCeEEEEEcCCCC-----EE-------EEEEeCCCCEEEEEECC---CCeEEEEE
Confidence 1123699999998877654433321 12 25799999988776543 24689999
Q ss_pred CCCCCee
Q 002164 616 WPDKKSC 622 (958)
Q Consensus 616 ~~~g~~~ 622 (958)
+.+++..
T Consensus 273 ~~t~~~~ 279 (301)
T d1l0qa2 273 TATNTIT 279 (301)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9888643
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.47 E-value=7.2e-13 Score=138.94 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=125.5
Q ss_pred EEEEEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCC
Q 002164 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (958)
Q Consensus 641 ~~~~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~ 720 (958)
..+++. +|.+++.... + + -|+||++||.+.... .| ...+..| +++|.|++
T Consensus 10 ~~~~~~-~~~~l~y~~~---G-----~--gp~vv~lHG~~~~~~-----------~~----~~~~~~l-~~~~~vi~--- 59 (293)
T d1ehya_ 10 HYEVQL-PDVKIHYVRE---G-----A--GPTLLLLHGWPGFWW-----------EW----SKVIGPL-AEHYDVIV--- 59 (293)
T ss_dssp EEEEEC-SSCEEEEEEE---E-----C--SSEEEEECCSSCCGG-----------GG----HHHHHHH-HTTSEEEE---
T ss_pred ceEEEE-CCEEEEEEEE---C-----C--CCeEEEECCCCCCHH-----------HH----HHHHHHH-hcCCEEEE---
Confidence 344554 6788875543 1 2 467889999642211 11 1233344 56899999
Q ss_pred CCCCCCCCcccch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCC
Q 002164 721 TPIIGEGDEEAND------RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (958)
Q Consensus 721 ~~~~G~G~~~~~~------~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (958)
.|.+|+|.+.... ........|+.+.++. . +.+++.++||||||.+++.++.++|+++.++|+++++.
T Consensus 60 ~D~~G~G~s~~~~~~~~~~~~~~~~a~~~~~~~~~---l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 60 PDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDA---L---GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp ECCTTSTTSCCCCTTCGGGGCHHHHHHHHHHHHHH---T---TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred ecCCcccCCccccccccccccchhhhhHHHhhhhh---c---CccccccccccccccchhcccccCccccceeeeeeccC
Confidence 5556777654321 1233445555544332 2 33589999999999999999999999999999988753
Q ss_pred CCCCC-CCCc-----------cc---------cc----ch-------hh---------hcH-----------------HH
Q 002164 795 NRTLT-PFGF-----------QN---------ED----RT-------LW---------EAT-----------------ST 816 (958)
Q Consensus 795 ~~~~~-~~~~-----------~~---------~~----~~-------~~---------~~~-----------------~~ 816 (958)
..... .... .. .. .. .| ... ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (293)
T d1ehya_ 134 PDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNY 213 (293)
T ss_dssp TTC-----------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhh
Confidence 21000 0000 00 00 00 00 000 00
Q ss_pred HHh-cCcc------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHH
Q 002164 817 YVE-MSPF------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWE 889 (958)
Q Consensus 817 ~~~-~sp~------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~ 889 (958)
+.. ..+. .....+++|+|+++|++|..+| .....++.+.+. ..+++++++++||.+. .+..+.+.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~Pe~~~~~ 287 (293)
T d1ehya_ 214 YRANIRPDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY---SNYTMETIEDCGHFLM-VEKPEIAIDR 287 (293)
T ss_dssp HHHHSSSSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB---SSEEEEEETTCCSCHH-HHCHHHHHHH
T ss_pred hhhccccchhhhhhhhhhccCCceEEEEeCCCCCcC--HHHHHHHHHHhC---CCCEEEEECCCCCchH-HHCHHHHHHH
Confidence 000 0000 0123467899999999999988 777666655442 3589999999999763 4556677777
Q ss_pred HHHHH
Q 002164 890 TDRWL 894 (958)
Q Consensus 890 i~~fl 894 (958)
|.+||
T Consensus 288 I~~Ff 292 (293)
T d1ehya_ 288 IKTAF 292 (293)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 77775
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.2e-13 Score=142.30 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=109.1
Q ss_pred HHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 002164 705 VLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (958)
Q Consensus 705 ~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (958)
+..| +.||.|++ .|.+|+|.+...... .+.|+ ++.+... ..+++.++|||+||.+++.+|.++|+++
T Consensus 31 ~~~L-~~~~~vi~---~D~~G~G~S~~~~~~---~~~d~---~~~~~~~---~~~~~~l~GhS~Gg~ia~~~a~~~p~~~ 97 (256)
T d1m33a_ 31 DEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLADM---AEAVLQQ---APDKAIWLGWSLGGLVASQIALTHPERV 97 (256)
T ss_dssp HHHH-HTTSEEEE---ECCTTSTTCCSCCCC---CHHHH---HHHHHTT---SCSSEEEEEETHHHHHHHHHHHHCGGGE
T ss_pred HHHH-hCCCEEEE---EeCCCCCCccccccc---ccccc---ccccccc---cccceeeeecccchHHHHHHHHhCCccc
Confidence 4455 46899999 566688877543221 12232 2333333 2368999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCC-C-Cccc----------------------------ccc--hhhh-------------------c
Q 002164 785 CCGIARSGAYNRTLTP-F-GFQN----------------------------EDR--TLWE-------------------A 813 (958)
Q Consensus 785 ~a~v~~~~~~~~~~~~-~-~~~~----------------------------~~~--~~~~-------------------~ 813 (958)
++++.+.+........ + .... ... .... .
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (256)
T d1m33a_ 98 RALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGG 177 (256)
T ss_dssp EEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred ceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccchhhHHHHHHHhhhhcchhhHHHHHhh
Confidence 9998876432111100 0 0000 000 0000 0
Q ss_pred HHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002164 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (958)
Q Consensus 814 ~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~f 893 (958)
...+...+....++++++|+|+++|++|..+| ++.+.++.+.++ ..++++++++||.+ ..++.+++.+.+.+|
T Consensus 178 ~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~l~~~~~----~~~~~~i~~~gH~~-~~e~p~~~~~~l~~f 250 (256)
T d1m33a_ 178 LEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP----HSESYIFAKAAHAP-FISHPAEFCHLLVAL 250 (256)
T ss_dssp HHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTCT----TCEEEEETTCCSCH-HHHSHHHHHHHHHHH
T ss_pred hhhhcccchHHHHHhccCCccccccccCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCch-HHHCHHHHHHHHHHH
Confidence 01112233445567889999999999999998 777666655443 35899999999976 356677888888888
Q ss_pred HHH
Q 002164 894 LQK 896 (958)
Q Consensus 894 l~~ 896 (958)
+++
T Consensus 251 l~~ 253 (256)
T d1m33a_ 251 KQR 253 (256)
T ss_dssp HTT
T ss_pred HHH
Confidence 875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.46 E-value=6.9e-11 Score=128.47 Aligned_cols=313 Identities=11% Similarity=-0.006 Sum_probs=171.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....++||||++|++... ........||++|.++|+.......+. ...++|||||+.|++........
T Consensus 22 p~~~~a~spdg~~~~~~~~----~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~- 90 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLP----AHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRI- 90 (373)
T ss_pred CccccccCCCCCEEEEEcc----cccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCcc-
Confidence 5677889999999987642 123456789999999988765433222 23689999999999873211110
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeec-CCC--------cccccccc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP--------AVYTSLDP 339 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-~~~--------~~~~~~~~ 339 (958)
. .. .....|.++|+ +++.... ..+ .....+.|
T Consensus 91 --------------------~---------~~---------~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 91 --------------------A---------KG---------KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred --------------------c---------cc---------ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 0 00 02245777787 6654322 211 12245789
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
||||+.+++..... .+.+.+++........... ....+.++|||+.+++..
T Consensus 133 s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~g~~~~v~~-- 183 (373)
T d2madh_ 133 TPNNADLLFFQFAA-----------GPAVGLVVQGGSSDDQLLS----------------SPTCYHIHPGAPSTFYLL-- 183 (373)
T ss_pred EeCCCcEEEEEEcC-----------CCceEEeeccCCeEEEEec----------------cceeEEEecCCCcEEEEE--
Confidence 99999988776331 2356677776544322211 224678999999876531
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEE-Eee------ccccCceeeecCCceEEEEEeccccceEEEEEcCCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKL------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKD 492 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~ 492 (958)
...+.+++++. .++..... ... ........+++++..++.. . + ..++.++..+..
T Consensus 184 ----------~~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~v~~~~~~~~~ 245 (373)
T d2madh_ 184 ----------CAQGGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y-S---GKILQADISAAG 245 (373)
T ss_pred ----------cCCCeEEEEEc---CCceeeEEEeeeccccCccceeeeEEECCCceEEEec-C-C---ceEEEEEcCCCe
Confidence 23456777774 33333222 111 1111234555555544332 1 1 234444444421
Q ss_pred CCcEEEeccCCcccc----CCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe
Q 002164 493 VAPRILFDRSSEDVY----SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 493 ~~~~~~~~~~~~~~~----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
.......+....... .........+++||+++++.... +..+.... ....+.+||+.+++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~-------~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE----QSAWKLHA-------AAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC----CceEEeec-------CCCeEEEEECCCCcEEEEe
Confidence 111111111100000 00011125789999888766521 22222111 1236899999988866554
Q ss_pred cCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
..... .. ...|||||+.+++...+.. ..++++|+.+|+...
T Consensus 315 ~~~~~-----~~-------~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 315 SLGHD-----VD-------AISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQ 355 (373)
T ss_pred cCCCC-----ee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEE
Confidence 43322 11 2579999998776554433 569999999987543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=6e-12 Score=135.91 Aligned_cols=315 Identities=12% Similarity=0.099 Sum_probs=174.0
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
+.||||+++++... ........||++|+++|+......... ...++|||||+.|+++......
T Consensus 8 a~spdg~~~~v~~~----~~~~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~~------- 70 (355)
T d2bbkh_ 8 APAPDARRVYVNDP----AHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSR------- 70 (355)
T ss_dssp CCCCCTTEEEEEEC----GGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEE-------
T ss_pred eeCCCCCEEEEEec----ccCCCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCCcc-------
Confidence 45899999966532 122345689999999998765443332 3368999999999876210000
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cC--CC------ccccccccCCCCc
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IG--PP------AVYTSLDPSPDEK 344 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~--~~------~~~~~~~~SpDGk 344 (958)
.. .. .....|+++|+ +++... +. .. .....+.|||||+
T Consensus 71 --------------~~---------~g---------~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 118 (355)
T d2bbkh_ 71 --------------IA---------RG---------ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118 (355)
T ss_dssp --------------TT---------EE---------EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred --------------cc---------cc---------CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence 00 00 02346888888 765432 21 10 2335678999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc-ccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
++++..... ...+.+++..+++.......+.. ...+ ......+.+++||+.+++..
T Consensus 119 ~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~v~~------ 175 (355)
T d2bbkh_ 119 TLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHIFP------TAPDTFFMHCRDGSLAKVAF------ 175 (355)
T ss_dssp EEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEEEE------EETTEEEEEETTSCEEEEEC------
T ss_pred eeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceEee------cCCcceEEEcCCCCEEEEEe------
Confidence 998876332 23678888886654332222111 1001 12334578899998776631
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
.....+.+.+. ..... ........+.+++++..+++.... ..++++++.++........+...
T Consensus 176 ------~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 176 ------GTEGTPEITHT---EVFHP----EDEFLINHPAYSQKAGRLVWPTYT----GKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp ------CSSSCCEEEEC---CCCSC----TTSCBCSCCEEETTTTEEEEEBTT----SEEEEEECTTSSCEECCCEESSC
T ss_pred ------cCCCeEEEEec---ccccc----eecceeeeccccCCCCeEEEecCC----CeEEEEecCCCcEEEEeccCCcc
Confidence 11222333332 11100 111223456788888888877433 35778887765221111111111
Q ss_pred ccc----cCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCccccccee
Q 002164 504 EDV----YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (958)
Q Consensus 504 ~~~----~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~ 579 (958)
... ....+...+.+++||+.++....... ..........|++||+.+++.......... +
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~-----~ 302 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRD-----------EWRHKTASRFVVVLDAKTGERLAKFEMGHE-----I 302 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECC-----------TTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----E
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCC-----------ceeecCCCCeEEEEeCCCCcEEEEecCCCC-----E
Confidence 000 00112223778999988877664321 001111234799999998887654432221 1
Q ss_pred EeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
. ..+|||||+.+++...... ..|+++|..+|+...
T Consensus 303 ~-------~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 303 D-------SINVSQDEKPLLYALSTGD--KTLYIHDAESGEELR 337 (355)
T ss_dssp C-------EEEECCSSSCEEEEEETTT--TEEEEEETTTCCEEE
T ss_pred E-------EEEEcCCCCeEEEEEECCC--CEEEEEECCCCCEEE
Confidence 1 2579999998776655433 679999999987543
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.45 E-value=9.3e-14 Score=144.66 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=127.7
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE-eccC-CCCCCCCCC------cccccchhhhcHHHHHhcCcccc
Q 002164 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA-RSGA-YNRTLTPFG------FQNEDRTLWEATSTYVEMSPFMS 825 (958)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~sp~~~ 825 (958)
.-+||+||+|+|+|+||+||+.++..+|++|++++. +++. +........ .......++...+.+...++...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 358999999999999999999999999999975433 3332 211110000 00011112222222333333333
Q ss_pred cCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCC--CcEEEEEeCCCCccCCCcc-----c-------------HHH
Q 002164 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--ALCRLVILPFESHGYAARE-----S-------------IMH 885 (958)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~~~~~~~~p~~~H~~~~~~-----~-------------~~~ 885 (958)
....+.|+||+||++|.+|| +.++.+++++|+..+ .+++++.+++++|.+.-.. + ..+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vp--p~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fpT~~~g~g~~~c~~~~~pyi~~C~~d 163 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hccCCCCEEEEecCCCCCcC--HHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCCCCCCCcccccccccCChhhhcCCCc
Confidence 34456899999999999999 999999999998864 4799999999999872110 0 123
Q ss_pred HHHHHHHHHHHhhccCCC-CCCc---ccccCcccccCCCCCCCccEEEecCCCCc--cccceeeeecccccc
Q 002164 886 VLWETDRWLQKYCVSNTA-DRST---DLKVSKDDESKGAPHLQNKTVAASGGGGT--EADFEHDGCHLAPRS 951 (958)
Q Consensus 886 ~~~~i~~fl~~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 951 (958)
...+|++||---|..... .... .++|..... .....++..++++.+|.. ..|..|+++|=|..+
T Consensus 164 ~a~~iL~~~yg~~~~~~~~~~~~~~~~f~q~~~~~--~~~~~~~gy~YvP~~~~~~~~~~~l~v~~Hgc~q~ 233 (318)
T d2d81a1 164 GAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSYG--ANGMDTTGYLYVPQSCASGATVCSLHVALHGCLQS 233 (318)
T ss_dssp HHHHHHHHHHSSCCCCCCSSCSSEEEEEECCGGGC--CTTBCSEEEEEECHHHHSSSSCEEEEEEECCTTCS
T ss_pred HHHHHHHHHhcccCcccCCCCCCcccccCCccccc--CCCCccceEEEeCcccccCCCCCceEEEEecCCCc
Confidence 457888888877754322 1122 255554322 235678889999999855 459999999988764
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=2e-12 Score=134.76 Aligned_cols=218 Identities=12% Similarity=0.105 Sum_probs=132.8
Q ss_pred CcEEEEEEEeC-CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEE
Q 002164 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (958)
Q Consensus 637 ~~~~~~~~~~~-dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~v 715 (958)
++++.+++++. -|..|+..+. .+ ++|+|+++||.+..... ..|... ....+.++++|++|
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~--~~-------~~p~lyllhG~~g~~d~---------~~W~~~-~~~~~~~~~~~~iv 64 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ--GG-------GPHAVYLLDGLRAQDDY---------NGWDIN-TPAFEEYYQSGLSV 64 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE--CC-------SSSEEEECCCTTCCSSS---------CHHHHH-SCHHHHHTTSSSEE
T ss_pred cEEEEEEEecccCCCcceEEee--CC-------CCCEEEECCCCCCCCcc---------chhhhc-chHHHHHHhCCcEE
Confidence 46777788765 5677776652 11 37999999995311000 011100 12345677899999
Q ss_pred EEcCCCCCCCCCCcc----------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 002164 716 LGGPTTPIIGEGDEE----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (958)
Q Consensus 716 l~~~~~~~~G~G~~~----------~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 785 (958)
|.++.. ..++.... ....+....++ +.+.+|.++..+|+++++|+|+||||++|+.+|.++|++|+
T Consensus 65 V~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~ 140 (280)
T d1dqza_ 65 IMPVGG-QSSFYTDWYQPSQSNGQNYTYKWETFLTR---EMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFP 140 (280)
T ss_dssp EEECCC-TTCTTSBCSSSCTTTTCCSCCBHHHHHHT---HHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCS
T ss_pred EEECCC-CCCcCccccCCcccccCCcchhHHHHHHH---HHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCcee
Confidence 997652 11111110 11223333444 44556667777899999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCc----------ccccchhhh--cHHHHHhcCcccccCCC---CCCEEEEeeCCCCCCCC----
Q 002164 786 CGIARSGAYNRTLTPFGF----------QNEDRTLWE--ATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGT---- 846 (958)
Q Consensus 786 a~v~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~---- 846 (958)
++++++|.++........ ......++. ....+...+|...++++ ..++++.+|..|...+.
T Consensus 141 av~s~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 220 (280)
T d1dqza_ 141 YAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNI 220 (280)
T ss_dssp EEEEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSH
T ss_pred EEEEecCccCcccCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCcccccccc
Confidence 999999987643221100 000011111 11234556776666554 36889999988865421
Q ss_pred --------ChHHHHHHHHHHHhCCCcEEEEE-eCCCCccC
Q 002164 847 --------LTMQSDRFFNALKGHGALCRLVI-LPFESHGY 877 (958)
Q Consensus 847 --------~~~~~~~~~~~l~~~g~~~~~~~-~p~~~H~~ 877 (958)
....+.++.++|+..|+...... .++++|.+
T Consensus 221 ~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 221 PAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCc
Confidence 02345678888988886544444 45668975
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=1.3e-10 Score=121.89 Aligned_cols=273 Identities=11% Similarity=0.088 Sum_probs=162.5
Q ss_pred eeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEE
Q 002164 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (958)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (958)
...|.++. ..+...+|||||+.|+.... ...|.+|++.+++........... +..++|+|++..+
T Consensus 10 ~~~L~GH~--~~I~~l~~sp~~~~l~s~s~---------Dg~i~iWd~~~~~~~~~~~~h~~~----V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 10 KYALSGHR--SPVTRVIFHPVFSVMVSASE---------DATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLL 74 (317)
T ss_dssp SCEEECCS--SCEEEEEECSSSSEEEEEES---------SSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEE
T ss_pred cEEEcCCC--CCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCCEEEEEeCCCCc----EEEEeeecccccc
Confidence 34566643 56899999999998887542 567888999988765544333322 7789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee-ecCCC-cccc
Q 002164 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYT 335 (958)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~ 335 (958)
+..... ..+...+. ..+.. .+... ....
T Consensus 75 ~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (317)
T d1vyhc1 75 ASCSAD-------------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVS 105 (317)
T ss_dssp EEEETT-------------------------------------------------SCCCEEETTSSCEEECCCCCSSCEE
T ss_pred cccccc-------------------------------------------------cccccccccccccccccccccccce
Confidence 876211 11223333 33222 22222 5567
Q ss_pred ccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCCCCce
Q 002164 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (958)
Q Consensus 336 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~ 414 (958)
...|+||++.++....+ +.+.+|++.++. ...+.... .....+.|+|||+.++
T Consensus 106 ~~~~~~~~~~~~~~~~d-------------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 106 SVSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTLIA 159 (317)
T ss_dssp EEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSEEE
T ss_pred eeeccCCCceEEeeccC-------------cceeEeecccceeeeEEccCC-------------CcceeeecccCCCEEE
Confidence 78899999999877633 488999998544 33333221 2346788999999776
Q ss_pred EEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCc--------------------eEEEEE
Q 002164 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL--------------------ALVYES 474 (958)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~--------------------~l~~~~ 474 (958)
.. +..+.+.+++. ..+.....+......+..+.|+|++. .++..
T Consensus 160 ~~-------------~~d~~v~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (317)
T d1vyhc1 160 SC-------------SNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG- 223 (317)
T ss_dssp EE-------------ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-
T ss_pred EE-------------eCCCeEEEEee--ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-
Confidence 53 34556777775 22222233333333344455555543 23322
Q ss_pred eccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeE
Q 002164 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (958)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 554 (958)
..+ ..+..++..++ +...........+.. +.|+|+|++|+....+ ..|
T Consensus 224 ~~d---~~i~~~~~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~s~~~d---------------------g~i 271 (317)
T d1vyhc1 224 SRD---KTIKMWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTL 271 (317)
T ss_dssp ETT---SEEEEEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEE
T ss_pred cCC---CEEEEEECCCC--cEEEEEeCCCCCEEE------EEECCCCCEEEEEECC---------------------CeE
Confidence 222 23555566553 223333333333333 7899999998876521 259
Q ss_pred EEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEE
Q 002164 555 DLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILT 600 (958)
Q Consensus 555 ~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 600 (958)
.+||+.+++.......... .+. ..+|++|++.|+.
T Consensus 272 ~iwd~~~~~~~~~~~~h~~----~V~-------~~~~s~~~~~l~s 306 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNAHEH----FVT-------SLDFHKTAPYVVT 306 (317)
T ss_dssp EEECCTTSCCCEEEECCSS----CEE-------EEEECSSSSCEEE
T ss_pred EEEECCCCcEEEEEcCCCC----CEE-------EEEEcCCCCEEEE
Confidence 9999988876555543221 122 2468899886654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=8.5e-11 Score=128.32 Aligned_cols=288 Identities=13% Similarity=0.133 Sum_probs=165.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCC--------------ccccccccceEEecC
Q 002164 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD--------------IYLNAIFDNFVWVNN 254 (958)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~--------------~~~~~~~~~~~wspD 254 (958)
..+...+|||||++||... ...|.+|++.+++......... ......+..++|+||
T Consensus 63 ~~V~~l~fs~dg~~lasg~----------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CcEEEEEECCCCCEEEEEe----------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 5789999999999887632 3368888988776533211110 001122567899999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCC-
Q 002164 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP- 331 (958)
Q Consensus 255 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~- 331 (958)
|++|+... ....|.+++. .++... +...
T Consensus 133 ~~~l~s~~-------------------------------------------------~dg~v~i~~~~~~~~~~~~~~h~ 163 (388)
T d1erja_ 133 GKFLATGA-------------------------------------------------EDRLIRIWDIENRKIVMILQGHE 163 (388)
T ss_dssp SSEEEEEE-------------------------------------------------TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCcceecc-------------------------------------------------ccccccccccccccccccccccc
Confidence 99998762 1234667777 664333 3323
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeee-cCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~s-pDG 410 (958)
..+....|++++..++..+.. +.+.+||..+.......... .......|+ +||
T Consensus 164 ~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 217 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIE-------------DGVTTVAVSPGDG 217 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSTTC
T ss_pred ccccccccccccccccccccc-------------eeeeeeeccccccccccccc-------------cccccccccCCCC
Confidence 667888999999999887633 48999999876544332211 111233444 467
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-------eeccccCceeeecCCceEEEEEeccccceEE
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (958)
+.++.. +..+.+++++. ..+.....+. .....+..+.|+|+|+.|+..+.++. .++
T Consensus 218 ~~l~~~-------------~~d~~i~i~~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~--i~i 280 (388)
T d1erja_ 218 KYIAAG-------------SLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS--VKL 280 (388)
T ss_dssp CEEEEE-------------ETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE--EEE
T ss_pred CeEEEE-------------cCCCeEEEeec--ccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc--EEE
Confidence 666552 34556888885 2333233331 12345677899999998887654332 445
Q ss_pred EEEcCCCCCCCc----------EEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCe
Q 002164 484 WVISPGSKDVAP----------RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (958)
Q Consensus 484 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (958)
| ++..+.... ..........+.. ++|+|+|++|+....+ ..
T Consensus 281 w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~sg~~d---------------------g~ 331 (388)
T d1erja_ 281 W--NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------RG 331 (388)
T ss_dssp E--EC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------SE
T ss_pred E--eccCCccccccccccccceeeecccccceEEE------EEECCCCCEEEEEeCC---------------------CE
Confidence 5 443321110 1111111112222 7899999988877521 25
Q ss_pred EEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002164 554 LDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (958)
Q Consensus 554 L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~ 616 (958)
|++||+.+++.......... .+..+ .......|+||++.++. ... ...|.+|++
T Consensus 332 i~vwd~~~~~~~~~l~~H~~----~V~~~-~~~~~~~~spd~~~l~s-~s~---Dg~I~iW~~ 385 (388)
T d1erja_ 332 VLFWDKKSGNPLLMLQGHRN----SVISV-AVANGSSLGPEYNVFAT-GSG---DCKARIWKY 385 (388)
T ss_dssp EEEEETTTCCEEEEEECCSS----CEEEE-EECSSCTTCTTCEEEEE-EET---TSEEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCC----CEEEE-EEecCcccCCCCCEEEE-EeC---CCEEEEEee
Confidence 99999999887665543322 12221 11123468999876553 332 245777764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.37 E-value=1.3e-11 Score=134.48 Aligned_cols=232 Identities=13% Similarity=0.108 Sum_probs=136.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+...+|||||+.||+.. .+..|.+|+.++++...+....+ ....+..++|+|||++|+...
T Consensus 9 pIt~~~~s~dg~~la~~~---------~~~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~s------- 70 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCG------- 70 (371)
T ss_dssp CCCEEEECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEE-------
T ss_pred CeEEEEECCCCCEEEEEe---------CCCEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEEE-------
Confidence 478889999999999854 24578888888876544332111 011278999999999988661
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee---ecCCC-ccccccccCCCCc
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGPP-AVYTSLDPSPDEK 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~l~~~-~~~~~~~~SpDGk 344 (958)
....|.++++ ++... .+... ..+..+.|+|||+
T Consensus 71 ------------------------------------------~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 108 (371)
T d1k8kc_ 71 ------------------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108 (371)
T ss_dssp ------------------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred ------------------------------------------CCCeEEEEeecccccccccccccccccccccccccccc
Confidence 1123556666 55322 22233 6678899999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
+|+..+.+ +.+.+|+.+............ ......+..+.|+|||+.|+..
T Consensus 109 ~l~~~s~d-------------~~i~i~~~~~~~~~~~~~~~~--------~~~~~~v~~v~~~p~~~~l~s~-------- 159 (371)
T d1k8kc_ 109 KFAVGSGS-------------RVISICYFEQENDWWVCKHIK--------KPIRSTVLSLDWHPNSVLLAAG-------- 159 (371)
T ss_dssp EEEEEETT-------------SSEEEEEEETTTTEEEEEEEC--------TTCCSCEEEEEECTTSSEEEEE--------
T ss_pred cceeeccc-------------Ccceeeeeecccccccccccc--------cccccccccccccccccceecc--------
Confidence 99988743 367788776432111111000 0111345678999999987652
Q ss_pred cccccccCCeEEEEeCCCCCCCC-------------ceEE---EeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEG-------------PEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-------------~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
+..+.+.+|+........ ...+ ......+..++|+|||+.|+..+.++ .|.++|.
T Consensus 160 -----s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~----~i~iwd~ 230 (371)
T d1k8kc_ 160 -----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS----TVCLADA 230 (371)
T ss_dssp -----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT----EEEEEEG
T ss_pred -----ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC----cceEEee
Confidence 334456666641100000 0111 22234456789999999988776433 3555565
Q ss_pred CCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
..+ ............+.+ +.|+|||+.|+.+
T Consensus 231 ~~~--~~~~~~~~~~~~v~s------~~fs~d~~~la~g 261 (371)
T d1k8kc_ 231 DKK--MAVATLASETLPLLA------VTFITESSLVAAG 261 (371)
T ss_dssp GGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred ecc--cceeeeeccccccee------eeecCCCCEEEEE
Confidence 553 223323333333333 7899999877654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=6.7e-11 Score=126.56 Aligned_cols=293 Identities=10% Similarity=-0.031 Sum_probs=161.2
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
|++|+||++|+.... ...|.+||+++++..+-...+... ....++|+|||++|+++..
