Citrus Sinensis ID: 002167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------
Protein Sequence
MGYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRVIRRGRASRRSL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEcccccccccccccEEEccccccccccHHHcccccccEEEcccccccEEccccHHHHccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEccccEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccccccHHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccEEccccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccEEcccccccccccEEEEEEEEcccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHHHHHHHHHHcccHHHHHHHHHHcccEEEHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccHcccHHHcEEEccccccccccccHHHHHHcccccEEEcccccccccccHHHHHHHHccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEEccccccccccHHHHHccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEEEccccccccccHHHccccccEEEEcccccccccccHHccccccEEEEcccccccccccHHHcccccEEEEEcccccccccccHHHHHccccEEEEcccccccccccHHHHcccccEEEEEEccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcccccHHHHHHccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHcHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MGYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSfqkhsslsCEIFQqisrpkmmswkedadccswdgvtcdsatghvigldlscswlhgnipsnsslfflprLRKLNLAfndfngskissgftdqfpsltlldlcscnftgsippslgnnitqlAYLDLSInsfighipssfsnlhqlrhldlqsnnfvgkipaslgnniTQLAYldlssnsfsghipssfsNLQQlcyldlddnhfvgeipaslgnniTQLAYLdlssngfsghipssFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFsnfsgsvelydfaklknlkvlslsnislsvstkltanssfpnlsaldlsacnisefpdnlrTQHQLELLdlsenqiggripswmwdIGVHTLIELDLSrnfltsidhlpwknleylhldsnslqgslpdlpphmvsfsisnnsltgeipssfcnlssiqyldlsnnslsgqipqclgnstlETLDLRMNnfqgsipqtnakgcklTYLRlsgnhlegplppsltncvklqfldvgnnnlsgqipeclgnstLQVLDMRmnnfsgslpqtFAKSCVLVSLNlngnrlkgplppslvncqylevldvgnnqiddtfPYWLDVLLELQVLILRsnrfwgpigdtktrvpfpklrimdcshnqltgvlplWYLESFKAMmhgnnnsvevgymrlpgssnyYESIFLTMKGIDLQMERILTTFATidlssnrfqRKIPEVVGKLNslkslnishnnltgcipsslrnltelesldlssnklagriptqlASLNYLSVLNlsnnqlegpipggpqfntfgndsysgnsglcgfplskscsideapepttptgfiegddasswfDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRVIRRGRASRRSL
Flexible Loop (DISEMBL)
MGYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILrsnrfwgpigdtktrvpfPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFAtidlssnrfQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMierkqsrklrrvirrgrasrrsl
Low Complexity Region (SEG)
MGYITQPYqlliclqlllFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAklknlkvlslsnislsvsTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWldvllelqvlilRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQlaslnylsvlnlsnnqlEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLrrvirrgrasrrSL
Disordered region (IsUnstruct)
**YITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSN*************VSFSIS**SLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL**********NTF********SGLCGFPL****************GFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIE*********************
Disordered Region (DISOPRED)
****TQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMM***********MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPL***************************FDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRVIRR********
Disordered Region (DISEMBL)
MGYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLR*************
Disordered Region (DISPRO)
*GYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSC*********************SWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRVIR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYITQPYQLLICLQLLLFYSQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRVIRRGRASRRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	957	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.762	0.861	0.380	1e-122
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.779	0.597	0.332	5e-87
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.791	0.604	0.320	8e-80
Q9FL28	1173	LRR receptor-like serine/	no	no	0.747	0.609	0.313	2e-78
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.829	0.666	0.313	5e-77
Q9LP24	1120	Probable leucine-rich rep	no	no	0.677	0.578	0.330	9e-73
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.582	0.533	0.331	2e-72
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.673	0.567	0.330	1e-69
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.642	0.565	0.318	8e-68
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.685	0.584	0.325	6e-65

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 295/776 (38%), Positives = 429/776 (55%), Gaps = 46/776 (5%)

Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240
           SS   L  LRHLDL + N  G+IP+SLGN ++ L  ++L  N F G IP+S  NL QL +
Sbjct: 104 SSLFKLQYLRHLDLTNCNLYGEIPSSLGN-LSHLTLVNLYFNKFVGEIPASIGNLNQLRH 162

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
           L L +N   GEIP+SLGN +++L  L+L SN   G IP S  +L+QL  L+L  NN +G+
Sbjct: 163 LILANNVLTGEIPSSLGN-LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGE 221

Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNL 360
           IP    NL+ L  L L +N+L+G +P+SI  L+ L  +    ++ SG++ +  FA L  L
Sbjct: 222 IPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPI-SFANLTKL 280

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIG 419
            +  LS+ + + ST     S F NL   D+S  + S  FP +L     LE + L ENQ  
Sbjct: 281 SIFVLSSNNFT-STFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFT 339

Query: 420 GRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSF 479
           G I                    F  +        L+ L L  N L G +P+    +++ 
Sbjct: 340 GPI-------------------EFANTSSS---TKLQDLILGRNRLHGPIPESISRLLNL 377

Query: 480 S---ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS 536
               IS+N+ TG IP +   L ++ +LDLS N+L G++P CL    L T+ L  N+F  S
Sbjct: 378 EELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR--LNTMVLSHNSF-SS 434

Query: 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN--STL 594
              T+ +   +  L L+ N  +GP+P  +     L FLD+ NN  SG IP C+ N   ++
Sbjct: 435 FENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSI 494

Query: 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
           + L++  NNFSG+LP  F+K+  LVSL+++ N+L+G  P SL+NC+ LE+++V +N+I D
Sbjct: 495 KELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKD 554

Query: 655 TFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESF 714
            FP WL+ L  L VL LRSN+F+GP+      + F  LRI+D SHN  +G LP +Y  ++
Sbjct: 555 IFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNW 614

Query: 715 KAM--MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQR 772
           K M  +    +     + R   S  YY  + +  KG+D+  ERI   F  ID S N+   
Sbjct: 615 KDMTTLTEEMDQYMTEFWRYADS--YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKING 672

Query: 773 KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 832
            IPE +G L  L+ LN+S N  T  IP  L NLT+LE+LD+S NKL+G+IP  LA+L++L
Sbjct: 673 NIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFL 732

Query: 833 SVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTT--PTGFI 890
           S +N S+N L+GP+P G QF      S+  N GL G  L   C    A  PT+  P    
Sbjct: 733 SYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLS 790

Query: 891 EGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKLRRV 946
           E ++  + F+W  A + Y  GV+ GL IG+  + +   +WF     RKQ + L  V
Sbjct: 791 EAEE--NMFNWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWFTEKFGRKQHKALTSV 843

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  323 bits (827), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 291/875 (33%), Positives = 430/875 (49%), Gaps = 129/875 (14%)

Query: 64  MMSWKED-ADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFN 122
           +  W  D  + CSW GVTCD                      N+ LF   R+  LNL   
Sbjct: 47  LRQWNSDNINYCSWTGVTCD----------------------NTGLF---RVIALNLTGL 81

Query: 123 DFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSS 182
              GS IS  F  +F +L  LDL S N  G IP +L +N+T L  L L  N   G IPS 
Sbjct: 82  GLTGS-ISPWF-GRFDNLIHLDLSSNNLVGPIPTAL-SNLTSLESLFLFSNQLTGEIPSQ 138

Query: 183 FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLD 242
             +L  +R L +  N  VG IP +LGN +  L  L L+S   +G IPS    L ++  L 
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGN-LVNLQMLALASCRLTGPIPSQLGRLVRVQSLI 197

Query: 243 LDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP 302
           L DN+  G IPA LGN  + L     + N  +G IP+    L+ L  LNL  N+  G+IP
Sbjct: 198 LQDNYLEGPIPAELGN-CSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 303 DMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV--ELYDFAKLKNL 360
                ++QL +L L  N+L G IP S+ +L NL  + LS +N +G +  E ++ ++L +L
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDL 316

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIG 419
            VL+ +++S S+   + +N++  NL  L LS   +S E P  L     L+ LDLS N + 
Sbjct: 317 -VLANNHLSGSLPKSICSNNT--NLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLA 373

Query: 420 GRIPSWMWDIGVHTLIEL-DLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478
           G IP  +++     L+EL DL                 YLH  +N+L+G+L     ++ +
Sbjct: 374 GSIPEALFE-----LVELTDL-----------------YLH--NNTLEGTLSPSISNLTN 409

Query: 479 FS---ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQ 534
                + +N+L G++P     L  ++ L L  N  SG+IPQ +GN T L+ +D+  N+F+
Sbjct: 410 LQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFE 469

Query: 535 GSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-ST 593
           G IP +  +  +L  L L  N L G LP SL NC +L  LD+ +N LSG IP   G    
Sbjct: 470 GEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query: 594 LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           L+ L +  N+  G+LP +      L  +NL+ NRL G + P   +  YL   DV NN  +
Sbjct: 530 LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFE 588

Query: 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713
           D  P  L     L  L L  N+  G I  T  ++   +L ++D S N LTG +PL  L  
Sbjct: 589 DEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR--ELSLLDMSSNALTGTIPL-QLVL 645

Query: 714 FKAMMHG--NNNSV------------EVGYMRLPGSSNYYESI-----------FLTMKG 748
            K + H   NNN +            ++G ++L  S+ + ES+            L++ G
Sbjct: 646 CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKL-SSNQFVESLPTELFNCTKLLVLSLDG 704

Query: 749 IDL-----QMERILTTFATIDLSSNRFQRKIPEVVGKLNSL------------------- 784
             L     Q    L     ++L  N+F   +P+ +GKL+ L                   
Sbjct: 705 NSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIG 764

Query: 785 ------KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 838
                  +L++S+NN TG IPS++  L++LE+LDLS N+L G +P  +  +  L  LN+S
Sbjct: 765 QLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVS 824

Query: 839 NNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSK 873
            N L G +    QF+ +  DS+ GN+GLCG PLS+
Sbjct: 825 FNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  299 bits (765), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 269/839 (32%), Positives = 397/839 (47%), Gaps = 82/839 (9%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGF 133
           C+W GVTC      +IGL+LS   L G+I                            S  
Sbjct: 61  CNWTGVTCGGR--EIIGLNLSGLGLTGSI----------------------------SPS 90

Query: 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
             +F +L  +DL S    G IP +L N  + L  L L  N   G IPS   +L  L+ L 
Sbjct: 91  IGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLK 150

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
           L  N   G IP + GN +  L  L L+S   +G IPS F  L QL  L L DN   G IP
Sbjct: 151 LGDNELNGTIPETFGN-LVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIP 209

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
           A +GN  T LA    + N  +G +P+  + L+ L  LNL  N+F G+IP    +L  + +
Sbjct: 210 AEIGN-CTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQY 268

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373
           L L  N+L G IP  + EL NL  + LS +N +G +   +F ++  L+ L L+   LS S
Sbjct: 269 LNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH-EEFWRMNQLEFLVLAKNRLSGS 327

Query: 374 TKLTANSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVH 432
              T  S+  +L  L LS   +S E P  +     L+LLDLS N + G+IP  ++ +   
Sbjct: 328 LPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVEL 387

Query: 433 TLIELD---LSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS---NNSL 486
           T + L+   L     +SI +L   NL+   L  N+L+G +P     +    I     N  
Sbjct: 388 TNLYLNNNSLEGTLSSSISNL--TNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRF 445

Query: 487 TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGC 545
           +GE+P    N + +Q +D   N LSG+IP  +G    L  L LR N   G+IP +     
Sbjct: 446 SGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCH 505

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL---------------- 589
           ++T + L+ N L G +P S      L+   + NN+L G +P+ L                
Sbjct: 506 QMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKF 565

Query: 590 --------GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQY 641
                   G+S+    D+  N F G +P    KS  L  L L  N+  G +P +      
Sbjct: 566 NGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISE 625

Query: 642 LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQ 701
           L +LD+  N +    P  L +  +L  + L +N   G I     ++P   L  +  S N+
Sbjct: 626 LSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL--LGELKLSSNK 683

Query: 702 LTGVLP--LWYLESFKAM-MHGN--NNSV--EVGYMRLPGSSNYYESIFLTMKGIDLQME 754
             G LP  ++ L +   + + GN  N S+  E+G ++   + N  E+    + G      
Sbjct: 684 FVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN---QLSGPLPSTI 740

Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKS-LNISHNNLTGCIPSSLRNLTELESLDL 813
             L+    + LS N    +IP  +G+L  L+S L++S+NN TG IPS++  L +LESLDL
Sbjct: 741 GKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDL 800

Query: 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLS 872
           S N+L G +P Q+  +  L  LNLS N LEG +    QF+ +  D++ GN+GLCG PLS
Sbjct: 801 SHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQFSRWQADAFVGNAGLCGSPLS 857

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  294 bits (753), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 259/827 (31%), Positives = 382/827 (46%), Gaps = 112/827 (13%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGF 133
           C+W G+TCDS TGHV+                                            
Sbjct: 61  CNWTGITCDS-TGHVV-------------------------------------------- 75

Query: 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
                S++LL+       G + P++ N +T L  LDL+ NSF G IP+    L +L  L 
Sbjct: 76  -----SVSLLE---KQLEGVLSPAIAN-LTYLQVLDLTSNSFTGKIPAEIGKLTELNQLI 126

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
           L  N F G IP+ +   +  + YLDL +N  SG +P        L  +  D N+  G+IP
Sbjct: 127 LYLNYFSGSIPSGIW-ELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIP 185

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
             LG ++  L     + N  +G IP S   L  L  L+L  N   GKIP  F NL  L  
Sbjct: 186 ECLG-DLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQS 244

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV--ELYDFAKLKNLKVLSLSNISLS 371
           L L  N L G IP+ I    +L ++ L  +  +G +  EL +  +L+ L++         
Sbjct: 245 LVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRI--------- 295

Query: 372 VSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPS---WMWD 428
              KLT                  S  P +L    QL  L LSEN + G I     ++  
Sbjct: 296 YKNKLT------------------SSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES 337

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLP---DLPPHMVSFSISNNS 485
           + V TL   + +  F  SI +L  +NL  L +  N++ G LP    L  ++ + S  +N 
Sbjct: 338 LEVLTLHSNNFTGEFPQSITNL--RNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNL 395

Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC 545
           LTG IPSS  N + ++ LDLS+N ++G+IP+  G   L  + +  N+F G IP       
Sbjct: 396 LTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCS 455

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNF 604
            L  L ++ N+L G L P +    KL+ L V  N+L+G IP  +GN   L +L +  N F
Sbjct: 456 NLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGF 515

Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL 664
           +G +P+  +   +L  L +  N L+GP+P  + + + L VLD+ NN+     P     L 
Sbjct: 516 TGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLE 575

Query: 665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM---MHGN 721
            L  L L+ N+F G I  +   +    L   D S N LTG +P   L S K M   ++ +
Sbjct: 576 SLTYLSLQGNKFNGSIPASLKSLSL--LNTFDISDNLLTGTIPGELLASLKNMQLYLNFS 633

Query: 722 NNSV------EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIP 775
           NN +      E+G + +    +   ++F     I   ++     F T+D S N     IP
Sbjct: 634 NNLLTGTIPKELGKLEMVQEIDLSNNLF--SGSIPRSLQACKNVF-TLDFSQNNLSGHIP 690

Query: 776 -EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 834
            EV   ++ + SLN+S N+ +G IP S  N+T L SLDLSSN L G IP  LA+L+ L  
Sbjct: 691 DEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKH 750

Query: 835 LNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCG--FPLSKSCSIDE 879
           L L++N L+G +P    F         GN+ LCG   PL K C+I +
Sbjct: 751 LKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPL-KPCTIKQ 796

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  290 bits (741), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 283/902 (31%), Positives = 409/902 (45%), Gaps = 108/902 (11%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGF 133
           C W GVTC    G V  L L    L G IP   S   L  LR+L LA N F         
Sbjct: 55  CDWVGVTC--LLGRVNSLSLPSLSLRGQIPKEIS--SLKNLRELCLAGNQF--------- 101

Query: 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
                            +G IPP + N +  L  LDLS NS  G +P   S L QL +LD
Sbjct: 102 -----------------SGKIPPEIWN-LKHLQTLDLSGNSLTGLLPRLLSELPQLLYLD 143

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
           L  N+F G +P S   ++  L+ LD+S+NS SG IP     L  L  L +  N F G+IP
Sbjct: 144 LSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIP 203

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
           + +G NI+ L      S  F+G +P   S L+ L  L+L YN     IP  F  L  LS 
Sbjct: 204 SEIG-NISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSI 262

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373
           L L   ELIG IP  +    +L  + LSF++ SG + L    +L  + +L+ S     +S
Sbjct: 263 LNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPL----ELSEIPLLTFSAERNQLS 318

Query: 374 TKLTA-NSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGV 431
             L +    +  L +L L+    S E P  +     L+ L L+ N + G IP  +   G 
Sbjct: 319 GSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPREL--CGS 376

Query: 432 HTLIELDLSRNFLT-SIDHL--PWKNLEYLHLDSNSLQGSLPD----LPPHMVSFSISNN 484
            +L  +DLS N L+ +I+ +     +L  L L +N + GS+P+    LP  +++  + +N
Sbjct: 377 GSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP--LMALDLDSN 434

Query: 485 SLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAK 543
           + TGEIP S    +++     S N L G +P  +GN ++L+ L L  N   G IP+   K
Sbjct: 435 NFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGK 494

Query: 544 GCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMN 602
              L+ L L+ N  +G +P  L +C  L  LD+G+NNL GQIP+ +   + LQ L +  N
Sbjct: 495 LTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYN 554

Query: 603 NFSGSLPQTFAKSCVLVSL------------NLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650
           N SGS+P   +     + +            +L+ NRL GP+P  L  C  L  + + NN
Sbjct: 555 NLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNN 614

Query: 651 QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWY 710
            +    P  L  L  L +L L  N   G I   K      KL+ ++ ++NQL G +P   
Sbjct: 615 HLSGEIPASLSRLTNLTILDLSGNALTGSI--PKEMGNSLKLQGLNLANNQLNGHIP--- 669

Query: 711 LESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRF 770
            ESF  +            ++L  + N  +       G        L     +DLS N  
Sbjct: 670 -ESFGLLGS---------LVKLNLTKNKLDGPVPASLG-------NLKELTHMDLSFNNL 712

Query: 771 QRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN 830
             ++   +  +  L  L I  N  TG IPS L NLT+LE LD+S N L+G IPT++  L 
Sbjct: 713 SGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLP 772

Query: 831 YLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFI 890
            L  LNL+ N L G +P             SGN  LCG  +   C              I
Sbjct: 773 NLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCK-------------I 819

Query: 891 EGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFV--RMIERKQSRKLRRVIR 948
           EG    S   W +A      G+++G +I    FV    +W +  R+ +R    ++     
Sbjct: 820 EGTKLRS--AWGIA------GLMLGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRL 871

Query: 949 RG 950
           +G
Sbjct: 872 KG 873

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  275 bits (704), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 253/766 (33%), Positives = 362/766 (47%), Gaps = 118/766 (15%)

Query: 146 CSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPA 205
            SCN  GSI         +L   +  I       P  F +L  L ++DL  N   G IP 
Sbjct: 71  VSCNSRGSI--------EELNLTNTGIEGTFQDFP--FISLSNLAYVDLSMNLLSGTIPP 120

Query: 206 SLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY 265
             GN +++L Y DLS+N  +G I  S  NL+ L  L L  N+    IP+ LGN +  +  
Sbjct: 121 QFGN-LSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGN-MESMTD 178

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           L LS N  +G IPSS  NL+ L+ L L  N   G IP    N+  ++ L L+ N+L GSI
Sbjct: 179 LALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSI 238