T Consensus 2 ~a~~~~~~~l~~~~~---------~~~v~v~D~~t~~~~~t~~~~~~~---~p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY---------PNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEET---------TTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcC---------CCEEEEEECCCCCEEEEEEcCCCC---CcceEEECCCCCEEEEEEC----------
Confidence 789999999998653 568999999999876533322211 1458999999999987610
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCC-------ccccccccCCCCc
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-------AVYTSLDPSPDEK 344 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-------~~~~~~~~SpDGk 344 (958)
....|+++|+ +++... +... .....++|||||+
T Consensus 60 --------------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~ 101 (346)
T d1jmxb_ 60 --------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK 101 (346)
T ss_dssp --------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred --------------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC
Confidence 2245888888 774432 2111 2345788999999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
++++......... .-.......+.+++..++.. ..+.... .......+.+++|++.++.
T Consensus 102 ~l~v~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-------- 161 (346)
T d1jmxb_ 102 EVYATVNPTQRLN-DHYVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQVYLMRAADDGSLYVA-------- 161 (346)
T ss_dssp EEEEEEEEEEECS-SCEEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSCCCEEECTTSCEEEE--------
T ss_pred EEEEEecCCccee-eeeccCcceEEEEecccceeeeEEEeee-----------ccCceEEEEecCCCEEEEe--------
Confidence 9988764321100 00011234566777664322 1111100 0122334556666653322
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccc----------------------cce
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT----------------------RRT 481 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~----------------------~~~ 481 (958)
...+.+++. ..++...............++|++..++....... ...
T Consensus 162 --------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 162 --------GPDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp --------SSSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred --------CCcceEEEc---cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 123556664 33333222222333456677887776543321111 112
Q ss_pred EEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCC
Q 002164 482 RTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINT 561 (958)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~ 561 (958)
.+..++...+... ..........+.. ..+++++..+++... ..+++||+.+
T Consensus 231 ~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------------------~~v~v~d~~~ 281 (346)
T d1jmxb_ 231 GYLSVDLKTGKTH-TQEFADLTELYFT------GLRSPKDPNQIYGVL----------------------NRLAKYDLKQ 281 (346)
T ss_dssp EEEEEETTTCCEE-EEEEEECSSCEEE------EEECSSCTTEEEEEE----------------------SEEEEEETTT
T ss_pred eEEEEECCCCceE-EEEeecccceeEE------EEEeCCCCEEEEecC----------------------CeEEEEECCC
Confidence 3455555553211 1111111111111 456788877776542 1589999998
Q ss_pred CceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 562 GSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 562 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
++..+....... + ...+||+||++++..... ..+.++|+.+++..
T Consensus 282 ~~~~~~~~~~~~-----~-------~~va~s~DG~~l~v~~~d----~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 282 RKLIKAANLDHT-----Y-------YCVAFDKKGDKLYLGGTF----NDLAVFNPDTLEKV 326 (346)
T ss_dssp TEEEEEEECSSC-----C-------CEEEECSSSSCEEEESBS----SEEEEEETTTTEEE
T ss_pred CcEEEEEcCCCC-----E-------EEEEEcCCCCEEEEEeCC----CcEEEEECccCCEE
Confidence 887655443321 1 135799999988765432 56999999887643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.7e-10 Score=122.82 Aligned_cols=301 Identities=10% Similarity=0.075 Sum_probs=153.2
Q ss_pred CeEEEEEeeccccCCCCCceEEEEEcCC-Ccee--eccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002164 201 KHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (958)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~~~~~-g~~~--~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (958)
|+++|+.... ...|++|+++. +... +....+.. +..++|||||++|+++..
T Consensus 3 ~~~v~v~~~~-------~~~I~v~~~~~~~~l~~~~~~~~~~~-----v~~la~spDG~~L~v~~~-------------- 56 (333)
T d1ri6a_ 3 KQTVYIASPE-------SQQIHVWNLNHEGALTLTQVVDVPGQ-----VQPMVVSPDKRYLYVGVR-------------- 56 (333)
T ss_dssp EEEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEECSSC-----CCCEEECTTSSEEEEEET--------------
T ss_pred ceEEEEECCC-------CCcEEEEEEcCCCCeEEEEEEcCCCC-----EeEEEEeCCCCEEEEEEC--------------
Confidence 4667766422 55677777654 2222 33333332 678999999999986611
Q ss_pred CCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecCC---CccccccccCCCCcEEEEEee
Q 002164 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGP---PAVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~~---~~~~~~~~~SpDGk~l~~~~~ 351 (958)
....|.++++ ++..+.+.. ......++|||||++|++...
T Consensus 57 ----------------------------------~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~ 102 (333)
T d1ri6a_ 57 ----------------------------------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY 102 (333)
T ss_dssp ----------------------------------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred ----------------------------------CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc
Confidence 1122444444 233333221 134567899999999988763
Q ss_pred cCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCccccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP 431 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 431 (958)
. ...+.+|+.+............. ...+..+.++|||+.++... ..
T Consensus 103 ~------------~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~s~d~~~~~~~~------------~~ 148 (333)
T d1ri6a_ 103 N------------AGNVSVTRLEDGLPVGVVDVVEG----------LDGCHSANISPDNRTLWVPA------------LK 148 (333)
T ss_dssp T------------TTEEEEEEEETTEEEEEEEEECC----------CTTBCCCEECTTSSEEEEEE------------GG
T ss_pred C------------CCceeeeccccccceecccccCC----------CccceEEEeeecceeeeccc------------cc
Confidence 3 23777887775544333221111 13346788999999877631 12
Q ss_pred CCeEEEEeCCCCCCCCceEEEe-----e-ccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCcc
Q 002164 432 RDIIYTQQAEPVQGEGPEILHK-----L-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (958)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~-----~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 505 (958)
...+.+++. ........... . ......++|+++++.++....... ...++.++..................
T Consensus 149 ~~~i~~~~~--~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 225 (333)
T d1ri6a_ 149 QDRICLFTV--SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS-SVDVWELKDPHGNIECVQTLDMMPEN 225 (333)
T ss_dssp GTEEEEEEE--CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT-EEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cceeeEEEe--ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC-ceEEEeecccccceeeeeeeeeeecC
Confidence 345666664 12222211111 1 112245789999988766643332 24566655544321111111111111
Q ss_pred ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCC
Q 002164 506 VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSD 585 (958)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~ 585 (958)
.........+.+++||++++...... +...++.++.+++.......... ...
T Consensus 226 ~~~~~~~~~~~~s~d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 277 (333)
T d1ri6a_ 226 FSDTRWAADIHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLSKEGFQPT----------ETQ 277 (333)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEEEEEEEEC----------SSS
T ss_pred CCccccceeEEEecccCceeeecccC------------------CeEEEEEEcCCCCEEEEEEEeCC----------CCC
Confidence 11111111256899999877654211 11123333333332222211110 001
Q ss_pred CccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEeecC
Q 002164 586 QTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDF 627 (958)
Q Consensus 586 ~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~Lt~~ 627 (958)
-...+|||||+++++..+ ....-.+|.+|..+|+.+++...
T Consensus 278 p~~~a~spDGk~l~va~~-~~~~v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 278 PRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp CCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEEEEE
T ss_pred eeEEEEeCCCCEEEEEEC-CCCeEEEEEEECCCCcEEEEEec
Confidence 113579999998765533 22234577788888887776544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=3.5e-10 Score=120.24 Aligned_cols=291 Identities=11% Similarity=-0.055 Sum_probs=158.8
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc-
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~- 241 (958)
++|.+||+.+ + .....+.....+.....++|||||++|+.+. .....|++||+++++...-.......
T Consensus 11 ~~v~v~D~~s-~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~--------~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 11 DKLVVIDTEK-M--AVDKVITIADAGPTPMVPMVAPGGRIAYATV--------NKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp TEEEEEETTT-T--EEEEEEECTTCTTCCCCEEECTTSSEEEEEE--------TTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred CEEEEEECCC-C--eEEEEEECCCCCCCccEEEECCCCCEEEEEE--------CCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 4899999965 1 1233343222234677899999999887653 23568999999998875433222210
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
.......++|+|||+.++......... .. ... .....+.+++.
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~-------------------~~-----------~~~-------~~~~~~~~~d~ 122 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLE-------------------LT-----------HFE-------VQPTRVALYDA 122 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEEC-------------------SS-----------CEE-------ECCCEEEEEET
T ss_pred cccceeeEEEcCCCcEEEEeecCCcce-------------------ee-----------ecc-------ccccceeeccc
Confidence 011144789999999998772111000 00 000 02345777888
Q ss_pred -CCeeeecC-CCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccccccccc
Q 002164 322 -DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (958)
Q Consensus 322 -~g~~~~l~-~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~ 399 (958)
+++..... ....+..++|||||++++... .++.+||...++.........
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~~~~~d~~~~~~~~~~~~~~------------- 174 (337)
T d1pbyb_ 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQS------------- 174 (337)
T ss_dssp TTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTT-------------
T ss_pred cCCeEEEeccccCCceEEEEcCCCCEEEEEc---------------CCcceeeeecCcEEEEeecCC-------------
Confidence 77544333 335667889999999998764 156778887655433221110
Q ss_pred CcceeeeecCCCCceE----------E-EEeccCCCcccccccCCeEEEEeCCCCCCCCceEE--EeeccccCceeeecC
Q 002164 400 GMRSINWRSDKPSTLY----------W-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDD 466 (958)
Q Consensus 400 ~~~~~~~spDG~~l~~----------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spD 466 (958)
......++|++..+.. . ..................+++++. ..+..... ...........++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (337)
T d1pbyb_ 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECTT
T ss_pred ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc---CCCcEEEEEecCCCcceEEEEeccc
Confidence 0112223344332211 0 111000011111123345777875 33443332 223334455788999
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
++.++... ..+.++|+.++ +....... ...+.+ +.|||||++|+....
T Consensus 252 ~~~~~~~~------~~i~v~d~~~~--~~~~~~~~-~~~~~~------~~~s~dG~~l~v~~~----------------- 299 (337)
T d1pbyb_ 252 KTRAFGAY------NVLESFDLEKN--ASIKRVPL-PHSYYS------VNVSTDGSTVWLGGA----------------- 299 (337)
T ss_dssp SSEEEEEE------SEEEEEETTTT--EEEEEEEC-SSCCCE------EEECTTSCEEEEESB-----------------
T ss_pred ceEEEEcc------ccEEEEECCCC--cEEEEEcC-CCCEEE------EEECCCCCEEEEEeC-----------------
Confidence 98876542 34777788774 22222211 112222 789999999876542
Q ss_pred CCCCCCeEEEEECCCCceEEEe
Q 002164 547 PEGNIPFLDLFDINTGSKERIW 568 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~ 568 (958)
...|.+||+++++...-.
T Consensus 300 ----~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 300 ----LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp ----SSEEEEEETTTCCEEEEE
T ss_pred ----CCcEEEEECCCCcEEEEE
Confidence 125999999988765433
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=7e-10 Score=122.97 Aligned_cols=206 Identities=10% Similarity=-0.045 Sum_probs=127.8
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
+.+..|.+.+.++... ....|.++|+++++.......+.. +..++|||||++|+++.
T Consensus 24 ~~~~~~~~~~~~v~~~-------d~g~v~v~D~~t~~v~~~~~~g~~-----~~~v~fSpDG~~l~~~s----------- 80 (432)
T d1qksa2 24 QMNDWDLENLFSVTLR-------DAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIG----------- 80 (432)
T ss_dssp CCSCCCGGGEEEEEET-------TTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEE-----------
T ss_pred eeecCCCCcEEEEEEc-------CCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEEc-----------
Confidence 3445566667665532 367899999999988766544432 66899999999998761
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeee---ecCC---C-ccccccccCCCCcE
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK---EIGP---P-AVYTSLDPSPDEKY 345 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~---~l~~---~-~~~~~~~~SpDGk~ 345 (958)
....+.++|+ +++.. .+.. + +.+.++.|||||++
T Consensus 81 --------------------------------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~ 122 (432)
T d1qksa2 81 --------------------------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122 (432)
T ss_dssp --------------------------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred --------------------------------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence 1234777887 65422 2222 1 44567899999999
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+.+... ++.+.+||.++++............... ..........+.+||||+.+++.
T Consensus 123 l~vs~~~------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~s~dg~~~~vs--------- 180 (432)
T d1qksa2 123 AIAGAYW------------PPQYVIMDGETLEPKKIQSTRGMTYDEQ-EYHPEPRVAAILASHYRPEFIVN--------- 180 (432)
T ss_dssp EEEEEEE------------TTEEEEEETTTCCEEEEEECCEECTTTC-CEESCCCEEEEEECSSSSEEEEE---------
T ss_pred EEEEcCC------------CCeEEEEeCccccceeeeccCCccccce-eccCCCceeEEEECCCCCEEEEE---------
Confidence 9877644 3489999999776554433221110000 00011223457789999887663
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEE--eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
....+.+++++. ...+...+. ........+.|+|||++++....... .+..++.+..
T Consensus 181 ---~~~~~~i~~~d~---~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~---~v~v~d~~~~ 239 (432)
T d1qksa2 181 ---VKETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN---KLVVIDTKEG 239 (432)
T ss_dssp ---ETTTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT---EEEEEETTTT
T ss_pred ---EccCCeEEEEEc---cCCCcceEEEEcccCccccceECCCCCEEEEeccccc---eEEEeecccc
Confidence 234567888885 333332332 22223456899999999888765543 5777777663
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.34 E-value=3.5e-14 Score=151.52 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=126.8
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~ 731 (958)
+.+..+.|.+ ..+.|+ |++||++..+..+..+. .. ...+++.|+++||.|++ .|.+|+|.+..
T Consensus 46 ~~v~~~~p~~-----~~~~Pv-vllHG~~~~~~~w~~~~----~~----~~~~~~~~~~~Gy~V~~---~D~~G~G~S~~ 108 (318)
T d1qlwa_ 46 MYVRYQIPQR-----AKRYPI-TLIHGCCLTGMTWETTP----DG----RMGWDEYFLRKGYSTYV---IDQSGRGRSAT 108 (318)
T ss_dssp EEEEEEEETT-----CCSSCE-EEECCTTCCGGGGSSCT----TS----CCCHHHHHHHTTCCEEE---EECTTSTTSCC
T ss_pred EEEEEECCCC-----CCCCcE-EEECCCCCCcCccccCc----cc----chhHHHHHHhCCCEEEE---ecCCCCCCCCC
Confidence 4455667754 224775 55899876544322211 11 12457789999999999 55567777643
Q ss_pred chhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee-EEEEeccCCCCC---CCCCC---
Q 002164 732 NDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC-CGIARSGAYNRT---LTPFG--- 802 (958)
Q Consensus 732 ~~~~--~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~~~~~~~---~~~~~--- 802 (958)
.... ......++.+.+ +.-.....++++.|||+||.++..++...+.... ..+..++..... .....
T Consensus 109 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (318)
T d1qlwa_ 109 DISAINAVKLGKAPASSL----PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVA 184 (318)
T ss_dssp CCHHHHHHHTTSSCGGGS----CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHH
T ss_pred ccccCCHHHHHHHHHHHH----HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHH
Confidence 3211 111111111111 1111233567788999999888777665433211 111111111100 00000
Q ss_pred ----------------cccccchhhhcH----H---------HHHhcCcccccCCCCCCEEEEeeCCCCCCCCChH----
Q 002164 803 ----------------FQNEDRTLWEAT----S---------TYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM---- 849 (958)
Q Consensus 803 ----------------~~~~~~~~~~~~----~---------~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~---- 849 (958)
........|... + .+....+......+++|+|++||++|.++| ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p--~~~~~~ 262 (318)
T d1qlwa_ 185 NLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFP--RWAPRL 262 (318)
T ss_dssp HHHHHHHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCT--TTHHHH
T ss_pred HHHHHHhhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccC--hhhhHH
Confidence 000000000000 0 011123455666778999999999999987 53
Q ss_pred -HHHHHHHHHHhCCCcEEEEEeC-----CCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 850 -QSDRFFNALKGHGALCRLVILP-----FESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 850 -~~~~~~~~l~~~g~~~~~~~~p-----~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.+..+++++++.|.+++++.+| |++|.+....+.+++.+.|.+||+++
T Consensus 263 ~~~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 263 KACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 3557888999999999999987 56799866667789999999999986
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=7.1e-11 Score=125.90 Aligned_cols=263 Identities=9% Similarity=0.069 Sum_probs=151.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.||++.. + .....+.. +..
T Consensus 57 ~I~~l~~s~~~~~l~sgs~D---------------------------------g~v~iWd~~~-~--~~~~~~~~--~~~ 98 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSASQD---------------------------------GKLIIWDSYT-T--NKVHAIPL--RSS 98 (340)
T ss_dssp CEEEEEECTTSSEEEEEETT---------------------------------TEEEEEETTT-T--EEEEEEEC--SCS
T ss_pred CEEEEEECCCCCEEEEEECC---------------------------------Cceeeeeccc-c--eeEEEEec--ccc
Confidence 46788999999999988875 4799999854 2 22334433 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCcee-----eccCCCCccccccccceEEecCCeEEEEEecC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-----PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (958)
.+...+|+|||+.|+.... ...+.+++....... .+...... .....+..+...+...
T Consensus 99 ~v~~v~~~~~~~~l~~~~~---------d~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--- 161 (340)
T d1tbga_ 99 WVMTCAYAPSGNYVACGGL---------DNICSIYNLKTREGNVRVSRELAGHTGY-----LSCCRFLDDNQIVTSS--- 161 (340)
T ss_dssp CEEEEEECTTSSEEEEEET---------TCCEEEEESSSSCSCCCEEEEECCCSSC-----EEEEEEEETTEEEEEE---
T ss_pred cEEeeEeeccceeeeeecc---------cceeecccccccccccccceeccccccc-----cccccccccccccccc---
Confidence 6889999999999988652 445666665443211 11111110 1122233333332222
Q ss_pred CCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccCC
Q 002164 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSP 341 (958)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~Sp 341 (958)
.......... ... ....... ..+....+.+
T Consensus 162 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (340)
T d1tbga_ 162 -----------------------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp -----------------------------------------------TTTEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred -----------------------------------------------ccccccccccccccccccccccceeEeeecccc
Confidence 0011222222 211 1111111 4455667788
Q ss_pred CCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 342 DGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
++..++.... ++.+.+||+..+... .+..+ ...+..++|+|||+.++..
T Consensus 195 ~~~~~~~~~~-------------d~~v~i~d~~~~~~~~~~~~h-------------~~~i~~v~~~p~~~~l~s~---- 244 (340)
T d1tbga_ 195 DTRLFVSGAC-------------DASAKLWDVREGMCRQTFTGH-------------ESDINAICFFPNGNAFATG---- 244 (340)
T ss_dssp TSSEEEEEET-------------TTEEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEE----
T ss_pred ccceeEEeec-------------CceEEEEECCCCcEEEEEeCC-------------CCCeEEEEECCCCCEEEEE----
Confidence 8887776653 348999999865543 33221 1345689999999987763
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCc-eEEE--eeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEE
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 497 (958)
+..+.+.+++. ..... ..+. .....+..+.|+|+|+.|+.....+ .|+++|+.++ +...
T Consensus 245 ---------s~d~~i~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd~~~~--~~~~ 306 (340)
T d1tbga_ 245 ---------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA--DRAG 306 (340)
T ss_dssp ---------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS----CEEEEETTTC--CEEE
T ss_pred ---------eCCCeEEEEee---cccccccccccccccCceEEEEECCCCCEEEEEECCC----EEEEEECCCC--cEEE
Confidence 34567888885 32222 2221 1233456789999999888765443 2556666654 3344
Q ss_pred EeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
....+...+.. ++|+|||++|+...
T Consensus 307 ~~~~H~~~V~~------l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 307 VLAGHDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp EECCCSSCEEE------EEECTTSSCEEEEE
T ss_pred EEcCCCCCEEE------EEEeCCCCEEEEEc
Confidence 44444444444 78999999988765
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.33 E-value=3.8e-12 Score=130.25 Aligned_cols=194 Identities=12% Similarity=0.021 Sum_probs=111.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~ 749 (958)
.|+||++||.+.... .| ...+..|++.||.|++ .|.+|+|.+........... ..+.+.
T Consensus 16 ~P~ivllHG~~~~~~-----------~~----~~~~~~L~~~g~~vi~---~Dl~G~G~s~~~~~~~~~~~---~~~~~~ 74 (264)
T d1r3da_ 16 TPLVVLVHGLLGSGA-----------DW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEA---VEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTCCGG-----------GG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHH---HHHHHH
T ss_pred CCeEEEeCCCCCCHH-----------HH----HHHHHHHHhCCCEEEE---Eecccccccccccccccchh---hhhhhh
Confidence 688999999642211 11 2445677889999999 66678887754332211111 112222
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCCCC---------------------------
Q 002164 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG--------------------------- 802 (958)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~--------------------------- 802 (958)
+........+++.++|||+||.+++.++.+.|+.+..++..............
T Consensus 75 ~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T d1r3da_ 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLS 154 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cccccccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 22222345578999999999999999999999888777765432211100000
Q ss_pred -------cccccchhhh------------cH-HHHHhc------CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHH
Q 002164 803 -------FQNEDRTLWE------------AT-STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (958)
Q Consensus 803 -------~~~~~~~~~~------------~~-~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (958)
+......... .. ...... .....+..+++|+|+++|++|..+. ++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~~-------~~~~ 227 (264)
T d1r3da_ 155 DWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLAE 227 (264)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHHH
T ss_pred hhhhhhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHHH-------HHHh
Confidence 0000000000 00 000000 1122345678999999999996532 1222
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 857 ~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
. . .++++++|++||... .++.+.+.+.|.+||+..
T Consensus 228 ~-~----~~~~~~i~~~gH~~~-~e~P~~~~~~i~~fl~~l 262 (264)
T d1r3da_ 228 S-S----GLSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp H-H----CSEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred c-C----CCeEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 1 1 358889999999864 566788889999999875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=1.2e-10 Score=126.57 Aligned_cols=265 Identities=12% Similarity=-0.070 Sum_probs=141.5
Q ss_pred eceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeecc-ccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 163 ~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~-~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
.+||+++..+ ++...... ......++|||||+.|++...... ...+.....|++||+.+++.......+...
T Consensus 46 ~~~~~~d~~~----~~~~~~~~---~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 46 TENWVSCAGC----GVTLGHSL---GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEEETTT----TEEEEEEE---ECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred ceEEEEeCCC----CcEEEEEe---CCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 3789988744 43332221 122456899999999999765321 122233556999999998765443222110
Q ss_pred ---ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEE
Q 002164 242 ---LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (958)
Q Consensus 242 ---~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~ 318 (958)
.......++|||||++|++... ....+++
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~------------------------------------------------~~~~v~~ 150 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLF------------------------------------------------GSSAAAG 150 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEEC------------------------------------------------SSSCEEE
T ss_pred eecccCCccceEECCCCCEEEEEeC------------------------------------------------CCCeEEE
Confidence 0001337899999999997721 1123555
Q ss_pred EEc-CCeeee-cCCC--------ccccccccCCCCcEEEEEeecCCccccc-------------------c----CCCCC
Q 002164 319 VSL-DGTVKE-IGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIV-------------------P----CGRFP 365 (958)
Q Consensus 319 ~~~-~g~~~~-l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~-------------------~----~~~~~ 365 (958)
+|+ +++... +... +....+.+++||+.+++........... + .....
T Consensus 151 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (368)
T d1mdah_ 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA 230 (368)
T ss_dssp EEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS
T ss_pred EECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC
Confidence 555 443221 1110 1223355666776665554322100000 0 00112
Q ss_pred ceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCC
Q 002164 366 RQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG 445 (958)
Q Consensus 366 ~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 445 (958)
+.+++++..++....+..................+...++++||++.+++....... ........++++|. .+
T Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~----~~~~~~~~v~v~D~---~t 303 (368)
T d1mdah_ 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR----SCLAAAENTSSVTA---SV 303 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS----CTTSCEEEEEEEES---SS
T ss_pred CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc----eeecCCceEEEEEC---CC
Confidence 356666666555544433222111000011112344678999999988775433211 11122356899996 44
Q ss_pred CCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
++.............+.|||||+.++|.++... ..|+++|+.++
T Consensus 304 ~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tg 347 (368)
T d1mdah_ 304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGT--EVLDIYDAASD 347 (368)
T ss_dssp CCEEECCEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEESSSC
T ss_pred CcEeEEecCCCceeEEEECCCCCEEEEEEeCCC--CeEEEEECCCC
Confidence 433222223345677999999998888876554 46888998875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=4e-10 Score=119.95 Aligned_cols=250 Identities=13% Similarity=0.047 Sum_probs=141.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccC-CCCCCceeeeccCCCCC
Q 002164 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-dg~~~~~~~lt~~~~~~ 189 (958)
...++|+|+|+.||+...+ .+.++.+.. +........++++. ..
T Consensus 20 ~t~l~~~~~~~~la~~~~~----------------------------------~~~i~~~~~~~~~~~~~~~~~gh~-~~ 64 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGK----------------------------------SAFVRCLDDGDSKVPPVVQFTGHG-SS 64 (325)
T ss_dssp CCCCEEETTTTEEEEEETT----------------------------------EEEEEECCSSCCSSCSEEEECTTT-TS
T ss_pred eEEEEECCCCCEEEEEeCC----------------------------------CEEEEEEeCCCCCccceEEEeCCC-CC
Confidence 3578999999999998754 334444421 11112233343321 23
Q ss_pred cccceeecC--CCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCC-C---ccccccccceEEecCCeEEEEEec
Q 002164 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP-D---IYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 190 ~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~-~---~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
.+...+||| ||++|+... . ...|.+|+...++........ . ......+..++|++||+.|+....
T Consensus 65 ~v~~v~fsP~~~g~~lasgs-------~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 135 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGD-------E--SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEE-------T--TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred CEEEEEEeeCCCCCEEEEEe-------C--CCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence 688899998 566766543 2 445666665443211100000 0 000112668999999999987621
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC-ccccccccC
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPS 340 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~S 340 (958)
. ....+.+++. +|+ ...+... ..+..++|+
T Consensus 136 ~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 136 G-----------------------------------------------RDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp C-----------------------------------------------SSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred c-----------------------------------------------ccceEEEEeecccccceeeeeccccccccccc
Confidence 1 1112344455 553 3444433 667889999
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEe
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~ 419 (958)
|+++.++++... ++.+.+|+....+. ..+..... ....+..+.|+||+..+++.
T Consensus 169 ~~~~~~~~~~~~------------d~~v~~~d~~~~~~~~~~~~~~~----------~~~~v~~v~~~pd~~~~l~s--- 223 (325)
T d1pgua1 169 QSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHHK----------QGSFVRDVEFSPDSGEFVIT--- 223 (325)
T ss_dssp SSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSSC----------TTCCEEEEEECSTTCCEEEE---
T ss_pred ccccceEEEeec------------ccccccccccccccceecccccC----------CCCccEEeeeccccceeccc---
Confidence 999987665533 34789999875443 22222211 11345778999986655543
Q ss_pred ccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee---cCCceEEEEEeccccceEEEEEcCCCC
Q 002164 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC---DDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s---pDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
.+..+.|.+|+. ..+.....+..+...+..+.|+ |||++|+..+.++. |.++|+.++
T Consensus 224 ---------~~~d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~----i~iwd~~~~ 283 (325)
T d1pgua1 224 ---------VGSDRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT----IRVWDVTTS 283 (325)
T ss_dssp ---------EETTCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE----EEEEETTTT
T ss_pred ---------cccccceeeeee--ccccccccccccccccccceeeeeccCCCEEEEEeCCCe----EEEEECCCC
Confidence 134557889985 2333334444445556666777 78998887664432 444566553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=3.9e-10 Score=122.37 Aligned_cols=312 Identities=6% Similarity=-0.100 Sum_probs=165.5
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
.+.+|||+..+.+. .....+..+||++|.++++....+.... ...++|+|||+.|++........
T Consensus 25 ~a~~~~~~~~~v~~----~~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~----- 89 (368)
T d1mdah_ 25 HGPGAISRRSHITL----PAYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARS----- 89 (368)
T ss_dssp CCCCCCTTEEEEEE----CTTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTT-----
T ss_pred cccCCCCcceeEEe----eccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccc-----
Confidence 34567787654432 1235567899999999999877665444 33689999999999872110000
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cC--C------CccccccccCCCC
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IG--P------PAVYTSLDPSPDE 343 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~--~------~~~~~~~~~SpDG 343 (958)
.... ....|.++|. +++... +. . ......++|||||
T Consensus 90 -------------------------~~g~---------~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG 135 (368)
T d1mdah_ 90 -------------------------AKGK---------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp -------------------------TSSS---------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred -------------------------cccc---------cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence 0000 2345888888 664332 21 1 1223468899999
Q ss_pred cEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCC
Q 002164 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (958)
Q Consensus 344 k~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 423 (958)
|+|++.... ++.+.+||+.+++.......+..... ........+.+++||+.+++....