Query: 326 PSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
           PS++  L NL  +YL  +  +G +      ++ N++  S++N++LS   KLT +      
Sbjct: 239 PSTLGNLKNLMVLYLYENYLTGVIP----PEIGNME--SMTNLALS-QNKLTGS------ 285

Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT 445
                        P +L     L LL L +N + G IP  + +I   ++I+L+LS N LT
Sbjct: 286 ------------IPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNI--ESMIDLELSNNKLT 331

Query: 446 -----SIDHLPWKNLEYLHLDSNSLQGSLPDLPPH------MVSFSISNNSLTGEIPSSF 494
                S+ +L  KNL  L+L  N L G +P   P       M+   ++NN LTG IPSSF
Sbjct: 332 GSIPSSLGNL--KNLTILYLYENYLTGVIP---PELGNMESMIDLQLNNNKLTGSIPSSF 386

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
            NL ++ YL L  N L+G IPQ LGN  ++  LDL  N   GS+P +     KL  L L 
Sbjct: 387 GNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLR 446

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFA 613
            NHL G +PP + N                        S L  L +  NNF+G  P+T  
Sbjct: 447 VNHLSGAIPPGVANS-----------------------SHLTTLILDTNNFTGFFPETVC 483

Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL-EVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
           K   L +++L+ N L+GP+P SL +C+ L     +GN    D F  +  +  +L  +   
Sbjct: 484 KGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAF-GIYPDLNFIDFS 542

Query: 673 SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP--LWYLESFKAMMHGNNNSVEVGYM 730
            N+F G I     + P  KL  +  S+N +TG +P  +W +     +    NN     + 
Sbjct: 543 HNKFHGEISSNWEKSP--KLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNL----FG 596

Query: 731 RLPGS-SNYYESIFLTMKGIDLQME-----RILTTFATIDLSSNRFQRKIPEV------- 777
            LP +  N      L + G  L          LT   ++DLSSN F  +IP+        
Sbjct: 597 ELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKL 656

Query: 778 ----------------VGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
                           + KL  L  L++SHN L G IPS L +L  L+ LDLS N L+G 
Sbjct: 657 HDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGL 716

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLC 867
           IPT    +  L+ +++SNN+LEGP+P  P F     D+   N GLC
Sbjct: 717 IPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  275 bits (702), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 220/663 (33%), Positives = 305/663 (46%), Gaps = 106/663 (15%)

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273
           L ++DLS N FSG I   +    +L Y DL  N  VGEIP  LG+ ++ L  L L  N  
Sbjct: 120 LTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGD-LSNLDTLHLVENKL 178

Query: 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL 333
           +G IPS    L ++  + +  N   G IP  F NLT+L  L L  N L GSIPS I  L 
Sbjct: 179 NGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLP 238

Query: 334 NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC 393
           NL E+ L  +N +G +    F  LKN+ +L++    LS                      
Sbjct: 239 NLRELCLDRNNLTGKIP-SSFGNLKNVTLLNMFENQLS---------------------- 275

Query: 394 NISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453
              E P  +     L+ L L  N++ G IPS + +I                       K
Sbjct: 276 --GEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNI-----------------------K 310

Query: 454 NLEYLHLDSNSLQGSLPDLPPH------MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSN 507
            L  LHL  N L GS+P   P       M+   IS N LTG +P SF  L+++++L L +
Sbjct: 311 TLAVLHLYLNQLNGSIP---PELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 367

Query: 508 NSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT 566
           N LSG IP  + NST L  L L  NNF G +P T  +G KL  L L  NH EGP+P SL 
Sbjct: 368 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLR 427

Query: 567 NCVKLQFLDVGNNNLSGQIPECLG-NSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG 625
           +C  L  +    N+ SG I E  G   TL  +D+  NNF G L   + +S  LV+  L+ 
Sbjct: 428 DCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSN 487

Query: 626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKT 685
           N + G +PP + N   L  LD+ +N+I    P  +  +  +  L L  NR  G I  +  
Sbjct: 488 NSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKI-PSGI 546

Query: 686 RVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745
           R+    L  +D S N+ +  +P              NN   + YM               
Sbjct: 547 RL-LTNLEYLDLSSNRFSSEIPPTL-----------NNLPRLYYM--------------- 579

Query: 746 MKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL 805
                             +LS N   + IPE + KL+ L+ L++S+N L G I S  R+L
Sbjct: 580 ------------------NLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSL 621

Query: 806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSG 865
             LE LDLS N L+G+IP     +  L+ +++S+N L+GPIP    F     D++ GN  
Sbjct: 622 QNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKD 681

Query: 866 LCG 868
           LCG
Sbjct: 682 LCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  265 bits (678), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 238/721 (33%), Positives = 346/721 (47%), Gaps = 76/721 (10%)

Query: 177 GHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ 236
           G I    S L  LR L L+SN+F G IP SL    T+L  + L  NS SG +P +  NL 
Sbjct: 82  GRISDRISGLRMLRKLSLRSNSFNGTIPTSLAY-CTRLLSVFLQYNSLSGKLPPAMRNLT 140

Query: 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
            L   ++  N   GEIP  L    + L +LD+SSN FSG IPS  +NL QL  LNL YN 
Sbjct: 141 SLEVFNVAGNRLSGEIPVGLP---SSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQ 197

Query: 297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAK 356
             G+IP    NL  L +L L +N L G++PS+I    +L  +  S  N  G V    +  
Sbjct: 198 LTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSAS-ENEIGGVIPAAYGA 256

Query: 357 LKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ------LEL 410
           L  L+VLSLSN + S +      S F N ++L +     + F D +R +        L++
Sbjct: 257 LPKLEVLSLSNNNFSGTVPF---SLFCN-TSLTIVQLGFNAFSDIVRPETTANCRTGLQV 312

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLP 470
           LDL EN+I GR P W+ +I                    L  KNL+              
Sbjct: 313 LDLQENRISGRFPLWLTNI--------------------LSLKNLD-------------- 338

Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP----QCLGNSTLETL 526
                     +S N  +GEIP    NL  ++ L L+NNSL+G+IP    QC    +L+ L
Sbjct: 339 ----------VSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQC---GSLDVL 385

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
           D   N+ +G IP+       L  L L  N   G +P S+ N  +L+ L++G NNL+G  P
Sbjct: 386 DFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFP 445

Query: 587 -ECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL 645
            E +  ++L  LD+  N FSG++P + +    L  LNL+GN   G +P S+ N   L  L
Sbjct: 446 VELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTAL 505

Query: 646 DVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705
           D+    +    P  L  L  +QV+ L+ N F G + +  + +    LR ++ S N  +G 
Sbjct: 506 DLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLV--SLRYVNLSSNSFSGE 563

Query: 706 LPLWY-LESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT----MKGIDLQMERILTTF 760
           +P  +        +  ++N +        G+ +  E + L     M  I   + R L   
Sbjct: 564 IPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSR-LPRL 622

Query: 761 ATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
             +DL  N    +IP  + + +SL SL++ HN+L+G IP S   L+ L  +DLS N L G
Sbjct: 623 KVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTG 682

Query: 821 RIPTQLASLNY-LSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDE 879
            IP  LA ++  L   N+S+N L+G IP            +SGN+ LCG PL++ C    
Sbjct: 683 EIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESST 742

Query: 880 A 880
           A
Sbjct: 743 A 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  259 bits (661), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 220/690 (31%), Positives = 343/690 (49%), Gaps = 75/690 (10%)

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
           L+L ++   G++ + +G  +  L  LDLS NSFSG +PS+  N   L YLDL +N F GE
Sbjct: 81  LNLSASGLSGQLGSEIGE-LKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGE 139

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           +P   G+ +  L +L L  N  SG IP+S   L +L+ L + YNN  G IP++  N ++L
Sbjct: 140 VPDIFGS-LQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKL 198

Query: 312 SFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS--NIS 369
            +L L  N+L GS+P+S++ L NL E+++S ++  G +  +  +  K L  L LS  +  
Sbjct: 199 EYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLH-FGSSNCKKLVSLDLSFNDFQ 257

Query: 370 LSVSTKLTANSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
             V  ++   SS   L +L +  CN++   P ++    ++ ++DLS+N++ G IP  + +
Sbjct: 258 GGVPPEIGNCSS---LHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGN 314

Query: 429 IGVHTLIELDLSRNFLTSIDHLP-----WKNLEYLHLDSNSLQGSLPDLPPHMVSFS--- 480
               +L  L L+ N L     +P      K L+ L L  N L G +P     + S +   
Sbjct: 315 --CSSLETLKLNDNQLQG--EIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQML 370

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGSIPQ 539
           + NN+LTGE+P     L  ++ L L NN   G IP  LG N +LE +DL  N F G IP 
Sbjct: 371 VYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPP 430

Query: 540 TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDM 599
               G KL    L  N L G +P S+  C  L+ + + +N LSG +PE   + +L  +++
Sbjct: 431 HLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNL 490

Query: 600 RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW 659
             N+F GS+P++      L++++L+ N+L G +PP L N Q L +L++ +N ++   P  
Sbjct: 491 GSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQ 550

Query: 660 LDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMH 719
           L     L    + SN   G I    +   +  L  +  S N   G +P +  E       
Sbjct: 551 LSGCARLLYFDVGSNSLNGSI--PSSFRSWKSLSTLVLSDNNFLGAIPQFLAE------- 601

Query: 720 GNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVG 779
                                                L   + + ++ N F  KIP  VG
Sbjct: 602 -------------------------------------LDRLSDLRIARNAFGGKIPSSVG 624

Query: 780 KLNSLK-SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 838
            L SL+  L++S N  TG IP++L  L  LE L++S+NKL G + + L SL  L+ +++S
Sbjct: 625 LLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPL-SVLQSLKSLNQVDVS 683

Query: 839 NNQLEGPIPGGPQFNTFGNDS-YSGNSGLC 867
            NQ  GPIP     N   N S +SGN  LC
Sbjct: 684 YNQFTGPIP----VNLLSNSSKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  249 bits (637), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 236/724 (32%), Positives = 346/724 (47%), Gaps = 68/724 (9%)

Query: 165 LAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSF 224
           +A L+ + +   G +      L  L+ LDL +NNF G IP++LGN  T+LA LDLS N F
Sbjct: 77  VASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGN-CTKLATLDLSENGF 135

Query: 225 SGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNL 284
           S  IP +  +L++L  L L  N   GE+P SL   I +L  L L  N  +G IP S  + 
Sbjct: 136 SDKIPDTLDSLKRLEVLYLYINFLTGELPESLFR-IPKLQVLYLDYNNLTGPIPQSIGDA 194

Query: 285 QQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN 344
           ++L+ L++  N F G IP+   N + L  L L  N+L+GS+P S+  L NLT +++  ++
Sbjct: 195 KELVELSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNS 254

Query: 345 FSGSVELYDFAKLKNLKVLSLS--NISLSVSTKLTANSSFPNLSALDLSACNIS-EFPDN 401
             G V  +     KNL  L LS       V   L   SS   L AL + + N+S   P +
Sbjct: 255 LQGPVR-FGSPNCKNLLTLDLSYNEFEGGVPPALGNCSS---LDALVIVSGNLSGTIPSS 310

Query: 402 LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELD---LSRNFLTSIDHLPWKNLEYL 458
           L     L +L+LSEN++ G IP+ + +     L++L+   L     +++  L  + LE L
Sbjct: 311 LGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKL--RKLESL 368

Query: 459 HLDSNSLQGSLPD---LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP 515
            L  N   G +P        +    +  N+LTGE+P     +  ++   L NNS  G IP
Sbjct: 369 ELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIP 428

Query: 516 QCLG-NSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFL 574
             LG NS+LE +D   N   G IP     G KL  L L  N L G +P S+ +C  ++  
Sbjct: 429 PGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRF 488

Query: 575 DVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
            +  NNLSG +PE   + +L  LD   NNF G +P +      L S+NL+ NR  G +PP
Sbjct: 489 ILRENNLSGLLPEFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPP 548

Query: 635 SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRI 694
            L N Q L  +++  N ++ + P  L   + L+       RF                  
Sbjct: 549 QLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLE-------RF------------------ 583

Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
            D   N L G +P             +N S   G   L  S N +        GI  Q  
Sbjct: 584 -DVGFNSLNGSVP-------------SNFSNWKGLTTLVLSENRFSG------GIP-QFL 622

Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSL-KSLNISHNNLTGCIPSSLRNLTELESLDL 813
             L   +T+ ++ N F  +IP  +G +  L   L++S N LTG IP+ L +L +L  L++
Sbjct: 623 PELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNI 682

Query: 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGN-DSYSGNSGLCGFPLS 872
           S+N L G + + L  L  L  +++SNNQ  GPIP   +        S+SGN  LC  P S
Sbjct: 683 SNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIPDNLEGQLLSEPSSFSGNPNLC-IPHS 740

Query: 873 KSCS 876
            S S
Sbjct: 741 FSAS 744

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	957
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.928	0.902	0.424	1e-177
224111510	942	predicted protein [Populus trichocarpa]	0.929	0.944	0.419	1e-169
357493481	1087	Receptor-like protein kinase [Medicago t	0.945	0.832	0.393	1e-169
357493471	1109	Receptor-like protein kinase [Medicago t	0.818	0.706	0.446	1e-167
357493485	1060	Receptor-like protein kinase [Medicago t	0.834	0.753	0.433	1e-167
356551688	1135	PREDICTED: receptor-like protein 12-like	0.854	0.720	0.425	1e-165
359493479	814	PREDICTED: receptor-like protein 12-like	0.822	0.966	0.420	1e-165
357493411	1140	Receptor-like protein kinase [Medicago t	0.948	0.796	0.387	1e-162
224105451	1046	predicted protein [Populus trichocarpa]	0.937	0.857	0.404	1e-161
224118528	999	predicted protein [Populus trichocarpa]	0.951	0.911	0.412	1e-160

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 424/998 (42%), Positives = 564/998 (56%), Gaps = 109/998 (10%)

Query: 24  SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDS 83
           S  LC H Q+ ALL FKQ FS    SS  C+ +     PK  SWK+ +DCCSWDGVTCD 
Sbjct: 30  STKLCPHHQAIALLHFKQSFSIDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDW 89

Query: 84  ATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLL 143
            TGHVI LDLSCSWL G I SN++LF LP L++LNLAFN+F GS IS+GF  +F SLT L
Sbjct: 90  VTGHVIELDLSCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGF-GRFSSLTHL 148

Query: 144 DLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS----NLHQLRHLDLQSNNF 199
           +LC   F+G I P + ++++ L  LDLS N      P  F     NL +L+ L L   + 
Sbjct: 149 NLCDSEFSGPISPEI-SHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISI 207

Query: 200 VGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLD-DNHFVGEIPASLGN 258
               P  L N    L  LDL   +  G  P    +L +L  LDL  +N   G  P    N
Sbjct: 208 SSIFPKFLLN-WASLVSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSEN 266

Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
           N   L  L LSS  FSG +P+S  NL+ L  L L    F G IP    NL  L  L +  
Sbjct: 267 N--SLTELYLSSKNFSGELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMPG 324

Query: 319 NELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA 378
            E  GSIP+S+  L  +  ++L  ++FSG +           KV++  N           
Sbjct: 325 CEFSGSIPASLGNLTQIIALHLDRNHFSGKIS----------KVINFFN----------- 363

Query: 379 NSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSEN--QIGGRIPSWMWDIGVHTLI 435
             +F NL +L L++ N S + P ++     L+ L  S+N     G IPSW++ +   +L+
Sbjct: 364 --NFRNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNFNMFNGTIPSWLYTMP--SLV 419

Query: 436 ELDLSRNFLTS-IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS---ISNNSLTGEIP 491
           +LDLS N LT  I    + +LEY+ L  N L GS+P     +++     +S+N+ +G + 
Sbjct: 420 QLDLSHNKLTGHIGEFQFDSLEYIDLSMNELHGSIPGSIFKLINLRYLFLSSNNFSGVLE 479

Query: 492 SS----FCNLSS----------------------IQYLDLSNNSLSGQIPQCLGNSTLET 525
           +S      NL+S                      I+ LDLSNN++SG     +G +TL+ 
Sbjct: 480 TSNFGKLRNLTSLDLSNNMLSLTTSDDSKSMLPYIESLDLSNNNISGIWSWNMGKNTLQY 539

Query: 526 LDLRMNNFQG--SIPQTNAKGCKLTYLRLSGNHLEGPLP--PSLT--------------- 566
           L+L  N   G   +P  N     L  L L  N L+GPLP  P+ T               
Sbjct: 540 LNLSYNLISGFEMLPWKN-----LYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEIL 594

Query: 567 ----NCVKLQFLDVGNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVS 620
                   ++ LD+ NNNLSG +P CLGN    L VL++  N F G +PQTF K   + +
Sbjct: 595 SLFCKASSMRILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRN 654

Query: 621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680
           L+ NGN+L+G LP SL+ C+ LEVLD+GNN+I+DTFP+WL  L ELQVL+LRSN F G I
Sbjct: 655 LDFNGNQLEGLLPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHI 714

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
           G +K + PF  LRI+D ++N   G LP  YL S KA M+ +  ++   YM   G S Y +
Sbjct: 715 GCSKIKSPFMSLRIIDLAYNDFEGDLPEMYLRSLKATMNVDEGNMTRKYM---GDSYYQD 771

Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
           S+ +T+KG++++  +IL TF TIDLSSN+FQ +IP+ +G LNSL+ LN+SHN+L G IPS
Sbjct: 772 SVMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPS 831

Query: 801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSY 860
           S +NL  LESLDLSSNKL G IP +L SL +L VLNLS N L G IP G QF+TFGNDSY
Sbjct: 832 SFKNLKLLESLDLSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSY 891

Query: 861 SGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDA-SSWFDWKLAKLGYASGVVIGLSIG 919
           S NSGLCGFPLSK C  DEA E +      E D+     FDWK+  +GY  G+VIGLS+G
Sbjct: 892 SENSGLCGFPLSKKCITDEASESSK-----EADEEFDGGFDWKITLMGYGCGLVIGLSLG 946

Query: 920 YMAFVTRGPQWFVRMIERKQSRKLRRVIRRG--RASRR 955
            + F+T  P+ FV  IE    +K+RR  R    + +RR
Sbjct: 947 CLIFLTGKPKRFVWFIEENIHKKIRRSTRSTCRQGARR 984

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111510|ref|XP_002332925.1| predicted protein [Populus trichocarpa] gi|222834420|gb|EEE72897.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 422/1005 (41%), Positives = 557/1005 (55%), Gaps = 115/1005 (11%)

Query: 1   MGYITQPYQLLICLQLLLFY---SQCSAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQ 57
           MG+        +   L LF+   +  S+  C+  QS +LLQFK+ FS    +S+ C+   
Sbjct: 1   MGFSPPSLSQSLSFILFLFHFHSTISSSHFCALHQSLSLLQFKESFSINSSASIRCQ--- 57

Query: 58  QISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKL 117
               PK  SWKE  DCC WDGVTCD  TGHV GLDL+CS L+G + SNS+LF L  L+KL
Sbjct: 58  ---HPKTESWKEGTDCCLWDGVTCDMKTGHVTGLDLACSMLYGTLHSNSTLFSLHHLQKL 114

Query: 118 NLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG 177
           +L+ NDFN S ISS F  QF +LTLL+L   NF+                       F G
Sbjct: 115 DLSDNDFNSSHISSRF-GQFSNLTLLNL---NFS----------------------VFAG 148

Query: 178 HIPSSFSNLHQLRHLDLQSNNFVGKIPAS---LGNNITQLAYLDLSSNSFSGHIPSSFSN 234
            +PS  S+L +L  LDL  N ++   P S   L  N+T+L  LDLSS + S  +P S  N
Sbjct: 149 QVPSEISHLSKLVSLDLSDNGYLSLEPISFDKLVRNLTKLRELDLSSVNMSLLVPDSMMN 208