T Consensus 136 k~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~Dg~~~~~~~~~---- 194 (368)
T d1mdah_ 136 ACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFHI-----HPGAAATHYLGSCPASLAASDLAA---- 194 (368)
T ss_dssp SCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCCC-----EEEETTEEECCCCTTSCEEEECCS----
T ss_pred CEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcceE-----ccCCCceEEEEcCCCCEEEEEecC----
Confidence 999987633 34899999997765443332211100 000122345667777655542110
Q ss_pred CcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
.....++... .. ....+.......++++|..++-. . .+++.++...+ ....+.....
T Consensus 195 -------~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~g~~~~~~---~---~~v~~~~~~~~--~~~~~~~~~~ 251 (368)
T d1mdah_ 195 -------APAAAGIVGA---QC-----TGAQNCSSQAAQANYPGMLVWAV---A---SSILQGDIPAA--GATMKAAIDG 251 (368)
T ss_dssp -------SCCCCEECCC---CS-----CTTSCBCSCCEEETTTTEEEECB---S---SCCEEEECCSS--CCEEECCCCS
T ss_pred -------Cceeeeeeec---cc-----ccccccceeecccccCcEEEEec---C---CCEEEEeecCC--ceEEEeeccc
Confidence 0111111110 00 00112223345666776543311 1 23556665553 2222211110
Q ss_pred cc------ccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccc
Q 002164 504 ED------VYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (958)
Q Consensus 504 ~~------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~ 577 (958)
.. .+...+...+.++|+++.++...... .........+|++||..+++..........
T Consensus 252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~------------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---- 315 (368)
T d1mdah_ 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH------------SRSCLAAAENTSSVTASVGQTSGPISNGHD---- 315 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC------------SSCTTSCEEEEEEEESSSCCEEECCEEEEE----
T ss_pred ccceeeeeeecCCCceeEEEcCCCCEEEEEecCC------------CceeecCCceEEEEECCCCcEeEEecCCCc----
Confidence 00 00111223367889988776655321 111112235799999999876544332211
Q ss_pred eeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEe
Q 002164 578 TTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQI 624 (958)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~L 624 (958)
+. ..+|||||+.++|...... ..++++|..+|+....
T Consensus 316 -~~-------~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 316 -SD-------AIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSS 352 (368)
T ss_dssp -EC-------EEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEE
T ss_pred -ee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 11 2579999997766665433 5699999999876543
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.26 E-value=3.9e-11 Score=125.25 Aligned_cols=210 Identities=10% Similarity=-0.010 Sum_probs=119.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
+|.+++.... + + .|.||++||.+..... |.. .+..| +.+|.|++ .|.+|+|
T Consensus 16 ~g~~i~y~~~---G-----~--g~~vvllHG~~~~~~~-----------~~~----~~~~L-~~~~~vi~---~Dl~G~G 66 (298)
T d1mj5a_ 16 KGRRMAYIDE---G-----T--GDPILFQHGNPTSSYL-----------WRN----IMPHC-AGLGRLIA---CDLIGMG 66 (298)
T ss_dssp TTEEEEEEEE---S-----C--SSEEEEECCTTCCGGG-----------GTT----TGGGG-TTSSEEEE---ECCTTST
T ss_pred CCEEEEEEEE---c-----C--CCcEEEECCCCCCHHH-----------HHH----HHHHH-hcCCEEEE---EeCCCCC
Confidence 8899886543 2 1 3678899997533221 111 12233 46789999 5566777
Q ss_pred Ccccchhh--HH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccCCCCCCCC-CCc
Q 002164 728 DEEANDRF--VE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FGF 803 (958)
Q Consensus 728 ~~~~~~~~--~~-~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~~ 803 (958)
.+...... .. ....+....+..+.+.. ..+++.++|||+||.+++.++.++|+++++++...+........ +..
T Consensus 67 ~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~~ 144 (298)
T d1mj5a_ 67 DSDKLDPSGPERYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPE 144 (298)
T ss_dssp TSCCCSSCSTTSSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCG
T ss_pred CCCCCccccccccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhhh
Confidence 76442111 11 11112222222333432 34689999999999999999999999999999877643211100 000
Q ss_pred cc---------------------------------c-cchhh-----------hcHHHH------------------Hhc
Q 002164 804 QN---------------------------------E-DRTLW-----------EATSTY------------------VEM 820 (958)
Q Consensus 804 ~~---------------------------------~-~~~~~-----------~~~~~~------------------~~~ 820 (958)
.. . ....+ ...... ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298)
T d1mj5a_ 145 QDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIAR 224 (298)
T ss_dssp GGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhhh
Confidence 00 0 00000 000000 000
Q ss_pred CcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002164 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (958)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (958)
.....+.++++|+|+++|++|...+ ....++.+.+ ...++++. ++||.+. .+..+++.+.|.+||++.
T Consensus 225 ~~~~~~~~~~~P~l~i~g~~d~~~~---~~~~~~~~~~----p~~~~~~~-~~GH~~~-~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 225 DYAGWLSESPIPKLFINAEPGALTT---GRMRDFCRTW----PNQTEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp HHHHHHTTCCSCEEEEEEEECSSSS---HHHHHHHTTC----SSEEEEEE-EESSCGG-GTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcceeEEEEecCCCCcCh---HHHHHHHHHC----CCCEEEEe-CCCCchH-HhCHHHHHHHHHHHHhhh
Confidence 0112345778999999999998654 4444443332 23566555 5699874 567788999999999885
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.21 E-value=2.5e-09 Score=113.49 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=51.8
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
..+.|.++. ..+...+|||||++|+... ....|.+||+.+++........... +..++|+|||+.
T Consensus 47 ~~~tL~GH~--~~I~~l~~s~~~~~l~sgs---------~Dg~v~iWd~~~~~~~~~~~~~~~~----v~~v~~~~~~~~ 111 (340)
T d1tbga_ 47 TRRTLRGHL--AKIYAMHWGTDSRLLVSAS---------QDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNY 111 (340)
T ss_dssp EEEEECCCS--SCEEEEEECTTSSEEEEEE---------TTTEEEEEETTTTEEEEEEECSCSC----EEEEEECTTSSE
T ss_pred eeEEECCCC--CCEEEEEECCCCCEEEEEE---------CCCceeeeecccceeEEEEeccccc----EEeeEeecccee
Confidence 345566644 5699999999999998855 2568999999988765544333322 778999999999
Q ss_pred EEEE
Q 002164 258 LVCT 261 (958)
Q Consensus 258 l~~~ 261 (958)
|+..
T Consensus 112 l~~~ 115 (340)
T d1tbga_ 112 VACG 115 (340)
T ss_dssp EEEE
T ss_pred eeee
Confidence 9877
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=1.6e-09 Score=114.86 Aligned_cols=258 Identities=12% Similarity=-0.028 Sum_probs=143.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCC--
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD-- 187 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~-- 187 (958)
.+..++|||||++|+.+... . +.|++|++.+ + .....+.....
T Consensus 35 ~~~~i~~spDg~~l~v~~~~----------------------~----------~~v~v~D~~t-~--~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNK----------------------S----------ESLVKIDLVT-G--ETLGRIDLSTPEE 79 (337)
T ss_dssp CCCCEEECTTSSEEEEEETT----------------------T----------TEEEEEETTT-C--CEEEEEECCBTTE
T ss_pred CccEEEECCCCCEEEEEECC----------------------C----------CeEEEEECCC-C--cEEEEEecCCCcc
Confidence 35689999999998765432 1 3689999865 2 12222321110
Q ss_pred -CCcccceeecCCCCeEEEEEeecc---ccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEec
Q 002164 188 -GAKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (958)
Q Consensus 188 -~~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (958)
+......+|||||++++....... .........+.+++..+++.......... +..++|+|||++++...
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~- 153 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGSKLYGLG- 153 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSSCEEEES-
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-----ceEEEEcCCCCEEEEEc-
Confidence 124567899999999988764321 11112356788899998877655443332 56889999999998761
Q ss_pred CCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeee-cCCCccccccccCC
Q 002164 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSP 341 (958)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~Sp 341 (958)
..+..++. +++... +..........++|
T Consensus 154 --------------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 183 (337)
T d1pbyb_ 154 --------------------------------------------------RDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183 (337)
T ss_dssp --------------------------------------------------SSEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred --------------------------------------------------CCcceeeeecCcEEEEeecCCccccceecC
Confidence 11344555 443322 21112233344555
Q ss_pred CCcEEEEEeecCC-----------ccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 342 DEKYILISSIHRP-----------YSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 342 DGk~l~~~~~~~~-----------~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
++..+........ .............+.+++...+........+. ........++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 252 (337)
T d1pbyb_ 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-----------DVFYFSTAVNPAK 252 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-----------SSCEEEEEECTTS
T ss_pred CcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC-----------CcceEEEEecccc
Confidence 5554322211100 00000011122356777776554333221111 1233456788888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
..++.. .+.+.+||+ ..++..........+..++|||||++|+... .+ ..|.++|+.+
T Consensus 253 ~~~~~~---------------~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~-~~---~~i~v~D~~t 310 (337)
T d1pbyb_ 253 TRAFGA---------------YNVLESFDL---EKNASIKRVPLPHSYYSVNVSTDGSTVWLGG-AL---GDLAAYDAET 310 (337)
T ss_dssp SEEEEE---------------ESEEEEEET---TTTEEEEEEECSSCCCEEEECTTSCEEEEES-BS---SEEEEEETTT
T ss_pred eEEEEc---------------cccEEEEEC---CCCcEEEEEcCCCCEEEEEECCCCCEEEEEe-CC---CcEEEEECCC
Confidence 766542 346888996 4333333334455667899999999987653 22 3488888887
Q ss_pred C
Q 002164 491 K 491 (958)
Q Consensus 491 ~ 491 (958)
.
T Consensus 311 ~ 311 (337)
T d1pbyb_ 311 L 311 (337)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=4.4e-08 Score=103.65 Aligned_cols=170 Identities=10% Similarity=-0.004 Sum_probs=98.5
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
+.+..++|+|||++|+..+... ...+.+|+.+.+. ...+..+ ...+..+.|+|++
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~ 171 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGR-----------DNFGVFISWDSGNSLGEVSGH-------------SQRINACHLKQSR 171 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCS-----------SCSEEEEETTTCCEEEECCSC-------------SSCEEEEEECSSS
T ss_pred CcEEEEEECCCCCccceeeccc-----------cceEEEEeecccccceeeeec-------------ccccccccccccc
Confidence 5677899999999999887442 2356677777443 3333321 1345678999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE---eeccccCceeeecCCceEEEEEeccccceEEEEEc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 487 (958)
+.+++. .+.++.+.+|+. ..++....+. .....+..++|+||+..++.+...++ .|.+++
T Consensus 172 ~~~~~~------------~~~d~~v~~~d~--~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iwd 234 (325)
T d1pgua1 172 PMRSMT------------VGDDGSVVFYQG--PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCFD 234 (325)
T ss_dssp SCEEEE------------EETTTEEEEEET--TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEEE
T ss_pred cceEEE------------eecccccccccc--cccccceecccccCCCCccEEeeeccccceecccccccc---ceeeee
Confidence 886653 134557888885 1121112221 12233567899998655554444443 245556
Q ss_pred CCCCCCCcEEEeccCCccccCCCCCCceEec---cCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCce
Q 002164 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRT---STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (958)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~ 564 (958)
...+ +...........+.+ ..|+ |||++|+....+ ..|.+||+.+++.
T Consensus 235 ~~~~--~~~~~l~~~~~~v~~------~~~s~~~~dg~~l~s~s~D---------------------~~i~iwd~~~~~~ 285 (325)
T d1pgua1 235 GKSG--EFLKYIEDDQEPVQG------GIFALSWLDSQKFATVGAD---------------------ATIRVWDVTTSKC 285 (325)
T ss_dssp TTTC--CEEEECCBTTBCCCS------CEEEEEESSSSEEEEEETT---------------------SEEEEEETTTTEE
T ss_pred eccc--ccccccccccccccc------ceeeeeccCCCEEEEEeCC---------------------CeEEEEECCCCCE
Confidence 6553 333333332222222 3344 789888776521 2599999998887
Q ss_pred EEEecCC
Q 002164 565 ERIWESD 571 (958)
Q Consensus 565 ~~l~~~~ 571 (958)
.+.+...
T Consensus 286 ~~~~~~~ 292 (325)
T d1pgua1 286 VQKWTLD 292 (325)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 6554433
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.10 E-value=2.9e-10 Score=124.51 Aligned_cols=116 Identities=8% Similarity=-0.066 Sum_probs=78.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCC------cEEEEcCCC
Q 002164 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG------FAILGGPTT 721 (958)
Q Consensus 648 dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G------~~vl~~~~~ 721 (958)
||..||..-....+ ...|.||++||.|..... | ...+..|++.| |.|++ .
T Consensus 90 ~G~~iHf~h~~~~~------~~~~pLlLlHG~P~s~~~-----------w----~~vi~~La~~g~~~~~~f~VIa---P 145 (394)
T d1qo7a_ 90 EGLTIHFAALFSER------EDAVPIALLHGWPGSFVE-----------F----YPILQLFREEYTPETLPFHLVV---P 145 (394)
T ss_dssp TTEEEEEEEECCSC------TTCEEEEEECCSSCCGGG-----------G----HHHHHHHHHHCCTTTCCEEEEE---E
T ss_pred CCEEEEEEEEeccC------CCCCEEEEeccccccHHH-----------H----HHHHHhhccccCCcccceeeec---c
Confidence 89999987665432 125778889998743211 1 23455788887 99999 5
Q ss_pred CCCCCCCcccchh---h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 722 PIIGEGDEEANDR---F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 722 ~~~G~G~~~~~~~---~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+.+|+|.|..+.. + ......|+.. |.+. ...++..++|||+||.++..+++.+|+.+.+++.....
T Consensus 146 DLpG~G~S~~P~~~~~y~~~~~a~~~~~----l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 146 SLPGYTFSSGPPLDKDFGLMDNARVVDQ----LMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp CCTTSTTSCCCCSSSCCCHHHHHHHHHH----HHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred cccccCCCCCCCCCCccCHHHHHHHHHH----HHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 6678888865421 2 2333333333 3333 12257889999999999999999999988888776543
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=8e-10 Score=112.99 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=56.7
Q ss_pred HHHHHHHC--CcEEEEcCCCCCCCCCCcccchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002164 704 SVLLWLAR--GFAILGGPTTPIIGEGDEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (958)
Q Consensus 704 ~~~~la~~--G~~vl~~~~~~~~G~G~~~~~~~~-~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (958)
....|.+. ||.|++ .|.+|+|.+..+..+ .....+|+.+ +.++ .+ +++.++||||||.+|+.+|.++
T Consensus 21 ~~~~l~~~~~~~~v~~---~d~~G~g~S~~~~~~~~~~~~~~l~~----~l~~--l~-~~~~lvGhS~GG~ia~~~a~~~ 90 (268)
T d1pjaa_ 21 LLEYINETHPGTVVTV---LDLFDGRESLRPLWEQVQGFREAVVP----IMAK--AP-QGVHLICYSQGGLVCRALLSVM 90 (268)
T ss_dssp HHHHHHHHSTTCCEEE---CCSSCSGGGGSCHHHHHHHHHHHHHH----HHHH--CT-TCEEEEEETHHHHHHHHHHHHC
T ss_pred HHHHHHhhCCCeEEEE---eCCCCCCCCCCccccCHHHHHHHHHH----HHhc--cC-CeEEEEccccHHHHHHHHHHHC
Confidence 45566664 899999 677788888654322 2223333333 3333 23 6899999999999999999999
Q ss_pred CC-ceeEEEEeccC
Q 002164 781 PH-LFCCGIARSGA 793 (958)
Q Consensus 781 p~-~~~a~v~~~~~ 793 (958)
|+ +++.+|+.++.
T Consensus 91 p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 91 DDHNVDSFISLSSP 104 (268)
T ss_dssp TTCCEEEEEEESCC
T ss_pred CccccceEEEECCC
Confidence 98 69999988764
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.02 E-value=8.4e-10 Score=105.74 Aligned_cols=153 Identities=14% Similarity=-0.034 Sum_probs=95.4
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-- 780 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-- 780 (958)
.....|+++||.++.++ ..|++.+.... ....+++.+.++.+.++. ..+++.++||||||.++..++.+.
T Consensus 20 ~l~~~l~~~g~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~i~~~~~~~--~~~~v~lvGHSmGG~va~~~~~~~~~ 91 (179)
T d1ispa_ 20 GIKSYLVSQGWSRDKLY---AVDFWDKTGTN---YNNGPVLSRFVQKVLDET--GAKKVDIVAHSMGGANTLYYIKNLDG 91 (179)
T ss_dssp HHHHHHHHTTCCGGGEE---ECCCSCTTCCH---HHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHcCCeEEEEe---cCCcccccccc---chhhhhHHHHHHHHHHhc--CCceEEEEeecCcCHHHHHHHHHcCC
Confidence 45677899999887633 33444433222 223344555555555542 346899999999999999999876
Q ss_pred CCceeEEEEeccCCCCCCCCCCcccccchhhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHh
Q 002164 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (958)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (958)
|++++.+|++++........ ...........|++.++|..|..|+ +..+. +.
T Consensus 92 ~~~V~~~V~l~~p~~g~~~~--------------------~l~~~~~~~~~~~~~i~~~~D~~v~--~~~~~-----l~- 143 (179)
T d1ispa_ 92 GNKVANVVTLGGANRLTTGK--------------------ALPGTDPNQKILYTSIYSSADMIVM--NYLSR-----LD- 143 (179)
T ss_dssp GGTEEEEEEESCCGGGTCSB--------------------CCCCSCTTCCCEEEEEEETTCSSSC--HHHHC-----CB-
T ss_pred chhhCEEEEECCCCCCchhh--------------------hcCCcccccCceEEEEEecCCcccC--chhhc-----CC-
Confidence 57899999988753211000 0000112245799999999999998 65431 21
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 861 ~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
..+.+.+++.+|... ..+ ..+.+.+.+||+.
T Consensus 144 ---~~~~~~~~~~~H~~l-~~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 144 ---GARNVQIHGVGHIGL-LYS-SQVNSLIKEGLNG 174 (179)
T ss_dssp ---TSEEEEESSCCTGGG-GGC-HHHHHHHHHHHTT
T ss_pred ---CceEEEECCCCchhh-ccC-HHHHHHHHHHHhc
Confidence 135667899999743 222 3556667777653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.94 E-value=8.8e-07 Score=97.20 Aligned_cols=259 Identities=10% Similarity=0.041 Sum_probs=142.5
Q ss_pred cceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCc---cccccCCCCCceeEEEeccCceE--EEeccCC
Q 002164 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY---SFIVPCGRFPRQVGVWTTDGIFV--RELCDLP 385 (958)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~---~~~~~~~~~~~~i~l~d~~~~~~--~~l~~~~ 385 (958)
...|+++|+ +|+.....-. .....+.|++|++.|+|+....+. ....+....+..++++.+.+... ..+....
T Consensus 150 ~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~ 229 (430)
T d1qfma1 150 WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (430)
T ss_dssp CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred hheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccc
Confidence 356889999 8865432211 234678999999999999865331 11112233455788887764322 2222211
Q ss_pred ccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCC-----CceEEEee-ccccC
Q 002164 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-----GPEILHKL-DLRYG 459 (958)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-----~~~~l~~~-~~~~~ 459 (958)
.. + .....+..|+||+.+++.+.... .....+|++++...... ....+... .....
T Consensus 230 d~---~-------~~~~~~~~s~d~~~l~i~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (430)
T d1qfma1 230 DE---P-------KWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD 291 (430)
T ss_dssp TC---T-------TCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred cC---C-------ceEEeeeccCCcceeeEEeeccC--------CccEEEEEeeCCCcccccccccceeEeecccccceE
Confidence 00 0 12234667899998877543321 23446778775211111 11222211 11111
Q ss_pred ceeeecCCceEEEEEeccccceEEEEEcCCCCCCCc-EEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEE
Q 002164 460 GISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP-RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYI 538 (958)
Q Consensus 460 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 538 (958)
. ...+|..+++.++.+..+.+|..++++...... ..+.......+.. -.++..+.+|+.....
T Consensus 292 -~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~------~~~~~~~~~lvl~~~~-------- 355 (430)
T d1qfma1 292 -Y-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE------WVACVRSNFLVLCYLH-------- 355 (430)
T ss_dssp -E-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE------EEEEETTTEEEEEEEE--------
T ss_pred -E-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee------eEEEEECCEEEEEEEc--------
Confidence 1 233566777777777667889999887653221 2222111111110 1123334445444321
Q ss_pred EEccCCCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002164 539 LLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (958)
Q Consensus 539 ~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~ 618 (958)
...++|.++++++++...+...+.. ++.. .+...++..+++..++...|+.+|.+|+.+
T Consensus 356 ----------~~~~~l~v~~~~~~~~~~~~~~~~~----sv~~-------~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 356 ----------DVKNTLQLHDLATGALLKIFPLEVG----SVVG-------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (430)
T ss_dssp ----------TTEEEEEEEETTTCCEEEEECCCSS----EEEE-------EECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred ----------CCEeEEEEEECCCCcEEEecCCCCc----eEee-------ccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence 2345799999999988887654432 1111 123456678999999999999999999998
Q ss_pred CCe--eEeec
Q 002164 619 KKS--CQITD 626 (958)
Q Consensus 619 g~~--~~Lt~ 626 (958)
|+. +.+.+
T Consensus 415 ~~~~~~~~k~ 424 (430)
T d1qfma1 415 EELEPRVFRE 424 (430)
T ss_dssp SSCCCEEEEE
T ss_pred CCcceeeEec
Confidence 865 34443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.91 E-value=2.9e-07 Score=98.76 Aligned_cols=280 Identities=9% Similarity=-0.032 Sum_probs=134.9
Q ss_pred ceeEEEccCCCCCCceeeec--cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQ--GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt--~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
+|++..+..+. +....+. ..+.....+..++||||+.|+.+.. +....|.++.+++............
T Consensus 15 ~i~~~~fd~~~--~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (365)
T d1jofa_ 15 AIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--------KKWSSFAVKSPTEIVHEASHPIGGH 84 (365)
T ss_dssp EEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--------TEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CEEEEEEcCCC--CeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC--------CcEEEEEEeCCCCeEEEeeecCCCC
Confidence 57777764322 3322221 1233335677899999988776531 2456777776665443322111111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc
Q 002164 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 321 (958)
...+..++||+.+++........ .+.... ....+ ....++.++.
T Consensus 85 ----p~~v~~~~~~~~~~v~~a~~~~~-----------~v~~~~--------------~~~~~-------~~~~~~~~~~ 128 (365)
T d1jofa_ 85 ----PRANDADTNTRAIFLLAAKQPPY-----------AVYANP--------------FYKFA-------GYGNVFSVSE 128 (365)
T ss_dssp ----GGGGCTTSCCEEEEEEECSSTTC-----------CEEEEE--------------ESSSC-------CEEEEEEECT
T ss_pred ----cEEEEECCCCCEEEEEEecCCCC-----------EEEEeE--------------ccCCC-------CcceeEeeee
Confidence 34677889999877653221110 000000 00000 1122333332
Q ss_pred CCeeeec-----CCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC-ceEEEeccCCccccCcccc
Q 002164 322 DGTVKEI-----GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAF 394 (958)
Q Consensus 322 ~g~~~~l-----~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~~l~~~~~~~~~p~~~ 394 (958)
++..... .+. .....+.|||||++|++.... ...|++++.+. +...........
T Consensus 129 ~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g------------~d~v~~~~~~~~g~~~~~~~~~~~------- 189 (365)
T d1jofa_ 129 TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAP------- 189 (365)
T ss_dssp TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECS-------
T ss_pred cceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC------------CCEEEEEEccCCCceeeccceeec-------
Confidence 2221111 011 345678999999999887633 23788887653 222222110000
Q ss_pred cccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE---Eeec----------------
Q 002164 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---HKLD---------------- 455 (958)
Q Consensus 395 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---~~~~---------------- 455 (958)
....+++.+.|+|||+.+++. . ...+.|.+++. ++++...+ ....
T Consensus 190 -~~g~gPr~i~f~pdg~~~yv~-~-----------e~~~~V~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (365)
T d1jofa_ 190 -DPGDHPRWVAMHPTGNYLYAL-M-----------EAGNRICEYVI---DPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp -STTCCEEEEEECTTSSEEEEE-E-----------TTTTEEEEEEE---CTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred -CCCCceEEEEECCCCceEEEe-c-----------cCCCEEEEEEe---cCCCceEEEEeeeeccccccccccccccccc
Confidence 011467889999999977664 1 22456767665 22222111 1110
Q ss_pred -cccCceeeecCCceEEEEEeccc--cc--eEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEecc-CCceEEEEe
Q 002164 456 -LRYGGISWCDDSLALVYESWYKT--RR--TRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKI 528 (958)
Q Consensus 456 -~~~~~~~~spDg~~l~~~~~~~~--~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~ 528 (958)
.....+.++|||++|+.+...+. .. ...+.++..+.-.....+......... ...++++| ||++|+...
T Consensus 254 ~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~----p~~i~~~p~~G~~l~va~ 328 (365)
T d1jofa_ 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH----SNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT----CCCEEECTTCTTEEEEEC
T ss_pred cCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC----ccEEEecCCCCCEEEEEe
Confidence 01234789999999877643222 11 333444433320011111111111100 01177898 899887775
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.5e-06 Score=91.12 Aligned_cols=180 Identities=12% Similarity=-0.000 Sum_probs=91.8
Q ss_pred ceeEEEeccCceE-EEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCC
Q 002164 366 RQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ 444 (958)
Q Consensus 366 ~~i~l~d~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (958)
+.+.+|+...... ..+... ......+++||+.++.. +..+.|.+|++ .
T Consensus 157 ~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~s~-------------~~dg~i~~~d~---~ 205 (342)
T d2ovrb2 157 FMVKVWDPETETCLHTLQGH---------------TNRVYSLQFDGIHVVSG-------------SLDTSIRVWDV---E 205 (342)
T ss_dssp SCEEEEEGGGTEEEEEECCC---------------SSCEEEEEECSSEEEEE-------------ETTSCEEEEET---T
T ss_pred CeEEEeecccceeeEEEcCc---------------ccccccccCCCCEEEEE-------------eCCCeEEEeec---c
Confidence 4788999875443 222221 12345677888876652 44567889986 3
Q ss_pred CCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCce
Q 002164 445 GEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTY 523 (958)
Q Consensus 445 g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 523 (958)
.++ ...+......+. .++++++.|+..+..+ .|.+++.... +........... ......++++++.
T Consensus 206 ~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d~----~i~iwd~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~ 272 (342)
T d2ovrb2 206 TGNCIHTLTGHQSLTS--GMELKDNILVSGNADS----TVKIWDIKTG--QCLQTLQGPNKH-----QSAVTCLQFNKNF 272 (342)
T ss_dssp TCCEEEEECCCCSCEE--EEEEETTEEEEEETTS----CEEEEETTTC--CEEEEECSTTSC-----SSCEEEEEECSSE
T ss_pred cceeeeEeccccccee--EEecCCCEEEEEcCCC----EEEEEecccc--ccccccccccee-----eeceeecccCCCe
Confidence 333 233333333333 4455566776655433 2555555543 222222211111 1111345666777
Q ss_pred EEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceEEEe-cCCcccccceeEeecCCCccccccccCCEEEEEE
Q 002164 524 VIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW-ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSK 602 (958)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 602 (958)
++.... ...|.+||+.+|+..+-. ..........+. ..+|++|+..++.-.
T Consensus 273 ~~s~s~---------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~-------~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 273 VITSSD---------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVW-------RIRASNTKLVCAVGS 324 (342)
T ss_dssp EEEEET---------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEE-------EEEECSSEEEEEEEC
T ss_pred eEEEcC---------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEE-------EEEECCCCCEEEEEe
Confidence 666542 126999999988765432 211100001112 246888876554444
Q ss_pred ecCCCCceEEEEECC
Q 002164 603 ESKTENTQYYIQSWP 617 (958)
Q Consensus 603 ~s~~~p~~~~~~d~~ 617 (958)
...+....++++|.+
T Consensus 325 ~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 325 RNGTEETKLLVLDFD 339 (342)
T ss_dssp SSSSSCCEEEEEECC
T ss_pred CCCCCeeEEEEEeCC
Confidence 444445668888764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=8.7e-07 Score=93.52 Aligned_cols=297 Identities=9% Similarity=0.036 Sum_probs=152.4
Q ss_pred eecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccce
Q 002164 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (958)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~ 194 (958)
.+++||++||..+.+ +.|.||++.+ + ...+.+.++ ...+...
T Consensus 18 c~~~~~~~l~tgs~D---------------------------------g~i~vWd~~~-~--~~~~~l~~H--~~~V~~l 59 (355)
T d1nexb2 18 CLQFEDNYVITGADD---------------------------------KMIRVYDSIN-K--KFLLQLSGH--DGGVWAL 59 (355)
T ss_dssp EEEEETTEEEEEETT---------------------------------TEEEEEETTT-T--EEEEEEECC--SSCEEEE
T ss_pred EEEECCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEECC--CCCEEEE
Confidence 478899999887765 4799999854 2 234555543 3578999
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCC
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPL 274 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~ 274 (958)
+|+||+ .|+... ....|.+++...++........... .......++++++.++....+....
T Consensus 60 ~~s~~~-~l~s~s---------~D~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~------ 121 (355)
T d1nexb2 60 KYAHGG-ILVSGS---------TDRTVRVWDIKKGCCTHVFEGHNST--VRCLDIVEYKNIKYIVTGSRDNTLH------ 121 (355)
T ss_dssp EEETTT-EEEEEE---------TTCCEEEEETTTTEEEEEECCCSSC--EEEEEEEEETTEEEEEEEETTSEEE------
T ss_pred EEcCCC-EEEEEe---------ccccccccccccccccccccccccc--ccccccccccccceeeeecCCCcEE------
Confidence 999975 555543 2557888888877655443322211 1123556778988888763221100
Q ss_pred CCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeec--CCCccccccccCCCCcEEEEEeec
Q 002164 275 VPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEI--GPPAVYTSLDPSPDEKYILISSIH 352 (958)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l--~~~~~~~~~~~SpDGk~l~~~~~~ 352 (958)
++........... .. .....+...........+ ..........+.++|+.++....
T Consensus 122 ------iw~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 179 (355)
T d1nexb2 122 ------VWKLPKESSVPDH--------GE-------EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY- 179 (355)
T ss_dssp ------EEECCC--------------------------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET-
T ss_pred ------EEEccCCceeccc--------cc-------cceeccceeccccccceeeeeeeccccccccccccceeeeecc-
Confidence 1100000000000 00 000000000000000000 00001112245667777776653
Q ss_pred CCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccC
Q 002164 353 RPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR 432 (958)
Q Consensus 353 ~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 432 (958)
++.+.+||+..+......... ........|+|+++.++.. ...
T Consensus 180 ------------d~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-------------~~d 222 (355)
T d1nexb2 180 ------------DNTLIVWDVAQMKCLYILSGH------------TDRIYSTIYDHERKRCISA-------------SMD 222 (355)
T ss_dssp ------------TSCEEEEETTTTEEEEEECCC------------SSCEEEEEEETTTTEEEEE-------------ETT
T ss_pred ------------cceeeeeecccccceeeeecc------------ccccccccccccceeeecc-------------ccc
Confidence 347889999865543322111 1233568899999987763 345
Q ss_pred CeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCC
Q 002164 433 DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (958)
Q Consensus 433 ~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (958)
+.+.+++. .++.....+..+...+..+.|+ ++.|+....++ .|.++|+... ....... ...+..
T Consensus 223 ~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~--~~~~~~---- 286 (355)
T d1nexb2 223 TTIRIWDL--ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG----SIRGWDANDY--SRKFSYH--HTNLSA---- 286 (355)
T ss_dssp SCEEEEET--TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTS----EEEEEETTTC--CEEEEEE--CTTCCC----
T ss_pred ceEEeeec--cccccccccccccccccccccc--cceeeeeeccc----cccccccccc--ceecccc--cCCceE----
Confidence 56888885 2333334444445556666765 45666654332 3555566653 2222221 111111
Q ss_pred CceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
...++++++.|+... + ..|++||+++|+..
T Consensus 287 -~~~~~~~~~~l~~g~--------------d--------~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 287 -ITTFYVSDNILVSGS--------------E--------NQFNIYNLRSGKLV 316 (355)
T ss_dssp -CCEEEECSSEEEEEE--------------T--------TEEEEEETTTCCBC
T ss_pred -EEEEcCCCCEEEEEe--------------C--------CEEEEEECCCCCEE
Confidence 134677887665443 1 15999999988754
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=1.4e-09 Score=108.88 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=99.0
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
..+.||++||..... ..| ...+..| .+|.|+. .+..|.+. ..+++.+.
T Consensus 16 ~~~~l~~lhg~~g~~-----------~~~----~~la~~L--~~~~v~~---~~~~g~~~----------~a~~~~~~-- 63 (230)
T d1jmkc_ 16 QEQIIFAFPPVLGYG-----------LMY----QNLSSRL--PSYKLCA---FDFIEEED----------RLDRYADL-- 63 (230)
T ss_dssp CSEEEEEECCTTCCG-----------GGG----HHHHHHC--TTEEEEE---ECCCCSTT----------HHHHHHHH--
T ss_pred CCCeEEEEcCCCCCH-----------HHH----HHHHHHC--CCCEEec---cCcCCHHH----------HHHHHHHH--
Confidence 368999999964211 112 2334444 4798988 44455543 22333333
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---ceeEEEEeccCCCCCCCCC---Cccc----------cc--chh
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH---LFCCGIARSGAYNRTLTPF---GFQN----------ED--RTL 810 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~~~~~~~~~~~---~~~~----------~~--~~~ 810 (958)
+.+. ....++.|+||||||.+|+.+|.+.|+ .+..++...+......... .... .. ...
T Consensus 64 -i~~~--~~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (230)
T d1jmkc_ 64 -IQKL--QPEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNS 140 (230)
T ss_dssp -HHHH--CCSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGS
T ss_pred -HHHh--CCCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 3333 223579999999999999999987654 3444444443211100000 0000 00 000
Q ss_pred hh-------cH-HHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCccCC-Ccc
Q 002164 811 WE-------AT-STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA-ARE 881 (958)
Q Consensus 811 ~~-------~~-~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~-~~~ 881 (958)
+. .. ..+..........++++|+++++|++|..++ .. ...+.+. ....++++.+++ +|... ..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~--~~-~~~w~~~---~~~~~~~~~i~g-~H~~ml~~~ 213 (230)
T d1jmkc_ 141 EAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--EW-LASWEEA---TTGAYRMKRGFG-THAEMLQGE 213 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--TT-EECSGGG---BSSCEEEEECSS-CGGGTTSHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccc--hh-HHHHHHh---ccCCcEEEEEcC-CChhhcCCc
Confidence 00 00 1111112223456788999999999999886 33 2222222 223588889996 89843 333
Q ss_pred cHHHHHHHHHHHHHH
Q 002164 882 SIMHVLWETDRWLQK 896 (958)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (958)
...++.+.|.+||++
T Consensus 214 ~~~~va~~I~~~L~~ 228 (230)
T d1jmkc_ 214 TLDRNAGILLEFLNT 228 (230)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhh
Confidence 445566666666654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.82 E-value=1.7e-07 Score=100.56 Aligned_cols=137 Identities=8% Similarity=-0.055 Sum_probs=71.0
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceE---EEeccCCccc-cCc---ccccccccCccee
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV---RELCDLPLAE-DIP---IAFNSVRKGMRSI 404 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~---~~l~~~~~~~-~~p---~~~~~~~~~~~~~ 404 (958)
.....+.|+|||++++++... .++|.+|+.+++.. ..+...+... ..+ ............+
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~------------~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 260 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred CceEEEEECCCCceEEEeccC------------CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence 556788999999988877633 45888998875422 2221111110 000 0000111233568
Q ss_pred eeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEE-E--e---eccccCceeeec-CCceEEEEEecc
Q 002164 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-H--K---LDLRYGGISWCD-DSLALVYESWYK 477 (958)
Q Consensus 405 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~--~---~~~~~~~~~~sp-Dg~~l~~~~~~~ 477 (958)
.++|||+.++......+. .....|..++++ +.+..... . . .....+.++++| ||++|+.+. .+
T Consensus 261 ~~spdG~~lyvsnr~~~~-------~~~~~i~~~~~~--~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~-~~ 330 (365)
T d1jofa_ 261 ALTFSGKYMFASSRANKF-------ELQGYIAGFKLR--DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-DQ 330 (365)
T ss_dssp EECTTSSEEEEEEEESST-------TSCCEEEEEEEC--TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-SS
T ss_pred EECCCCCEEEEEcccCCC-------ccceEEEEEEec--CCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe-CC
Confidence 999999998774322111 112234444431 22222222 1 1 112345688998 788877764 33
Q ss_pred ccceEEEEEcCCC
Q 002164 478 TRRTRTWVISPGS 490 (958)
Q Consensus 478 ~~~~~l~~~~~~~ 490 (958)
.+...+|.++.++
T Consensus 331 s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 331 EGWLEIYRWKDEF 343 (365)
T ss_dssp SCEEEEEEEETTE
T ss_pred CCeEEEEEEeCCc
Confidence 3446677666443
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.80 E-value=7.8e-09 Score=106.93 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=96.9
Q ss_pred CCcEEEEcCCCCCCCCCCcccch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C
Q 002164 711 RGFAILGGPTTPIIGEGDEEAND-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P 781 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~~~-----~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p 781 (958)
.++.|+. .+..|+|.+.... ........++.++| .+. ....++.|+||||||.+|+.+|.+. +
T Consensus 87 ~~~~V~a---l~~pG~~~~~~~~~~~~~~s~~~~a~~~~~~i---~~~--~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g 158 (283)
T d2h7xa1 87 EERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAI---LRA--AGDAPVVLLGHSGGALLAHELAFRLERAHG 158 (283)
T ss_dssp TTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHH---HHH--HTTSCEEEEEETHHHHHHHHHHHHHHHHHS
T ss_pred CCceEEE---EeCCCCCCCCCCccccccCCHHHHHHHHHHHH---HHh--cCCCceEEEEeccchHHHHHHHHhhHHHcC
Confidence 4688888 4555666543221 22444444444443 332 1224799999999999999998763 4
Q ss_pred CceeEEEEeccCCCCCCCCCCcc-------------cccchhh-hcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCC
Q 002164 782 HLFCCGIARSGAYNRTLTPFGFQ-------------NEDRTLW-EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (958)
Q Consensus 782 ~~~~a~v~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (958)
..+.++|++.+............ ......+ .....+.+.-.......+++|+|+++|++|..++
T Consensus 159 ~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~-- 236 (283)
T d2h7xa1 159 APPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDW-- 236 (283)
T ss_dssp CCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCC--
T ss_pred CCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCC--
Confidence 56888888775422111000000 0000000 0000111111112345688999999999999987
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002164 848 TMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (958)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (958)
......+.+. ....++++.+|| +|.....+....+.+.|.+||+.
T Consensus 237 ~~~~~~w~~~---~~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 237 QEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp CGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 6654443222 233468888998 78643345667778889999875
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.80 E-value=7.6e-08 Score=100.94 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCcEEEEcCCCCCCCCCCccc----c-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHH
Q 002164 711 RGFAILGGPTTPIIGEGDEEA----N-------DRFVEQLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLA 778 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~----~-------~~~~~~~~~D~~~av~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~ 778 (958)
.-|.|++++.+|. |+|-+.. + ..+-...+.|+.++-..|+++--| +|+ +|+|.||||+.|+..+.
T Consensus 77 ~kyfVI~~n~lG~-~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~ 153 (357)
T d2b61a1 77 DRYFFISSNVLGG-CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAI 153 (357)
T ss_dssp TTCEEEEECCTTC-SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHH
T ss_pred CceEEEEecccCC-ccccCCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHH
Confidence 4588999777653 2222111 0 111122377877877777776334 476 88899999999999999
Q ss_pred hCCCceeEEEEeccCCC-------------------CCCCCCCcccc---------------------------------
Q 002164 779 HAPHLFCCGIARSGAYN-------------------RTLTPFGFQNE--------------------------------- 806 (958)
Q Consensus 779 ~~p~~~~a~v~~~~~~~-------------------~~~~~~~~~~~--------------------------------- 806 (958)
++|++++.+|++++..- .....-.+...
T Consensus 154 ~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~ 233 (357)
T d2b61a1 154 DYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATK 233 (357)
T ss_dssp HSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBC
T ss_pred hhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccc
Confidence 99999999998886321 00000000000
Q ss_pred -cchhhh--------------------cH-------HHHHhcCc-------ccccCCCCCCEEEEeeCCCCCCCCChHHH
Q 002164 807 -DRTLWE--------------------AT-------STYVEMSP-------FMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (958)
Q Consensus 807 -~~~~~~--------------------~~-------~~~~~~sp-------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~ 851 (958)
....|. ++ ..+..+++ ...+++|++|+|++..+.|..+| +++.
T Consensus 234 ~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFp--p~~~ 311 (357)
T d2b61a1 234 SDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFK--PIDL 311 (357)
T ss_dssp TTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSC--HHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCCEEEEEeCCccccC--HHHH
Confidence 000000 00 11111122 12367899999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC-CccCCCcccHHHHHHHHHHHHH
Q 002164 852 DRFFNALKGHGALCRLVILPFE-SHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~p~~-~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+++.+.|+..++.++++.++.. ||.-. ..+...+.+.|.+||+
T Consensus 312 ~~~a~~l~~~~~~v~~~~I~S~~GHdaf-L~e~~~~~~~I~~fL~ 355 (357)
T d2b61a1 312 YKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLA 355 (357)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCcccc-CcCHHHHHHHHHHHHc
Confidence 9999999999999999999964 77521 1223455566677765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=1.2e-06 Score=92.30 Aligned_cols=296 Identities=11% Similarity=0.023 Sum_probs=153.0
Q ss_pred eeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEE
Q 002164 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (958)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (958)
..|.++. ..+.. .+++||++|+... ....|.+||+.+++........... +..++|+|++. |+
T Consensus 6 ~tL~GH~--~~vit-c~~~~~~~l~tgs---------~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~l~~s~~~~-l~ 68 (355)
T d1nexb2 6 TTLRGHM--TSVIT-CLQFEDNYVITGA---------DDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGGI-LV 68 (355)
T ss_dssp EEEECCS--SSCEE-EEEEETTEEEEEE---------TTTEEEEEETTTTEEEEEEECCSSC----EEEEEEETTTE-EE
T ss_pred EEECCcC--CCcEE-EEEECCCEEEEEe---------CCCeEEEEECCCCcEEEEEECCCCC----EEEEEEcCCCE-EE
Confidence 3455543 32322 4677899887744 2568999999988765544333332 77899999874 54
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeec-CCC---ccc
Q 002164 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPP---AVY 334 (958)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l-~~~---~~~ 334 (958)
... ....|.+++. .+..... ... ...
T Consensus 69 s~s-------------------------------------------------~D~~i~iw~~~~~~~~~~~~~~~~~~~~ 99 (355)
T d1nexb2 69 SGS-------------------------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRC 99 (355)
T ss_dssp EEE-------------------------------------------------TTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEe-------------------------------------------------cccccccccccccccccccccccccccc
Confidence 431 1234556666 4432222 111 233
Q ss_pred cccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc----ccCcc----ccccc-ccCcceee
Q 002164 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA----EDIPI----AFNSV-RKGMRSIN 405 (958)
Q Consensus 335 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~----~~~p~----~~~~~-~~~~~~~~ 405 (958)
....++++++.++..+.+ +.+.+|++.+............ ...+. ..... .....-..
T Consensus 100 ~~~~~~~~~~~~~~~~~d-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (355)
T d1nexb2 100 LDIVEYKNIKYIVTGSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166 (355)
T ss_dssp EEEEEETTEEEEEEEETT-------------SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred cccccccccceeeeecCC-------------CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence 456678999999888743 4899999875432211110000 00000 00000 00011234
Q ss_pred eecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCC-ceEEEeeccccCceeeecCCceEEEEEeccccceEEE
Q 002164 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (958)
Q Consensus 406 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (958)
+.++|+.++.. .....+.++++ ..++ ...............|+|+++.++.....+. +.
T Consensus 167 ~~~~~~~~~~~-------------~~d~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----i~ 226 (355)
T d1nexb2 167 VSGHGNIVVSG-------------SYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT----IR 226 (355)
T ss_dssp EEEETTEEEEE-------------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC----EE
T ss_pred cccccceeeee-------------cccceeeeeec---ccccceeeeeccccccccccccccceeeecccccce----EE
Confidence 55566555442 33456788885 3322 2222333445567889999999887764433 55
Q ss_pred EEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCce
Q 002164 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (958)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~ 564 (958)
+++..++ ............+.. ++| ++++|+.... ...|++||++++..
T Consensus 227 i~d~~~~--~~~~~~~~h~~~v~~------~~~--~~~~l~~~~~---------------------dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 227 IWDLENG--ELMYTLQGHTALVGL------LRL--SDKFLVSAAA---------------------DGSIRGWDANDYSR 275 (355)
T ss_dssp EEETTTC--CEEEEECCCSSCCCE------EEE--CSSEEEEECT---------------------TSEEEEEETTTCCE
T ss_pred eeecccc--ccccccccccccccc------ccc--ccceeeeeec---------------------ccccccccccccce
Confidence 5566553 223333332222222 444 4566665542 12599999987764
Q ss_pred EEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002164 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (958)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~ 622 (958)
......... .. -..+++++. +++... ...++++|+.+|+..
T Consensus 276 ~~~~~~~~~------~~------~~~~~~~~~-~l~~g~----d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 276 KFSYHHTNL------SA------ITTFYVSDN-ILVSGS----ENQFNIYNLRSGKLV 316 (355)
T ss_dssp EEEEECTTC------CC------CCEEEECSS-EEEEEE----TTEEEEEETTTCCBC
T ss_pred ecccccCCc------eE------EEEEcCCCC-EEEEEe----CCEEEEEECCCCCEE
Confidence 433222211 11 123555665 444433 246999999888643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.76 E-value=4e-08 Score=105.82 Aligned_cols=207 Identities=11% Similarity=-0.023 Sum_probs=108.5
Q ss_pred eeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (958)
...+|||++|+... ..+..|.++|+++++..++...+... ....++++|||+.+++.........
T Consensus 77 t~gtpDGr~lfV~d--------~~~~rVavIDl~t~k~~~ii~iP~g~---gphgi~~spdg~t~YV~~~~~~~v~---- 141 (441)
T d1qnia2 77 TDGRYDGKYLFIND--------KANTRVARIRLDIMKTDKITHIPNVQ---AIHGLRLQKVPKTNYVFCNAEFVIP---- 141 (441)
T ss_dssp ETTEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEEECTTCC---CEEEEEECCSSBCCEEEEEECSCEE----
T ss_pred ecccCCCCEEEEEc--------CCCCEEEEEECCCCcEeeEEecCCCC---CccceEEeccCCEEEEEeccCCccc----
Confidence 33579999875542 34778999999999887765544321 1557899999997766522111100
Q ss_pred CCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCCccccccccCCCCcEEEEEee
Q 002164 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDGk~l~~~~~ 351 (958)
..+++... ..+. ....+..+|. +.+ ..++.-++....+.++|||++++++..
T Consensus 142 --------~~~dg~~~------------~~~~------~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 142 --------QPNDGTDF------------SLDN------SYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp --------SSCSSSCC------------CGGG------EEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred --------ccCccccc------------cccc------ccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence 00000000 0000 1223344555 432 233333356678899999999998874
Q ss_pred cCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVT 430 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~ 430 (958)
... .+..++..+. ....+... .......++|||+.+++ .
T Consensus 196 nse------------~~~~id~~t~~~~d~i~v~--------------n~p~~~~~~~dGk~~~v--------------~ 235 (441)
T d1qnia2 196 NSE------------RAVDLAGTMRNDRDWVVVF--------------NVERIAAAVKAGNFKTI--------------G 235 (441)
T ss_dssp CTT------------CCSSHHHHTCSSBCEEEEE--------------EHHHHHHHHHTTCCBCC--------------T
T ss_pred CCC------------ceEEEeccCcceEEEEEeC--------------CccceEEEecCCCEEEe--------------C
Confidence 322 1111122111 11111100 12245668899997654 2
Q ss_pred cCCeEEEEeCCCCCCC-CceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcC
Q 002164 431 PRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (958)
Q Consensus 431 ~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 488 (958)
..+.+.+... ... ....+..+ ....++..||||++++.+...++ .+-++|.
T Consensus 236 ~~~v~vvd~~---~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~---tvsv~d~ 287 (441)
T d1qnia2 236 DSKVPVVDGR---GESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSP---TVSVIAI 287 (441)
T ss_dssp TCCCCEEECS---SSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSS---BEEEEEG
T ss_pred CCCcEEEEcc---cCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCC---cEEEEEe
Confidence 2333333332 222 23344333 33467899999999887744333 3555554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.9e-07 Score=98.12 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=65.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCC
Q 002164 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (958)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~ 189 (958)
.+..++|||||++||..+.+ +.|.||++.... .....+....+..
T Consensus 13 ~I~~l~fsp~~~~L~s~s~D---------------------------------g~v~iwd~~~~~--~~~~~~~~~~h~~ 57 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWD---------------------------------GSLTVYKFDIQA--KNVDLLQSLRYKH 57 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT---------------------------------SEEEEEEEETTT--TEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCEEEEEECC---------------------------------CeEEEEEccCCC--cceEEEEecCCCC
Confidence 47789999999999998875 578999986522 1111121112335
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+...+|+|++..++++.. ....|++++...+............. .....+.+++..++..
T Consensus 58 ~V~~v~f~~~~~~~l~sg~--------~d~~v~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 118 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGT--------VQGEILKVDLIGSPSFQALTNNEANL---GICRICKYGDDKLIAA 118 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE--------TTSCEEEECSSSSSSEEECBSCCCCS---CEEEEEEETTTEEEEE
T ss_pred CEEEEEEeCCCCCEEEEcc--------cccceeeeeccccccccccccccccc---cccccccccccccccc
Confidence 6889999998776666543 24578888887765544433222210 2234455666666544
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.70 E-value=3.3e-07 Score=96.19 Aligned_cols=180 Identities=13% Similarity=0.033 Sum_probs=112.4
Q ss_pred CCcEEEEcCCCCCCCCCCccc----c---hhh---HH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 711 RGFAILGGPTTPIIGEGDEEA----N---DRF---VE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~----~---~~~---~~-~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.-|.|++++.++. |+|-+.. + ..+ ++ ..+.|+.++-..|.++--|. +--+|+|.||||+.|+..|.+
T Consensus 84 ~~yfVI~~n~lG~-~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~-~l~~viG~SmGGmqAl~wA~~ 161 (362)
T d2pl5a1 84 NQYFIICSNVIGG-CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIE-KLFCVAGGSMGGMQALEWSIA 161 (362)
T ss_dssp TTCEEEEECCTTC-SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCS-SEEEEEEETHHHHHHHHHHHH
T ss_pred cccEEEeeccccC-cccccCccccccccccccCcCCccchhHHHHHHHHHHHHHhCcC-eeEEEeehhHHHHHHHHHHHh
Confidence 4588888777653 3332211 0 011 11 23777777777777764453 234588999999999999999
Q ss_pred CCCceeEEEEeccCCC-------------------CCCCCCCccccc--------c------------------------
Q 002164 780 APHLFCCGIARSGAYN-------------------RTLTPFGFQNED--------R------------------------ 808 (958)
Q Consensus 780 ~p~~~~a~v~~~~~~~-------------------~~~~~~~~~~~~--------~------------------------ 808 (958)
+|+.++.+|++++... .....-.|.... +
T Consensus 162 yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~ 241 (362)
T d2pl5a1 162 YPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRG 241 (362)
T ss_dssp STTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSS
T ss_pred CchHhhhhcccccccccCHHHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccc
Confidence 9999999999886321 000000000000 0
Q ss_pred ----hhhh----------------cH-------HHHHhcCcc------cccCCCCCCEEEEeeCCCCCCCCChHHHHHHH
Q 002164 809 ----TLWE----------------AT-------STYVEMSPF------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (958)
Q Consensus 809 ----~~~~----------------~~-------~~~~~~sp~------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (958)
..+. ++ ..+...++- ..+++|++|+|+|..+.|.++| +++.+++.
T Consensus 242 ~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFp--p~~~~~~a 319 (362)
T d2pl5a1 242 NILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP--PAQSREIV 319 (362)
T ss_dssp CTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--HHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcC--HHHHHHHH
Confidence 0000 00 111111211 2367899999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHH
Q 002164 856 NALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 856 ~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
+.|+..+++++++.++ ..||.-. -.+...+.+.|.+||+
T Consensus 320 ~~l~~a~~~v~~~eI~S~~GHdaF-L~e~~~~~~~I~~FL~ 359 (362)
T d2pl5a1 320 KSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGFLE 359 (362)
T ss_dssp HHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEeCCCCCcchh-ccCHHHHHHHHHHHHc
Confidence 9999999999999888 4678521 1223455666777764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.68 E-value=3e-06 Score=92.78 Aligned_cols=283 Identities=11% Similarity=0.052 Sum_probs=144.3
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
....+||||+++||+.+.. +++...|+++|+++|+....+- +... ...++|++|++.|+|+..........
T Consensus 128 ~~~~~Spd~~~la~s~d~~----G~e~~~l~v~Dl~tg~~~~~~i-~~~~----~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSAS----GSDWVTIKFMKVDGAKELPDVL-ERVK----FSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEEECTTSSEEEEEEEET----TCSCEEEEEEETTTTEEEEEEE-EEEC----SCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred cceEecCCCCEEEEEeccc----cCchheeEEeccCcceeccccc-cccc----ccceEEcCCCCEEEEEEeccccCccc
Confidence 4467899999999988655 7788999999999998654321 1111 34789999999999984332211000
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CC--eeeecCCC----ccccccccCCCCc
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP----AVYTSLDPSPDEK 344 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g--~~~~l~~~----~~~~~~~~SpDGk 344 (958)
.. ..+ .. ...++|+..+ ++ +...+... ..+.....|+||+
T Consensus 199 ~~---------~~~---------------~~---------~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~ 245 (430)
T d1qfma1 199 GT---------ETS---------------TN---------LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245 (430)
T ss_dssp SS---------CCC---------------CC---------CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred cc---------ccc---------------cC---------CcceEEEEECCCCccccccccccccCCceEEeeeccCCcc
Confidence 00 000 00 2235777776 44 22333332 2234566899999
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++++....... ....+++.++...........+. .+. +... .....+ ...+|..+++.++..
T Consensus 246 ~l~i~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~---~~~-~~~~-~~~~~~-~~~~~~~~~~~Tn~~---- 307 (430)
T d1qfma1 246 YVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKW---VKL-IDNF-EGEYDY-VTNEGTVFTFKTNRH---- 307 (430)
T ss_dssp EEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCC---EEE-ECSS-SSCEEE-EEEETTEEEEEECTT----
T ss_pred eeeEEeeccCC--------ccEEEEEeeCCCcccccccccce---eEe-eccc-ccceEE-EecCCceeecccCcc----
Confidence 99877644221 11246666654221100000000 000 0000 000111 233555555544321
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEe-eccccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 503 (958)
..+..|..++++..+....+.+.. .+..+..-.++-.+..|++....+. ..+|++++++++ ....+.....