Query: 235 LQQLCYLDLD-DNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS----NLQQLLW 289
           L          D    G++P+S+G     L YLDLS N +    P SF     NL +L  
Sbjct: 209 LSSSLSSLKLNDCGLQGKLPSSMGR-FKHLQYLDLSENFYLSLEPISFDKLVQNLTKLRD 267

Query: 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYN-ELIGSIPSSIFELLNLTEIYLSFSN-FSG 347
           L L+  N     P+  TNL+        +N  L G  P +IF L NL  +YLS++   +G
Sbjct: 268 LALDRVNMSLVAPNSLTNLSSSFSSLSLWNCGLQGKFPGNIFLLPNLESLYLSYNEGLTG 327

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI-SEFPDNLRTQH 406
           S    + + +  L  LSLSN  +SV  K    S+  +L  + LS CNI S     L    
Sbjct: 328 SFPSSNLSNV--LSTLSLSNTRISVYLKNDLISNLKSLEYMYLSNCNIISSDLALLGNLT 385

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ 466
           QL  LD+S N   G+IPS + ++ VH                      L  L+LDSN   
Sbjct: 386 QLIFLDISGNNFSGQIPSSLGNL-VH----------------------LRSLYLDSNKFM 422

Query: 467 GSLPDLPPHMVSFS---ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ-CLGNST 522
           G +PD    +V  S   +SNN L G I      LS++QYL LSNN  +G IP   L   +
Sbjct: 423 GQIPDSFGSLVHLSDLYLSNNQLVGPIHFQLNTLSNLQYLYLSNNLFNGTIPSFLLALPS 482

Query: 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL----------------- 565
           L+ LDL  NN  G+I +       LTYL LS NHL GP+P S+                 
Sbjct: 483 LQYLDLHNNNLIGNISELQHN--SLTYLDLSNNHLHGPIPSSIFKQENLTTLILASNSKL 540

Query: 566 -----TNCVKLQFL---DVGNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKS 615
                ++  KL+FL   D+ NN+LSG  P+CLGN  S L VL + MNN  G++P TF+K 
Sbjct: 541 TGEISSSICKLRFLLVLDLSNNSLSGSTPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKD 600

Query: 616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
            +L  LNLNGN L+G +PPS++NC  LEVLD+GNN+I+DTFPY+L+ L ELQ+LIL+SN+
Sbjct: 601 NILEYLNLNGNELEGKIPPSIINCTMLEVLDLGNNKIEDTFPYFLETLPELQILILKSNK 660

Query: 676 FWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGS 735
             G +        F KLRI D S N  +G LP  Y  S +AMM  + N +   YMR    
Sbjct: 661 LQGFVKGPTAYNSFFKLRIFDISDNNFSGPLPTGYFNSLEAMMASDQNMI---YMRTTNY 717

Query: 736 SNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT 795
           + Y  SI +T KG++++  +I +T   +DLS+N F  +I +V+GKL +L+ LN+SHN+LT
Sbjct: 718 TGYVYSIEMTWKGVEIEFTKIRSTIRVLDLSNNNFTGEISKVIGKLKALQQLNLSHNSLT 777

Query: 796 GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTF 855
           G I SSL NLT LESLDLSSN L GRIPTQL  L +L++LNLS+NQLEG IP G QFNTF
Sbjct: 778 GHIQSSLENLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQLEGRIPSGGQFNTF 837

Query: 856 GNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSW---FDWKLAKLGYASGV 912
              S+ GN GLCGF + K C  DEAP    P+ F EGDD++ +   F WK   +GY  G 
Sbjct: 838 TASSFEGNLGLCGFQVLKECYGDEAPS-LPPSSFDEGDDSTLFGEGFGWKAVTVGYGCGF 896

Query: 913 VIGLSIGYMAFVTRGPQWFVRMIERK---QSRKLRRVIRRGRASR 954
           V G++ GY+ F T+ P WF+RM+E K   QS+K ++   R  A R
Sbjct: 897 VFGVATGYVVFRTKKPSWFLRMVEDKWNLQSKKTKKNAGRYGARR 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493481|ref|XP_003617029.1| Receptor-like protein kinase [Medicago truncatula] gi|355518364|gb|AES99987.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 426/1082 (39%), Positives = 586/1082 (54%), Gaps = 177/1082 (16%)

Query: 27   LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISR--PKMMSWKEDADCCSWDGVTCDSA 84
            LC+H  SSALLQFK   SF  ++S   +I+ + S    +  SWK + DCC WDGVTCD+ 
Sbjct: 31   LCNHHDSSALLQFKN--SFSVNTSSQPDIWSRCSSFSSRTESWKNNTDCCKWDGVTCDTE 88

Query: 85   TGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLD 144
            + +VIGLDLSC+ L G +  NS++F L RL++LNLAFN+F+ S I  G  D    LT L+
Sbjct: 89   SDYVIGLDLSCNNLKGELHPNSTIFQLRRLQQLNLAFNNFSWSSIPIGVGD-LVKLTHLN 147

Query: 145  LCSCNFTGSIPPSLGNNITQLAYLDLS----------INSFI------------------ 176
            L +C   G+IP ++  ++++L  LDLS          +NSFI                  
Sbjct: 148  LSNCYLNGNIPSTIS-HLSKLVSLDLSSYWYEQVGLKLNSFIWKKLIHNATNLRDLHLNG 206

Query: 177  --------------------------------GHIPSSFSNLHQLRHLDLQSN-NFVGKI 203
                                            G+I S   +L  L+ LDL  N N  G++
Sbjct: 207  VNMSSIGESSLSMLKNLSSSLVSLSLRNTVLQGNISSDILSLPNLQRLDLSFNQNLSGQL 266

Query: 204  PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL 263
            P S  N  T L YLDLS  +FSG IP S   L+ L  LD    +F G +P SL  N+TQL
Sbjct: 267  PKS--NWSTPLRYLDLSYTAFSGEIPYSIGQLKYLTRLDFSWCNFDGMVPLSLW-NLTQL 323

Query: 264  AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
             YLDLS+N  +G I    SNL+ L+  NL  NNF G IP ++ NL +L +L L+ N L G
Sbjct: 324  TYLDLSNNKLNGEISPLLSNLKHLIDCNLANNNFSGSIPIVYGNLIKLEYLALSSNNLTG 383

Query: 324  SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
             +PSS+F L +L+ + LSF+   G + + +  K   L  + L +  L+ +       S P
Sbjct: 384  QVPSSLFHLPHLSHLGLSFNKLVGPIPI-EITKRSKLSYVFLDDNMLNGTIPHWC-YSLP 441

Query: 384  NLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF 443
            +L  LDLS+ +++ F     T + L+ LDLS N + G I     +   ++L  L LS N 
Sbjct: 442  SLLYLDLSSNHLTGFIGEFST-YSLQYLDLSNNHLTGFIG----EFSTYSLQSLHLSNNN 496

Query: 444  LTSIDHLP-----WKNLEYLHLDSNSLQGS------------------------------ 468
            L    H P      +NL  L+L S +L G                               
Sbjct: 497  LQG--HFPNSIFQLQNLTELYLSSTNLSGVVDFHQFSKLKKLWHLVLSHNTFLAINTDSS 554

Query: 469  ----LPDLP-------------------PHMVSFSISNNSLTGEIPS------------- 492
                LP+L                    P++ S  +SNN++ G+IP              
Sbjct: 555  ADSILPNLVDLELSNANINSFPKFLAQLPNLQSLDLSNNNIHGKIPKWFHKKLLNSWKDI 614

Query: 493  -----SFCNL--------SSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIP 538
                 SF  L        SSI Y  LSNN+ +G I     N S+L TL+L  NNFQG +P
Sbjct: 615  QDLDLSFNKLQGDLPIPPSSIGYFSLSNNNFTGNISSTFCNASSLYTLNLAHNNFQGDLP 674

Query: 539  QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVL 597
                 G K  YL LS N+  G +  +  N   L  L++ +NNL+G IP+CLG  ++L VL
Sbjct: 675  -IPPDGIK-NYL-LSNNNFTGDISSTFCNASYLNVLNLAHNNLTGMIPQCLGTLTSLNVL 731

Query: 598  DMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
            DM+MNN  G++P+TF+K     ++ LNGN+L+GPLP SL +C +LEVLD+G+N I+DTFP
Sbjct: 732  DMQMNNLYGNIPRTFSKENAFQTIKLNGNQLEGPLPQSLSHCSFLEVLDLGDNNIEDTFP 791

Query: 658  YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM 717
             WL+ L ELQVL LRSN   G I  + T+  FPKLRI D S N  +G LP   +++F+ M
Sbjct: 792  NWLETLQELQVLSLRSNNLHGAITCSSTKHSFPKLRIFDVSINNFSGPLPTSCIKNFQGM 851

Query: 718  MHGNNNSVEVGYMRLPGSSNYY-ESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE 776
            M+ N++ + + Y    G   YY +S+ +T+KG  +++ RILT F TIDLS+N F+ +IP+
Sbjct: 852  MNVNDSQIGLQY---KGDGYYYNDSVVVTVKGFFIELTRILTAFTTIDLSNNMFEGEIPQ 908

Query: 777  VVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836
            V+G+LNSLK LN+S+N +TG IP SL +L +LE LDLS N+L G IP  L +LN+LSVL 
Sbjct: 909  VIGELNSLKGLNLSNNGITGSIPQSLGHLRKLEWLDLSCNQLTGEIPVALTNLNFLSVLK 968

Query: 837  LSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDAS 896
            LS N LEG IP G QFNTFGNDSY GN+ LCGFPLS+ C  DE   P + +     D+  
Sbjct: 969  LSQNHLEGIIPKGQQFNTFGNDSYEGNTMLCGFPLSRLCKNDEDLPPHSTS----EDEEE 1024

Query: 897  SWFDWKLAKLGYASGVVIGLSIGYMAFVTRG-PQWFVRMIERKQSRKLRRVIRRGRASRR 955
            S F WK   +GY  G + G  +GY  F   G PQW VR++E   + +L+R   R  A+RR
Sbjct: 1025 SGFGWKAVAIGYGCGAISGFLLGYNVFFFTGKPQWLVRIVENMFNIRLKRTNNRYCANRR 1084

Query: 956  SL 957
             +
Sbjct: 1085 RM 1086

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493471|ref|XP_003617024.1| Receptor-like protein kinase [Medicago truncatula] gi|355518359|gb|AES99982.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 377/845 (44%), Positives = 492/845 (58%), Gaps = 62/845 (7%)

Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSIN 173
           LR LNL  + F+G    S    Q  SLT L L  CN  G +P SL N +TQL YLDLS N
Sbjct: 210 LRYLNLRLSAFSGEIPYS--IGQLKSLTQLVLSDCNLDGMVPLSLWN-LTQLTYLDLSFN 266

Query: 174 SFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFS 233
              G I    SNL  L H DL  NNF G IP   GN + +L YL L  N+ +G +PSS  
Sbjct: 267 KLNGEISPLLSNLKHLIHCDLGFNNFSGSIPIVYGN-LIKLEYLSLYFNNLTGQVPSSLF 325

Query: 234 NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE 293
           +L  L +L L  N  VG IP  +    ++L Y+ L  N  +G IP    +L  LL L L 
Sbjct: 326 HLPHLSHLYLAYNKLVGPIPIEIAKR-SKLRYVGLDDNMLNGTIPHWCYSLPSLLELYLS 384

Query: 294 YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYD 353
            NN  G I +  T    L  L L  N L G  P+SIF+L NLT + LS +N SG V+ + 
Sbjct: 385 DNNLTGFIGEFST--YSLQSLYLFNNNLQGHFPNSIFQLQNLTYLDLSSTNLSGVVDFHQ 442

Query: 354 FAKLKNLKVLSLSNIS-LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLD 412
           F+KL  L  L LS+ S LS++   +A+S  PNL +L LS+ NI  FP  L   H L+ LD
Sbjct: 443 FSKLNKLSSLDLSHNSFLSINIDSSADSILPNLESLYLSSANIKSFPKFLARVHNLQWLD 502

Query: 413 LSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL 472
           LS N I G+IP W     ++T                  WK++ Y+ L  N LQG LP  
Sbjct: 503 LSNNNIHGKIPKWFHKKLLNT------------------WKDIRYIDLSFNMLQGHLPIP 544

Query: 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNN 532
           P  +V F +SNN+ TG I S+F N SS                       L TL+L  NN
Sbjct: 545 PDGIVYFLLSNNNFTGNISSTFRNASS-----------------------LYTLNLAHNN 581

Query: 533 FQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN- 591
           FQG +P     G K  Y  LS N+  G +  +  N   L  LD+ +NNL+G IP+CLG  
Sbjct: 582 FQGDLP-IPPSGIK--YFSLSNNNFTGYISSTFCNASSLYMLDLAHNNLTGMIPQCLGTL 638

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ 651
           ++L VLDM+MNN  GS+P+TF+K     ++ LNGN+L+GPLP SL NC YLEVLD+G+N 
Sbjct: 639 TSLTVLDMQMNNLYGSIPRTFSKGNAFETIKLNGNQLEGPLPQSLANCSYLEVLDLGDNN 698

Query: 652 IDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711
           ++DTFP WL+ L ELQV+ LRSN   G I  + T+  FPKLRI D S+N  +G LP   +
Sbjct: 699 VEDTFPDWLETLPELQVISLRSNNLHGAITCSSTKHTFPKLRIFDVSNNNFSGPLPTSCI 758

Query: 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYY-ESIFLTMKGIDLQMERILTTFATIDLSSNRF 770
           ++F+ MM+ N+N+  + YM   G S YY +S+ +TMKG  +++ +ILTTF TIDLS+N F
Sbjct: 759 KNFQGMMNVNDNNTGLQYM---GDSYYYNDSVVVTMKGFFMELTKILTTFTTIDLSNNMF 815

Query: 771 QRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN 830
           + +IP+V+G+LNSLK LN+S+N + G IP SL +L  LE LDLS N+L G IP  L +LN
Sbjct: 816 EGEIPQVIGELNSLKGLNLSNNGIIGSIPQSLSHLRNLEWLDLSCNQLKGEIPVALTNLN 875

Query: 831 YLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFI 890
           +LSVLNLS N LEG IP G QFNTFGNDS+ GN+ LCGF LSKSC  +E   P + +   
Sbjct: 876 FLSVLNLSQNHLEGIIPKGQQFNTFGNDSFEGNTMLCGFQLSKSCKNEEDLPPHSTS--- 932

Query: 891 EGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRG-PQWFVRMIERKQSRKLRRVIRR 949
             D+  S F WK   +GYA G + GL +GY  F   G P+W  R +E     +L+R   R
Sbjct: 933 -EDEEESGFGWKAVAIGYACGAIFGLLLGYNVFFFTGKPEWLARHVEHMFDIRLKRTNNR 991

Query: 950 GRASR 954
             A++
Sbjct: 992 AIANQ 996

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493485|ref|XP_003617031.1| Receptor-like protein kinase [Medicago truncatula] gi|355518366|gb|AES99989.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 384/886 (43%), Positives = 507/886 (57%), Gaps = 87/886 (9%)

Query: 98   LHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKI---------------SSGFTDQFP---- 138
            L GNI S+  +  LP L++L+L+FN     ++               SS F+ + P    
Sbjct: 235  LQGNISSD--ILSLPNLQRLDLSFNQNLSGQLPKSNWSTPLRYLVLSSSAFSGEIPYSIG 292

Query: 139  ---SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
               SLT L L  CNF G +P SL N +TQL +LDLS+N   G I    SNL  L H  L 
Sbjct: 293  QLKSLTQLVLSHCNFDGMVPLSLWN-LTQLTHLDLSLNKLNGEISPLLSNLKHLIHCYLA 351

Query: 196  SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
             NNF G IP   GN + +L YL LSSN+ +G +PSS  +L  L +L L DN  VG IP  
Sbjct: 352  YNNFSGSIPNVYGN-LIKLKYLALSSNNLTGQVPSSLFHLPHLSHLYLADNKLVGPIPIE 410

Query: 256  LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
            +    ++L+Y+ L  N  +G IP    +L  LL L L  N+  G I +  T    L  L 
Sbjct: 411  ITKR-SKLSYVFLDDNMLNGTIPQWCYSLPSLLELGLSDNHLTGFIGEFST--YSLQSLD 467

Query: 316  LAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS-NISLSVST 374
            L+ N L G  P+SIF+L NLT +YLS +N SG V+ + F+KL  L  L LS N  LS++ 
Sbjct: 468  LSNNNLQGHFPNSIFQLQNLTYLYLSSTNLSGVVDFHQFSKLNKLWYLVLSHNTFLSINI 527

Query: 375  KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
              + +S  PNL +LDLS+ NI+ FP        L+ LDLS N I G+IP W      HT 
Sbjct: 528  DSSIDSIIPNLFSLDLSSANINSFPK--FQARNLQTLDLSNNNIHGKIPKWF-----HT- 579

Query: 435  IELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF 494
                     L S     WK++ Y+ L  N LQG LP +PP                    
Sbjct: 580  -------KLLNS-----WKDIRYIDLSFNMLQGDLP-IPP-------------------- 606

Query: 495  CNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
               S IQY  LSNN+ +G I     N S+L TL+L  NNFQG +P        + Y  LS
Sbjct: 607  ---SGIQYFSLSNNNFTGNISSTFRNASSLYTLNLAHNNFQGDLP---IPPSGIQYFSLS 660

Query: 554  GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTF 612
             N+  G +  +  N   L  LD+ +NNL G IP+CLG    L VLDM+MNN  GS+P+TF
Sbjct: 661  NNNFTGYISSTFCNASSLYVLDLAHNNLKGMIPQCLGTFPNLYVLDMQMNNLYGSIPRTF 720

Query: 613  AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
             K     ++ LNGN+L+G LP SL NC YLEVLD+G+N ++DTFP WL+ L ELQV+ LR
Sbjct: 721  TKGNAFETIKLNGNQLEGSLPQSLANCSYLEVLDLGDNNVEDTFPDWLETLPELQVISLR 780

Query: 673  SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL 732
            SN   G I  + T+  FPKLRI D S+N  +G LP   +++F+ MM  N+  +++ YMR 
Sbjct: 781  SNNLHGAITCSSTKHTFPKLRIFDVSNNNFSGPLPASCIKNFQGMMKVNDKKIDLQYMR- 839

Query: 733  PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHN 792
              +  Y +S+ +T+KG  +++ RILT F TIDLS+N F+ +IP+V+G+LNSLK LN+S+N
Sbjct: 840  --NGYYNDSVVVTVKGFFIELTRILTAFTTIDLSNNMFEGEIPQVIGELNSLKGLNLSNN 897

Query: 793  NLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQF 852
             +T  IP SL +L  LE LDLS N+L G IP  L +LN+LSVLNLS N LEG IP G QF
Sbjct: 898  GITSSIPQSLSHLRNLEWLDLSCNQLKGEIPVALTNLNFLSVLNLSQNHLEGIIPKGQQF 957

Query: 853  NTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGV 912
            NTFGNDS+ GN+ LCGFPLSKSC  +E   P + +     D+  S F WK   +GYA G 
Sbjct: 958  NTFGNDSFEGNTMLCGFPLSKSCKNEEDLPPHSTS----EDEEESGFGWKAVAIGYACGA 1013

Query: 913  VIGLSIGYMAFVTRG-PQWFVRMIERKQSRKLRRVIRRGRASRRSL 957
            + GL  GY  F   G P+W VR +E     +L+R   R  A+RR +
Sbjct: 1014 IFGLLFGYNVFFFTGKPEWLVRHVEHMFDIRLKRTNNRAIANRRRM 1059