T Consensus 308 -----a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~-~~~l~v~~~~~~--~~~~~~~~~~ 379 (430)
T d1qfma1 308 -----SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV-KNTLQLHDLATG--ALLKIFPLEV 379 (430)
T ss_dssp -----CTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT-EEEEEEEETTTC--CEEEEECCCS
T ss_pred -----cccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC-EeEEEEEECCCC--cEEEecCCCC
Confidence 235578778762211122244432 3333333344555667776655443 378999998885 3333333222
Q ss_pred ccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCCCCCCCCeEEEEECCCCceE
Q 002164 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (958)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dl~~g~~~ 565 (958)
..+.+ ++..++...+.+.. ++. -..+.+|.+|+++|+.+
T Consensus 380 ~sv~~------~~~~~~~~~~~~~~--------------ss~---~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 380 GSVVG------YSGQKKDTEIFYQF--------------TSF---LSPGIIYHCDLTKEELE 418 (430)
T ss_dssp SEEEE------EECCTTCSEEEEEE--------------ECS---SCCCEEEEEETTSSSCC
T ss_pred ceEee------ccCCCCCCEEEEEE--------------cCC---CCCCeEEEEECCCCCcc
Confidence 22211 22334444444443 221 12356999999998653
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.65 E-value=1.4e-07 Score=97.17 Aligned_cols=83 Identities=13% Similarity=-0.026 Sum_probs=63.3
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP- 781 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p- 781 (958)
.+...|+++||.|+.+++ +|+|.+. .....+++.++|+++.+.-. .+||.|+||||||.++.+++.+.|
T Consensus 51 ~~~~~L~~~Gy~v~~~d~---~g~g~~d-----~~~sae~la~~i~~v~~~~g--~~kV~lVGhS~GG~~a~~~l~~~p~ 120 (317)
T d1tcaa_ 51 NWIPLSTQLGYTPCWISP---PPFMLND-----TQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPS 120 (317)
T ss_dssp THHHHHHTTTCEEEEECC---TTTTCSC-----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCeEEEecC---CCCCCCc-----hHhHHHHHHHHHHHHHHhcc--CCceEEEEeCchHHHHHHHHHHCCC
Confidence 456788999999999444 4555432 24455677888888887632 358999999999999999999887
Q ss_pred --CceeEEEEeccCCC
Q 002164 782 --HLFCCGIARSGAYN 795 (958)
Q Consensus 782 --~~~~a~v~~~~~~~ 795 (958)
++++.+|.+++.+.
T Consensus 121 ~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 121 IRSKVDRLMAFAPDYK 136 (317)
T ss_dssp GTTTEEEEEEESCCTT
T ss_pred cchheeEEEEeCCCCC
Confidence 46899999988654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=2.6e-06 Score=88.52 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=130.6
Q ss_pred ceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeE
Q 002164 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (958)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (958)
+.+.++.++.+..+..++++|||+ |+++. .....||+++.++. ...+...+.. ...++|+|||+.
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~--------~~~~~I~~i~p~g~-~~~~~~~~~~-----~~gla~~~dG~l 81 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTN--------HEVGEIVSITPDGN-QQIHATVEGK-----VSGLAFTSNGDL 81 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEE--------TTTTEEEEECTTCC-EEEEEECSSE-----EEEEEECTTSCE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEe--------CCCCEEEEEeCCCC-EEEEEcCCCC-----cceEEEcCCCCe
Confidence 344555566555677889999997 55543 23568999997764 4444443432 568999999986
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc---CCeeeecCC---C
Q 002164 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGP---P 331 (958)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~l~~---~ 331 (958)
++... ....++.++. .+....+.. .
T Consensus 82 ~v~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (302)
T d2p4oa1 82 VATGW-------------------------------------------------NADSIPVVSLVKSDGTVETLLTLPDA 112 (302)
T ss_dssp EEEEE-------------------------------------------------CTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred EEEec-------------------------------------------------CCceEEEEEecccccceeeccccCCc
Confidence 55431 1122444443 344444332 1
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.....+.+.+||+.++..+ . ...++.++.+++........+... +..... .....-..+.|+.
T Consensus 113 ~~~n~i~~~~~g~~~v~~~-~------------~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 113 IFLNGITPLSDTQYLTADS-Y------------RGAIWLIDVVQPSGSIWLEHPMLA--RSNSES--VFPAANGLKRFGN 175 (302)
T ss_dssp SCEEEEEESSSSEEEEEET-T------------TTEEEEEETTTTEEEEEEECGGGS--CSSTTC--CSCSEEEEEEETT
T ss_pred cccceeEEccCCCEEeecc-c------------cccceeeeccCCcceeEecCCccc--eeeccC--cccccccccccCC
Confidence 4456778999996544332 1 237888888876544432221110 000000 0111122344566
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCc--eEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 489 (958)
.+++. + .....|+.++.+ ..+.. ............+++++||+ |+++...+ .+|++++++
T Consensus 176 ~l~~~-~-----------~~~~~i~~~~~~--~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~---~~V~~i~p~ 237 (302)
T d2p4oa1 176 FLYVS-N-----------TEKMLLLRIPVD--STDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIY---NSVVRIAPD 237 (302)
T ss_dssp EEEEE-E-----------TTTTEEEEEEBC--TTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTT---CCEEEECTT
T ss_pred ceeee-c-----------CCCCeEEecccc--ccccccccccccCCCCCcceEECCCCC-EEEEEcCC---CcEEEECCC
Confidence 66553 1 345678888862 22221 12222333456799999997 55554443 359999988
Q ss_pred CCCCCcEEEeccCCccccCCCCCCceEe---ccCCceEEEEe
Q 002164 490 SKDVAPRILFDRSSEDVYSDPGSPMMRR---TSTGTYVIAKI 528 (958)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---spdG~~l~~~~ 528 (958)
+. ...+...... +. +.-.++| ++|++.|+...
T Consensus 238 G~---~~~~~~~~~~-~~---~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 238 RS---TTIIAQAEQG-VI---GSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp CC---EEEEECGGGT-CT---TEEEEEECCSTTTTTEEEEEE
T ss_pred CC---EEEEEecCCC-CC---CceEEEEcCCCCCCCEEEEEC
Confidence 73 2222221111 10 0001567 67888777654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=4.1e-06 Score=87.62 Aligned_cols=241 Identities=12% Similarity=-0.001 Sum_probs=131.4
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|+|.+||+ |+|+.. ....|++++.++++........... ...+++++||++++.......
T Consensus 42 lEG~~~D~~G~-Ly~~D~--------~~g~I~ri~p~g~~~~~~~~~~~~~----p~gla~~~dG~l~va~~~~~~---- 104 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLDV--------FEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDFK---- 104 (319)
T ss_dssp EEEEEECTTSC-EEEEET--------TTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTTSS----
T ss_pred cEeCEECCCCC-EEEEEC--------CCCEEEEEECCCCeEEEEEeCCCCC----eeEEEECCCCCEEEEecCCCc----
Confidence 35699999996 777531 3568999999987655443222211 457889999987664411000
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC----ccccccccCCCCcE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKY 345 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~----~~~~~~~~SpDGk~ 345 (958)
....++.++. ++....+... .......++|||+
T Consensus 105 -----------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~- 142 (319)
T d2dg1a1 105 -----------------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG- 142 (319)
T ss_dssp -----------------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-
T ss_pred -----------------------------------------cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-
Confidence 1234666666 4444433322 3345678999997
Q ss_pred EEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
|+++..... .....+.++.++.+++..+.+...- .....++|+|||+.|++. +
T Consensus 143 l~vtd~~~~------~~~~~g~v~~~~~dg~~~~~~~~~~-------------~~pnGia~s~dg~~lyva-d------- 195 (319)
T d2dg1a1 143 FYFTDFRGY------STNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKVLWVT-E------- 195 (319)
T ss_dssp EEEEECCCB------TTBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSEEEEE-E-------
T ss_pred eeecccccc------cccCcceeEEEecccceeEEEeecc-------------ceeeeeeeccccceEEEe-c-------
Confidence 555542211 0112346788888877665543310 223579999999988773 2
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEe----ec---cccCceeeecCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHK----LD---LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~----~~---~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 498 (958)
...+.|++++++ .++........ .. ....++++..+|+ |+.+.+.. .+|+++++++. ....
T Consensus 196 ----~~~~~I~~~d~~-~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~---g~V~~~~p~G~---~l~~ 263 (319)
T d2dg1a1 196 ----TTANRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQ---GRVLVFNKRGY---PIGQ 263 (319)
T ss_dssp ----GGGTEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETT---TEEEEECTTSC---EEEE
T ss_pred ----ccCCceEEEEEc-CCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCC---CEEEEECCCCc---EEEE
Confidence 335578888862 23333222211 11 1123477888886 54444433 46999998762 2222
Q ss_pred eccCCccccCCCCCCceEeccCCceEEEEee
Q 002164 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (958)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (958)
...+....-.......+.|.+++..++....
T Consensus 264 i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 264 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 2222111000001112567787776665543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.56 E-value=1.2e-07 Score=102.01 Aligned_cols=264 Identities=14% Similarity=0.019 Sum_probs=125.7
Q ss_pred ceeEEEccCCCCCCceeeeccCCCCCcccceeecCCCCeEEEEEeecc----------ccCCCCCceEEEEEcCCCceee
Q 002164 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA----------EDSSSSKLRVWVADVDTGKARP 233 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~ 233 (958)
.|.++++.+ .+..++...+.+......++||||++++....... .........+-.+|.++.+...
T Consensus 95 rVavIDl~t----~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 95 RVARIRLDI----MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp EEEEEETTT----TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred EEEEEECCC----CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 678888855 44444444555556778899999997765443210 0001112234557777765432
Q ss_pred ccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcc--cccchhhhhccCchhhhHHHHh
Q 002164 234 LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI--IQVRTFQDLLKDEYDEDLFDYY 311 (958)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~d~~~~~~~~~~~~~~ 311 (958)
-...+.. ...++++|||++++++......... +........ +.+..+........+++....
T Consensus 171 qI~v~~~-----p~~v~~spdGk~a~vt~~nse~~~~----------id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v- 234 (441)
T d1qnia2 171 QVIVDGN-----LDNTDADYTGKYATSTCYNSERAVD----------LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI- 234 (441)
T ss_dssp EEEESSC-----CCCEEECSSSSEEEEEESCTTCCSS----------HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-
T ss_pred EEecCCC-----ccceEECCCCCEEEEEecCCCceEE----------EeccCcceEEEEEeCCccceEEEecCCCEEEe-
Confidence 2111221 5589999999999988544322210 000000000 000000000000001110000
Q ss_pred hcceEEEEEc---CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCcc-
Q 002164 312 ATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA- 387 (958)
Q Consensus 312 ~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~- 387 (958)
+...+..++. .+..+.|..+.....+.+||||++++.+... ...+.+||++.-. .+......
T Consensus 235 ~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~------------~~tvsv~d~~k~~--~~~~~~~~~ 300 (441)
T d1qnia2 235 GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL------------SPTVSVIAIDKLD--DLFEDKIEL 300 (441)
T ss_dssp TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTT------------SSBEEEEEGGGHH--HHTTTSSCG
T ss_pred CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCc------------CCcEEEEEeehhh--hHhhccCCc
Confidence 1122334443 2334555555556778999999999887633 4489999986311 10000000
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCC----CCCCCce----EE-----Eee
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP----VQGEGPE----IL-----HKL 454 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~g~~~~----~l-----~~~ 454 (958)
...-........++-.-+|+++|. +|.+- ....++..|+++. ..+.+.. .+ ..+
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~--~yts~-----------~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH 367 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGN--AYTTL-----------FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH 367 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSE--EEEEE-----------TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE
T ss_pred ceEEEeecccccCcccceecCCce--EEEcc-----------cccceEEEeccchhhhhhccCCCceeEeccccccCCCC
Confidence 000000011112222346777664 44332 2344667776410 0122221 11 234
Q ss_pred ccccCceeeecCCceEEEEE
Q 002164 455 DLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~ 474 (958)
.....+.+++||||+|+...
T Consensus 368 ~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 368 NHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEETTTTSTTCCCCEEEEEE
T ss_pred CccccccccCCCCcEEEecC
Confidence 44567789999999998774
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.2e-06 Score=89.95 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=112.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
+....+++|+..++... ...+.+++..+++......... ...+++++++.+++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~------ 139 (287)
T d1pgua2 83 PKVASANNDGFTAVLTN----------DDDLLILQSFTGDIIKSVRLNS-------PGSAVSLSQNYVAVGLEE------ 139 (287)
T ss_dssp EEEEEECSSSEEEEEET----------TSEEEEEETTTCCEEEEEECSS-------CEEEEEECSSEEEEEETT------
T ss_pred eeeeeeccCCceEEEee----------cccceeeeccceeeeeeccccc-------eeeeeeccCcceeeeccc------
Confidence 44567888887776643 4467888887776654433222 245677888888766211
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCe-eeecCCC--ccccccccCCCCcEE
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--AVYTSLDPSPDEKYI 346 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~l~~~--~~~~~~~~SpDGk~l 346 (958)
...+.++++ +.. ...+... ..+..++|||||++|
T Consensus 140 ------------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 140 ------------------------------------------GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177 (287)
T ss_dssp ------------------------------------------TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred ------------------------------------------cceeeeeeccccceeeeeeeccCCceeEEEeccCcccc
Confidence 122445555 322 2222222 567889999999999
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+....+ +.+.+||+..+...... .. .....+..++|+|+++..... ...+...
T Consensus 178 ~~g~~d-------------g~i~i~d~~~~~~~~~~-~~----------~h~~~v~~~~~~p~~~~~~~~---~~~~~~l 230 (287)
T d1pgua2 178 AAGDVM-------------GKILLYDLQSREVKTSR-WA----------FRTSKINAISWKPAEKGANEE---EIEEDLV 230 (287)
T ss_dssp EEEETT-------------SCEEEEETTTTEEEECC-SC----------CCSSCEEEEEECCCC---------CCSCCEE
T ss_pred cccccc-------------ccccceeeccccccccc-cc----------ccccccceeeecccccccccc---cCCCCee
Confidence 887633 48999999866543211 11 111345678899887654332 1111111
Q ss_pred cccccCCeEEEEeCCCCCCCCc-eEEEeeccccCceeeecCCceEEEEEeccccceEEEEE
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (958)
+..+..+.|++|++ ..+.+. +.+..+...+..+.|+||++ |+.... ++ ..++|.+
T Consensus 231 ~sgs~D~~i~iw~~--~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~-D~-~v~iW~i 286 (287)
T d1pgua2 231 ATGSLDTNIFIYSV--KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA-DA-CIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEES--SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEET-TS-CEEEEEE
T ss_pred EeecCCCeEEEEEC--CCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEEC-CC-eEEEEEE
Confidence 22244567999996 233333 33344566788899999975 544433 32 3777764
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.55 E-value=2.2e-07 Score=97.33 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=61.4
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 703 ~~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
.....|+++||.|++ .+.+|+|.+...........+++.. +.+. .+.++|.++||||||.++..++.++|+
T Consensus 32 ~~~~~L~~~G~~V~~---~~~~g~g~s~~~~~~~~~l~~~i~~----~~~~--~~~~~v~lvGhS~GG~~~~~~~~~~p~ 102 (319)
T d1cvla_ 32 GIQSDLQSHGAKVYV---ANLSGFQSDDGPNGRGEQLLAYVKQ----VLAA--TGATKVNLIGHSQGGLTSRYVAAVAPQ 102 (319)
T ss_dssp THHHHHHHTTCCEEE---CCCBCSSCTTSTTSHHHHHHHHHHH----HHHH--HCCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHCCCEEEE---ecCCCCCCCCCCcccHHHHHHHHHH----HHHH--hCCCCEEEEeccccHHHHHHHHHHCcc
Confidence 356688999999999 4556777665444444444444433 3332 234699999999999999999999999
Q ss_pred ceeEEEEeccCC
Q 002164 783 LFCCGIARSGAY 794 (958)
Q Consensus 783 ~~~a~v~~~~~~ 794 (958)
+++.+|.++++.
T Consensus 103 ~v~~vv~i~~p~ 114 (319)
T d1cvla_ 103 LVASVTTIGTPH 114 (319)
T ss_dssp GEEEEEEESCCT
T ss_pred ccceEEEECCCC
Confidence 999999998754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=4.3e-06 Score=87.22 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=37.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCce-eecc---CCCCccccccccceEEecCCe-EEEEE
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLF---QSPDIYLNAIFDNFVWVNNST-LLVCT 261 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~-~~lt---~~~~~~~~~~~~~~~wspDG~-~l~~~ 261 (958)
.+...+|||||++||..+. ...|.+|+++++.. ..+. .... .+..++|+|++. .|+..
T Consensus 13 ~I~~l~fsp~~~~L~s~s~---------Dg~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSW---------DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET---------TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEEC---------CCeEEEEEccCCCcceEEEEecCCCC-----CEEEEEEeCCCCCEEEEc
Confidence 6899999999999988652 44666667654432 1221 1222 277899998764 55543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.51 E-value=7.9e-06 Score=85.05 Aligned_cols=216 Identities=10% Similarity=0.105 Sum_probs=120.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCc-cccccccceEEecCCeEEEEEecCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-YLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~-~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....++|||+.|+... ....|.+++.+++....+...... .++ ....+++.+||. |+++........
T Consensus 73 P~Gl~~~~dg~~l~vad---------~~~~i~~~~~~g~~~~~~~~~~~g~~~~-~pndl~~d~~G~-lyvtd~~~~~~~ 141 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVAD---------MRLGLLVVQTDGTFEEIAKKDSEGRRMQ-GCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp EEEEEECSSSSEEEEEE---------TTTEEEEEETTSCEEECCSBCTTSCBCB-CCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ceeEEEeCCCCEEEEEE---------CCCeEEEEeCCCcEEEEEeccccccccC-CCcEEEECCCCC-EEEecCccCccc
Confidence 34578999998776643 245689999888765544332221 111 134678889996 455421110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCc----
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEK---- 344 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk---- 344 (958)
.. ...... .....||+++.+|+...+... .....++|+||++
T Consensus 142 --------------~~------------~~~~~~-------~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~ 188 (314)
T d1pjxa_ 142 --------------AD------------YTRSMQ-------EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp --------------SC------------CCBTTS-------SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEE
T ss_pred --------------cc------------ccceec-------cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCccee
Confidence 00 000000 034578888887766655443 3345678988875
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccC-ceEE---EeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVR---ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~-~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
.|+++... .++|+.+++++ +... .+...+... ...+.++++..||+ |++ ++
T Consensus 189 ~lyv~d~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~---------~~~pdGiavD~~Gn-lyV-a~-- 243 (314)
T d1pjxa_ 189 QLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH---------EGGADGMDFDEDNN-LLV-AN-- 243 (314)
T ss_dssp EEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS---------SCEEEEEEEBTTCC-EEE-EE--
T ss_pred EEEEEeec------------ccceEEeeccCccccceeeEEEEccccc---------cccceeeEEecCCc-EEE-EE--
Confidence 45555322 34888888762 2221 112211110 02345788989986 333 11
Q ss_pred cCCCcccccccCCeEEEEeCCCCCCCCce-EEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
...+.|++++. +++... .+.........++|.||++.|+.+...+ .+||++++.-
T Consensus 244 ---------~~~g~I~~~dp---~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~~ 299 (314)
T d1pjxa_ 244 ---------WGSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQR 299 (314)
T ss_dssp ---------ETTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECSS
T ss_pred ---------cCCCEEEEEeC---CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECCC
Confidence 23567999984 555543 3443334456799999999887765433 4799988755
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=9.5e-07 Score=90.84 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=86.5
Q ss_pred eEEEEEc-CCeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCccc
Q 002164 315 QLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (958)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~ 393 (958)
.+..++. +++....... .....+++|+++.+++.... .+.+.+|++...........+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~------------~~~v~~~~~~~~~~~~~~~~~~------- 161 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEE------------GNTIQVFKLSDLEVSFDLKTPL------- 161 (287)
T ss_dssp EEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETT------------TSCEEEEETTEEEEEEECSSCC-------
T ss_pred cceeeeccceeeeeeccc-cceeeeeeccCcceeeeccc------------cceeeeeeccccceeeeeeecc-------
Confidence 4666666 5543322211 12234678899998887743 2368899987443322111111
Q ss_pred ccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCce--EEEeeccccCceeeecCCc---
Q 002164 394 FNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSL--- 468 (958)
Q Consensus 394 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~--- 468 (958)
...+..++|+|||+.|+.- +..+.+.+|++ ..+... .+..+...+..++|+|+++
T Consensus 162 ----~~~v~~~~~s~~~~~l~~g-------------~~dg~i~i~d~---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 162 ----RAKPSYISISPSETYIAAG-------------DVMGKILLYDL---QSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp ----SSCEEEEEECTTSSEEEEE-------------ETTSCEEEEET---TTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred ----CCceeEEEeccCccccccc-------------cccccccceee---cccccccccccccccccceeeecccccccc
Confidence 1335678999999987763 34567888985 322211 1123344566778887653
Q ss_pred -------eEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEE
Q 002164 469 -------ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (958)
Q Consensus 469 -------~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (958)
.|+..+ .++ .|+++++..+ .+.......+...+.. +.|+||++ |+..
T Consensus 222 ~~~~~~~~l~sgs-~D~---~i~iw~~~~~-~~~~~~~~~h~~~V~~------v~~~~~~~-l~s~ 275 (287)
T d1pgua2 222 EEEIEEDLVATGS-LDT---NIFIYSVKRP-MKIIKALNAHKDGVNN------LLWETPST-LVSS 275 (287)
T ss_dssp --CCSCCEEEEEE-TTS---CEEEEESSCT-TCCEEETTSSTTCEEE------EEEEETTE-EEEE
T ss_pred cccCCCCeeEeec-CCC---eEEEEECCCC-CeEEEEeCCCCCCeEE------EEECCCCE-EEEE
Confidence 444333 222 2445555443 2333333444444444 78999885 4433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.49 E-value=8.9e-06 Score=84.62 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=128.4
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002164 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (958)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (958)
...|+|.|||+ |+|+.... .........|+++++++++...+..............+++.+||..|++..
T Consensus 20 ~EGpa~d~dG~-ly~~~~~~-~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad-------- 89 (314)
T d1pjxa_ 20 AEGPVFDKNGD-FYIVAPEV-EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-------- 89 (314)
T ss_dssp CEEEEECTTSC-EEEEETTC-EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE--------
T ss_pred CeEeEEeCCCC-EEEEECcc-ccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE--------
Confidence 45689999996 55554211 000112457999999988765543221111001123688999998887661
Q ss_pred CCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecC-CC------ccccccccCCCC
Q 002164 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG-PP------AVYTSLDPSPDE 343 (958)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~-~~------~~~~~~~~SpDG 343 (958)
....|.+++.+|....+. .. ......++.|||
T Consensus 90 -----------------------------------------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G 128 (314)
T d1pjxa_ 90 -----------------------------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG 128 (314)
T ss_dssp -----------------------------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS
T ss_pred -----------------------------------------CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC
Confidence 123477888855333332 21 123567899999
Q ss_pred cEEEEEeecCCc---cccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC---ceEEE
Q 002164 344 KYILISSIHRPY---SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS---TLYWA 417 (958)
Q Consensus 344 k~l~~~~~~~~~---~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~---l~~~~ 417 (958)
+ |+|+...... ..........+.++.++.+++..+..... .....++|+||+.. .+|.+
T Consensus 129 ~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~--------------~~pNGi~~~~d~d~~~~~lyv~ 193 (314)
T d1pjxa_ 129 N-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF--------------QFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp C-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE--------------SSEEEEEEEECTTSCEEEEEEE
T ss_pred C-EEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc--------------ceeeeeEECCCCCcceeEEEEE
Confidence 6 5555322110 00000112235677787776554433221 12357889998762 23322
Q ss_pred EeccCCCcccccccCCeEEEEeCCCCCCCCce--EE-Eeec----cccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--IL-HKLD----LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l-~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+ .....|+.+++. ..+... ++ .... ....++++..+|+ |+.+.+.. .+|+++++++
T Consensus 194 d-----------~~~~~i~~~d~~--~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~---g~I~~~dp~~ 256 (314)
T d1pjxa_ 194 E-----------TPTKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS---SHIEVFGPDG 256 (314)
T ss_dssp E-----------TTTTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT---TEEEEECTTC
T ss_pred e-----------ecccceEEeecc--CccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCC---CEEEEEeCCC
Confidence 2 235578887751 122221 11 1111 1123577888886 44443333 4799999987
Q ss_pred CCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEe
Q 002164 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (958)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (958)
+. .......+.....+ ++|.||++.|+...
T Consensus 257 g~--~~~~i~~p~~~~t~------~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 257 GQ--PKMRIRCPFEKPSN------LHFKPQTKTIFVTE 286 (314)
T ss_dssp BS--CSEEEECSSSCEEE------EEECTTSSEEEEEE
T ss_pred CE--EEEEEECCCCCEEE------EEEeCCCCEEEEEE
Confidence 52 22222221111111 77899998876654
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.3e-07 Score=107.33 Aligned_cols=128 Identities=18% Similarity=0.151 Sum_probs=87.7
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCcc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~~ 730 (958)
|...+|.|++...+ .++||+|++|||.+..+. ...+.. ...++.++.+||.++||-. .|+-...
T Consensus 97 L~LnI~~P~~~~~~--~~lPV~v~ihGG~~~~gs--------~~~~~~-----~~~~~~~~vIvVt~nYRLg~~GFl~~~ 161 (532)
T d2h7ca1 97 LYLNIYTPADLTKK--NRLPVMVWIHGGGLMVGA--------ASTYDG-----LALAAHENVVVVTIQYRLGIWGFFSTG 161 (532)
T ss_dssp CEEEEEECSCTTSC--CCEEEEEEECCSTTTSCC--------STTSCC-----HHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CEEEEEECCCCCCC--CCcEEEEEEeCCcccccc--------cccCCc-----hhhhhcCceEEEEEeeccCCCcccccc
Confidence 55678889764333 359999999999765432 222211 2345788999999888632 2221110
Q ss_pred cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCC
Q 002164 731 ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAY 794 (958)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~ 794 (958)
.........+.|...|++|++++ ---||++|-|+|+|+||..+..++.. ...+|..+|+.+|..
T Consensus 162 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 162 DEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 11111235689999999999985 23699999999999999998887764 335899999999753
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.48 E-value=8.2e-08 Score=108.95 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=86.1
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCcc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~~ 730 (958)
|...+|.|+.....+ ++|||||+|||.+..+.. ..+..........++.++++||.++||-. .|+-...
T Consensus 98 L~LnI~~P~~~~~~~--~~PVlv~ihGG~f~~g~~--------~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~ 167 (534)
T d1llfa_ 98 LTINVVRPPGTKAGA--NLPVMLWIFGGGFEIGSP--------TIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD 167 (534)
T ss_dssp CEEEEEECTTCCTTC--CEEEEEEECCSTTTSCCG--------GGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH
T ss_pred CEEEEEECCCCCCCC--CCeEEEEECCCccccCCC--------CCCCchhccchhhhccCCeEEEEeecCCCcccccCCc
Confidence 666889997654433 499999999997654322 11211111112234568999999888632 1211110
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh-----CC---CceeEEEEeccC
Q 002164 731 --ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH-----AP---HLFCCGIARSGA 793 (958)
Q Consensus 731 --~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~-----~p---~~~~a~v~~~~~ 793 (958)
.....+...+.|+..|++|++++ ---||++|.|+|+|.||.++...+.. .| .+|..+|+.+|.
T Consensus 168 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 168 DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 01112335789999999999996 22699999999999999988766642 11 369999999974
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.48 E-value=1.7e-06 Score=91.08 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=47.9
Q ss_pred ccCCCCCCEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHH
Q 002164 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~p-~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.+.+|++|+|||.++.|..+| +++.+++.+.++. .++.+++ ..||.-. -.+...+...|.+||+
T Consensus 311 aL~~I~a~~LvI~~~sD~lFP--p~~~~e~a~~l~~----a~~~~I~S~~GHDaF-L~e~~~~~~~I~~FL~ 375 (376)
T d2vata1 311 ALAMITQPALIICARSDGLYS--FDEHVEMGRSIPN----SRLCVVDTNEGHDFF-VMEADKVNDAVRGFLD 375 (376)
T ss_dssp HHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHSTT----EEEEECCCSCGGGHH-HHTHHHHHHHHHHHHT
T ss_pred HHhhCCCCEEEEEeCcccCcC--HHHHHHHHHhcCC----CeEEEECCCCCcccc-ccCHHHHHHHHHHHHc
Confidence 367899999999999999999 9999999888864 6888888 5678421 1223455566666664
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.45 E-value=1.2e-07 Score=107.58 Aligned_cols=130 Identities=22% Similarity=0.303 Sum_probs=86.9
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHH-HHHH-HHCCcEEEEcCCCCC-CCCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS-VLLW-LARGFAILGGPTTPI-IGEGD 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-a~~G~~vl~~~~~~~-~G~G~ 728 (958)
|+..+|.|++....+ ++||||++|||.+..+... .+. +... ...+ +.++++||.++||-. .|+-.
T Consensus 106 L~LnI~~P~~~~~~~--~lPV~V~ihGG~f~~G~~~--------~~~--~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~ 173 (544)
T d1thga_ 106 LYLNVFRPAGTKPDA--KLPVMVWIYGGAFVYGSSA--------AYP--GNSYVKESINMGQPVVFVSINYRTGPFGFLG 173 (544)
T ss_dssp CEEEEEEETTCCTTC--CEEEEEEECCCTTCCSGGG--------GCC--SHHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCCCC--CCCEEEEeccCCCccCCCc--------cCC--cchhhhhhhhccCCeEEEecccccccccccC
Confidence 666888898755544 4999999999976654321 111 1111 2223 457899999888521 12211
Q ss_pred c--ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEeccC
Q 002164 729 E--EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGA 793 (958)
Q Consensus 729 ~--~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~ 793 (958)
. ..........+.|...|++|++++ ---||++|.|+|+|.||.++..++... ..+|+.+|+.+|.
T Consensus 174 ~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 174 GDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred CchhhccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 1 001112346799999999999996 236999999999999999888776532 2489999999974
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.42 E-value=2.2e-05 Score=81.18 Aligned_cols=136 Identities=15% Similarity=0.023 Sum_probs=74.6
Q ss_pred cceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC--ceEEEeccCCcccc
Q 002164 313 TTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAED 389 (958)
Q Consensus 313 ~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~~~~~~~ 389 (958)
..+||+++.+|+.+.+... .....++|+|||+.++... . ...+++++..+ +....+...+..
T Consensus 48 ~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~-- 112 (302)
T d2p4oa1 48 VGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW-N------------ADSIPVVSLVKSDGTVETLLTLPDA-- 112 (302)
T ss_dssp TTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEE-C------------TTSCEEEEEECTTSCEEEEEECTTC--
T ss_pred CCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEec-C------------CceEEEEEecccccceeeccccCCc--
Confidence 3568999887766655544 6677889999999544433 2 12566666653 333344332211
Q ss_pred CcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cc--------cCc
Q 002164 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LR--------YGG 460 (958)
Q Consensus 390 ~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~--------~~~ 460 (958)
.....+.+.+||+.++. + .....+|.++. .++......... .. ...
T Consensus 113 ---------~~~n~i~~~~~g~~~v~--~-----------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T d2p4oa1 113 ---------IFLNGITPLSDTQYLTA--D-----------SYRGAIWLIDV---VQPSGSIWLEHPMLARSNSESVFPAA 167 (302)
T ss_dssp ---------SCEEEEEESSSSEEEEE--E-----------TTTTEEEEEET---TTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ---------cccceeEEccCCCEEee--c-----------cccccceeeec---cCCcceeEecCCccceeeccCccccc
Confidence 22356788899853222 1 33556787774 443333222111 00 011
Q ss_pred eeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.|+..+++..... .+||+++.+..
T Consensus 168 ngi~~~~~~l~~~~~~~---~~i~~~~~~~~ 195 (302)
T d2p4oa1 168 NGLKRFGNFLYVSNTEK---MLLLRIPVDST 195 (302)
T ss_dssp EEEEEETTEEEEEETTT---TEEEEEEBCTT
T ss_pred ccccccCCceeeecCCC---CeEEecccccc
Confidence 12344667777764433 57898887764
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.40 E-value=2.4e-07 Score=103.62 Aligned_cols=128 Identities=23% Similarity=0.183 Sum_probs=85.8
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCC--C
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEG--D 728 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G--~ 728 (958)
|+..+|.|+. +. .++||+|++|||.+..+....... ......++++++||.++||-. .|+= .
T Consensus 82 L~lni~~P~~--~~--~~lPV~v~ihGG~~~~g~~~~~~~-----------~~~~~~~~~~vVvV~~nYRlg~~GFl~~~ 146 (483)
T d1qe3a_ 82 LYVNVFAPDT--PS--QNLPVMVWIHGGAFYLGAGSEPLY-----------DGSKLAAQGEVIVVTLNYRLGPFGFLHLS 146 (483)
T ss_dssp CEEEEEEECS--SC--CSEEEEEEECCSTTTSCCTTSGGG-----------CCHHHHHHHTCEEEEECCCCHHHHSCCCT
T ss_pred CEEEEEECCC--CC--CCCceEEEEeecccccCCcccccc-----------ccccccccCceEEEeecccccchhhcccc
Confidence 6778888974 22 249999999998765433211111 012244556899999888632 1221 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCC
Q 002164 729 EEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY 794 (958)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~ 794 (958)
.......+...+.|+..|++|++++ ---||++|.|+|+|+||..+..++... ..+|..+|+.+|..
T Consensus 147 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 147 SFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 0001112346689999999999986 236999999999999999988777642 35899999999853
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=6.6e-06 Score=88.90 Aligned_cols=133 Identities=8% Similarity=-0.084 Sum_probs=81.1
Q ss_pred ceEEEEEc-CCeeee-------cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce-EEEecc
Q 002164 314 TQLVLVSL-DGTVKE-------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCD 383 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~-------l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~-~~~l~~ 383 (958)
..|.++++ +++... +... ..+..++|||||+.|+..+.+.. ...+.+||++.+. ...+..
T Consensus 205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECB
T ss_pred CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeecc
Confidence 34667777 554221 1222 56788999999999998875531 2358899998554 444433
Q ss_pred CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccC----
Q 002164 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYG---- 459 (958)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~---- 459 (958)
............++...+..++|+|||+.|+-. +.++.|.+||+ ..|.....+..+...+.
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~-------------s~D~~v~vWd~--~~g~~~~~l~gH~~~v~~~~~ 339 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-------------GWDGKLRFWDV--KTKERITTLNMHCDDIEIEED 339 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEE-------------ETTSEEEEEET--TTTEEEEEEECCGGGCSSGGG
T ss_pred ccccccceeeeecccCceeeeccCCCCCeeEEE-------------CCCCEEEEEEC--CCCCEEEEECCcCCcccCCcc
Confidence 222222222334455667889999999977652 55678999996 33433444554444443
Q ss_pred ceeeecCCceEE
Q 002164 460 GISWCDDSLALV 471 (958)
Q Consensus 460 ~~~~spDg~~l~ 471 (958)
.+.|+|+|..++
T Consensus 340 ~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 340 ILAVDEHGDSLA 351 (393)
T ss_dssp CCCBCTTSCBCS
T ss_pred EEEECCCCCEEE
Confidence 478999998764
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=3.4e-07 Score=104.07 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=85.3
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCC----CCCCC
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP----IIGEG 727 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~----~~G~G 727 (958)
|...+|.|..- .. .++||+||+|||.+..+....... .. ....++++.+||.++||- +...+
T Consensus 97 L~LnI~~P~~~-~~--~~lPV~v~ihGG~~~~gs~~~~~~----------~~-~~~~~~~~vvvVt~nYRlg~~Gfl~~~ 162 (542)
T d2ha2a1 97 LYLNVWTPYPR-PA--SPTPVLIWIYGGGFYSGAASLDVY----------DG-RFLAQVEGAVLVSMNYRVGTFGFLALP 162 (542)
T ss_dssp CEEEEEEESSC-CS--SCEEEEEEECCSTTTCCCTTSGGG----------CT-HHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEecCCC-CC--CCCcEEEEEEECccccccCccccc----------Cc-hhhhhhccceeEeeeeeccceeeeccc
Confidence 56678888742 22 349999999998765433211111 01 223345899999988862 21112
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
.. ....+...+.|+..|++|++++ ---||++|.|+|+|+||..+..++... ..+|..+|+.+|...
T Consensus 163 ~~--~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~~ 233 (542)
T d2ha2a1 163 GS--REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPN 233 (542)
T ss_dssp TC--SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCSS
T ss_pred cc--ccCCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeeccccC
Confidence 11 1112235688999999999986 236999999999999999998877643 258999999988543
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.37 E-value=4e-07 Score=102.66 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCC-CCCCCc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPI-IGEGDE 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~-~G~G~~ 729 (958)
|...+|.|+..... .++||+|++|||.+..+. ...+. + . ...++ ..+++||.++||-. .|+=..
T Consensus 81 L~LnI~~P~~~~~~--~~~PV~v~ihGG~~~~G~--------~~~~~--~-~-~~~~~~~~~vVvVt~nYRlg~~GFl~~ 146 (517)
T d1ukca_ 81 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENS--------NANYN--G-T-QVIQASDDVIVFVTFNYRVGALGFLAS 146 (517)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCC--------SCSCC--C-H-HHHHHTTSCCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEeCCCCCCC--CCceEEEEEcCCccccCC--------Ccccc--c-h-hhhhhhccccceEEEEecccceeecCc
Confidence 55678889764333 359999999999765543 22221 1 1 12233 46788888888531 121111
Q ss_pred cc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh----CCCceeEEEEeccCCC
Q 002164 730 EA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH----APHLFCCGIARSGAYN 795 (958)
Q Consensus 730 ~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~~~~~ 795 (958)
.. ........+.|...|++|++++ ---||++|.|+|+|+||..+...+.. ...+|..+|+.+|...
T Consensus 147 ~~~~~~~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~ 221 (517)
T d1ukca_ 147 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP 221 (517)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccc
Confidence 00 0111246789999999999996 23699999999999999998765543 2248999999998643
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.37 E-value=7.2e-07 Score=91.25 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 002164 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL 783 (958)
Q Consensus 704 ~~~~la~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~ 783 (958)
....|.++||.|++++. .|+|... ...+++.+.|+.+.+. ...+++.++||||||.++..++.++|++
T Consensus 31 i~~~L~~~G~~v~~~~~---~~~~~~~-------~~a~~l~~~i~~~~~~--~g~~~v~ligHS~GG~~~r~~~~~~p~~ 98 (285)
T d1ex9a_ 31 IPSALRRDGAQVYVTEV---SQLDTSE-------VRGEQLLQQVEEIVAL--SGQPKVNLIGHSHGGPTIRYVAAVRPDL 98 (285)
T ss_dssp HHHHHHHTTCCEEEECC---CSSSCHH-------HHHHHHHHHHHHHHHH--HCCSCEEEEEETTHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCCCEEEEeCC---CCCCCcH-------HHHHHHHHHHHHHHHH--cCCCeEEEEEECccHHHHHHHHHHCCcc
Confidence 56688999999999544 4555432 2223333444444443 2346899999999999999999999999
Q ss_pred eeEEEEeccCC
Q 002164 784 FCCGIARSGAY 794 (958)
Q Consensus 784 ~~a~v~~~~~~ 794 (958)
++.+|.++.+.
T Consensus 99 v~~lv~i~tPh 109 (285)
T d1ex9a_ 99 IASATSVGAPH 109 (285)
T ss_dssp EEEEEEESCCT
T ss_pred ceeEEEECCCC
Confidence 99999988653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=1.5e-05 Score=86.02 Aligned_cols=153 Identities=12% Similarity=0.060 Sum_probs=87.3
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEE-EeccCCccccCcccccccccCcceeeeecCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG 410 (958)
..+..++||||| .|+..+. ++.|.+||+.+++.. .+..... ..++...+..++|||||
T Consensus 185 ~~~~~v~~s~dg-~lasgs~-------------Dg~i~iwd~~~~~~~~~~~~~~~-------l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 185 QFATSVDISERG-LIATGFN-------------NGTVQISELSTLRPLYNFESQHS-------MINNSNSIRSVKFSPQG 243 (393)
T ss_dssp CCCCEEEECTTS-EEEEECT-------------TSEEEEEETTTTEEEEEEECCC----------CCCCCEEEEEECSST
T ss_pred CcEEEEEECCCC-EEEEEeC-------------CCcEEEEeecccccccccccccc-------cccccceEEEccccccc
Confidence 445678999998 4544332 358999999865432 2221110 01222456789999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEE-------------eeccccCceeeecCCceEEEEEecc
Q 002164 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-------------KLDLRYGGISWCDDSLALVYESWYK 477 (958)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-------------~~~~~~~~~~~spDg~~l~~~~~~~ 477 (958)
+.|+.-..- .....+.+||+ ..+.....+. .+...+..++|||||+.|+..+.+.
T Consensus 244 ~~l~sgs~D----------~t~~~i~lwd~--~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~ 311 (393)
T d1sq9a_ 244 SLLAIAHDS----------NSFGCITLYET--EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311 (393)
T ss_dssp TEEEEEEEE----------TTEEEEEEEET--TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceeeeecCC----------CCcceeeeccc--ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence 987763110 01124677885 2333333331 2345577899999999988765544
Q ss_pred ccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEE
Q 002164 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVI 525 (958)
Q Consensus 478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 525 (958)
. |.++|+.++ +.......+...+.. ....+.|+|+|+.++
T Consensus 312 ~----v~vWd~~~g--~~~~~l~gH~~~v~~--~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 312 K----LRFWDVKTK--ERITTLNMHCDDIEI--EEDILAVDEHGDSLA 351 (393)
T ss_dssp E----EEEEETTTT--EEEEEEECCGGGCSS--GGGCCCBCTTSCBCS
T ss_pred E----EEEEECCCC--CEEEEECCcCCcccC--CccEEEECCCCCEEE
Confidence 3 555566664 344444554444432 112256899998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=0.00021 Score=73.95 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=43.5
Q ss_pred CceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCe
Q 002164 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (958)
...+.|+++. ..+.. .+++||++||... ....|.+||+.+++..+........ +..++|+|+
T Consensus 7 ~~~~~l~GH~--~~V~s-~~~~~g~~l~sgs---------~Dg~i~vWd~~~~~~~~~~~~h~~~----V~~v~~~~~-- 68 (342)
T d2ovrb2 7 KSPKVLKGHD--DHVIT-CLQFCGNRIVSGS---------DDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMRDN-- 68 (342)
T ss_dssp CCCEEEECST--TSCEE-EEEEETTEEEEEE---------TTSCEEEEETTTCCEEEECCCCSSC----EEEEEEETT--
T ss_pred CcCEEECCcC--CceEE-EEEECCCEEEEEe---------CCCeEEEEECCCCCEEEEEeCCCCC----EEEEEeCCC--
Confidence 3455677654 33433 4788999988754 2557889999998876554433332 678889876
Q ss_pred EEEEE
Q 002164 257 LLVCT 261 (958)
Q Consensus 257 ~l~~~ 261 (958)
.|+..
T Consensus 69 ~l~s~ 73 (342)
T d2ovrb2 69 IIISG 73 (342)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 55544
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.34 E-value=3.7e-07 Score=103.47 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=86.0
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCcc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDEE 730 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~~ 730 (958)
|...+|.|... ..++||+||+|||.+..+....... .....+++++.+||.++||-. .|+-...
T Consensus 92 L~LnI~~P~~~----~~~lPV~v~ihGG~~~~g~~~~~~~-----------~~~~~~~~~~vvvVt~nYRlg~~GFl~~~ 156 (532)
T d1ea5a_ 92 LYLNIWVPSPR----PKSTTVMVWIYGGGFYSGSSTLDVY-----------NGKYLAYTEEVVLVSLSYRVGAFGFLALH 156 (532)
T ss_dssp CEEEEEECSSC----CSSEEEEEEECCSTTTCCCTTCGGG-----------CTHHHHHHHTCEEEECCCCCHHHHHCCCT
T ss_pred CEEEEEeCCCC----CCCCcEEEEEEcCCcccccCCcccc-----------CcchhhcccCccEEEEeeccccccccccc
Confidence 55677888642 2249999999999765443221111 112245678999999888632 1211100
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 731 -ANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 731 -~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
.....+...+.|...|++|++++ ---||++|.|+|+|+||..+..++... ..+|..+|+.++...
T Consensus 157 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 157 GSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp TCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 11112234689999999999996 236999999999999999988777632 258999999987643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.34 E-value=4e-05 Score=79.74 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=121.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.....+++|||+.++ +.. .+......|+..+..++....+...... ......+++.+||+ |+++.......
T Consensus 83 ~p~gla~~~dG~l~v-a~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~nd~~~d~~G~-l~vtd~~~~~~- 153 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFV-CYL----GDFKSTGGIFAATENGDNLQDIIEDLST--AYCIDDMVFDSKGG-FYFTDFRGYST- 153 (319)
T ss_dssp SEEEEEECTTSCEEE-EEC----TTSSSCCEEEEECTTSCSCEEEECSSSS--CCCEEEEEECTTSC-EEEEECCCBTT-
T ss_pred CeeEEEECCCCCEEE-Eec----CCCccceeEEEEcCCCceeeeeccCCCc--ccCCcceeEEeccc-eeecccccccc-
Confidence 456788999997443 321 1122355688888887776555432221 11145788999997 55541110000
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCC-eeeecCCC-ccccccccCCCCcEEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (958)
.....+|+++.+| ..+.+... .....++|||||+.|+
T Consensus 154 -----------------------------------------~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 154 -----------------------------------------NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp -----------------------------------------BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred -----------------------------------------cCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 0235688888844 55555544 4456789999999998
Q ss_pred EEeecCCccccccCCCCCceeEEEeccC--ceEEEecc-CCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCD-LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~--~~~~~l~~-~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
++... .+.|+.++++. ........ ..... ....++..+++.+||+ |++ +.
T Consensus 193 vad~~------------~~~I~~~d~~~~g~~~~~~~~~~~~~~-------~~~~~PdGl~vD~~G~-l~V-a~------ 245 (319)
T d2dg1a1 193 VTETT------------ANRLHRIALEDDGVTIQPFGATIPYYF-------TGHEGPDSCCIDSDDN-LYV-AM------ 245 (319)
T ss_dssp EEEGG------------GTEEEEEEECTTSSSEEEEEEEEEEEC-------CSSSEEEEEEEBTTCC-EEE-EE------
T ss_pred Eeccc------------CCceEEEEEcCCCceeccccceeeecc-------CCccceeeeeEcCCCC-EEE-EE------
Confidence 88643 34888888763 22111110 00000 0002345788888886 333 11
Q ss_pred cccccccCCeEEEEeCCCCCCCCceEEEeec------cccCceeeecCCceEEEEEecc--ccceEEEEEcCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLD------LRYGGISWCDDSLALVYESWYK--TRRTRTWVISPGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~------~~~~~~~~spDg~~l~~~~~~~--~~~~~l~~~~~~~ 490 (958)
...+.|++++. +|.....+.-.. .....++|.+++..++.+.... .....||.++...
T Consensus 246 -----~~~g~V~~~~p---~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~ 311 (319)
T d2dg1a1 246 -----YGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 311 (319)
T ss_dssp -----ETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred -----cCCCEEEEECC---CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence 23457888883 665555553211 1245678989887777665422 2346788887654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=4e-05 Score=78.71 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=119.2
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..|.|.++...|+|+-- ....|+++++++++.+... .+.. +..+++.+||.+++..
T Consensus 21 Egp~wd~~~~~l~wvDi--------~~~~I~r~d~~~g~~~~~~-~~~~-----~~~i~~~~dg~l~va~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI--------LERELHELHLASGRKTVHA-LPFM-----GSALAKISDSKQLIAS---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEG--------GGTEEEEEETTTTEEEEEE-CSSC-----EEEEEEEETTEEEEEE----------
T ss_pred eCCeEECCCCEEEEEEC--------CCCEEEEEECCCCeEEEEE-CCCC-----cEEEEEecCCCEEEEE----------
Confidence 45999998889999642 3668999999998766442 2332 5578888999877754
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC------ccccccccCCCCc
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AVYTSLDPSPDEK 344 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~------~~~~~~~~SpDGk 344 (958)
...|++++. +|+.+.+... .......+.|+|+
T Consensus 77 -----------------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~ 115 (295)
T d2ghsa1 77 -----------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA 115 (295)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred -----------------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC
Confidence 134889998 8877766432 2356778999998
Q ss_pred EEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCC
Q 002164 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (958)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 424 (958)
. +++..... .....-.++.+..++.+.+...- .....+.|++|++.+++. +
T Consensus 116 i-w~~~~~~~--------~~~~~g~l~~~~~g~~~~~~~~~-------------~~~Ng~~~s~d~~~l~~~-d------ 166 (295)
T d2ghsa1 116 L-WIGTMGRK--------AETGAGSIYHVAKGKVTKLFADI-------------SIPNSICFSPDGTTGYFV-D------ 166 (295)
T ss_dssp E-EEEEEETT--------CCTTCEEEEEEETTEEEEEEEEE-------------SSEEEEEECTTSCEEEEE-E------
T ss_pred E-EEEecccc--------ccccceeEeeecCCcEEEEeecc-------------CCcceeeecCCCceEEEe-e------
Confidence 4 44433211 11223445555555554443210 122468999999988774 1
Q ss_pred cccccccCCeEEEEeCCCCCC---CCceEEEe---eccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 425 AKVEVTPRDIIYTQQAEPVQG---EGPEILHK---LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g---~~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+..+.||.++.+...+ ++...... ..+...+++...+|. |+.+.+.. .+|+++++++
T Consensus 167 -----t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~---g~V~~~dp~G 229 (295)
T d2ghsa1 167 -----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGE---GAVDRYDTDG 229 (295)
T ss_dssp -----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETT---TEEEEECTTC
T ss_pred -----cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCC---CceEEecCCC
Confidence 3456788887522111 11222222 122334567777885 44444443 3699999876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=5.1e-05 Score=77.88 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=136.1
Q ss_pred CceecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCccc
Q 002164 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (958)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~ 192 (958)
.|.|.++...|.|+--. . +.|+.++..+ +..+... ++ ..+.
T Consensus 22 gp~wd~~~~~l~wvDi~----------------------~----------~~I~r~d~~~----g~~~~~~-~~--~~~~ 62 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNIL----------------------E----------RELHELHLAS----GRKTVHA-LP--FMGS 62 (295)
T ss_dssp EEEEETTTTEEEEEEGG----------------------G----------TEEEEEETTT----TEEEEEE-CS--SCEE
T ss_pred CCeEECCCCEEEEEECC----------------------C----------CEEEEEECCC----CeEEEEE-CC--CCcE
Confidence 57789888888886431 0 2577777643 4433332 33 3456
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002164 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (958)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (958)
...+.+||+.++-+ ...|+++|.++|+.+.+.......-...+......|+|++.+.........
T Consensus 63 ~i~~~~dg~l~va~-----------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~---- 127 (295)
T d2ghsa1 63 ALAKISDSKQLIAS-----------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAET---- 127 (295)
T ss_dssp EEEEEETTEEEEEE-----------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT----
T ss_pred EEEEecCCCEEEEE-----------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccc----
Confidence 77888898655542 336999999999988776543321111255777889997544331110000
Q ss_pred CCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEee
Q 002164 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~ 351 (958)
....+|.++ +|+.+.+... .....+.||||++.++++..
T Consensus 128 ---------------------------------------~~g~l~~~~-~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt 167 (295)
T d2ghsa1 128 ---------------------------------------GAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDT 167 (295)
T ss_dssp ---------------------------------------TCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred ---------------------------------------cceeEeeec-CCcEEEEeeccCCcceeeecCCCceEEEeec
Confidence 223355443 6766666544 44567899999999988874
Q ss_pred cCCccccccCCCCCceeEEEeccCce------EEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCc
Q 002164 352 HRPYSFIVPCGRFPRQVGVWTTDGIF------VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (958)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~l~d~~~~~------~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 425 (958)
. .+.|+.++++... .......+. ....+.++....||. |.+ +.
T Consensus 168 ~------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~----------~~g~pdG~~vD~~Gn-lWv-a~------- 216 (295)
T d2ghsa1 168 K------------VNRLMRVPLDARTGLPTGKAEVFIDSTG----------IKGGMDGSVCDAEGH-IWN-AR------- 216 (295)
T ss_dssp T------------TCEEEEEEBCTTTCCBSSCCEEEEECTT----------SSSEEEEEEECTTSC-EEE-EE-------
T ss_pred c------------cceeeEeeecccccccccceEEEeccCc----------ccccccceEEcCCCC-EEe-ee-------
Confidence 3 3478888876321 111111111 113446677888886 222 11
Q ss_pred ccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeee-cCCceEEEEEe
Q 002164 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC-DDSLALVYESW 475 (958)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~~ 475 (958)
...+.|++++. +|+....+.-......+++|- +|.+.|+.++.
T Consensus 217 ----~~~g~V~~~dp---~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 217 ----WGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----ETTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ----eCCCceEEecC---CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 23456888884 666555554333456678885 78888888764
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=3.9e-07 Score=104.30 Aligned_cols=135 Identities=18% Similarity=0.127 Sum_probs=84.3
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCC-CCCCCc
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPI-IGEGDE 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~-~G~G~~ 729 (958)
|+..+|.|...... ..++|||||+|||.+..+...........-+. ...++. .+.+||.++||-. .|+-..
T Consensus 81 L~LNI~~P~~~~~~-~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~d------g~~la~~~~vIvVt~nYRlg~~GFl~~ 153 (579)
T d2bcea_ 81 LYLNIWVPQGRKEV-SHDLPVMIWIYGGAFLMGASQGANFLSNYLYD------GEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CEEEEEEEECSSSC-CCSEEEEEECCCCSEEEC-------CTTGGGC------CHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCCC-CCCCcEEEEECCCcccCCCCCCcccCCccccc------hhhhhccCCEEEEeecccccccccccc
Confidence 66678888653221 23499999999997654432211110000010 124454 5688898888521 121111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccC
Q 002164 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (958)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (958)
......+...+.|...|++|++++ ---||++|-|+|+|.||..+..++.. ...+|+.+|+.+|.
T Consensus 154 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 154 GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 011112346789999999999996 23699999999999999999877663 34689999999975
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=8.3e-07 Score=100.39 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=84.9
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCC-CCCCCc-
Q 002164 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI-IGEGDE- 729 (958)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~-~G~G~~- 729 (958)
|...+|.|... . .++||+|++|||.+..+.......+ .....++.+.+||.++||-. .|+-..
T Consensus 90 L~lnI~~P~~~--~--~~~PV~v~ihGG~~~~gs~~~~~~~-----------~~~~~~~~~vVvVt~nYRlg~~Gfl~~~ 154 (526)
T d1p0ia_ 90 LYLNVWIPAPK--P--KNATVLIWIYGGGFQTGTSSLHVYD-----------GKFLARVERVIVVSMNYRVGALGFLALP 154 (526)
T ss_dssp CEEEEEEESSC--C--SSEEEEEEECCSTTTSCCTTCGGGC-----------THHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEeCCCC--C--CCCceEEEEECCCcccccCcccccC-----------ccccccccceeEEecccccccccccCCC
Confidence 56678889642 2 2489999999997654432211111 12233467999999888632 121100
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEeccCCC
Q 002164 730 EANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (958)
Q Consensus 730 ~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (958)
......+...+.|...|++|++++ ---||++|-|+|+|+||..+..++.. ...+|..+|+.++...
T Consensus 155 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~~ 225 (526)
T d1p0ia_ 155 GNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 225 (526)
T ss_dssp TCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CcccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhccccccc
Confidence 011122345789999999999985 23699999999999999998776653 2357999999887543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.23 E-value=4.3e-06 Score=84.16 Aligned_cols=165 Identities=19% Similarity=0.095 Sum_probs=89.8
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEE
Q 002164 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCG 787 (958)
Q Consensus 711 ~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~ 787 (958)
..+.|+. .+..|+|.+.......+...+++.++ +++. ....++.|+||||||.+|..+|.+. ...+..+
T Consensus 69 ~~~~V~a---l~~pG~~~~e~~~~s~~~~a~~~~~~---i~~~--~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~l 140 (255)
T d1mo2a_ 69 GIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQADA---VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGV 140 (255)
T ss_dssp TTCCEEE---ECCTTSSTTCCEESSHHHHHHHHHHH---HHHT--TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEE
T ss_pred CCceEEE---EeCCCcCCCCCCCCCHHHHHHHHHHH---HHHh--CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEE
Confidence 3477888 44456555443333345555444444 3332 2235799999999999999988753 3457888
Q ss_pred EEeccCCCCCCC----------CCCccc---ccch-----hhhcHHHHHhcCcccccCCCCCCEEEEeeCCCCCCCCChH
Q 002164 788 IARSGAYNRTLT----------PFGFQN---EDRT-----LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTM 849 (958)
Q Consensus 788 v~~~~~~~~~~~----------~~~~~~---~~~~-----~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~ 849 (958)
+++.+..-.... ...... .... +......+..+. ...+.+|++++.+.+|.... ..