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551688|ref|XP_003544206.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 376/883 (42%), Positives = 514/883 (58%), Gaps = 65/883 (7%)

Query: 98   LHGNIPSNSSLFFLPRLRKLNLAFN-DFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP 156
            L G + +N  +  LP L+KL+L+ N D  G      F    P L  LDL    F+G +P 
Sbjct: 225  LQGKLANN--ILCLPNLQKLDLSVNLDLQGELPE--FNRSTP-LRYLDLSYTGFSGKLPN 279

Query: 157  SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216
            ++ N++  L YL      F G IP   SNL QL+HLDL  NNF G+IP+SL +N+  L +
Sbjct: 280  TI-NHLESLNYLSFESCDFGGPIPVFLSNLMQLKHLDLGGNNFSGEIPSSL-SNLKHLTF 337

Query: 217  LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
            LDLS N+F G IP  F  L ++ YL +  N+ VG++P+SL   +TQL+ LD S N   G 
Sbjct: 338  LDLSVNNFGGEIPDMFDKLSKIEYLCISGNNLVGQLPSSLFG-LTQLSDLDCSYNKLVGP 396

Query: 277  IPSSFSNLQQLLWLNLEYNNFVGKIPDM-----------------------FTNLTQLSF 313
            +P   S L  L  L+L  N+  G IP                         F++ + L +
Sbjct: 397  MPDKISGLSNLCSLDLSTNSMNGTIPHWCFSLSSLIQLSLHGNQLTGSIGEFSSFS-LYY 455

Query: 314  LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN---ISL 370
              L+YN+L G+IP+S+F L NLT + LS +N +G V+ + F+ ++ L++L LS+   + L
Sbjct: 456  CDLSYNKLQGNIPNSMFHLQNLTWLSLSSNNLTGHVDFHKFSNMQFLEILDLSDNNFLYL 515

Query: 371  SVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
            S +     + +F NL  L LS+CNI+ FP  L     L  LDLS NQI G+IP W    G
Sbjct: 516  SFNNT-EGDYNFLNLQYLYLSSCNINSFPKLLSGLKYLNSLDLSRNQIHGKIPKWFNSTG 574

Query: 431  VHTLIELDLSRNFLTSIDHLP--WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
              TL  LDLS N LTS+ +L   W  ++Y+ L  N LQG +P  P  +  FS+SNN LTG
Sbjct: 575  KDTLSFLDLSHNLLTSVGYLSLSWATMQYIDLSFNMLQGDIPVPPSGIEYFSVSNNKLTG 634

Query: 489  EIPSSFCNLSSIQ--------------YLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQ 534
             I S+ CN SS+Q              +LDLS+N L+      L  +T++ +DL  N  Q
Sbjct: 635  RISSTICNASSLQIPKWFNSTGKDTLSFLDLSHNLLTSVGYLSLSWATMQYIDLSFNMLQ 694

Query: 535  GSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-ST 593
            G IP        + Y  +S N L G +  ++ N   LQ L++ +NNL+G++P+CLG    
Sbjct: 695  GDIP---VPPSGIEYFSVSNNKLTGRISSTICNASSLQILNLSHNNLTGKLPQCLGTFPY 751

Query: 594  LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
            L VLD+R N  SG +P+T+ +   LV++N NGN+L+G LP S+V C+ L+VLD+G N I 
Sbjct: 752  LSVLDLRRNMLSGMIPKTYLEIEALVTMNFNGNQLEGQLPRSVVKCKQLKVLDLGENNIQ 811

Query: 654  DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713
            DTFP +L+ L +LQVL+LR+NRF G I   K +  FP LR+ D S+N  +G LP   +E 
Sbjct: 812  DTFPTFLESLQQLQVLVLRANRFNGTINCLKLKNVFPMLRVFDISNNNFSGNLPTACIED 871

Query: 714  FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRK 773
            FK MM   +N +E  YM      NYY+S+ +T+KG   ++ERILTTF T+DLS+NRF   
Sbjct: 872  FKEMMVNVHNGLE--YMS---GKNYYDSVVITIKGNTYELERILTTFTTMDLSNNRFGGV 926

Query: 774  IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
            IP ++G+L SLK LN+SHN + G IP +   L  LE LDLSSN L G IP  L +L++LS
Sbjct: 927  IPAIIGELKSLKGLNLSHNRINGVIPQNFGGLENLEWLDLSSNMLTGEIPKALTNLHFLS 986

Query: 834  VLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGD 893
            VLNLS NQL G IP G QF+TF NDSY GN GLCG PLSKSC  DE     + T      
Sbjct: 987  VLNLSQNQLLGMIPTGKQFDTFQNDSYEGNQGLCGLPLSKSCHNDEKLPKDSAT---FQH 1043

Query: 894  DASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIE 936
            D    F WK   +GYA GVV G+ +GY+ F  R  +W +  +E
Sbjct: 1044 DEEFRFGWKPVAIGYACGVVFGILLGYIVFFFRKTEWSISFVE 1086

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 376/895 (42%), Positives = 520/895 (58%), Gaps = 108/895 (12%)

Query: 59  ISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLN 118
           ++ PK  SWK+ +DCCSWDGVTCD  TGHVIGLDLSCSWL+G I SNS+LF  P LR+  
Sbjct: 1   MAYPKTESWKKGSDCCSWDGVTCDKVTGHVIGLDLSCSWLYGTIHSNSTLFLFPHLRR-- 58

Query: 119 LAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGH 178
                                                            L+L+ N F G 
Sbjct: 59  -------------------------------------------------LNLAFNDFNGS 69

Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
             S+  N + L  LDL + NF G++PAS+GN +  L  LDL +   S  IP+S  NL+ L
Sbjct: 70  SISAGEN-NSLMELDLSNTNFSGELPASMGN-LKFLQTLDLHNCKLSRSIPTSIGNLKSL 127

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
             LDL    F G IPASL  N+TQ+  L L+ N FSG+IP+ F+NL+ L+ L L  NNF 
Sbjct: 128 QTLDLTFCEFSGSIPASL-ENLTQITSLYLNGNHFSGNIPNVFNNLRNLISLVLSSNNFS 186

Query: 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
           G++P    NLT L +L ++ N+L G I S +    +L+ + L ++ F+G++  + +    
Sbjct: 187 GQLPPSIGNLTNLKYLDISNNQLEGVIFSHVNGFSSLSFVNLGYNLFNGTIPSWLYTLPS 246

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
            + +    N       KLT +     +  + +++               LE ++LS NQ+
Sbjct: 247 LVSLSLSHN-------KLTGH-----IGEIQIAS---------------LEAINLSMNQL 279

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSI----DHLPWKNLEYLHLDSN----SLQGSLP 470
            G IPS ++ +    L  L LS N L+ I      +  +NL +L L +N    +   S  
Sbjct: 280 YGSIPSSIFKL--INLRSLYLSSNNLSGILETSTFVKLRNLAWLDLSNNMLSLTTSSSSN 337

Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRM 530
            + P++V   +SNN ++G+   +     +++ L+LS N +SG   + L    ++ LDLR 
Sbjct: 338 SILPNIVGLDLSNNKISGKWTWNMGK-DTLKSLNLSYNLISGF--ELLPWKKIQILDLRS 394

Query: 531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG 590
           N  QG +P          +  +S N L G + PS+     +  LD+ NNNLSG++P CLG
Sbjct: 395 NLLQGPLP---TPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLG 451

Query: 591 N--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648
           N    L VL+++ N F G++PQTF K  V+ +L+ NGN+L+G +P SL+ C+ LEVLD+G
Sbjct: 452 NFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDLG 511

Query: 649 NNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
           NN+I+DTFP+WL+ L +LQVL+LRSN F G IG +K + PF  LRI+D + N   G LP 
Sbjct: 512 NNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPE 571

Query: 709 WYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSN 768
            YL S KA+M+ +   +   YM   G   Y +SI +T+KG+++++ +IL TF TIDLSSN
Sbjct: 572 MYLRSLKAIMNVDEGKMTRKYM---GDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSN 628

Query: 769 RFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 828
           +FQ +IPE +G LNSL+ LN+SHNNL G IPSS  NL  LESLDLSSNKL GRIP +L S
Sbjct: 629 KFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTS 688

Query: 829 LNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTG 888
           L +L VLNLS N L G IP G QF TFGNDSY+GNSGLCGFPLSK C+ DE  EP+    
Sbjct: 689 LTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSK--- 745

Query: 889 FIEGD-DASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRK 942
             E D +  S FDWK+  +GY  G+VIGLS+G   F+T  P+WFVR+IE     K
Sbjct: 746 --EADAEFESGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEENLHNK 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493411|ref|XP_003616994.1| Receptor-like protein kinase [Medicago truncatula] gi|355518329|gb|AES99952.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 415/1072 (38%), Positives = 563/1072 (52%), Gaps = 164/1072 (15%)

Query: 27   LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRP-------KMMSWKEDADCCSWDGV 79
            LC+H  +SALLQFK  F F   SS     F   S P       K  SW+   DCC WDGV
Sbjct: 25   LCNHHDTSALLQFKNSF-FVDTSSKPDPFFISYSGPSCSSFSFKTESWENSTDCCEWDGV 83

Query: 80   TCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPS 139
            TCD+ + HVIGLDLSC+ L G +  NS +F L  L++LNLAFN+F+GS +  G  D    
Sbjct: 84   TCDTMSDHVIGLDLSCNKLKGELHPNSIIFQLRHLQQLNLAFNNFSGSSMPIGVGD-LVK 142

Query: 140  LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS----NLHQLRHLDLQ 195
            LT L+   CN  G+IP ++  ++++L  LDLS N F+     ++     N   LR L L 
Sbjct: 143  LTHLNTSYCNLNGNIPSTIS-HLSKLVSLDLSFN-FVELDSLTWKKLIHNATNLRELHLN 200

Query: 196  SNNFVGKIPASL---------------------GN------NITQLAYLDLSSN------ 222
              N      +SL                     GN      ++  L  LDLS N      
Sbjct: 201  IVNMSSLRESSLSMLKNLSSSLVSLSLSETELQGNLSSDILSLPNLQRLDLSFNQNLSGQ 260

Query: 223  ------------------SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA 264
                              +FSG IP S   L+ L  LD    +  G +P SL  N+TQL 
Sbjct: 261  LPKSNWSTPLRYLVLSSSAFSGEIPYSIGQLKYLTRLDFSRCNLDGMVPLSLW-NLTQLT 319

Query: 265  YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
            YLDLS N  +G I    SNL+ L+  +L +NNF   IP ++ NL +L +L L+ N L G 
Sbjct: 320  YLDLSFNKLNGEISPLLSNLKHLIHCDLGFNNFSSSIPIVYGNLIKLEYLALSSNNLTGQ 379

Query: 325  IPSSIFELLNLTEIYLSFSNFSG--SVELYDFAKLK---------------------NLK 361
            +PSS+F L +L+ +YLS +   G   +E+   +KL                      +L 
Sbjct: 380  VPSSLFHLPHLSHLYLSSNKLVGPIPIEITKRSKLSYVFLGDNMLNGTIPHWCYSLPSLL 439

Query: 362  VLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGR 421
             L LSN +L   T      S  +L  LDLS  +++ F     T + L+ L LS N + G 
Sbjct: 440  ELYLSNNNL---TGFIGEFSTYSLQYLDLSNNHLTGFIGEFST-YSLQYLLLSNNNLQGH 495

Query: 422  IPSWMWDIGVHTLIELDLSRNFLTSIDHL----PWKNLEYLHLDSNSLQG---------- 467
             P+ ++++    L  LDLS   L+ +           L +LHL  NS             
Sbjct: 496  FPNSIFEL--QNLTYLDLSSTNLSGVVDFHQFSKLNKLWFLHLSHNSFLSINIDSSADSI 553

Query: 468  ---------------SLPDLPP-HMVSFSISNNSLTGEIPSSFC-----NLSSIQYLDLS 506
                           S P  P  ++    +SNN++ G+IP  F      +   IQYLDLS
Sbjct: 554  LPNLFLLDLSSANINSFPKFPARNLKRLYLSNNNIRGKIPKWFHKKLLNSWKDIQYLDLS 613

Query: 507  NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG--PLPPS 564
             N L G +P  +  S +E   L  NNF G I  T      L  L L+ N+ +G  P+PPS
Sbjct: 614  FNKLQGDLP--IPPSGIEYFSLSNNNFTGYISSTFCNASSLRTLNLAHNNFQGDLPIPPS 671

Query: 565  -------------------LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNF 604
                                 N   L  LD+ +NNL+G IP+CLG  ++L VLDM+MNN 
Sbjct: 672  GIQYFSLSNNNFTGYISSTFCNASSLYVLDLAHNNLTGMIPQCLGTLTSLNVLDMQMNNL 731

Query: 605  SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL 664
             GS+P+TF K     ++ LNGN+L+GPLP SL NC YLEVLD+G+N ++DTFP WL+ L 
Sbjct: 732  YGSIPRTFTKGNAFETIKLNGNQLEGPLPQSLANCSYLEVLDLGDNNVEDTFPDWLETLP 791

Query: 665  ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
            ELQV+ LRSN   G I  + T+  FPKLRI D S+N  +G LP   +++F+ MM+ N+N+
Sbjct: 792  ELQVISLRSNNLHGAITCSSTKHTFPKLRIFDVSNNNFSGPLPTSCIKNFQGMMNVNDNN 851

Query: 725  VEVGYMRLPGSSNYY-ESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNS 783
              + YM   G S YY +S+ +T+KG  +++ RILT F TIDLS+N F+ +IP+V+G+LNS
Sbjct: 852  TGLQYM---GDSYYYNDSVVVTVKGFFIELTRILTAFTTIDLSNNMFEGEIPQVIGELNS 908

Query: 784  LKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            LK LN+S+N +TG IP SL +L  LE LDLS N+L G IP  L +LN+LSVLNLS N LE
Sbjct: 909  LKGLNLSNNGITGSIPQSLSHLRNLEWLDLSCNQLTGEIPEALTNLNFLSVLNLSQNHLE 968

Query: 844  GPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSWFDWKL 903
            G IP G QFNTF NDS+ GN+ LCGF LSKSC  +E   P + +     D+  S F WK 
Sbjct: 969  GIIPKGQQFNTFENDSFEGNTMLCGFQLSKSCKNEEDLPPHSTS----EDEEESGFGWKA 1024

Query: 904  AKLGYASGVVIGLSIGYMAFVTRG-PQWFVRMIERKQSRKLRRVIRRGRASR 954
              +GY  G + G  +GY  F   G PQW VR++E   + +L+R   R  A+ 
Sbjct: 1025 VAIGYGCGAISGFLLGYNVFFFTGKPQWLVRIVENMFNIRLKRTNNRYCANH 1076

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105451|ref|XP_002313815.1| predicted protein [Populus trichocarpa] gi|222850223|gb|EEE87770.1| predicted protein [Populus trichocarpa]

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 418/1034 (40%), Positives = 555/1034 (53%), Gaps = 137/1034 (13%)

Query: 27   LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATG 86
            LC+ DQS  LLQFK+ F     +S     F+    PK  SWKE  DCC WDGVTCD  +G
Sbjct: 38   LCARDQSIHLLQFKESFFIDPSAS-----FEDCENPKTESWKEGTDCCLWDGVTCDIKSG 92

Query: 87   HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
             VIGLDL+CS L+G + SNS+LF L  L+KL+L++NDFN S ISS F   F SLT L+L 
Sbjct: 93   QVIGLDLACSMLYGTLHSNSTLFSLHHLQKLDLSYNDFNLSHISSQF-GHFSSLTHLNLN 151

Query: 147  SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS----NLHQLRHLDLQSNN---- 198
              +FTG +P  + +++++L  LDLS N+ +   P  F+    NL +LR L L   +    
Sbjct: 152  YSDFTGLVPSQI-SHLSKLVSLDLSYNNKLALEPIPFNKLVQNLTKLRELHLSEVDMSLV 210

Query: 199  ---------------------FVGKIPASLGNNITQLAYLDLSSN-SFSGHIPSSFSNLQ 236
                                 F GK+P+++   ++ L  LDLS N   +G  P  F+   
Sbjct: 211  VPSSLMNLSSPLSSLQLVDCGFQGKLPSNVPG-LSNLQLLDLSENIDLTGSFPP-FNVSN 268

Query: 237  QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
             L YLDL        +P  LGN +TQL  LD+S N  +GHIP S   L+ L  LNL +NN
Sbjct: 269  ALSYLDLSMTGISIHLPR-LGN-LTQLTVLDISYNNLTGHIPFSIGKLKHLQTLNLGFNN 326

Query: 297  FVGKIPDMFTNLTQLSFLGLAYNE------------------------------------ 320
            F   +P  F  L++L  L L+ N                                     
Sbjct: 327  FTSLVPSDFEQLSELVSLDLSGNSYLTLDSSSLNKLVQNLTKLRELRLRWVNMSLVVPTS 386

Query: 321  -----------------LIGSIPSSIFELLNLTEIYLSFSNFSGSVEL----YDFAKLKN 359
                             L G  P++IF L NL      F N  G+V L           +
Sbjct: 387  LKNLSSSLSILSFGNCGLRGKFPANIFLLPNL-----EFLNLGGNVGLTGSFPSSNVSSS 441

Query: 360  LKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN--LRTQHQLELLDLSENQ 417
            L+ L+L +  +S+S +    ++  +L  L L  CNIS   +   L    QL  LDLS N 
Sbjct: 442  LEELALFDTKISISIENDFINNLKSLKNLVLRNCNISRRSNLALLGNLTQLIELDLSFNN 501

Query: 418  IGGRIPSWMWDIGVHTLIELDLSRN--------FLTSIDHLPWKNLEYLHLDSNSLQGSL 469
            + GRIPS + ++    L  LDLS N        FL S+  L     + L L  N L G +
Sbjct: 502  LSGRIPSSLANL--VNLNWLDLSSNNFKGQIPDFLGSLTQL-----QRLFLSDNQLLGPI 554

Query: 470  -PDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETL 526
             P +   P++ S  +S+N  TG IPS   +  S+QYLDL  N  +G + +   NS L  L
Sbjct: 555  SPQISSLPYLTSLMLSDNLFTGTIPSFLFSHPSLQYLDLHGNLFTGNLSEFQYNS-LILL 613

Query: 527  DLRMNNFQGSIPQTNAKGCKLTYLRL-SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQI 585
            DL  N+  G IP +      L  L+L S N L G +  S      LQ LD+ NN+LSG I
Sbjct: 614  DLSNNHLHGPIPSSVFNQENLIVLKLASNNKLTGEISSSACKLTALQVLDLSNNSLSGFI 673

Query: 586  PECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLE 643
            P+CLGN   +L VL + MN+  G++   F     L  LNLNGN L+G +PPS++NC  LE
Sbjct: 674  PQCLGNFSDSLSVLHLGMNDLQGTILSRFLVGNNLRYLNLNGNELEGEIPPSMINCTQLE 733

Query: 644  VLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
            VLD+G N+I   FPY+LD L ELQVL+L+SN   G +    T   F KLRI D S N  +
Sbjct: 734  VLDLGFNKIKGKFPYFLDTLQELQVLVLKSNELHGFVKGPTTNYAFSKLRIFDISSNNFS 793

Query: 704  GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATI 763
            G LP  Y    +AM   + + +   YM++   S Y  S+ LT KG++++  +I +T A+I
Sbjct: 794  GPLPTGYFNGLEAMKTLDQDMI---YMKVRNIS-YDYSVKLTWKGLEIEFAKIRSTLASI 849