T Consensus 141 vlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~----~~~~~~p~l~v~a~~~~~~~--~~ 214 (255)
T d1mo2a_ 141 VLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAYDRLTGQWR----PRETGLPTLLVSAGEPMGPW--PD 214 (255)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHHHHHHHHHHHHCC----CCCCCCCEEEEECCSSSSCC--TT
T ss_pred EEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHHHHHHHHHHhcCC----CccccceEEEeecCCCCCcc--hh
Confidence 877653210000 000000 0000 001111122222 34578999999998775543 22
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002164 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (958)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~p~~~H~~~~~~~~~~~~~~i~~fl~ 895 (958)
.. +. .....+++.+.+|| +|...-.+....+.+.|.+||.
T Consensus 215 ~~--w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 215 DS--WK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp CC--CC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred hH--HH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 21 11 11234678889997 8863224566777778888874
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.23 E-value=0.00047 Score=62.85 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred eEEEEEcC--CeeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcc
Q 002164 315 QLVLVSLD--GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (958)
Q Consensus 315 ~l~~~~~~--g~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~ 392 (958)
.||..++. |+..++.....+.-.+..-|++.++|+.... ....+|-++|+..+.|+..|..
T Consensus 83 ai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase------------d~~~LYviegGklrkL~~vPpF----- 145 (313)
T d2hu7a1 83 ALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLPGF----- 145 (313)
T ss_dssp EEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEESSC-----
T ss_pred eEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC------------CceEEEEEeCCceeeeccCCCc-----
Confidence 48899984 8988887764344444455899999998553 3788999999999999886632
Q ss_pred cccccccCcceeeeecC--CCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceE
Q 002164 393 AFNSVRKGMRSINWRSD--KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (958)
Q Consensus 393 ~~~~~~~~~~~~~~spD--G~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (958)
.|--| |+.|+=.--. .+....+++.|+ .++..+.++..++.+....++++.+.
T Consensus 146 ------------sFVtDI~~d~I~G~g~~---------~g~~~sfF~adl---~SG~lri~tpkeGS~~~ay~~~gnKV- 200 (313)
T d2hu7a1 146 ------------GFVSDIRGDLIAGLGFF---------GGGRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKV- 200 (313)
T ss_dssp ------------EEEEEEETTEEEEEEEE---------ETTEEEEEEEET---TTEEEEEECCSSEEEEEEEECTTSCE-
T ss_pred ------------ceEEeccCCeEEEEeee---------cCCcceEEEEec---ccCCEEEecCCCCcccceeEccCcee-
Confidence 23222 4444322101 122334778874 67788888888999988999998876
Q ss_pred EEEEeccc-cceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceE---eccCCceEEEEe
Q 002164 471 VYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR---RTSTGTYVIAKI 528 (958)
Q Consensus 471 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~spdG~~l~~~~ 528 (958)
.+..++ +.+.+..+|+.++. ....+.+..+.++... -.+. +.||++.++...
T Consensus 201 --~sdyEt~gEsywit~D~~s~~---yerve~P~kd~~sy~p-~~I~~~~Y~Pdd~L~iiak 256 (313)
T d2hu7a1 201 --TAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSYRP-TAITWLGYLPDGRLAVVAR 256 (313)
T ss_dssp --EEEEEESSCEEEEEECTTTCC---EEECCCSSCHHHHHCC-SEEEEEEECTTSCEEEEEE
T ss_pred --eeccCCCCceEEEEEecccCc---eeeeecCcccceeecc-eEEEeeeeCCCCcEEEEEe
Confidence 233222 33445567877642 2222333333332100 0023 578887644443
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.22 E-value=1.7e-06 Score=98.80 Aligned_cols=117 Identities=19% Similarity=0.130 Sum_probs=78.3
Q ss_pred CCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHH-CCcEEEEcCCCCC-CCCC---C---c-ccchhhHH
Q 002164 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPI-IGEG---D---E-EANDRFVE 737 (958)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~vl~~~~~~~-~G~G---~---~-~~~~~~~~ 737 (958)
..++||+||+|||.+..+........ ...+++ .+.+||.++||-. .|+= . + ......+.
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~------------~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN 203 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIYN------------ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN 203 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGC------------CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC
T ss_pred CCCCeEEEEEeCCCccCCCCcccccc------------hhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc
Confidence 34599999999997654432211111 124444 4688888888532 2211 0 0 01112235
Q ss_pred HHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEeccCCC
Q 002164 738 QLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (958)
Q Consensus 738 ~~~~D~~~av~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (958)
..+.|...|++|++++ ---||++|-|+|+|+||..+..++... ...|..+|+.++...
T Consensus 204 ~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 204 VGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred ccchHHHHHHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 6789999999999996 236999999999999999998777643 357999999988644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=0.00048 Score=69.14 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=48.5
Q ss_pred eecCCCCEEEEEecCCCCCchhcccccceeeceeecCCCCCccceeeEeceeEEEccCCCCCCceeeeccCCCCCcccce
Q 002164 115 SFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFV 194 (958)
Q Consensus 115 ~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~dg~~~~~~~lt~~~~~~~~~~~ 194 (958)
.+++||++||..+.+ +.|.||++.+ + ...+.+.++. ..+...
T Consensus 20 c~~~d~~~l~sgs~D---------------------------------g~i~vWd~~~-~--~~~~~l~~H~--~~V~~v 61 (293)
T d1p22a2 20 CLQYDDQKIVSGLRD---------------------------------NTIKIWDKNT-L--ECKRILTGHT--GSVLCL 61 (293)
T ss_dssp EEECCSSEEEEEESS---------------------------------SCEEEEESSS-C--CEEEEECCCS--SCEEEE
T ss_pred EEEEcCCEEEEEeCC---------------------------------CeEEEEECCC-C--cEEEEEecCC--CCEeee
Confidence 478999999988876 5799999854 2 2344554432 456555
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeecc
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt 235 (958)
+ +|++.|+... ....|.++++..+......
T Consensus 62 ~--~~~~~l~s~s---------~D~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 62 Q--YDERVIITGS---------SDSTVRVWDVNTGEMLNTL 91 (293)
T ss_dssp E--CCSSEEEEEE---------TTSCEEEEESSSCCEEEEE
T ss_pred e--cccceeeccc---------ccccccccccccccccccc
Confidence 5 4788777644 2557888888887665443
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.4e-06 Score=88.85 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=43.0
Q ss_pred CcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEec
Q 002164 712 GFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (958)
Q Consensus 712 G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (958)
++.|+. .+.+|+|.+. ..+....|..+++.. . ...+++.++||||||.+|+.+|.+.|+++..++.+.
T Consensus 49 ~~~v~~---~d~~g~~~~~----~~~~~a~~~~~~~~~---~--~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 49 SIPTYG---LQCTRAAPLD----SIHSLAAYYIDCIRQ---V--QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp SSCEEE---ECCCTTSCCS----CHHHHHHHHHHHHHH---H--CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCeEEE---EeCCCCCCCC----CHHHHHHHHHHHHHH---h--cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 788888 4555766653 234445555444433 2 233689999999999999999999998877766544
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=2.4e-06 Score=74.02 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=63.7
Q ss_pred EeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHHHCCcEEEEcCCCCCC
Q 002164 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (958)
Q Consensus 645 ~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~vl~~~~~~~~ 724 (958)
-..+|.+++....- + -|.||++||.. ..|. ...+++|.|++ .|.+
T Consensus 6 ~~~~G~~l~y~~~G--------~--G~pvlllHG~~--------------~~w~--------~~L~~~yrvi~---~Dlp 50 (122)
T d2dsta1 6 LHLYGLNLVFDRVG--------K--GPPVLLVAEEA--------------SRWP--------EALPEGYAFYL---LDLP 50 (122)
T ss_dssp EEETTEEEEEEEEC--------C--SSEEEEESSSG--------------GGCC--------SCCCTTSEEEE---ECCT
T ss_pred EEECCEEEEEEEEc--------C--CCcEEEEeccc--------------cccc--------ccccCCeEEEE---Eecc
Confidence 33478888766641 1 46788899831 0111 11357999999 6667
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002164 725 GEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (958)
Q Consensus 725 G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (958)
|+|.+..+....+...+|+.+.++.+ +-++..|+||||||.+++.+++..+.
T Consensus 51 G~G~S~~p~~s~~~~a~~i~~ll~~L------~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 51 GYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp TSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccCCCCCcccccchhHHHHHHHHHHh------CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 88888655433445555555444432 33588999999999999999997643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.001 Score=66.49 Aligned_cols=180 Identities=14% Similarity=-0.013 Sum_probs=114.1
Q ss_pred CceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhh
Q 002164 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (958)
Q Consensus 218 ~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (958)
...|..+++++.+...+...... +..+.|.+..+.|+++- .
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~-----~~~id~d~~~~~lYw~D---------------------~------------- 49 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSD---------------------L------------- 49 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEE---------------------T-------------
T ss_pred CCeEEEEECCCCcceeeeCCCCc-----eEEEEEEeCCCEEEEEE---------------------C-------------
Confidence 44699999999887777543332 44677888888888761 0
Q ss_pred hccCchhhhHHHHhhcceEEEEEcCC-----e-eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEE
Q 002164 298 LLKDEYDEDLFDYYATTQLVLVSLDG-----T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (958)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~g-----~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l 370 (958)
....|+..+++| . ...+... .....+++.+-++.|+++... .+.|.+
T Consensus 50 --------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v 103 (266)
T d1ijqa1 50 --------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (266)
T ss_dssp --------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred --------------CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEe
Confidence 123466666632 1 2223333 445566777778889887533 348999
Q ss_pred EeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceE
Q 002164 371 WTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI 450 (958)
Q Consensus 371 ~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (958)
.+++|...+.+..... ..+..++..|....+ ||++. +....|++.+. +|...+.
T Consensus 104 ~~~~g~~~~~~~~~~~------------~~P~~l~vd~~~g~l-y~~~~----------~~~~~I~r~~~---dGs~~~~ 157 (266)
T d1ijqa1 104 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGFM-YWTDW----------GTPAKIKKGGL---NGVDIYS 157 (266)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTEE-EEEEC----------SSSCEEEEEET---TSCCEEE
T ss_pred EecCCceEEEEEcCCC------------CCcceEEEEcccCeE-EEecc----------CCCcceeEecc---CCCceec
Confidence 9999877655443211 234577888865554 44442 23456888885 7777776
Q ss_pred EEeec-cccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 451 LHKLD-LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 451 l~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.... ....++++.+.+++|++..... ..|+.+++++.
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~---~~I~~~~~dG~ 196 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKL---HSISSIDVNGG 196 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTSC
T ss_pred ccccccceeeEEEeeccccEEEEecCCc---CEEEEEECCCC
Confidence 65432 3346788999999999884332 47999999885
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.002 Score=64.26 Aligned_cols=224 Identities=10% Similarity=0.031 Sum_probs=133.1
Q ss_pred ceEEEEEc-CCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCce----EEEeccCCcc
Q 002164 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLA 387 (958)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~----~~~l~~~~~~ 387 (958)
..|..+++ +.+...+..+ .....++|.+..++|+++... .+.|+..++++.. .+.+....
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~------------~~~I~~~~l~~~~~~~~~~~~~~~~-- 75 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRD-- 75 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSS--
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC------------CCEEEEEEecCCCCCcceEEEEeCC--
Confidence 45888998 5565666555 566678888999999887532 2367777776422 12221111
Q ss_pred ccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecC
Q 002164 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDD 466 (958)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spD 466 (958)
...+.++++.+-++.|++. + ...+.|.+.++ +|...+.+... ......++..|.
T Consensus 76 ----------~~~p~glAvD~~~~~lY~~-d-----------~~~~~I~v~~~---~g~~~~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 76 ----------IQAPDGLAVDWIHSNIYWT-D-----------SVLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp ----------CSCCCEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSSSEEEEEECTTCCEEEEEEETT
T ss_pred ----------CCCcceEEEeeccceEEEE-e-----------cCCCEEEeEec---CCceEEEEEcCCCCCcceEEEEcc
Confidence 0234567888778877663 2 23457888885 77665555433 234566788888
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccCCCC
Q 002164 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (958)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (958)
...|+++..... .+|++.++++. ....+.........+ +++.+.++.|+|...
T Consensus 131 ~g~ly~~~~~~~--~~I~r~~~dGs--~~~~l~~~~~~~p~g------l~iD~~~~~lYw~d~----------------- 183 (266)
T d1ijqa1 131 HGFMYWTDWGTP--AKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVDS----------------- 183 (266)
T ss_dssp TTEEEEEECSSS--CEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEET-----------------
T ss_pred cCeEEEeccCCC--cceeEeccCCC--ceecccccccceeeE------EEeeccccEEEEecC-----------------
Confidence 888888754332 57999999985 333343222111111 667777888877641
Q ss_pred CCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002164 547 PEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (958)
Q Consensus 547 ~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~ 620 (958)
....|...++++...+.+...... ......++.+++.++++.. ....|++++..+|+
T Consensus 184 ---~~~~I~~~~~dG~~~~~~~~~~~~-----------~~~p~~lav~~~~ly~td~---~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 184 ---KLHSISSIDVNGGNRKTILEDEKR-----------LAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 240 (266)
T ss_dssp ---TTTEEEEEETTSCSCEEEEECTTT-----------TSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred ---CcCEEEEEECCCCCEEEEEeCCCc-----------ccccEEEEEECCEEEEEEC---CCCeEEEEECCCCc
Confidence 123688999987766665543321 0011245566777776543 23578888877765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=0.0011 Score=66.06 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=130.8
Q ss_pred cceEEEEEcCC-eeee------cCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccC
Q 002164 313 TTQLVLVSLDG-TVKE------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (958)
Q Consensus 313 ~~~l~~~~~~g-~~~~------l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~ 384 (958)
...|..+++++ .... +..+ ..+..+++.+..++|+++... .+.|+..+++++..+.+...
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------~~~I~~~~l~g~~~~~v~~~ 76 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQ 76 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECT
T ss_pred CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------------CCeEEEEEcccCCcEEEEEe
Confidence 35677787744 2221 1111 334456777778888876533 34788889987766655432
Q ss_pred CccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceee
Q 002164 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISW 463 (958)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~ 463 (958)
.. ..+..+++..-+..|++. + .....|.+.++ +|...+.+.... .....++.
T Consensus 77 ~~------------~~p~~iAvD~~~~~lY~~-d-----------~~~~~I~~~~~---dg~~~~~l~~~~l~~p~~l~v 129 (263)
T d1npea_ 77 DL------------GSPEGIALDHLGRTIFWT-D-----------SQLDRIEVAKM---DGTQRRVLFDTGLVNPRGIVT 129 (263)
T ss_dssp TC------------CCEEEEEEETTTTEEEEE-E-----------TTTTEEEEEET---TSCSCEEEECSSCSSEEEEEE
T ss_pred cc------------ccccEEEEeccCCeEEEe-c-----------cCCCEEEEEec---CCceEEEEecccccCCcEEEE
Confidence 11 123466776666666653 2 23457888885 666666664332 34567888
Q ss_pred ecCCceEEEEEeccccceEEEEEcCCCCCCCcEEEeccCCccccCCCCCCceEeccCCceEEEEeeeccCCCcEEEEccC
Q 002164 464 CDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGN 543 (958)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~ 543 (958)
.|....|+++..... ...|+++++++. ....+.........+ +++.+.++.|+|...
T Consensus 130 dp~~g~ly~t~~~~~-~~~I~r~~~dG~--~~~~i~~~~~~~P~g------laiD~~~~~lYw~d~-------------- 186 (263)
T d1npea_ 130 DPVRGNLYWTDWNRD-NPKIETSHMDGT--NRRILAQDNLGLPNG------LTFDAFSSQLCWVDA-------------- 186 (263)
T ss_dssp ETTTTEEEEEECCSS-SCEEEEEETTSC--CCEEEECTTCSCEEE------EEEETTTTEEEEEET--------------
T ss_pred ecccCcEEEeecCCC-CcEEEEecCCCC--Cceeeeeecccccce------EEEeecCcEEEEEeC--------------
Confidence 999888888764332 357999999885 333333221111111 556677777777641
Q ss_pred CCCCCCCCCeEEEEECCCCceEEEecCCcccccceeEeecCCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002164 544 GATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (958)
Q Consensus 544 ~~~~~~~~~~L~~~dl~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~~~~~d~~~g~~~~ 623 (958)
....|...|++++..+.+...... ...++.+++.++++... ...|++++..+|+...
T Consensus 187 ------~~~~I~~~~~~g~~~~~v~~~~~~--------------P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 187 ------GTHRAECLNPAQPGRRKVLEGLQY--------------PFAVTSYGKNLYYTDWK---TNSVIAMDLAISKEMD 243 (263)
T ss_dssp ------TTTEEEEEETTEEEEEEEEECCCS--------------EEEEEEETTEEEEEETT---TTEEEEEETTTTEEEE
T ss_pred ------CCCEEEEEECCCCCeEEEECCCCC--------------cEEEEEECCEEEEEECC---CCEEEEEECCCCccce
Confidence 123588888877666555433221 12344456666665543 3458888877766443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=0.0037 Score=62.05 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=62.2
Q ss_pred ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCC
Q 002164 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (958)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~ 411 (958)
.....++++++|+.++ .... ...+..++..+.......... ...+..++++++|+
T Consensus 98 ~~p~~iavd~~g~i~v-~d~~------------~~~~~~~~~~~~~~~~~~~~~------------~~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYV-ADRG------------NNRVVKLAAGSKTQTVLPFTG------------LNDPDGVAVDNSGN 152 (260)
T ss_dssp CSEEEEEECTTCCEEE-EEGG------------GTEEEEECTTCSSCEECCCCS------------CCSCCEEEECTTCC
T ss_pred eecccccccccceeEe-eccc------------cccccccccccceeeeeeecc------------cCCcceeeecCCCC
Confidence 4456778899997543 3222 125666666554332221110 02346788999987
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-ccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+++ ++ .....|+.++. ++.....+... -.....+++.++|+ |+++ +... .+|++++.++
T Consensus 153 -~~v-~~-----------~~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vs-d~~~--~~i~~~~~~~ 212 (260)
T d1rwia_ 153 -VYV-TD-----------TDNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGT-VYVT-EHNT--NQVVKLLAGS 212 (260)
T ss_dssp -EEE-EE-----------GGGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCC-EEEE-ETTT--TEEEEECTTC
T ss_pred -Eee-ec-----------ccccccccccc---ccceeeeeeccccCCCccceeeeeee-eeee-ecCC--CEEEEEeCCC
Confidence 333 22 23456888874 54443333212 22234578889986 4444 3333 4688888776
Q ss_pred C
Q 002164 491 K 491 (958)
Q Consensus 491 ~ 491 (958)
.
T Consensus 213 ~ 213 (260)
T d1rwia_ 213 T 213 (260)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.71 E-value=0.0035 Score=62.22 Aligned_cols=200 Identities=10% Similarity=0.030 Sum_probs=122.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002164 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (958)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (958)
.+....+.+-.++|+++. .....|++.+++++....+....... ...++...-++.|+++..
T Consensus 37 ~~~~ld~D~~~~~iywsd--------~~~~~I~~~~l~g~~~~~v~~~~~~~----p~~iAvD~~~~~lY~~d~------ 98 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTD--------ISEPSIGRASLHGGEPTTIIRQDLGS----PEGIALDHLGRTIFWTDS------ 98 (263)
T ss_dssp EEEEEEEETTTTEEEEEE--------TTTTEEEEEESSSCCCEEEECTTCCC----EEEEEEETTTTEEEEEET------
T ss_pred cEEEEEEEeCCCEEEEEE--------CCCCeEEEEEcccCCcEEEEEecccc----ccEEEEeccCCeEEEecc------
Confidence 344566777788887753 23568999999988776664332111 345555555667776610
Q ss_pred CCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCe-eeec-CCC-ccccccccCCCCcEE
Q 002164 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEI-GPP-AVYTSLDPSPDEKYI 346 (958)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~l-~~~-~~~~~~~~SpDGk~l 346 (958)
....|.+.+++|. .+.+ ... .....+++.|.+.+|
T Consensus 99 ------------------------------------------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~l 136 (263)
T d1npea_ 99 ------------------------------------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (263)
T ss_dssp ------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred ------------------------------------------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcE
Confidence 2345788888553 3333 333 556778899988888
Q ss_pred EEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEeccCCCcc
Q 002164 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (958)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 426 (958)
+++.... ....|+..+++|...+.+..... ..+.++++.+.+++|++. +
T Consensus 137 y~t~~~~----------~~~~I~r~~~dG~~~~~i~~~~~------------~~P~glaiD~~~~~lYw~-d-------- 185 (263)
T d1npea_ 137 YWTDWNR----------DNPKIETSHMDGTNRRILAQDNL------------GLPNGLTFDAFSSQLCWV-D-------- 185 (263)
T ss_dssp EEEECCS----------SSCEEEEEETTSCCCEEEECTTC------------SCEEEEEEETTTTEEEEE-E--------
T ss_pred EEeecCC----------CCcEEEEecCCCCCceeeeeecc------------cccceEEEeecCcEEEEE-e--------
Confidence 8876321 12258888888876666543211 234578898888876663 2
Q ss_pred cccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCCC
Q 002164 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
...+.|..++. +|...+.+........+++. ++.+|+++.+.. ..|++++..++
T Consensus 186 ---~~~~~I~~~~~---~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~---~~I~~~~~~~g 239 (263)
T d1npea_ 186 ---AGTHRAECLNP---AQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKT---NSVIAMDLAIS 239 (263)
T ss_dssp ---TTTTEEEEEET---TEEEEEEEEECCCSEEEEEE--ETTEEEEEETTT---TEEEEEETTTT
T ss_pred ---CCCCEEEEEEC---CCCCeEEEECCCCCcEEEEE--ECCEEEEEECCC---CEEEEEECCCC
Confidence 23457888885 66665555433222223443 477888886543 46999998875
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=0.00034 Score=69.39 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEeccCC
Q 002164 758 PSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAY 794 (958)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~ 794 (958)
.++|-++|||+||.++-.++.+.+. .+.-+|+.+++.
T Consensus 79 ~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsPH 116 (279)
T d1ei9a_ 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQH 116 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCCT
T ss_pred ccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCCC
Confidence 3589999999999999999998864 588888887653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0059 Score=60.64 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=35.5
Q ss_pred eecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEE
Q 002164 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (958)
.+++||++||... ....|.+||+++++..+........ +..+ ++|+++|+..
T Consensus 20 c~~~d~~~l~sgs---------~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v--~~~~~~l~s~ 71 (293)
T d1p22a2 20 CLQYDDQKIVSGL---------RDNTIKIWDKNTLECKRILTGHTGS----VLCL--QYDERVIITG 71 (293)
T ss_dssp EEECCSSEEEEEE---------SSSCEEEEESSSCCEEEEECCCSSC----EEEE--ECCSSEEEEE
T ss_pred EEEEcCCEEEEEe---------CCCeEEEEECCCCcEEEEEecCCCC----Eeee--ecccceeecc
Confidence 4678999988754 2567888899988876655443332 4444 4578888765
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.41 E-value=0.00018 Score=73.37 Aligned_cols=109 Identities=10% Similarity=-0.128 Sum_probs=65.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (958)
.|++|++||+... ....+.......+. ..++.|+.+|.......... .........-+.+...|+
T Consensus 70 ~pt~iiiHGw~~~-------------~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~~Y~-~a~~n~~~Vg~~ia~~i~ 135 (337)
T d1rp1a2 70 KKTRFIIHGFIDK-------------GEENWLLDMCKNMFKVEEVNCICVDWKKGSQTSYT-QAANNVRVVGAQVAQMLS 135 (337)
T ss_dssp SEEEEEECCCCCT-------------TCTTHHHHHHHHHTTTCCEEEEEEECHHHHSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCC-------------CCcchHHHHHHHHHhcCCceEEEEeeccccCcchH-HHHHHHHHHHHHHHHHHH
Confidence 6999999995311 11111122222333 45699999666211100000 000112233456677788
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
+|.++..+++++|.|+|||+||.+|..+..+. ..+..++...|.
T Consensus 136 ~l~~~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 136 MLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp HHHHHHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred HHHHhcCCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 87777668899999999999999998766655 567777777664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.017 Score=56.95 Aligned_cols=132 Identities=8% Similarity=-0.051 Sum_probs=71.9
Q ss_pred ceEEEEEcCC-eeeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 314 TQLVLVSLDG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 314 ~~l~~~~~~g-~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
.+++.++..+ ........ .....++++|+|+ ++++... ...+..++.+++....+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~~---- 181 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI---- 181 (260)
T ss_dssp TEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSSC----
T ss_pred ccccccccccceeeeeeecccCCcceeeecCCCC-Eeeeccc------------cccccccccccceeeeeecccc----
Confidence 3466666633 22222211 4456778899998 4444322 2378888888765444322111
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeec-cccCceeeecCCce
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLA 469 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~-~~~~~~~~spDg~~ 469 (958)
..+..+++++||+ |++ ++ ...+.|+.++. ++.....+.... .....+++++||.
T Consensus 182 --------~~p~gi~~d~~g~-l~v-sd-----------~~~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~- 236 (260)
T d1rwia_ 182 --------TAPWGIAVDEAGT-VYV-TE-----------HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT- 236 (260)
T ss_dssp --------CSEEEEEECTTCC-EEE-EE-----------TTTTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCC-
T ss_pred --------CCCccceeeeeee-eee-ee-----------cCCCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCC-
Confidence 2345788999986 333 22 23456777763 444433332222 2334688899985
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002164 470 LVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 470 l~~~~~~~~~~~~l~~~~~~~ 490 (958)
|+++ +... .+|++++..+
T Consensus 237 l~va-d~~~--~rI~~i~~~~ 254 (260)
T d1rwia_ 237 VYVA-DRGN--DRVVKLTSLE 254 (260)
T ss_dssp EEEE-EGGG--TEEEEECCCG
T ss_pred EEEE-ECCC--CEEEEEeCCC
Confidence 5444 3333 4788887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.23 E-value=0.025 Score=56.35 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=70.4
Q ss_pred eEEEEEcCCee-eecCC--C-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 315 QLVLVSLDGTV-KEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 315 ~l~~~~~~g~~-~~l~~--~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
++++++.+|+. ..+.. . .....+++.++|+ |+++... ...|++++.+|+....+... ..
T Consensus 136 ~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~------------~~~V~~~d~~G~~~~~~g~~-g~--- 198 (279)
T d1q7fa_ 136 RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGE-GI--- 198 (279)
T ss_dssp EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCT-TT---
T ss_pred eeeEeccCCceeecccccccccccceeeecccee-EEeeecc------------ccceeeeecCCceeeeeccc-cc---
Confidence 45666664432 22211 1 3445667888886 4444322 23789999988766655321 11
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEee-c-cccCceeeecCCc
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-D-LRYGGISWCDDSL 468 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~-~~~~~~~~spDg~ 468 (958)
...+..+++.++|+ |++. +. .....|.+++. +|.-.+.+... . .....++..|||+
T Consensus 199 -------~~~P~giavD~~G~-i~Va-d~----------~~~~~v~~f~~---~G~~~~~~~~~~~~~~p~~vav~~dG~ 256 (279)
T d1q7fa_ 199 -------TNYPIGVGINSNGE-ILIA-DN----------HNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDGS 256 (279)
T ss_dssp -------SCSEEEEEECTTCC-EEEE-EC----------SSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred -------ccCCcccccccCCe-EEEE-EC----------CCCcEEEEECC---CCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence 12356789999997 4442 21 12335777763 55433444222 1 1345678899996
Q ss_pred eEEEEEeccccceEEEEEc
Q 002164 469 ALVYESWYKTRRTRTWVIS 487 (958)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~~ 487 (958)
|+.+ +.+ +..++|++.
T Consensus 257 -l~V~-~~n-~~v~~fr~~ 272 (279)
T d1q7fa_ 257 -VVLA-SKD-YRLYIYRYV 272 (279)
T ss_dssp -EEEE-ETT-TEEEEEECS
T ss_pred -EEEE-eCC-CeEEEEEee
Confidence 4443 333 335566543
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.21 E-value=0.00047 Score=69.99 Aligned_cols=109 Identities=11% Similarity=-0.122 Sum_probs=67.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCCCCCcCcHHHHHHH-HCCcEEEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHH
Q 002164 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAV 747 (958)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~vl~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av 747 (958)
.|++|++||+.. +....+.......+. ...+.|+.+|... +-..... ........-+.+...|
T Consensus 70 ~pt~iiiHG~~~-------------~~~~~~~~~~~~a~l~~~d~NVi~VDW~~--~a~~~Y~~a~~n~~~Vg~~ia~~i 134 (338)
T d1bu8a2 70 RKTRFIVHGFID-------------KGEDGWLLDMCKKMFQVEKVNCICVDWRR--GSRTEYTQASYNTRVVGAEIAFLV 134 (338)
T ss_dssp SEEEEEECCSCC-------------TTCTTHHHHHHHHHHTTCCEEEEEEECHH--HHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCcccC-------------CCCcccHHHHHHHHHhcCCceEEEEechh--hcccchHHHHHhHHHHHHHHHHHH
Confidence 699999999521 111112222233344 4569999865521 1000000 0011123344455677
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEeccC
Q 002164 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (958)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (958)
++|.....++++++.++|||+||.+|..+..+.+.++..++...|.