Query: 764  DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
            DLS N F  +IPE +GKLN+LK LN SHN+LTG I  SL NL  LESLDLSSN L GRIP
Sbjct: 850  DLSHNSFIGEIPESIGKLNALKQLNFSHNSLTGYIQPSLGNLANLESLDLSSNLLTGRIP 909

Query: 824  TQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEP 883
             QLA L +LSVLNLS+NQLEGPIP G QFNTF   S+ GNSGLCGF +SK C+  E  +P
Sbjct: 910  MQLADLTFLSVLNLSHNQLEGPIPKGKQFNTFNKGSFEGNSGLCGFQISKECNRGETQQP 969

Query: 884  TTPTGFIEGDDASSW---FDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQS 940
              P+   EGDD+S +   F WK   +GY  G V+G ++GY+ F TR P WFVRM+E + +
Sbjct: 970  -PPSNSEEGDDSSLFGDGFGWKAVVMGYGCGFVLGATVGYIVFRTRKPAWFVRMVEVQWN 1028

Query: 941  RKLRRVIRRGRASR 954
             K +   R+ +A R
Sbjct: 1029 LKTKG--RKKKAHR 1040

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118528|ref|XP_002317843.1| predicted protein [Populus trichocarpa] gi|222858516|gb|EEE96063.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 405/981 (41%), Positives = 553/981 (56%), Gaps = 70/981 (7%)

Query: 27  LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATG 86
            C+ DQS +LLQFK+ FS    +S  C+       PK  SW+E  DCCSWDGVTC+  TG
Sbjct: 36  FCAPDQSLSLLQFKESFSISSSASGRCQ------HPKTESWREGTDCCSWDGVTCELETG 89

Query: 87  HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
            V  LDL+CS L+G + SNS+LF L  L+KL+L+ NDF  S ISS F  QF +LT L+L 
Sbjct: 90  QVTALDLACSMLYGTLHSNSTLFSLHHLQKLDLSDNDFQSSHISSSF-GQFSNLTYLNLN 148

Query: 147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS----NLHQLRHLDLQSNNFVGK 202
              F G +P  + +++++L  LDLS   ++   P SF     NL QLR LDL S +    
Sbjct: 149 YSVFAGQVPWEI-SHLSKLVSLDLS-GDYLSLEPISFDKLVRNLTQLRELDLSSVDMSLV 206

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
            P SL N  + L+ L L S    G  PSS    + L  LDL  N+  G IP  L   +T+
Sbjct: 207 TPNSLMNLSSSLSSLILRSCGLQGEFPSSMRKFKHLQQLDLAANNLTGPIPYDL-EQLTE 265

Query: 263 LAYLDLS--SNGFSGHIPSSFS----NLQQLLWLNLEYNN-------------------- 296
           L  L LS   N +    P SF     NL QL  L L + N                    
Sbjct: 266 LVSLALSGNENDYLSLEPISFDKLVRNLTQLRELYLWWVNMPLVVPNSLMNLSSSLSSLT 325

Query: 297 -----FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVEL 351
                  GK P        L +L L Y+ L GSIP  + +L  L  I LSF+++  SVE 
Sbjct: 326 LYSCGLQGKFPSSVRKFKHLQYLDLRYSNLTGSIPDDLGQLTELVSIDLSFNDYL-SVEP 384

Query: 352 YDFAK----LKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI-SEFPDNLRTQH 406
             F K    L  L+ L L  +++ +    +  +   +LSAL L  C +  +FPDN+    
Sbjct: 385 SSFDKIIQNLTKLRGLRLGYVNMPLVIPNSLANLSSSLSALALWGCGLHGKFPDNIFLLP 444

Query: 407 QLELLDLSENQ-IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSL 465
            LE+LDL+ N  + G  PS    + V  L   +++R+ L+ I  L   +L  L L  ++ 
Sbjct: 445 NLEVLDLTYNDDLTGSFPSSNL-LEVLVLRNSNITRSNLSLIGDL--THLTRLDLAGSNF 501

Query: 466 QGSLPDLPPHMV---SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST 522
            G +P    ++V   S  + NN+ +G IP    NL+ ++ L LSNN LSG IP  +   +
Sbjct: 502 SGQVPSSLTNLVQLQSLYLDNNNFSGRIPEFLGNLTLLENLGLSNNQLSGPIPSQISTLS 561

Query: 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRL-SGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
           L   DL  NN  G IP +  K   L  L L S N L G +  S+     LQ LD+ NN+L
Sbjct: 562 LRLFDLSKNNLHGPIPSSIFKQGNLDALSLASNNKLTGEISSSICKLKFLQLLDLSNNSL 621

Query: 582 SGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNC 639
           SG +P+CLGN  ++L +L++ MNN  G++   F K   L  LNLNGN L+G +P S++NC
Sbjct: 622 SGFVPQCLGNFSNSLLILNLGMNNLQGTIFSQFPKGNNLGYLNLNGNELEGKIPLSIINC 681

Query: 640 QYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSH 699
             LE+LD+GNN+I+DTFPY+L++L EL VL+L+SN+  G +        F KLRI D S 
Sbjct: 682 TMLEILDLGNNKIEDTFPYFLEMLPELHVLVLKSNKLQGFVNGPIANNSFSKLRIFDISS 741

Query: 700 NQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTT 759
           N L+G LP  Y  SFKAMM  + NS    YM     S+Y  SI +T KG D++  +I + 
Sbjct: 742 NNLSGSLPTGYFNSFKAMMASDQNSF---YMMARNYSDYAYSIKVTWKGFDIEFTKIQSA 798

Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819
              +DLS+N F  +I +V+GKL +++ LN+SHN+LTG I SS+  LT+LESLDLSSN L 
Sbjct: 799 LRILDLSNNNFIGEISKVIGKLKAIQQLNLSHNSLTGHIQSSIGMLTDLESLDLSSNFLT 858

Query: 820 GRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDE 879
           GRIP QLA L +L VLNLS+NQLEGPIP   QFNTF   S+ GN GLCG P+ K C+ D+
Sbjct: 859 GRIPVQLADLTFLGVLNLSHNQLEGPIPSRNQFNTFNASSFEGNLGLCGLPMPKECNSDD 918

Query: 880 APEPTTPTGFIEGDDASSW---FDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIE 936
           AP P  P+ F +GDD++ +   F WK   +GY SG V G+++GY+ F TR P WF++++E
Sbjct: 919 AP-PLQPSNFHDGDDSAFFGDGFGWKAVAIGYGSGFVFGVTMGYVVFRTRKPAWFLKVVE 977

Query: 937 RKQSRKLRRVIRRGR--ASRR 955
            + + K RR  +  R   +RR
Sbjct: 978 DQWNLKARRTKKNARRNGARR 998

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	957
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.933	0.933	0.375	1.7e-139
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.899	0.963	0.371	1.2e-129
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.846	0.858	0.362	6.4e-115
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.774	0.846	0.369	2.3e-110
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.863	0.810	0.350	7.8e-110
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.766	0.866	0.357	1.1e-108
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.853	0.831	0.338	5.8e-105
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.869	0.837	0.338	1.3e-102
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.806	0.893	0.334	3e-101
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.821	0.883	0.328	7.9e-101

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
 Identities = 352/938 (37%), Positives = 493/938 (52%)

Query:    27 LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATG 86
             LC  +Q  ALL FK  F   K S   C+I+   S  K  SW  ++DCC+W+GVTC++ +G
Sbjct:    36 LCRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSG 95

Query:    87 HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
              VI LDLSCS LHG   SNSS+  L  L  L+L+FNDF G   SS   +    LT LDL 
Sbjct:    96 EVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQITSS--IENLSHLTYLDLS 153

Query:   147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPAS 206
             S +F+G I  S+GN +++L YL+L  N F G  PSS  NL  L  LDL  N F G+ P+S
Sbjct:   154 SNHFSGQILNSIGN-LSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSS 212

Query:   207 LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266
             +G  ++ L  L L SN FSG IPSS  NL  L  LDL +N+F G+IP+ +GN ++QL +L
Sbjct:   213 IGG-LSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGN-LSQLTFL 270

Query:   267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
              L SN F G IPSSF NL QL  L ++ N   G  P++  NLT LS L L+ N+  G++P
Sbjct:   271 GLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLP 330

Query:   327 SSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFP-NL 385
              +I  L NL +   S + F+G+     F                   T    N S P NL
Sbjct:   331 PNITSLSNLMDFDASDNAFTGTFP--SFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNL 388

Query:   386 SALDLSACN-ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR-NF 443
               LD+   N I   P ++    +L  LD+S     G +   ++   + +L++L++S  N 
Sbjct:   389 YELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFS-HLKSLLDLNISHLNT 447

Query:   444 LTSID---HLPW-KNLEYLHLDSNSL----QGSLPDLPPHMV-SFSISNNSLTGEIPSSF 494
              T ID    L + K L  L L  N +    + S+ D P  ++ S  +S   +T E P   
Sbjct:   448 TTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGIT-EFPEFV 506

Query:   495 CNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
                  + +LD+SNN + GQ+P  L     L  ++L  N   G   + +     L YL  S
Sbjct:   507 RTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIG-FQRPSKPEPSLLYLLGS 565

Query:   554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQT 611
              N+  G +P  +     L  LD+ +NN +G IP C+G+  STL VL++R N+ SG LP+ 
Sbjct:   566 NNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQ 625

Query:   612 FAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXX 671
               +  +L SL++  N+L G LP SL     LEVL+V +N+I+DTFP+W            
Sbjct:   626 IFE--ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVL 683

Query:   672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM--MHGNNNSVEVGY 729
             RSN F GPI +      FP+LRI+D SHN+  G LP  Y   + AM  +  N +     Y
Sbjct:   684 RSNAFHGPIHEAT----FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKY 739

Query:   730 MRLPGSSNYYE-SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLN 788
             M   GS  YY+ S+ L  KG+ +++ RILT +  +D S NRF+ +IP+ +G L  L  L+
Sbjct:   740 M---GSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLS 796

Query:   789 ISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPG 848
             +S+N  +G +PSS+ NLT LESLD+S NKL G IP +                  G +PG
Sbjct:   797 LSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPG 856

Query:   849 GPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEP----TTPTGFIEGDDASSWFDWKLA 904
             G QF T    ++  N GL G  L + C     P       TP    E +D  SW     A
Sbjct:   857 GQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPETEEEDEDLISWI---AA 913

Query:   905 KLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRK 942
              +G+  G+  GL  GY+  V+  P+WF+   +R   R+
Sbjct:   914 AIGFGPGIAFGLMFGYI-LVSYKPEWFMNPFDRNNRRQ 950

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 336/904 (37%), Positives = 459/904 (50%)

Query:    60 SRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNL 119
             S  K  SW  ++DCC+W+GVTC++ +G VI L+LSCS LHG   SNSS+  L  L  L+ 
Sbjct:     6 SHRKTESWGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDR 65

Query:   120 AFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI 179
             + NDF G   SS   +    LT LDL    F+G I  S+GN +++L  LDLS N F G I
Sbjct:    66 SHNDFEGQITSS--IENLSHLTSLDLSYNRFSGQILNSIGN-LSRLTSLDLSFNQFSGQI 122

Query:   180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC 239
             PSS  NL  L  L L  N F G+IP+S+GN ++ L +L LS N F G  PSS   L  L 
Sbjct:   123 PSSIGNLSHLTFLGLSGNRFFGQIPSSIGN-LSHLTFLGLSGNRFFGQFPSSIGGLSNLT 181

Query:   240 YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299
              L L  N + G+IP+S+GN ++QL  L LS N F G IPSSF NL QL  L++ +N   G
Sbjct:   182 NLHLSYNKYSGQIPSSIGN-LSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGG 240

Query:   300 KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXX 359
               P++  NLT LS + L+ N+  G++P +I  L NL   Y S + F+G+     F     
Sbjct:   241 NFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFP--SFLFIIP 298

Query:   360 XXXXXXXXXXXXXXTKLTANSSFP-NLSALDLSACN-ISEFPDNLRTQHQLELLDLSENQ 417
                           T    N S P NL  L++ + N I   P ++     L+ L +S   
Sbjct:   299 SLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLN 358

Query:   418 IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH---LPW-KNLEYLHLDSNSL----QGSL 469
                R   +     + +L +L LS    T+ID    LP+ K L  L L  N +    + S+
Sbjct:   359 TQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSV 418

Query:   470 PDLPPH--MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETL 526
                PP   + S  +S   +T + P        + +LD+SNN + GQ+P  L     L  L
Sbjct:   419 SSDPPSQSIQSLYLSGCGIT-DFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYL 477

Query:   527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
             +L  N F G    T  +   + YL  S N+  G +P  +     L  LD+ +NN SG IP
Sbjct:   478 NLSNNTFIGFQRPTKPEP-SMAYLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSGSIP 536

Query:   587 ECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV 644
              C+ N  S L  L++R NN SG  P+   +S  L SL++  N+L G LP SL     LEV
Sbjct:   537 RCMENLKSNLSELNLRQNNLSGGFPEHIFES--LRSLDVGHNQLVGKLPRSLRFFSNLEV 594

Query:   645 LDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTG 704
             L+V +N+I+D FP+W            RSN F GPI        FPKLRI+D SHN   G
Sbjct:   595 LNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPINQAL----FPKLRIIDISHNHFNG 650

Query:   705 VLPLWYLESFKAMMH-GN-NNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFAT 762
              LP  Y   +  M   G   +   V Y+   GS  Y +S+ L  KG++ ++ RILT +  
Sbjct:   651 SLPTEYFVEWSRMSSLGTYEDGSNVNYL---GSGYYQDSMVLMNKGVESELVRILTIYTA 707

Query:   763 IDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRI 822
             +D S N+F+ +IP+ +G L  L  LN+S+N  TG IPSS+ NLT LESLD+S NKL G I
Sbjct:   708 VDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEI 767

Query:   823 PTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPE 882
             P +                  G +PGG QF T    S+ GN GL G  L + C     P 
Sbjct:   768 PQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPA 827

Query:   883 P----TTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERK 938
                   TP    E +D  SW     A +G+  G+  GL  GY+  V+  P+WF+    R 
Sbjct:   828 SHQQFETPQTEEEDEDLISWI---AAAIGFGPGIAFGLMFGYI-LVSYKPEWFMNPFGRN 883

Query:   939 QSRK 942
               R+
Sbjct:   884 NRRR 887

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 309/852 (36%), Positives = 438/852 (51%)

Query:   116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSF 175
             +L+L+ +   GS  S+    +  +L +LDL   +  G IP S+GN ++ L  L LS N F
Sbjct:   103 ELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGN-LSHLTSLHLSYNQF 161

Query:   176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
             +G IPSS  NL +L  L L SN F G+IP+S+GN ++ L  L+LSSN FSG IPSS  NL
Sbjct:   162 LGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGN-LSHLTSLELSSNQFSGQIPSSIGNL 220

Query:   236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
               L +L L  N F G+IP+S+GN + +L YL LS N F G IPSSF NL QL+ L ++ N
Sbjct:   221 SNLTFLSLPSNDFFGQIPSSIGN-LARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSN 279

Query:   296 NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFA 355
                G +P    NLT+LS L L++N+  G+IP++I  L NL +   S + F+G++    F 
Sbjct:   280 KLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLF- 338

Query:   356 XXXXXXXXXXXXXXXXXXTKLTANSSFP-NLSALDLSACN-ISEFPDNLRTQHQLELLDL 413
                               T    N S P NL  L + + N I   P +L     L L DL
Sbjct:   339 -NIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDL 397

Query:   414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH---LPW-KNLEYLHLDSNSL---- 465
             S      R   +     + +L +L LS    T+ID    LP+ K L  L +  N +    
Sbjct:   398 SHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATN 457

Query:   466 QGSLPDLPPH--MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-ST 522
             + S+   PP   + S  +S   +T + P        + +LD+SNN + GQ+P  L     
Sbjct:   458 KSSVSSDPPSQSIQSLYLSGCGIT-DFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPN 516

Query:   523 LETLDLRMN---NFQGSIPQ---TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
             L  L+L  N   +F+ S  +   ++ +   + +L  S N+  G +P  +     L  LD+
Sbjct:   517 LFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLDL 576

Query:   577 GNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
               NN +G IP C+    STL VL++R NN SG LP+   +S  L SL++  N L G LP 
Sbjct:   577 SENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFES--LRSLDVGHNLLVGKLPR 634

Query:   635 SLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRI 694
             SL+    LEVL+V +N+I+DTFP+W            RSN F GPI +      FP+LRI
Sbjct:   635 SLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEAT----FPELRI 690

Query:   695 MDCSHNQLTGVLPLWYLESFKAM--MHGNNNSVEVGYMRLPGSSNYYE-SIFLTMKGIDL 751
             +D SHN   G LP  Y   + AM  +  N +     YM   GS  YY+ S+ L  KG+ +
Sbjct:   691 IDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---GSGLYYQDSMVLMNKGLAM 747

Query:   752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESL 811
             ++ RILT +  +D S N+F+ +IP+ +G L  L  LN+S+N   G IPSS+ NLT LESL
Sbjct:   748 ELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESL 807

Query:   812 DLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPL 871
             D+S NKL G IP +                  G +PGG QF      ++  N GL G  L
Sbjct:   808 DVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSL 867

Query:   872 SKSCSIDEAP-EPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQW 930
              + C     P      T   E +D      W  A +G+  G+V GL+IGY+  V+  P+W
Sbjct:   868 DEVCRDKHTPASQQNETTETEEEDEEE-ISWIAAAIGFIPGIVFGLTIGYI-LVSYKPEW 925

Query:   931 FVRMIERKQSRK 942
             F+    R   R+
Sbjct:   926 FMNPFGRNNRRR 937

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 289/783 (36%), Positives = 410/783 (52%)

Query:   181 SSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240
             S   N H L  LDL  N+  G+I +S+GN ++ L  LDLS N+FSG IPSS  NL  L  
Sbjct:   105 SMLQNFHFLTTLDLSYNHLSGQISSSIGN-LSHLTTLDLSGNNFSGWIPSSLGNLFHLTS 163

Query:   241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
             L L DN+F GEIP+SLGN ++ L +LDLS+N F G IPSSF +L QL  L L+ N   G 
Sbjct:   164 LHLYDNNFGGEIPSSLGN-LSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGN 222

Query:   301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXX 360
             +P    NLT+LS + L++N+  G++P +I  L  L     S +NF G++    F      
Sbjct:   223 LPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSIT 282

Query:   361 XXXXXXXXXXXXXTKLTANSSFP-NLSALDLSACNI-SEFPDNLRTQHQLELLDLSENQI 418
                          T    N S P NL  L L   N+    P ++     L  LDLS   I
Sbjct:   283 LIFLDNNQLSG--TLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNI 340

Query:   419 GGRIPSWMWDIGVHTLIELDLSR-NFLTSIDHLP----WKNLEYLHLDSNSL----QGSL 469
              G++   ++   +  L  L LS  N  T+ID       +K L  L L  N +    + S+
Sbjct:   341 QGQVDFNIFS-HLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSV 399

Query:   470 PDLPPHMV-SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
              D P  ++ S ++S   +T E P        ++ LD+SNN + GQ+P  L    LE + +
Sbjct:   400 SDPPLGLIGSLNLSGCGIT-EFPDILRTQRQMRTLDISNNKIKGQVPSWL-LLQLEYMHI 457

Query:   529 RMNNFQG-----SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
               NNF G      + +T      + +   S N+  G +P  + +   L  LD+ NNN SG
Sbjct:   458 SNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSG 517

Query:   584 QIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQY 641
              IP C+G   STL  L++R N  SGSLP+T  KS  L SL+++ N L+G LP SL++   
Sbjct:   518 AIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSHNELEGKLPRSLIHFST 575

Query:   642 LEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQ 701
             LEVL+V +N+I+DTFP+W            RSN F G I   KTR  FPKLRI+D S N 
Sbjct:   576 LEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIH--KTR--FPKLRIIDISRNH 631

Query:   702 LTGVLPLWYLESFKAM--MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTT 759
               G LP      +  M  +  N +     YM   GS  Y++S+ L  KG+++++ RIL  
Sbjct:   632 FNGTLPSDCFVEWTGMHSLEKNEDRFNEKYM---GSGYYHDSMVLMNKGLEMELVRILKI 688

Query:   760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819
             +  +D S N+F+ +IP  +G L  L  LN+S N  TG IPSS+ NL ELESLD+S NKL+
Sbjct:   689 YTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLS 748

Query:   820 GRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDE 879
             G IP +                  G +PGG QF T    S+  N GLCG PL + C +  
Sbjct:   749 GEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE-CRVVH 807

Query:   880 APEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQ 939
              P P+  +  +E +   SW     A +G+  G+V+GL+IG++   ++ P+WF +++    
Sbjct:   808 EPTPSGESETLESEQVLSWI---AAAIGFTPGIVLGLTIGHIVLSSK-PRWFFKVLYINN 863

Query:   940 SRK 942
             SR+
Sbjct:   864 SRR 866

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 310/885 (35%), Positives = 449/885 (50%)

Query:    82 DSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSK------ISSGFTD 135
             D  TG +  LDLS S L G IP N  L  L +L  L+L+ +DF G +      I   F  
Sbjct:   164 DKLTG-LERLDLSQSSLSGQIPIN--LLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLP 220

Query:   136 ----QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191
                    +L  LD+     +  IP    +NI  L  L+L+  +  G  PSS   +  L+ 
Sbjct:   221 LLARNLRNLRELDMSYVKISSEIPEEF-SNIRSLRSLNLNGCNLFGEFPSSILLIPNLQS 279

Query:   192 LDLQSN-NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250
             +DL +N N  G +P    NN   L  L +   SFSG IP S S+L+ L  L L  ++F G
Sbjct:   280 IDLGNNPNLRGNLPVFHENN--SLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSG 337

Query:   251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
             +IP SLGN ++ L++L LSSN   G IPSS  NL QL    +  N   G +P   +NLT+
Sbjct:   338 KIPFSLGN-LSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLTK 396

Query:   311 LSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXX 370
             L+ + L+ N+  GS+P SI +L  L   +   + F G++                     
Sbjct:   397 LNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAI--------------LSPLLKI 442

Query:   371 XXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
                T++  + S+  L+ L +   NI   P NL T +           +   + S +  +G
Sbjct:   443 PSLTRI--HLSYNQLNDL-VGIENIFMLP-NLETFYIYHYNYTKVRPLDLNVFSSLKQLG 498

Query:   431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
                +  + +S   +TS D  P  NLEYL L S ++    P+      ++    +SNN + 
Sbjct:   499 TLYISRIPISTTNITS-D-FP-SNLEYLSLRSCNIT-DFPEFIRKGRNLQILDLSNNKIK 554

Query:   488 GEIPSSFCNLSSIQYLDLSNNSLSG-QIP-QCLGNSTLETLDLRMNNFQGSIPQTNAKGC 545
             G++P     + ++  +DLSNNSLSG  +  +    S L ++DL  N FQG +   +    
Sbjct:   555 GQVPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKS-- 612

Query:   546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN--STLQVLDMRMNN 603
              L Y   S N+  G +P S+     L+ LD+ NNNL+G +P CL    S+L  LD+R N+
Sbjct:   613 -LRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNS 671

Query:   604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXX 663
              SGSLP+ F  +  L SL+++ NR++G LP SL  C  LEVL+VG+N+I+D FP+     
Sbjct:   672 LSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSL 731

Query:   664 XXXXXXXXRSNRFWGPIGDTK-TRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNN 722
                      SN+F G + +       FP+L+I+D SHN   G+LP  Y  ++ AM    +
Sbjct:   732 QKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKD 791

Query:   723 NSVEVGYMRLP---GSS-NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV 778
             N++E  Y++ P   GSS  YY S+ L  KG+ ++MER+LT +  IDLS N+   KIP+ +
Sbjct:   792 NNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSI 851

Query:   779 GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXX 838
             G L  L+ LN+S N  TG IPSSL NL  LESLD+S N ++G IP +             
Sbjct:   852 GLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVS 911

Query:   839 XXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCS-IDEA-PEPTTPTGFIEGDDAS 896
                  G IP G QF      SY GN GL G  L   C  I E+ P  T P    E ++  
Sbjct:   912 HNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEE 971

Query:   897 SWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSR 941
             S F W  A LG+A GVV GL++GY+  V+   QWF++   R + +
Sbjct:   972 S-FSWIAAGLGFAPGVVFGLAMGYIV-VSYKHQWFMKTFGRSKQQ 1014

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 278/778 (35%), Positives = 403/778 (51%)

Query:   188 QLRHLDLQS---NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLD 244
             Q+  LD+ +   NN++ K  +SL   +  L +LDL++ +  G IPSS  NL  L  ++L 
Sbjct:    85 QVISLDIPNTFLNNYL-KTNSSLFK-LQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLY 142

Query:   245 DNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM 304
              N FVGEIPAS+GN + QL +L L++N  +G IPSS  NL +L+ L L  N  VGKIPD 
Sbjct:   143 FNKFVGEIPASIGN-LNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDS 201

Query:   305 FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXX 364
               +L QL  L LA N LIG IPSS+  L NL  + L+ +   G V               
Sbjct:   202 IGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVP-------ASIGNLI 254

Query:   365 XXXXXXXXXTKLTANS--SFPNLSALD---LSACNI-SEFPDNLRTQHQLELLDLSENQI 418
                        L+ N   SF NL+ L    LS+ N  S FP ++   H LE  D+S N  
Sbjct:   255 ELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSF 314

Query:   419 GGRIPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKN---LEYLHLDSNSLQGSLPDLPP 474
              G  P  +  + + +L  + L  N  T  I+     +   L+ L L  N L G +P+   
Sbjct:   315 SGPFPKSL--LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESIS 372

Query:   475 HMVSFS---ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMN 531
              +++     IS+N+ TG IP +   L ++ +LDLS N+L G++P CL    L T+ L  N
Sbjct:   373 RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR--LNTMVLSHN 430

Query:   532 NFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN 591
             +F  S   T+ +   +  L L+ N  +GP+P  +     L FLD+ NN  SG IP C+ N
Sbjct:   431 SFS-SFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRN 489

Query:   592 --STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649
                +++ L++  NNFSG+LP  F+K+  LVSL+++ N+L+G  P SL+NC+ LE+++V +
Sbjct:   490 FSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVES 549

Query:   650 NQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW 709
             N+I D FP W            RSN+F+GP+      + F  LRI+D SHN  +G LP +
Sbjct:   550 NKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPY 609

Query:   710 YLESFKAM--MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS 767
             Y  ++K M  +    +     + R   S  YY  + +  KG+D+  ERI   F  ID S 
Sbjct:   610 YFSNWKDMTTLTEEMDQYMTEFWRYADS--YYHEMEMVNKGVDMSFERIRRDFRAIDFSG 667

Query:   768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXX 827
             N+    IPE +G L  L+ LN+S N  T  IP  L NLT+LE+LD+S NKL+G+IP    
Sbjct:   668 NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query:   828 XXXXXXXXXXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTT-- 885
                            +GP+P G QF      S+  N GL G  L   C    A  PT+  
Sbjct:   728 ALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQL 785

Query:   886 PTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKL 943
             P    E ++  + F+W  A + Y  GV+ GL IG+  + +   +WF     RKQ + L
Sbjct:   786 PEDLSEAEE--NMFNWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWFTEKFGRKQHKAL 840

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 296/874 (33%), Positives = 430/874 (49%)

Query:    91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS-GFTDQFPSLTLLDLCSCN 149
             LDLS +   G IPS  S+  L  L  ++ + N+F+G   SS G+      LT  +L   N
Sbjct:   141 LDLSRNHFSGRIPS--SIGNLSHLIFVDFSHNNFSGQIPSSLGYLSH---LTSFNLSYNN 195

Query:   150 FTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
             F+G +P S+GN ++ L  L LS NSF G +PSS  +L  L  L L +N+FVGKIP+SLGN
Sbjct:   196 FSGRVPSSIGN-LSYLTTLRLSRNSFFGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGN 254

Query:   210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
              ++ L  +DL  N+F G IP S  NL  L    L DN+ VGEIP+S GN + QL  L++ 
Sbjct:   255 -LSHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGN-LNQLDILNVK 312

Query:   270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
             SN  SG  P +  NL++L  L+L  N   G +P   ++L+ L       N   G +PSS+
Sbjct:   313 SNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSL 372

Query:   330 FELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALD 389
             F + +L  I L  +  +GS+   + +                     +  S   NL  LD
Sbjct:   373 FNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSI-SKLVNLKELD 431

Query:   390 LSACNISEFPDNLRTQH--QLELLDLSENQIGGRIPSWMWDI-GVHTLIE-LDLSRNFLT 445
             LS  N     D     H   +E L+LS       I   M++I     L++ LDLS + ++
Sbjct:   432 LSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTID--MYEILSSFKLLDTLDLSGSHVS 489

Query:   446 SIDHLPWKNLEYLHLDSNSLQG-SLPDLPPH------MVSFSISNNSLTGEIPSSFCNLS 498
             + +     N   + +    L G  + + P        M++  ISNN + G++P     L 
Sbjct:   490 TTNKSSLSNSSLVLISQLYLSGCGITEFPKFLRSQELMLTLDISNNKIKGQVPGWLWMLP 549

Query:   499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE 558
              + Y++LSNN+  G        ST   L L       SI +  A    +  L  S N+  
Sbjct:   550 VLNYVNLSNNTFIG-----FERST--KLGLT------SIQEPPA----MRQLFCSNNNFT 592

Query:   559 GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST---LQVLDMRMNNFSGSLPQTFAKS 615
             G +P  +     L  LD  NN  +G IP C+GN     LQ L++R N  SG LP+   +S
Sbjct:   593 GNIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENIFES 652

Query:   616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNR 675
               L+SL++  N+L G LP SL +   L +L+V +N+I DTFP W            RSN 
Sbjct:   653 --LISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSNA 710

Query:   676 FWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMM-----HGNNNSVEVGYM 730
             F+GPI  T+    F KLRI+D S NQ  G LP  +  ++ AM         +N   +  M
Sbjct:   711 FYGPIEKTQ----FSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNM 766

Query:   731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNIS 790
              +     Y++S+ L  KG+++++ER+L  F  ID S N+F+ +IP+ +G L  L  LN+S
Sbjct:   767 YMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLS 826

Query:   791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGP 850
             +N L+G I SS+ NL  LESLD+S NKL+G IP +                  G +PGG 
Sbjct:   827 NNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGT 886

Query:   851 QFNTFGNDSYSGNSGLCGFPLSKSCSID-EAPEPTTPTGFIEGDDASSWFDWKLAKLGYA 909
             QF T    S+  N GL G  L K C I  + P+ +      E +D      W  A +G+ 
Sbjct:   887 QFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPE-EDEEEVISWIAAVIGFI 945

Query:   910 SGVVIGLSIGYMAFVTRGPQWFVRMIERKQSRKL 943
              G  +GL+ G + F  + P WF     R + R +
Sbjct:   946 LGTALGLTFGCILFSYK-PDWFKNPFVRDKRRNI 978

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 301/889 (33%), Positives = 429/889 (48%)

Query:    87 HVIGLDLSCS-WLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDL 145
             H+  ++L+ + + +  IP+  S F   RL +LNL+ + F+G  IS     Q  +L  LDL
Sbjct:   124 HLQSVNLAYNNFTNSPIPAEFSKFM--RLERLNLSRSSFSGH-ISIKLL-QLTNLVSLDL 179

Query:   146 CSCNFTGSIPPSLGN-----------NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
              S +F  S P SL             N   L  LD+S       IP  FS +  LR L L
Sbjct:   180 SS-SFPYS-PSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEFSYMWSLRSLTL 237

Query:   195 QSNNFVGKIPASLGNNITQLAYLDLSSN-SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
             +  N +G+ P S+   I  L  + L  N +  G +P+   N   L  L + +  F G IP
Sbjct:   238 KGCNLLGRFPNSV-LLIPNLESISLDHNLNLEGSLPNFLRN-NSLLKLSIYNTSFSGTIP 295

Query:   254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
              S+ +N+  L  L L  + FSG IPSS  +L  L  L L  NNFVG+IP   +NL QL+ 
Sbjct:   296 NSI-SNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTL 354

Query:   314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXX 373
               ++ N L G+ PSS+  L  L  I +  ++F+G +                        
Sbjct:   355 FDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLP----PTISQLSNLEFFSACDNSF 410

Query:   374 TKLTANSSFPNLSALDLSACNISEFPD-----NLRTQHQLELLDLSENQIGGRIPSWMWD 428
             T    +S F N+S+L     + ++  D     N+   H L+ L L  N            
Sbjct:   411 TGSIPSSLF-NISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLDVF 469

Query:   429 IGVHTLIELDLSRNFL--TSI--DHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSI 481
             + +  L+ L LS   L  T+I  D     +LEYL L   ++    P+      ++ S  +
Sbjct:   470 LSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNII-EFPEFIRNQRNLSSIDL 528

Query:   482 SNNSLTGEIPSSFCNLSSIQYLDLSNNSL---SGQIPQCLGNSTLETLDLRMNNFQGSIP 538
             SNN++ G++P+    L  +  +DLSNNSL   +G + + L  S +  LDL  N FQG + 
Sbjct:   529 SNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGSL-KALSGSKIVMLDLSSNAFQGPLF 587

Query:   539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN--STLQV 596
                 +G  + Y   S N+  G +PPS+        LD+ NNNL G IP CL    S+L V
Sbjct:   588 MP-PRG--IQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEAQMSSLSV 644

Query:   597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTF 656
             L++R N+  GSLP  F  + VL SL+++ N L+G LP SL  C  LE+L+V +N I+DTF
Sbjct:   645 LNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTF 704

Query:   657 PYWXXXXXXXXXXXXRSNRFWGPIGDTK-TRVPFPKLRIMDCSHNQLTGVLPLWYLESFK 715
             P+W            RSN F G + +       FP LRI D SHN   G LP  Y  ++ 
Sbjct:   705 PFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWT 764

Query:   716 AMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIP 775
             A+   + +  E+ Y+  P    YY S+ L  KG+ ++M+RILT +  ID + N+ Q KIP
Sbjct:   765 AI---SKSETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIP 821

Query:   776 EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXX 835
             E VG L  L  LN+S N  TG IPSSL NLT LESLD+S NK+ G IP +          
Sbjct:   822 ESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWI 881

Query:   836 XXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEP---TTPTGFIEG 892
                     G IP G QF+     SY GN G+ G  L   C    AP P     P      
Sbjct:   882 NVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSS 941

Query:   893 DDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERKQSR 941
              +      W  A LG+A G+V GL++GY+   +   +WF+    R++ R
Sbjct:   942 SEEDELISWIAACLGFAPGMVFGLTMGYI-MTSHKHEWFMDTFGRRKGR 989

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 281/841 (33%), Positives = 426/841 (50%)

Query:   122 NDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSFIG-HI 179
             +DFNG    +  T    ++T+L L  C  +G++  +       QL YL L+ N+F    +
Sbjct:    64 DDFNGVWCDNS-TG---AVTVLQLRDC-LSGTLKSNSSLFGFHQLRYLALNRNNFTSASL 118

Query:   180 PSSFSNLHQLRHLDLQSNNFV--------GKIPASLGNNITQLAYLDLSSNSFSGHI-PS 230
             PS F NL++L+ L L SN F+        G  P  L  N+ +LA LDLS N FSG + P+
Sbjct:   119 PSEFCNLNKLKLLSLFSNGFIDLSHNDLMGSFP--LVRNLGKLAVLDLSDNHFSGTLNPN 176

Query:   231 -SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
              S   L  L YL+L  N+    +P+  GN + +L  L LS NGFSG    + SNL ++  
Sbjct:   177 NSLFELHSLRYLNLAFNNISSSLPSKFGN-LNKLEVLSLSFNGFSGQCFPTISNLTRITQ 235

Query:   290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349
             L L  N   G  P +  NLT+LSFLGL+ N   G+IPS +F   +L+ + L  ++ SGS+
Sbjct:   236 LYLHNNELTGSFP-LVQNLTKLSFLGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSI 294

Query:   350 ELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE 409
             E+ + +                    L   S   NL  LDLS  N S +P +L     L+
Sbjct:   295 EVPNSSTSSKLEIMYLGFNHLEGKI-LEPISKLINLKRLDLSFLNTS-YPIDLNLLSPLK 352

Query:   410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSL 469
              L            S++ D   ++L    LS     S  ++P  ++E + L    ++   
Sbjct:   353 SL------------SYL-DFSGNSLSPASLS-----SSSYIPL-SMESIVLSLCGIR-EF 392

Query:   470 PDLPPHM---VSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG-Q-IPQCLGNSTLE 524
             P++  H+   +   I++N + G+IP     L  + ++D+SNNS +G Q   +   N ++ 
Sbjct:   393 PNILKHLQNLIHIDITSNQIKGKIPEWLWTLPQLSFVDISNNSFNGFQGSAEVFVNLSVR 452

Query:   525 TLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNH--LEGPLPPSLTNCVKLQFLDVGNNNLS 582
              L L  NNF+G++P        L+ +  S  H    G +P S+ N   L  +D+  NN +
Sbjct:   453 ILMLDANNFEGALPTL-----PLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSYNNFT 507

Query:   583 GQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
             G IP+CL N     +++R N+  GS+P TF     L SL++  NRL G LP SL+NC  L
Sbjct:   508 GPIPQCLSN--FMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSL 565

Query:   643 EVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDT-KTRVPFPKLRIMDCSHNQ 701
               L V NN++ DTFP+W            RSN+F+GPI    +  + FP+LRI + + N 
Sbjct:   566 RFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNM 625

Query:   702 LTGVLPLWYLESFKA--MMHGNNNSVEVGY-----MRLPGSSNYYESIFLTMKGIDLQME 754
              TG LP  +  ++KA  +    +  + + Y        P    Y ++I L  KG+ ++ E
Sbjct:   626 FTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANSPVRYTYTDTIDLQYKGLHMEQE 685

Query:   755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
             R+LT++A ID S NR Q +IPE +G L +L +LN+S+N  TG IP S  NL  LESLD+S
Sbjct:   686 RVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMS 745

Query:   815 SNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKS 874
              N+L+G IP                   +G IP G Q       S+ GN+GLCG PL ++
Sbjct:   746 GNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQET 805

Query:   875 CSIDEAPEPTTPTGFIEGDDASSWFDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRM 934
             C  D +  P  P    E ++     +WK   +GYA G++ GL+I ++   +  P+W V++
Sbjct:   806 C-FDSSVPPIQPKQ--EDEEKGEVINWKAVAIGYAPGLLFGLAIAHL-IASYKPEWLVKI 861

Query:   935 I 935
             I
Sbjct:   862 I 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 269/820 (32%), Positives = 428/820 (52%)

Query:   139 SLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSFIGH-IPSSFSNLHQLRHLDLQS 196
             ++T+L L +C  +G++ P+        L  L L  N+F    I S F  L+ L  L L S
Sbjct:    74 AVTMLQLRAC-LSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSS 132