T Consensus 135 ~~l~~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 135 QVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp HHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHhcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 7776665678999999999999999999998877778888777765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.20 E-value=0.0033 Score=64.95 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002164 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (958)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (958)
+||++|+. . ++.+..|-++|+++-+..+++..+.... +..++-.++++..++........+.
T Consensus 97 yDGrylFV-N-------Dkan~RVAvIdl~~fkt~kIi~iPn~~~---~HG~r~~~~p~T~YV~~~~e~~vP~------- 158 (459)
T d1fwxa2 97 YDGRFLFM-N-------DKANTRVARVRCDVMKCDAILEIPNAKG---IHGLRPQKWPRSNYVFCNGEDETPL------- 158 (459)
T ss_dssp EEEEEEEE-E-------ETTTTEEEEEETTTTEEEEEEECSSCCS---EEEEEECCSSBCSEEEEEECSCEES-------
T ss_pred cceeEEEE-E-------cCCCceEEEEECcceeeeEEEecCCCCC---CceeecccCCCeEEEEccCcccccc-------
Confidence 48987655 3 2358899999999999888776665321 3455566666554443211111100
Q ss_pred CCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCee-eecCCCccccccccCCCCcEEEEEee
Q 002164 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSI 351 (958)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDGk~l~~~~~ 351 (958)
.+++... .+... ....+..+|. +.+. .++.-++.....++|||||++++++.
T Consensus 159 -----pndg~~l----------~d~~~-------y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 159 -----VNDGTNM----------EDVAN-------YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp -----SCSSSST----------TCGG--------EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred -----CCCCccc----------cchhh-------cceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence 0000000 00000 2234567777 5532 33333345668899999999999874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.09 E-value=0.03 Score=55.74 Aligned_cols=133 Identities=7% Similarity=0.058 Sum_probs=72.8
Q ss_pred ceEEEEEcCCe-eeecCCC--ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccC
Q 002164 314 TQLVLVSLDGT-VKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (958)
Q Consensus 314 ~~l~~~~~~g~-~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~ 390 (958)
..|..++.+|. .+.+... ......+..++|+.++... . ...+.+++.+++..+.+......
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~-~------------~~~~~~~~~~g~~~~~~g~~~~~--- 156 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC-K------------VMRVIIFDQNGNVLHKFGCSKHL--- 156 (279)
T ss_dssp CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEET-T------------TTEEEEECTTSCEEEEEECTTTC---
T ss_pred cccccccccccceeecCCCcccccceeccccCCcEEEEee-c------------cceeeEeccCCceeecccccccc---
Confidence 34666666553 3333222 3445677888887555443 1 23678888887665554321110
Q ss_pred cccccccccCcceeeeecCCCCceEEEEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccc---cCceeeecCC
Q 002164 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDS 467 (958)
Q Consensus 391 p~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg 467 (958)
.....+.+.++|. +++ ++ .....|++++. +|.....+. ..+. ...+++.++|
T Consensus 157 --------~~~~~i~~d~~g~-i~v-~d-----------~~~~~V~~~d~---~G~~~~~~g-~~g~~~~P~giavD~~G 211 (279)
T d1q7fa_ 157 --------EFPNGVVVNDKQE-IFI-SD-----------NRAHCVKVFNY---EGQYLRQIG-GEGITNYPIGVGINSNG 211 (279)
T ss_dssp --------SSEEEEEECSSSE-EEE-EE-----------GGGTEEEEEET---TCCEEEEES-CTTTSCSEEEEEECTTC
T ss_pred --------cccceeeecccee-EEe-ee-----------ccccceeeeec---CCceeeeec-ccccccCCcccccccCC
Confidence 2335677788875 332 22 23457888884 554443331 1222 3457899999
Q ss_pred ceEEEEEeccccceEEEEEcCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+ |+++...+. .+|.+++.++
T Consensus 212 ~-i~Vad~~~~--~~v~~f~~~G 231 (279)
T d1q7fa_ 212 E-ILIADNHNN--FNLTIFTQDG 231 (279)
T ss_dssp C-EEEEECSSS--CEEEEECTTS
T ss_pred e-EEEEECCCC--cEEEEECCCC
Confidence 7 554433332 4577788665
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.57 E-value=0.021 Score=58.80 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEEEec
Q 002164 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (958)
Q Consensus 341 pDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~~~~ 420 (958)
+|||+|++.... ..+|.++|++.-+..++...|.. .+...+..++++++.++.....
T Consensus 97 yDGrylFVNDka------------n~RVAvIdl~~fkt~kIi~iPn~-----------~~~HG~r~~~~p~T~YV~~~~e 153 (459)
T d1fwxa2 97 YDGRFLFMNDKA------------NTRVARVRCDVMKCDAILEIPNA-----------KGIHGLRPQKWPRSNYVFCNGE 153 (459)
T ss_dssp EEEEEEEEEETT------------TTEEEEEETTTTEEEEEEECSSC-----------CSEEEEEECCSSBCSEEEEEEC
T ss_pred cceeEEEEEcCC------------CceEEEEECcceeeeEEEecCCC-----------CCCceeecccCCCeEEEEccCc
Confidence 489999888744 34899999998888777766543 3445667777888877764432
Q ss_pred -------cCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEE
Q 002164 421 -------DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (958)
Q Consensus 421 -------~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (958)
+|............+..+|. +..+...-...........+++||+++++++
T Consensus 154 ~~vP~pndg~~l~d~~~y~~~~t~ID~---~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 154 DETPLVNDGTNMEDVANYVNVFTAVDA---DKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp SCEESSCSSSSTTCGG-EEEEEEEEET---TTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred cccccCCCCccccchhhcceEEEEEec---CCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 11111000011223456774 3322222223345667899999999988876
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.038 Score=59.43 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=84.6
Q ss_pred EEeCCCeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCc---HHHHHHHHCCcEEEEcCC
Q 002164 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILGGPT 720 (958)
Q Consensus 644 ~~~~dg~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~vl~~~~ 720 (958)
++..++..+.-|++.... ++. ..|++|++-|||.++.-.......+|.....-+. .-.-.|.+..- +|.+|.
T Consensus 26 l~~~~~~~lffw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~an-llfIDq 100 (452)
T d1ivya_ 26 LKSSGSKHLHYWFVESQK-DPE---NSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIAN-VLYLES 100 (452)
T ss_dssp EECSTTEEEEEEEECCSS-CGG---GSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSE-EEEECC
T ss_pred eecCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcccC-EEEEec
Confidence 455677888888775432 222 3799999999998876554444444432221110 00113445533 444343
Q ss_pred CCCCCCCCcccc--hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCC-ceeEEEEeccC
Q 002164 721 TPIIGEGDEEAN--DRFVEQLVACAEAAV-EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APH-LFCCGIARSGA 793 (958)
Q Consensus 721 ~~~~G~G~~~~~--~~~~~~~~~D~~~av-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~-~~~a~v~~~~~ 793 (958)
.-..|+...... ..-......|+.+++ +|+...+.....++.|+|.||||..+-.+|.. .+. .++++++.+|.
T Consensus 101 PvGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~ 180 (452)
T d1ivya_ 101 PAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp STTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCc
Confidence 223343322111 111234455655555 55555555556789999999999998888764 222 48999998887
Q ss_pred CC
Q 002164 794 YN 795 (958)
Q Consensus 794 ~~ 795 (958)
.+
T Consensus 181 ~d 182 (452)
T d1ivya_ 181 SS 182 (452)
T ss_dssp SB
T ss_pred cC
Confidence 54
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.23 E-value=1 Score=40.62 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=88.6
Q ss_pred CceeeeccCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcC-CCceeeccCCCCccccccccceEEecCC
Q 002164 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (958)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~-~g~~~~lt~~~~~~~~~~~~~~~wspDG 255 (958)
++.+.|+.-|-. ....|..+ =..|.|.++ ...+.+...||+.++. -|+..++....- +.-+.-.-|+
T Consensus 46 ~~~vkLtkePI~-~~~~Pk~~--ldfi~f~RD---V~kGkE~Hai~~~Nlk~~GEE~~i~spk~------vRI~S~~ydd 113 (313)
T d2hu7a1 46 GETVKLNREPIN-SVLDPHYG--VGRVILVRD---VSKGAEQHALFKVNTSRPGEEQRLEAVKP------MRILSGVDTG 113 (313)
T ss_dssp SSCEECCSSCCS-EECEECTT--BSEEEEEEE---CSTTSCCEEEEEEETTSTTCEEECTTSCS------BEEEEEEECS
T ss_pred CEEEEEeccccc-CcCCCccC--cceEEEEee---hhcCcceeeEEEEccCCCCeeeEecCCce------EEEEEeeecC
Confidence 566777653311 33444433 358899887 5567778899999987 367777744221 3344455788
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEcCCeeeecCC---Cc
Q 002164 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP---PA 332 (958)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~l~~---~~ 332 (958)
+.++|+... + ....||+++ +|+.+.|.. .+
T Consensus 114 k~vvF~Gas--------------------e--------------------------d~~~LYvie-gGklrkL~~vPpFs 146 (313)
T d2hu7a1 114 EAVVFTGAT--------------------E--------------------------DRVALYALD-GGGLRELARLPGFG 146 (313)
T ss_dssp SCEEEEEEC--------------------S--------------------------SCEEEEEEE-TTEEEEEEEESSCE
T ss_pred ceEEEeccc--------------------C--------------------------CceEEEEEe-CCceeeeccCCCcc
Confidence 888887211 0 123466655 776666643 23
Q ss_pred cccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcceeeeecCCCC
Q 002164 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (958)
Q Consensus 333 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~ 412 (958)
-++++ .|++|+-..--.+ .+..+++-|+..+..+.++...+ ....+.++++.+-
T Consensus 147 FVtDI----~~d~I~G~g~~~g---------~~~sfF~adl~SG~lri~tpkeG-------------S~~~ay~~~gnKV 200 (313)
T d2hu7a1 147 FVSDI----RGDLIAGLGFFGG---------GRVSLFTSNLSSGGLRVFDSGEG-------------SFSSASISPGMKV 200 (313)
T ss_dssp EEEEE----ETTEEEEEEEEET---------TEEEEEEEETTTEEEEEECCSSE-------------EEEEEEECTTSCE
T ss_pred eEEec----cCCeEEEEeeecC---------CcceEEEEecccCCEEEecCCCC-------------cccceeEccCcee
Confidence 33333 4777765543222 23367888888888888776542 2344556676654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.71 E-value=3.1 Score=43.50 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred eeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCceEEEeccCCccccCcccccccccCcce
Q 002164 325 VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRS 403 (958)
Q Consensus 325 ~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (958)
.+.+..+ .....++|.|||+.++... ..++|++++.+++..+.+...+...... .-..+.-+
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter-------------~~G~i~~v~~~~g~~~~i~~~~~~~~~~----~ge~GLLg 81 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTER-------------ATGKILRVNPESGSVKTVFQVPEIVNDA----DGQNGLLG 81 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEET-------------TTCEEEEECTTTCCEEEEEECTTCCCCT----TSSCSEEE
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEe-------------cCCEEEEEECCCCcEeecccCCcccccc----CCCCceee
Confidence 3334433 5567889999998665443 1348999988877777766543221100 11234567
Q ss_pred eeeecC
Q 002164 404 INWRSD 409 (958)
Q Consensus 404 ~~~spD 409 (958)
+++.||
T Consensus 82 ia~~Pd 87 (450)
T d1crua_ 82 FAFHPD 87 (450)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 899986
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.67 E-value=1.3 Score=44.42 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=34.0
Q ss_pred cceEEEEEcCCeeeecCCC-ccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccC
Q 002164 313 TTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (958)
Q Consensus 313 ~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~ 375 (958)
.+.++.++ .++.+.+..+ .....+++|||++.|++.... ..+|++|++++
T Consensus 187 ~g~v~~~~-~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~------------~~~i~~y~~~~ 237 (340)
T d1v04a_ 187 WSFVTYYS-PNDVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYEKHA 237 (340)
T ss_dssp CEEEEEEC-SSCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECT
T ss_pred ceeEEEEc-CCceEEEcCCCCccceeEECCCCCEEEEEeCC------------CCeEEEEEeCC
Confidence 34455554 3444444444 556788999999999988754 34888888874
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.62 E-value=0.051 Score=56.02 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=29.3
Q ss_pred CcEEEEEeChHHHHHHHHHHhCC-------------------------CceeEEEEeccCCC
Q 002164 759 SKIAVGGHSYGAFMTANLLAHAP-------------------------HLFCCGIARSGAYN 795 (958)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~p-------------------------~~~~a~v~~~~~~~ 795 (958)
+||-|+||||||..+-+++...| +.++.+..++.+..
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTTIsTPH~ 166 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTTIATPHD 166 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCTT
T ss_pred CceeEeecccccHHHHHHHHHhccccccccccccccccccccccccCCcceEEEEeccCCCC
Confidence 58999999999999988886532 35888888886544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.18 E-value=5.3 Score=38.33 Aligned_cols=143 Identities=8% Similarity=0.023 Sum_probs=72.0
Q ss_pred eEEEEEc-CC-eeeecCCCccccccccCCCCcEEEEEeecCCccccccCCCCCceeEEEeccCc-eEEEeccCCccccCc
Q 002164 315 QLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIP 391 (958)
Q Consensus 315 ~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~~~-~~~~l~~~~~~~~~p 391 (958)
.|-++|+ +. +.+...-...+..+.|- +-+.|+++.. ..+|-|++++. .+..+.+....-
T Consensus 84 ~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lVT~--------------taVYHW~~~g~s~P~k~fdR~~~L--- 145 (327)
T d1utca2 84 TLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTD--------------NAVYHWSMEGESQPVKMFDRHSSL--- 145 (327)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEES-SSSEEEEECS--------------SEEEEEESSSSCCCEEEEECCGGG---
T ss_pred eEEEEehhHhhhhceEEcCCCcEEEEec-CCCEEEEEcC--------------CceEEEcccCCCCchhhhhhcccc---
Confidence 4667787 54 33333333455667777 4456777763 38999999753 334433321110
Q ss_pred ccccccccCcceeeeecCCCCceEE-EEeccCCCcccccccCCeEEEEeCCCCCCCCceEEEeeccccCceee--ecCC-
Q 002164 392 IAFNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW--CDDS- 467 (958)
Q Consensus 392 ~~~~~~~~~~~~~~~spDG~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~--spDg- 467 (958)
++ ..+-++.-++|++++++. ....+++ + .+.+-++.. +-+..+.|..+......+.. .++.
T Consensus 146 ---~~--~QIInY~~d~~~kW~~l~GI~~~~~~-----i--~G~mQLYS~---er~~sQ~ieGhaa~F~~~~~~g~~~~~ 210 (327)
T d1utca2 146 ---AG--CQIINYRTDAKQKWLLLTGISAQQNR-----V--VGAMQLYSV---DRKVSQPIEGHAASFAQFKMEGNAEES 210 (327)
T ss_dssp ---TT--CEEEEEEECTTSCEEEEEEEEEETTE-----E--EEEEEEEET---TTTEEEEECCSEEEEEEECCTTCSSCE
T ss_pred ---cC--ceEEEEEECCCCCEEEEEeEecCCCc-----e--eEEEEEEEe---ccCcCccccceeeeeEEEEcCCCCCCc
Confidence 00 223467788999999887 2222221 1 233444443 33333444333322222211 2222
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002164 468 LALVYESWYKTRRTRTWVISPGSK 491 (958)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~~~~~~ 491 (958)
+.++|+ +++....+|.+++++..
T Consensus 211 ~lf~fa-~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 211 TLFCFA-VRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EEEEEE-EEETTEEEEEEEECSCC
T ss_pred eEEEEE-ECCCCCcEEEEEEcCCC
Confidence 234444 33344478888888763
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.39 E-value=8 Score=38.77 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=76.5
Q ss_pred eeecCCCCeEEEEEeeccc--cCCCCCceEEEEEcCCCceeeccCCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 002164 194 VTWSQDGKHLAFSIRIDAE--DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (958)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~--~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (958)
..-..|||-++|.....+. ........++++|+.+++..++........ ......++.+||+++++...
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~~g~i~v~Gg~-------- 95 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDGNGQIVVTGGN-------- 95 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECTTSCEEEECSS--------
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc-cceeEEEEecCCcEEEeecC--------
Confidence 3345688877775432211 111223457899999887654432211110 00224578899988775410
Q ss_pred CCCCCCCCceeeecCCcccccchhhhhccCchhhhHHHHhhcceEEEEEc-CCeeeecCCC---ccccccccCCCCcEEE
Q 002164 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDEKYIL 347 (958)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDGk~l~ 347 (958)
....++++|. ++.-+.+... ......+..+||+.++
T Consensus 96 ----------------------------------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v 135 (387)
T d1k3ia3 96 ----------------------------------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 135 (387)
T ss_dssp ----------------------------------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE
T ss_pred ----------------------------------------CCcceeEecCccCcccccccccccccccceeeecCCceee
Confidence 1123667787 6655555433 2234566778999877
Q ss_pred EEeecCCccccccCCCCCceeEEEeccCceEEEeccC
Q 002164 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL 384 (958)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~l~~~ 384 (958)
+...... .....++++||..++....+...
T Consensus 136 ~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~~ 165 (387)
T d1k3ia3 136 IGGSWSG-------GVFEKNGEVYSPSSKTWTSLPNA 165 (387)
T ss_dssp ECCCCCS-------SSCCCCEEEEETTTTEEEEETTS
T ss_pred ecccccc-------ccccceeeeecCCCCceeecCCC
Confidence 7653321 12345799999998887776543
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.52 E-value=0.5 Score=49.56 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=77.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcH--HHHHHHHCCcEEEEcCCCCCCCC
Q 002164 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST--SVLLWLARGFAILGGPTTPIIGE 726 (958)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~G~~vl~~~~~~~~G~ 726 (958)
+..+.-|++...+ ++.+ .|+||++-|||.++.-.+.....+|-....-+.. -.-.|.+.. .+|.++..-..|+
T Consensus 27 ~~~lfyw~~~s~~-~~~~---~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~a-nllfiD~PvGtGf 101 (421)
T d1wpxa1 27 DKHFFFWTFESRN-DPAK---DPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSNA-TVIFLDQPVNVGF 101 (421)
T ss_dssp CCEEEEEEECCSS-CTTT---SCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGSS-EEEEECCSTTSTT
T ss_pred CceEEEEEEEeCC-CCCC---CCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccccc-CEEEEecCCCCCc
Confidence 5678777764332 3333 6999999999988765554444444322111100 011233443 3444343223444
Q ss_pred CCcccch-hhHHHHHHHHHHHHHHHHHc-CCC--CCCcEEEEEeChHHHHHHHHHHh---CCC---ceeEEEEeccCCC
Q 002164 727 GDEEAND-RFVEQLVACAEAAVEEVVRR-GVA--HPSKIAVGGHSYGAFMTANLLAH---APH---LFCCGIARSGAYN 795 (958)
Q Consensus 727 G~~~~~~-~~~~~~~~D~~~av~~l~~~-~~~--d~~~i~l~G~S~GG~~a~~~a~~---~p~---~~~a~v~~~~~~~ 795 (958)
+...... .--....+|+.+++....+. +.. -..++.|+|.||||..+-.+|.+ ..+ -++++++.+|..+
T Consensus 102 Sy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 102 SYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp CBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred eecCCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 3321111 11234455666666544443 322 23579999999999988777653 222 3779999988765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.41 E-value=9.3 Score=37.83 Aligned_cols=123 Identities=10% Similarity=-0.047 Sum_probs=62.3
Q ss_pred CCCCcEEEEEeecCCccccccCCCCCceeEEEecc--CceEEEeccCCccccCcccccccccCcceeeeecCCCCceEEE
Q 002164 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (958)
Q Consensus 340 SpDGk~l~~~~~~~~~~~~~~~~~~~~~i~l~d~~--~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~spDG~~l~~~~ 417 (958)
.+||+..+++-++.. ....|.+++++ ++..+.+....... ...+.++....||. +++ +
T Consensus 107 ~~dg~~~L~vvnH~~---------~~~~ieif~~~~~~~~l~~~~~v~~~~---------~~~pNDv~~~~~g~-fy~-T 166 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPG---------SSSTVEVFKFQEEEKSLLHLKTIRHKL---------LPSVNDIVAVGPEH-FYA-T 166 (340)
T ss_dssp CTTCCEEEEEEECST---------TCCEEEEEEEETTTTEEEEEEEECCTT---------CSSEEEEEEEETTE-EEE-E
T ss_pred cCCCcEEEEEEeccC---------CCceeEEEEEeCCCCeEEEEeecCCcc---------ccCccceEEecCCC-EEE-e
Confidence 567886666665521 12255555554 44443332221110 02345778888885 344 3
Q ss_pred EeccCCCccc------ccccCCeEEEEeCCCCCCCCceEEEeeccccCceeeecCCceEEEEEeccccceEEEEEcCCC
Q 002164 418 ETQDGGDAKV------EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (958)
Q Consensus 418 ~~~~~~~~~~------~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 490 (958)
+......... .......++.++ +++.+.+...-....++++|||++.|+++..... +|+++++++
T Consensus 167 nd~~~~~~~~~~~e~~~~~~~g~v~~~~-----~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~---~i~~y~~~~ 237 (340)
T d1v04a_ 167 NDHYFIDPYLKSWEMHLGLAWSFVTYYS-----PNDVRVVAEGFDFANGINISPDGKYVYIAELLAH---KIHVYEKHA 237 (340)
T ss_dssp ESCSCCSHHHHHHHHHTTCCCEEEEEEC-----SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT---EEEEEEECT
T ss_pred cCccCcChhhhhhhHhhcCCceeEEEEc-----CCceEEEcCCCCccceeEECCCCCEEEEEeCCCC---eEEEEEeCC
Confidence 2211111000 001233455554 4455555544445678999999999888765443 466555544
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=89.25 E-value=0.27 Score=47.74 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
+.....++..+++.+++... ..+|.+.|||+||.+|..++..
T Consensus 112 ~~~~~~~i~~~v~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 112 YEQVVNDYFPVVQEQLTAHP--TYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCC--CceEEEEecccchHHHHHHHHH
Confidence 34556667777776666532 2589999999999999887763
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=89.17 E-value=12 Score=37.32 Aligned_cols=83 Identities=5% Similarity=-0.084 Sum_probs=49.4
Q ss_pred ceeEEEccCCCCCCceeeec--cCCCCCcccceeecCCCCeEEEEEeeccccCCCCCceEEEEEcCCCceeeccCCCCcc
Q 002164 164 GIGIHQLFPDGKLGQEIEIQ--GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (958)
Q Consensus 164 ~l~i~~~~~dg~~~~~~~lt--~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~ 241 (958)
.+.+||..+ +...++. ..+........++.+||+.+++- +.+...++++|..++.-..+...+..+
T Consensus 53 ~~~~yd~~t----~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~G--------g~~~~~~~~yd~~~~~w~~~~~~~~~r 120 (387)
T d1k3ia3 53 LTSSWDPST----GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG--------GNDAKKTSLYDSSSDSWIPGPDMQVAR 120 (387)
T ss_dssp EEEEECTTT----CCBCCCEEEECSCCCSSCEEEECTTSCEEEEC--------SSSTTCEEEEEGGGTEEEECCCCSSCC
T ss_pred EEEEEECCC----CcEeecCCCCCCcccceeEEEEecCCcEEEee--------cCCCcceeEecCccCcccccccccccc
Confidence 467888865 2222221 11111123445788999776652 233567899999998877775544432
Q ss_pred ccccccceEEecCCeEEEEE
Q 002164 242 LNAIFDNFVWVNNSTLLVCT 261 (958)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (958)
. ....+..+||+++++.
T Consensus 121 ~---~~~~~~~~dG~v~v~G 137 (387)
T d1k3ia3 121 G---YQSSATMSDGRVFTIG 137 (387)
T ss_dssp S---SCEEEECTTSCEEEEC
T ss_pred c---ccceeeecCCceeeec
Confidence 1 2245566899888765
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=88.06 E-value=0.35 Score=46.73 Aligned_cols=41 Identities=27% Similarity=0.237 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.....++...+..++++. ...+|.+.|||+||.+|..++..
T Consensus 105 ~~i~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 105 ISVQDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHH
Confidence 344566777777776653 22489999999999999887764
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=87.48 E-value=0.31 Score=47.41 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.....++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 117 ~~~~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 117 KLVRDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 445566777777666653 12489999999999999987764
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=87.44 E-value=0.41 Score=46.38 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
+.....++...+..+.++. ...+|.+.|||+||.+|..++..
T Consensus 111 ~~~v~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 152 (265)
T d3tgla_ 111 YGEVQNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALD 152 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHH
Confidence 3445566666666665552 23589999999999999987753
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=87.40 E-value=0.4 Score=46.58 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (958)
.....++...++.+.++.. .-+|.+.|||+||.+|..++..
T Consensus 118 ~~~~~~v~~~v~~~~~~~~--~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 118 RSVADTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CcceeeeccchHHHHHHHHHHH
Confidence 3445566666766665521 2489999999999999988874
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=86.97 E-value=0.48 Score=50.66 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=73.9
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCCCCCcCcH--HHHHHHHCCcEEEEcCCCCCCCCC
Q 002164 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST--SVLLWLARGFAILGGPTTPIIGEG 727 (958)
Q Consensus 650 ~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~G~~vl~~~~~~~~G~G 727 (958)
..+.-|++.... .+ .....|++|++-|||.++.-.+.....+|-.+..-+.. -.-.|.+. ..+|.++..-..|+.
T Consensus 49 ~~~ffw~fe~~~-~~-~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~~-an~lfIDqPvGvGfS 125 (483)
T d1ac5a_ 49 LEYFFWKFTNND-SN-GNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWISK-GDLLFIDQPTGTGFS 125 (483)
T ss_dssp CEEEEEEEECSC-SG-GGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGGT-SEEEEECCSTTSTTC
T ss_pred ceEEEEEEEecC-CC-CCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccccc-CCEEEEeCCCCcCee
Confidence 355556664322 11 11125999999999988765544444444333211100 00123333 344544443334544
Q ss_pred Ccccc----------hhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----------CC-ce
Q 002164 728 DEEAN----------DRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-----------PH-LF 784 (958)
Q Consensus 728 ~~~~~----------~~~~~~~~~D~~~av~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-----------p~-~~ 784 (958)
..... ..-......++..++. |+...+..-..++.|+|.||||..+-.+|..- +. -+
T Consensus 126 y~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inL 205 (483)
T d1ac5a_ 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205 (483)
T ss_dssp SSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEE
T ss_pred ecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccc
Confidence 32211 0112344555555444 34444544457899999999998887766531 01 37
Q ss_pred eEEEEeccCCC
Q 002164 785 CCGIARSGAYN 795 (958)
Q Consensus 785 ~a~v~~~~~~~ 795 (958)
+++++..|..+
T Consensus 206 kGi~IGNg~~d 216 (483)
T d1ac5a_ 206 KALLIGNGWID 216 (483)
T ss_dssp EEEEEEEECCC
T ss_pred eeeeecCCccC
Confidence 88887776533
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=84.19 E-value=7.2 Score=35.06 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEeccC
Q 002164 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (958)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (958)
...+.++...+....++ .-..||+|+|+|.|+.++..++..-+ +++++++++.-.
T Consensus 76 ~~G~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfGDP 134 (197)
T d1cexa_ 76 SAAIREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFGYT 134 (197)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEESCT
T ss_pred hHHHHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEeCC
Confidence 34556666666666655 33359999999999999988887542 578888887643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.02 E-value=7.9 Score=40.18 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=12.2
Q ss_pred ccceEEecCCeEEEEE
Q 002164 246 FDNFVWVNNSTLLVCT 261 (958)
Q Consensus 246 ~~~~~wspDG~~l~~~ 261 (958)
...++|.|||++++..
T Consensus 29 P~~la~~pdg~llVte 44 (450)
T d1crua_ 29 PHALLWGPDNQIWLTE 44 (450)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred ceEEEEeCCCeEEEEE
Confidence 3478999999877644
|