Query:   197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI-PAS 255
             + F+ ++P S  +N++ L+ LDLS N  +G + S   NL++L  LD+  NHF G + P S
Sbjct:   133 SGFLAQVPFSF-SNLSMLSALDLSKNELTGSL-SFVRNLRKLRVLDVSYNHFSGILNPNS 190

Query:   256 LGNNITQLAYLDLSSNGF-SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                 +  L YL+L  N F S  +P  F NL +L  L++  N+F G++P   +NLTQL+ L
Sbjct:   191 SLFELHHLIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTEL 250

Query:   315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXT 374
              L  N+  GS+P  +  L  L+ ++L  ++FSG++    F                    
Sbjct:   251 YLPLNDFTGSLPL-VQNLTKLSILHLFGNHFSGTIPSSLFTMPFLSSIYLNKNNLSGSI- 308

Query:   375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
             ++  +SS   L  L L   ++ +  + +     L+ LDLS       I   ++   + +L
Sbjct:   309 EVPNSSSSSRLEHLYLGKNHLGKILEPIAKLVNLKELDLSFLNTSHPIDLSLFS-SLKSL 367

Query:   435 IELDLSRNFLT----SID-HLPWKNLEYLHLDSNSLQGSLPDL--PPHMVSF-SISNNSL 486
             + LDLS ++++    ++D ++P   LE L L+   +    P++    H + + ++SNN +
Sbjct:   368 LLLDLSGDWISKASLTLDSYIP-STLEVLRLEHCDIS-EFPNVFKTLHNLEYIALSNNRI 425

Query:   487 TGEIPSSFCNLSSIQYLDLSNNSLSG--QIPQCLGNSTLETLDLRMNNFQGSIPQTNAKG 544
             +G+ P    +L  +  + +++N L+G     + L NS+++ L L  N+ +G++P      
Sbjct:   426 SGKFPEWLWSLPRLSSVFITDNLLTGFEGSSEVLVNSSVQILSLDTNSLEGALPHLPLS- 484

Query:   545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
               + Y     N   G +P S+ N   L  LD+  NN SGQIP CL N  L  L +R NN 
Sbjct:   485 --INYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFSGQIPPCLSN--LLYLKLRKNNL 540

Query:   605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXX 664
              GS+P  +     L S ++  NRL G LP SL+NC  L+ L V +N I DTFP++     
Sbjct:   541 EGSIPDKYYVDTPLRSFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYLKALP 600

Query:   665 XXXXXXXRSNRFWGPIGD-TKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNN 723
                     SN F+GP+    +  + FP+LRI++ + N+LTG LP  +  ++KA  H  N 
Sbjct:   601 KLQVLLLSSNEFYGPLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSHTMNE 660

Query:   724 SVEVG--YMRLP-GSSN--YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV 778
              + +   Y ++  G+ +  YYE+I L  KG+ ++ E +LT+ ATIDLS NR + +IPE +
Sbjct:   661 DLGLYMVYSKVIFGNYHLTYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESL 720

Query:   779 GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXX 838
             G L +L +LN+S+N  TG IP SL NL ++ESLDLSSN+L+G IP               
Sbjct:   721 GLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVS 780

Query:   839 XXXXEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSW 898
                  G IP G Q       S+ GN+GLCGFPL +SC    AP    P    E ++    
Sbjct:   781 HNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDEQE 840

Query:   899 FDWKLAKLGYASGVVIGLSIGYMAFVTRGPQWFVRMIERK 938
              +WK   +GY  GV++GL+I  +   +  P+W V +++ +
Sbjct:   841 LNWKAVAIGYGVGVLLGLAIAQL-IASYKPEWLVCLVKSR 879

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.03240004 hypothetical protein (942 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	957
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-85
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-64
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  294 bits (753), Expect = 5e-85
 Identities = 206/588 (35%), Positives = 285/588 (48%), Gaps = 65/588 (11%)

Query: 66  SWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFN 125
           +W   AD C W G+TC++++  V+ +DLS   + G I   SS  F               
Sbjct: 50  NWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKI---SSAIF--------------- 90

Query: 126 GSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSN 185
                     + P +  ++L +   +G IP  +    + L YL+LS N+F G IP     
Sbjct: 91  ----------RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS-- 138

Query: 186 LHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDD 245
           +  L  LDL +N   G+IP  +G+  + L  LDL  N   G IP+S +NL  L +L L  
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 246 NHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMF 305
           N  VG+IP  LG  +  L ++ L  N  SG IP     L  L  L+L YNN  G IP   
Sbjct: 198 NQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV-ELYDFAKLKNLKVLS 364
            NL  L +L L  N+L G IP SIF L  L  + LS ++ SG + EL    +L+NL++L 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILH 314

Query: 365 LSNISLSVSTKLT-----ANSSFPNLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQI 418
           L       S   T     A +S P L  L L +   S E P NL   + L +LDLS N +
Sbjct: 315 L------FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP-----WKNLEYLHLDSNSLQGSLPD-- 471
            G IP  +   G   L +L L  N L     +P      ++L  + L  NS  G LP   
Sbjct: 369 TGEIPEGLCSSG--NLFKLILFSNSLE--GEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 472 --LPPHMVSF-SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
             LP  +V F  ISNN+L G I S   ++ S+Q L L+ N   G +P   G+  LE LDL
Sbjct: 425 TKLP--LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482

Query: 529 RMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588
             N F G++P+      +L  L+LS N L G +P  L++C KL  LD+ +N LSGQIP  
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 589 LGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS 635
                 L  LD+  N  SG +P+       LV +N++ N L G LP +
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  234 bits (598), Expect = 3e-64
 Identities = 187/620 (30%), Positives = 288/620 (46%), Gaps = 85/620 (13%)

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGL 316
           NN +++  +DLS    SG I S+   L  +  +NL  N   G IP D+FT  + L +L L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
           + N   GSIP     + NL  + LS +  SG +   D     +LKVL L    L      
Sbjct: 126 SNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVL------ 176

Query: 377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
                             + + P++L     LE L L+ NQ+ G+IP  +  +       
Sbjct: 177 ------------------VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM------- 211

Query: 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS---ISNNSLTGEIPSS 493
                           K+L++++L  N+L G +P     + S +   +  N+LTG IPSS
Sbjct: 212 ----------------KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 494 FCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
             NL ++QYL L  N LSG IP  + +   L +LDL  N+  G IP+   +   L  L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG-NSTLQVLDMRMNNFSGSLPQT 611
             N+  G +P +LT+  +LQ L + +N  SG+IP+ LG ++ L VLD+  NN +G +P+ 
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 612 FAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLIL 671
              S  L  L L  N L+G +P SL  C+ L  + + +N      P     L  +  L +
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMR 731
            +N   G I   K  +P   L+++  + N+  G LP    +SF                 
Sbjct: 436 SNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLP----DSF----------------- 472

Query: 732 LPGSSNYYESIFLTMKGIDLQMERILTTFATI---DLSSNRFQRKIPEVVGKLNSLKSLN 788
             GS    E++ L+       + R L + + +    LS N+   +IP+ +     L SL+
Sbjct: 473 --GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 789 ISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
           +SHN L+G IP+S   +  L  LDLS N+L+G IP  L ++  L  +N+S+N L G +P 
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Query: 849 GPQFNTFGNDSYSGNSGLCG 868
              F      + +GN  LCG
Sbjct: 590 TGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.3 bits (211), Expect = 5e-17
 Identities = 52/151 (34%), Positives = 70/151 (46%), Gaps = 35/151 (23%)

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           IP  + KL  L+S+N+S N++ G IP SL ++T LE LDLS N   G IP  L  L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 834 VLNLSNNQLEGPIPG--------GPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTT 885
           +LNL+ N L G +P            FN      ++ N+GLCG P  ++C       P  
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLRACG------PHL 541

Query: 886 PTGFIEGDDASSWFDWKLAKLGYASGVVIGL 916
             G               AK+G A GV +  
Sbjct: 542 SVG---------------AKIGIAFGVSVAF 557

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 5e-15
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           L L      G IP+  S L  L+ ++L  N+  G IP SLG+ IT L  LDLS NSF+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
           IP S   L  L  L+L+ N   G +PA+LG  +   A  + + N
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 83/287 (28%), Positives = 120/287 (41%), Gaps = 13/287 (4%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
             ++  L L   + T  + PS  + +  L  L  S  S +     +  NL  L  LDL  
Sbjct: 44  SVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGS-ENLLNLLPLPSLDLNL 102

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
           N     I   L   +T L  LDL +N+ +   P        L  LDL DN  +  +P+ L
Sbjct: 103 NRLRSNISELL--ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL 159

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGL 316
             N+  L  LDLS N  S  +P   SNL  L  L+L  N     +P     L+ L  L L
Sbjct: 160 -RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDL 216

Query: 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
           + N +I  + SS+  L NL+ + LS +      E      L NL+ L LSN  +S    +
Sbjct: 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI--GNLSNLETLDLSNNQIS---SI 270

Query: 377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIP 423
           ++  S  NL  LDLS  ++S     +     L  L L+       + 
Sbjct: 271 SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 3e-12
 Identities = 53/152 (34%), Positives = 71/152 (46%), Gaps = 33/152 (21%)

Query: 76  WDGVTC--DSATGH--VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS 131
           W G  C  DS  G   + GL L    L G IP++ S   L  L+ +NL+ N         
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGN--------- 452

Query: 132 GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191
                            +  G+IPPSLG+ IT L  LDLS NSF G IP S   L  LR 
Sbjct: 453 -----------------SIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
           L+L  N+  G++PA+LG  +   A  + + N+
Sbjct: 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 4e-12
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 19/119 (15%)

Query: 458 LHLDSNSLQGSLPDLPP---HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQI 514
           L LD+  L+G +P+      H+ S ++S NS+ G IP S  +++S++ LDLS NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 515 PQCLGNST-LETLDLRMNNFQGSIPQT---------------NAKGCKLTYLRLSGNHL 557
           P+ LG  T L  L+L  N+  G +P                 NA  C +  LR  G HL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 541

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 81/280 (28%), Positives = 118/280 (42%), Gaps = 11/280 (3%)

Query: 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG-- 488
            +      ++ NF  S       N   L+L SN+L      L   ++S  + + S     
Sbjct: 25  TYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLS-RLLSLDLLSPSGISSL 83

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLT 548
           +   +  NL  +  LDL+ N L   I + L  + L +LDL  NN     P        L 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 549 YLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL 608
            L LS N +E  LP  L N   L+ LD+  N+LS         S L  LD+  N  S  L
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 609 PQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQV 668
           P        L  L+L+ N +   L  SL N + L  L++ NN+++D  P  +  L  L+ 
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLET 259

Query: 669 LILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
           L L +N+    I    +      LR +D S N L+  LPL
Sbjct: 260 LDLSNNQ----ISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-10
 Identities = 32/84 (38%), Positives = 47/84 (55%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           L L + G  G IP+  S L+ L  +NL  N+  G IP    ++T L  L L+YN   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 326 PSSIFELLNLTEIYLSFSNFSGSV 349
           P S+ +L +L  + L+ ++ SG V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-10
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 25/128 (19%)

Query: 480 SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIP 538
            + N  L G IP+    L  +Q ++LS NS+ G IP  LG+ ++LE LDL  N+F GSIP
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLD 598
           +                        SL     L+ L++  N+LSG++P  LG   L    
Sbjct: 484 E------------------------SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519

Query: 599 MRMNNFSG 606
               + +G
Sbjct: 520 FNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-10
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 519 GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578
           G   ++ L L     +G IP   +K   L  + LSGN + G +PPSL +   L+ LD+  
Sbjct: 416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 579 NNLSGQIPECLGNST-LQVLDMRMNNFSGSLP 609
           N+ +G IPE LG  T L++L++  N+ SG +P
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 68/289 (23%), Positives = 103/289 (35%), Gaps = 62/289 (21%)

Query: 383 PNLSALDLSACNISE-----FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT---- 433
             L  L L    + E         LR Q  L+ L LS N+ G         +   T    
Sbjct: 23  LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82

Query: 434 LIELDLSRNFLTSIDHLPWKN------LEYLHLDSNSL--------QGSLPDLPPHMVSF 479
           L ELDLS N L        ++      L+ L L++N L           L DLPP +   
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 480 SISNNSLTGE----IPSSFCNLSSIQYLDLSNNSLSGQIPQCLG-----NSTLETLDLRM 530
            +  N L G     +  +      ++ L+L+NN +     + L      N  LE LDL  
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL- 589
           N           +G            L   L    +    L+ L++G+NNL+      L 
Sbjct: 203 NGL-------TDEGASA---------LAETLA---SLK-SLEVLNLGDNNLTDAGAAALA 242

Query: 590 -----GNSTLQVLDMRMNNF----SGSLPQTFAKSCVLVSLNLNGNRLK 629
                 N +L  L +  N+     +  L +  A+   L+ L+L GN+  
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 8e-09
 Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 25/113 (22%)

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           L L +    G IP+  S L+ L  ++L  N   G IP SLG+ IT L  LDLS       
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLS------- 474

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
                            YN+F G IP+    LT L  L L  N L G +P+++
Sbjct: 475 -----------------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 60/250 (24%), Positives = 89/250 (35%), Gaps = 60/250 (24%)

Query: 431 VHTLIELDLSRNFLTSIDHLPW--------KNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482
           +  L  L L  N L   +             +L+ L L  N        L          
Sbjct: 22  LLCLQVLRLEGNTLGE-EAAKALASALRPQPSLKELCLSLNETGRIPRGL---------- 70

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLS----GQIPQCLGNSTLETLDLRMNNFQGSIP 538
                  +         +Q LDLS+N+L     G +   L +S+L+ L L  N       
Sbjct: 71  -----QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125

Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG-----NST 593
           +  AKG K              LPP+L        L +G N L G   E L      N  
Sbjct: 126 RLLAKGLK-------------DLPPALEK------LVLGRNRLEGASCEALAKALRANRD 166

Query: 594 LQVLDMRMNNFSG----SLPQTFAKSCVLVSLNLNGNRLK----GPLPPSLVNCQYLEVL 645
           L+ L++  N        +L +    +C L  L+LN N L       L  +L + + LEVL
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 646 DVGNNQIDDT 655
           ++G+N + D 
Sbjct: 227 NLGDNNLTDA 236

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 54.7 bits (131), Expect = 2e-07
 Identities = 91/362 (25%), Positives = 152/362 (41%), Gaps = 66/362 (18%)

Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-LPPHMVSFSISNNSLTGEIPSSF 494
           EL L    LT+I     + +  L LD+N L+ SLP+ L  ++ +   ++N LT  IP++ 
Sbjct: 182 ELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQGNIKTLYANSNQLT-SIPATL 239

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554
            +  +IQ ++LS N ++ ++P+ L  S L++LDL  N              K++      
Sbjct: 240 PD--TIQEMELSINRIT-ELPERL-PSALQSLDLFHN--------------KIS------ 275

Query: 555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAK 614
                 LP +L    +L++L V +N++   +P  L +    +     +N   +LP+T   
Sbjct: 276 -----CLPENLPE--ELRYLSVYDNSIRT-LPAHLPSGITHL--NVQSNSLTALPETLPP 325

Query: 615 SCVLVSLNLNG-NRLKGPLPPSLVNCQYLEVLDVGNNQID---DTFPYWLDVLLELQVLI 670
               +    N    L   LPP L      +VLDV  NQI    +T P        +  L 
Sbjct: 326 GLKTLEAGENALTSLPASLPPEL------QVLDVSKNQITVLPETLP------PTITTLD 373

Query: 671 LRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730
           +  N     + +    +P   L+IM  S N L   LP    ES             +   
Sbjct: 374 VSRN----ALTNLPENLP-AALQIMQASRNNLVR-LP----ESLPHFRGEGPQPTRIIVE 423

Query: 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV-GKLNSLKSLNI 789
             P S    +++   M  +  Q  R+L  FA  D S  R  R + + V G L +L+  ++
Sbjct: 424 YNPFSERTIQNMQRLMSSVGYQGPRVL--FAMGDFSIVRVTRPLHQAVQGWLTNLEEEDV 481

Query: 790 SH 791
           + 
Sbjct: 482 NQ 483

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 16/245 (6%)

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
           +PSS S L  L  L+    + +    ++  NL  L  L L  N L  +I S + EL NLT
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENL-LNLLPLPSLDLNLNRLRSNI-SELLELTNLT 119

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS 396
            + L  +N +    L    K  NLK L LS+  +   +  +   + PNL  LDLS  ++S
Sbjct: 120 SLDLDNNNITDIPPLIGLLK-SNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS 176

Query: 397 EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI-ELDLSRNFLTSID--HLPWK 453
           + P  L     L  LDLS N+I   +P    +I + + + ELDLS N +  +       K
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKI-SDLPP---EIELLSALEELDLSNNSIIELLSSLSNLK 232

Query: 454 NLEYLHLDSNSLQG--SLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           NL  L L +N L+          ++ +  +SNN ++    SS  +L++++ LDLS NSLS
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290

Query: 512 GQIPQ 516
             +P 
Sbjct: 291 NALPL 295

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 32/214 (14%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLG------NNITQLAYLDLSINSFIGHIPSSFSNLHQ--- 188
           PSL  L L   N TG IP  L            L  LDLS N+          +L +   
Sbjct: 51  PSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109

Query: 189 LRHLDLQSNNFVGK-----IPASLGNNITQLAYLDLSSNSFSGH----IPSSFSNLQQLC 239
           L+ L L +NN +G      +   L +    L  L L  N   G     +  +    + L 
Sbjct: 110 LQELKL-NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168

Query: 240 YLDLDDNHFVGEIPASLGNNI---TQLAYLDLSSNGF----SGHIPSSFSNLQQLLWLNL 292
            L+L +N        +L   +     L  LDL++NG     +  +  + ++L+ L  LNL
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 293 EYNNFVGKI-----PDMFTNLTQLSFLGLAYNEL 321
             NN            + +    L  L L+ N++
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 24/57 (42%), Positives = 31/57 (54%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
           ++DLS+NR           L +LK L++S NNLT   P +   L  L SLDLS N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
           +LKSL++S+N LT     + + L  L+ LDLS N L    P   + L  L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
           G +P   +K   L S+NL+GN ++G +PPSL +   LEVLD+  N  + + P  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 666 LQVLILRSNRFWGPIGDTKTRVP 688
           L++L L  N   G       RVP
Sbjct: 492 LRILNLNGNSLSG-------RVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 73/298 (24%), Positives = 115/298 (38%), Gaps = 54/298 (18%)

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVS 620
              +L N + L  LD+  N L   I E L  + L  LD+  NN +   P        L  
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144

Query: 621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680
           L+L+ N+++  LP  L N   L+ LD+  N + D     L  L  L  L L  N      
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN------ 196

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
                     K+  +      L+       LE        NN+ +E              
Sbjct: 197 ----------KISDLPPEIELLSA------LEELDL---SNNSIIE-------------- 223

Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
                     L     L   + ++LS+N+ +  +PE +G L++L++L++S+N ++    S
Sbjct: 224 ---------LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SIS 271

Query: 801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGND 858
           SL +LT L  LDLS N L+      +A L  L  L L+       +          N+
Sbjct: 272 SLGSLTNLRELDLSGNSLS-NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 49.4 bits (117), Expect = 8e-06
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 27/192 (14%)

Query: 346 SGSVELYDFA-KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRT 404
           SG  +L+ F  +L +L VL      LSVS     ++   +L AL    C +  + + L +
Sbjct: 282 SGLCKLWIFGNQLTSLPVLPPGLQELSVS-----DNQLASLPALPSELCKLWAYNNQLTS 336

Query: 405 ----QHQLELLDLSENQIGG--RIPSWMWDIGVHT------------LIELDLSRNFLTS 446
                  L+ L +S+NQ+     +PS ++ +  +             L EL +S N LTS
Sbjct: 337 LPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 396

Query: 447 IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
           +  LP   L+ L +  N L  SLP LP  ++S S+  N LT  +P S  +LSS   ++L 
Sbjct: 397 LPVLP-SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453

Query: 507 NNSLSGQIPQCL 518
            N LS +  Q L
Sbjct: 454 GNPLSERTLQAL 465

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
            L  LDLS+N  +     +F  L  L  L+L  NN     P+ F+ L  L  L L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
           +L  LDL +   T  IP      +  L  LDLS N+     P +FS L  LR LDL  NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 199 F 199
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 14/55 (25%)

Query: 29 SHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDA-DCCSWDGVTCD 82
           +D   ALL FK   +     +LS             SW   + D CSW GVTCD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALS-------------SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 46.6 bits (110), Expect = 7e-05
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 31/240 (12%)

Query: 307 NLTQLSFLGLAYNELIGSIPSSIFEL-LNLTEIYLSFSNFSGSV-ELYDFAKLKNLKVL- 363
           N T+L    L    +   IP  I  L L+  E+     N  G++  LY  A    L  + 
Sbjct: 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLY--ANSNQLTSIP 236

Query: 364 -----SLSNISLSVSTKLTANSSFPN-LSALDLSACNISEFPDNLRTQHQLELLDLSENQ 417
                ++  + LS++         P+ L +LDL    IS  P+NL    +L  L + +N 
Sbjct: 237 ATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNS 294

Query: 418 IGG---RIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-LP 473
           I      +PS         +  L++  N LT++       L+ L    N+L  SLP  LP
Sbjct: 295 IRTLPAHLPS--------GITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP 345

Query: 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF 533
           P +    +S N +T  +P +     +I  LD+S N+L+  +P+ L  + L+ +    NN 
Sbjct: 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNL 400

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL 802
           +T+   +DLS N F   IPE +G+L SL+ LN++ N+L+G +P++L
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 454 NLEYLHLDSNSL----QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS 509
           NL+ L L +N L     G+   LP ++    +S N+LT   P +F  L S++ LDLS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP-NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 510 L 510
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 79/306 (25%), Positives = 124/306 (40%), Gaps = 66/306 (21%)

Query: 290 LNLEYNNFVGKIPD--MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
           ++L  +  + +IPD  M TNL  L    L+    +  +PSSI  L  L ++ +S      
Sbjct: 639 IDLRGSKNLKEIPDLSMATNLETLK---LSDCSSLVELPSSIQYLNKLEDLDMS-----R 690

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP----NLSALDLSACNISEFPDNLR 403
              L       NLK  SL  ++LS  ++L    SFP    N+S LDL    I EFP NLR
Sbjct: 691 CENLEILPTGINLK--SLYRLNLSGCSRL---KSFPDISTNISWLDLDETAIEEFPSNLR 745

Query: 404 TQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSN 463
            ++  EL+              + ++    L E       L ++                
Sbjct: 746 LENLDELI--------------LCEMKSEKLWERVQPLTPLMTM---------------- 775

Query: 464 SLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTL 523
                   L P +    +S+     E+PSS  NL  +++L++ N      +P  +   +L
Sbjct: 776 --------LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESL 827

Query: 524 ETLDLRMNNFQGSIP--QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV-GNNN 580
           E+LDL   +   + P   TN     ++ L LS   +E  +P  +     L FLD+ G NN
Sbjct: 828 ESLDLSGCSRLRTFPDISTN-----ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881

Query: 581 LSGQIP 586
           L     
Sbjct: 882 LQRVSL 887

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247
            L+ LDL SNN +  IP      +  L  LDLS N+ +   P +FS L  L  LDL  N+
Sbjct: 1   NLKSLDL-SNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 248 F 248
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680
           L L+   L+G +P  +   ++L+ +++  N I    P  L  +  L+VL L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLP 707
            ++  ++    LRI++ + N L+G +P
Sbjct: 483 PESLGQL--TSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 83  SATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL 142
           S   H+  ++LS + + GNIP   SL  +  L  L+L++N FNGS   S    Q  SL +
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGSIPES--LGQLTSLRI 494

Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP 180
           L+L   + +G +P +LG  +   A  + + N+ +  IP
Sbjct: 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 574 LDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
           L + N  L G IP  +     LQ +++  N+  G++P +      L  L+L+ N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFP 657
           P SL     L +L++  N +    P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 475 HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNF 533
           ++ S  +SNN LT     +F  L +++ LDLS N+L+   P+       L +LDL  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	957
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG4341	483	consensus F-box protein containing LRR [General fu	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG4341	483	consensus F-box protein containing LRR [General fu	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.72
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.17
KOG4308	478	consensus LRR-containing protein [Function unknown	93.15
KOG4308	478	consensus LRR-containing protein [Function unknown	90.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.4
smart00370	26	LRR Leucine-rich repeats, outliers.	86.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.45
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.12
smart00370	26	LRR Leucine-rich repeats, outliers.	84.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.05

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-72  Score=706.72  Aligned_cols=584  Identities=37%  Similarity=0.614  Sum_probs=443.8

Q ss_pred             CHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCc
Q 002167           29 SHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSL  108 (957)
Q Consensus        29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l  108 (957)
                      +++|++||++||+++.++.+              .+.+|...++||.|.||.|+. .++|+.|+|++++++|.+++  .+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~--------------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~   89 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK--------------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AI   89 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc--------------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HH
Confidence            67899999999999976543              678998888999999999986 47999999999999998876  78


Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167          109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ  188 (957)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  188 (957)
                      ..+++|++|+|++|.+.+. +|..++..+++|++|+|++|+++|.+|..  . +++|++|+|++|.+.+.+|..++++++
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S-IPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCcc--c-cCCCCEEECcCCcccccCChHHhcCCC
Confidence            8899999999999988765 78777678899999999999888888753  3 788889999988888888888888888


Q ss_pred             CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEEC
Q 002167          189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL  268 (957)
Q Consensus       189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L  268 (957)
                      |++|++++|.+.+.+|..+. ++++|++|++++|.+++.+|..++++++|++|++++|++.+.+|..+.. +++|++|++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L  243 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDL  243 (968)
T ss_pred             CCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEEC
Confidence            88888888888888888887 8888888888888888888888888888888888888888888888776 888888888


Q ss_pred             cCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCccc
Q 002167          269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGS  348 (957)
Q Consensus       269 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  348 (957)
                      ++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ 
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~-  322 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG-  322 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC-
Confidence            8888888888888888888888888888877777777777888888888877777777766666666666666655542 


Q ss_pred             ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh
Q 002167          349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD  428 (957)
Q Consensus       349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  428 (957)
                                                                      .+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus       323 ------------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        323 ------------------------------------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             ------------------------------------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence                                                            23334445555555555555555555544332


Q ss_pred             hccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167          429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN  508 (957)
Q Consensus       429 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  508 (957)
                      .                                            ++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       355 ~--------------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        355 H--------------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             C--------------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            2                                            23333333344444444444444444444444444


Q ss_pred             cCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCcc
Q 002167          509 SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC  588 (957)
Q Consensus       509 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  588 (957)
                      .+.                       +.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..
T Consensus       391 ~l~-----------------------~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  447 (968)
T PLN00113        391 SLE-----------------------GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR  447 (968)
T ss_pred             Eec-----------------------ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence            444                       444444555566777777777777777777777777777777777777777665


Q ss_pred             ccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167          589 LGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ  667 (957)
Q Consensus       589 ~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  667 (957)
                      +.. ++|+.|++++|++.+.+|..+. .++|+.|++++|++++.+                        |..+..     
T Consensus       448 ~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~------------------------~~~~~~-----  497 (968)
T PLN00113        448 KWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV------------------------PRKLGS-----  497 (968)
T ss_pred             hccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc------------------------Chhhhh-----
Confidence            544 7777777777777777766542 233444444443333332                        222111     


Q ss_pred             EEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEe
Q 002167          668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMK  747 (957)
Q Consensus       668 ~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (957)
                                                                                                      
T Consensus       498 --------------------------------------------------------------------------------  497 (968)
T PLN00113        498 --------------------------------------------------------------------------------  497 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc
Q 002167          748 GIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA  827 (957)
Q Consensus       748 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~  827 (957)
                               ++.|+.|+|++|++++.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|.+|..+.
T Consensus       498 ---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        498 ---------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             ---------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence                     23455566777777777888888899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167          828 SLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP  870 (957)
Q Consensus       828 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~  870 (957)
                      .+++|++|++++|+++|.+|..++|.++...+|.||+++||.+
T Consensus       569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-56  Score=563.08  Aligned_cols=496  Identities=35%  Similarity=0.583  Sum_probs=340.0

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhcc-CCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS-NLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      .+++.|+|++|.+.|.+|..+.. +++|++|+|++|.+.+.+|..+. ++++|++|++++|++++.+|..   .+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCE
Confidence            46888888888888888877776 88888888888888877776554 7788888888888877777653   5677777


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  296 (957)
                      |++++|.+++.+|..++++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            777777777777777777777777777777777667766665 7777777777777766666666666666666666666


Q ss_pred             CcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccc
Q 002167          297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL  376 (957)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  376 (957)
                      +.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.                              
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------------------------  273 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------------------------------  273 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee------------------------------
Confidence            66666666666666666666666655555544444444444444333322                              


Q ss_pred             cCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccc
Q 002167          377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLE  456 (957)
Q Consensus       377 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~  456 (957)
                                         +.+|..+..+++|++|++++|.+.                                     
T Consensus       274 -------------------~~~p~~l~~l~~L~~L~Ls~n~l~-------------------------------------  297 (968)
T PLN00113        274 -------------------GPIPPSIFSLQKLISLDLSDNSLS-------------------------------------  297 (968)
T ss_pred             -------------------ccCchhHhhccCcCEEECcCCeec-------------------------------------
Confidence                               112222333333333333333333                                     


Q ss_pred             eeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCc
Q 002167          457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS  536 (957)
Q Consensus       457 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~  536 (957)
                                                     +.+|..+.++++|+.|++++|.+++.+|                     
T Consensus       298 -------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------------------  325 (968)
T PLN00113        298 -------------------------------GEIPELVIQLQNLEILHLFSNNFTGKIP---------------------  325 (968)
T ss_pred             -------------------------------cCCChhHcCCCCCcEEECCCCccCCcCC---------------------
Confidence                                           3333334444455555555554443333                     


Q ss_pred             CCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccC
Q 002167          537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKS  615 (957)
Q Consensus       537 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l  615 (957)
                        ..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+.. ++|+.|++++|++.+.+|..+..+
T Consensus       326 --~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        326 --VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             --hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence              23333455666666666666666666666666666666666666666665544 556666666666666666666666


Q ss_pred             CCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEE
Q 002167          616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIM  695 (957)
Q Consensus       616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L  695 (957)
                      ++|+.|++++|++++.+|..+.+++.|+.|++++|.+++.+|..+..+                          ++|+.|
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------~~L~~L  457 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM--------------------------PSLQML  457 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC--------------------------CCCcEE
Confidence            666666666666666666666666666666666666666555544444                          455555


Q ss_pred             EcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCc
Q 002167          696 DCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIP  775 (957)
Q Consensus       696 dls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip  775 (957)
                      ++++|++.|.+|...                                             ...+|+.||+++|++++.+|
T Consensus       458 ~L~~n~~~~~~p~~~---------------------------------------------~~~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        458 SLARNKFFGGLPDSF---------------------------------------------GSKRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             ECcCceeeeecCccc---------------------------------------------ccccceEEECcCCccCCccC
Confidence            566666666555321                                             02568899999999999999


Q ss_pred             ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167          776 EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       776 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                      ..++++++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|..
T Consensus       493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.3e-39  Score=325.01  Aligned_cols=228  Identities=26%  Similarity=0.388  Sum_probs=163.1

Q ss_pred             CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEE
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL  241 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  241 (957)
                      -..|+.+++++|.+... ...+.++..|.+|++.+|+++ .+|++++ .+..++.++.++|+++ .+|+.++.+.+|+.|
T Consensus        44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKL  119 (565)
T ss_pred             hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence            35677888888877643 345777888888888888877 7788887 7788888888888887 677888888888888


Q ss_pred             eccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167          242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL  321 (957)
Q Consensus       242 ~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  321 (957)
                      ++++|.+. ++|++++. +..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|..+. ++.|++||...|.+
T Consensus       120 ~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  120 DCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL  195 (565)
T ss_pred             hcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence            88888887 78888877 788888888888887 6677788888888888888888755554444 88888888888876


Q ss_pred             CCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh
Q 002167          322 IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN  401 (957)
Q Consensus       322 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~  401 (957)
                      + .+|+.++.+.+|..|++..|.+. .+                           +.+..+..|+++++..|.+..+|..
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~l---------------------------Pef~gcs~L~Elh~g~N~i~~lpae  246 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIR-FL---------------------------PEFPGCSLLKELHVGENQIEMLPAE  246 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhcccc-cC---------------------------CCCCccHHHHHHHhcccHHHhhHHH
Confidence            5 77888888888888888777765 11                           1223344445555555555555555


Q ss_pred             hh-cCCCCCEEECcCCcCCCCCChhhh
Q 002167          402 LR-TQHQLELLDLSENQIGGRIPSWMW  427 (957)
Q Consensus       402 l~-~~~~L~~L~Ls~n~l~~~~p~~~~  427 (957)
                      .. +++++..||+.+|+++ +.|+.+.
T Consensus       247 ~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             Hhcccccceeeeccccccc-cCchHHH
Confidence            43 5566666666666654 4454443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-38  Score=324.02  Aligned_cols=488  Identities=26%  Similarity=0.367  Sum_probs=254.6

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167          110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL  189 (957)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  189 (957)
                      .-..++.|++++|++..  +.+.+ .++..|.+|++++|+++ ++|++++. +..++.++.++|.+. .+|..++.+.+|
T Consensus        43 ~qv~l~~lils~N~l~~--l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l  116 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEV--LREDL-KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISL  116 (565)
T ss_pred             hhcchhhhhhccCchhh--ccHhh-hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhh
Confidence            34456777888877643  44555 67777788888888877 77777777 777777788777766 566677777777


Q ss_pred             CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167          190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS  269 (957)
Q Consensus       190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  269 (957)
                      ++|++++|.+. .+|++++ .+..|..++..+|+++ ..|..+..+.+|..+++.+|++. ..|+.... ++.|++||.-
T Consensus       117 ~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             hhhhcccccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence            77777777776 6677776 6777777777777776 55666777777777777777776 55555555 6777777776


Q ss_pred             CCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchh-cccCCceEecCCCCCccc
Q 002167          270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-ELLNLTEIYLSFSNFSGS  348 (957)
Q Consensus       270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~  348 (957)
                      .|-+. .+|..++.+.+|+.|++..|++. .+| .|..+..|++++++.|++. .+|.... .+.++..||+..|++.. 
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-  266 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-  266 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-
Confidence            66665 56666666666666666666665 344 4666666666666666654 3333322 34444444444443331 


Q ss_pred             ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh
Q 002167          349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD  428 (957)
Q Consensus       349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  428 (957)
                                                .......+.+|++||+++|.++.+|..++++ +|+.|.+.+|.+.. +-..+..
T Consensus       267 --------------------------~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~  318 (565)
T KOG0472|consen  267 --------------------------VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIIS  318 (565)
T ss_pred             --------------------------CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHc
Confidence                                      1111123445555556666666666666666 66666666665531 1111100


Q ss_pred             hc----cCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCC--CCCccEEEeccCCccCCCCccccCC--CCC
Q 002167          429 IG----VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL--PPHMVSFSISNNSLTGEIPSSFCNL--SSI  500 (957)
Q Consensus       429 ~~----~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~l~~l--~~L  500 (957)
                      .+    ++.|+. .+..-.++......-.   .-+    ...+..|+.  ..+.+.|++++-+++....+.|..-  .-.
T Consensus       319 ~gT~~vLKyLrs-~~~~dglS~se~~~e~---~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V  390 (565)
T KOG0472|consen  319 KGTQEVLKYLRS-KIKDDGLSQSEGGTET---AMT----LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV  390 (565)
T ss_pred             ccHHHHHHHHHH-hhccCCCCCCcccccc---cCC----CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence            00    000110 0000000000000000   000    000001110  1234445555555442222222211  114


Q ss_pred             CEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCC
Q 002167          501 QYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN  579 (957)
Q Consensus       501 ~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  579 (957)
                      ...+++.|++. ++|..+... .+.+.-+..|+..+.+|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|
T Consensus       391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence            45555555555 344333221 2222222222222344555555555555555555443 44555555555555555555


Q ss_pred             ccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167          580 NLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID  653 (957)
Q Consensus       580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  653 (957)
                      ++. .+|.+... ..++.+-.++|++...-|+.+.++.+|.+|||.+|.+. .+|+.++++++|++|++.+|++.
T Consensus       469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            554 44444433 33444444445554444444555555555555555554 34445555555555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-35  Score=326.97  Aligned_cols=415  Identities=28%  Similarity=0.363  Sum_probs=216.8

Q ss_pred             EECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCC
Q 002167          143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN  222 (957)
Q Consensus       143 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n  222 (957)
                      +|.+.+.+. .||..+.. -..++.|+++.|.+....-+.+.+.-+|+.|++++|.+. ..|..+. .+.+|+.|+++.|
T Consensus         3 vd~s~~~l~-~ip~~i~~-~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILN-NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRN   78 (1081)
T ss_pred             cccccccCc-ccchhhcc-HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchh
Confidence            455555555 66666654 344666666666554322233444555777777766665 5666665 5667777777777


Q ss_pred             CCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCC
Q 002167          223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP  302 (957)
Q Consensus       223 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  302 (957)
                      .|. ..|....++.+|++|.|.+|.+. ..|.++.. +++|++|+++.|.+. .+|..+..++.++.+..++|.....  
T Consensus        79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~--  152 (1081)
T KOG0618|consen   79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR--  152 (1081)
T ss_pred             hHh-hCchhhhhhhcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh--
Confidence            666 45566666777777777777666 66777665 777777777777766 5666677777777777777622212  


Q ss_pred             ccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcc
Q 002167          303 DMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF  382 (957)
Q Consensus       303 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l  382 (957)
                        ++... ++.+++..|.+.+.++..+..++.  .|+|.+|.+. .   ..+..+.+|+.+....|.+            
T Consensus       153 --lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~l------------  211 (1081)
T KOG0618|consen  153 --LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQL------------  211 (1081)
T ss_pred             --hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhccc------------
Confidence              22222 667777777777666666665555  5666666654 1   1223333333333333321            


Q ss_pred             ccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccC
Q 002167          383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDS  462 (957)
Q Consensus       383 ~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~  462 (957)
                                   ..             ++++                .++++.|+.+.|.++.....+           
T Consensus       212 -------------s~-------------l~~~----------------g~~l~~L~a~~n~l~~~~~~p-----------  238 (1081)
T KOG0618|consen  212 -------------SE-------------LEIS----------------GPSLTALYADHNPLTTLDVHP-----------  238 (1081)
T ss_pred             -------------ce-------------EEec----------------CcchheeeeccCcceeecccc-----------
Confidence                         11             1110                123333333333332211111           


Q ss_pred             ccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC
Q 002167          463 NSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA  542 (957)
Q Consensus       463 n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~  542 (957)
                               .+.++++++++.|++++ +|++++.+.+|+.++..+|.++...-..+...+|+.|.+.+|.+. .+|....
T Consensus       239 ---------~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le  307 (1081)
T KOG0618|consen  239 ---------VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLE  307 (1081)
T ss_pred             ---------ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCccc
Confidence                     13566677777777663 457888888888888888888633223333336666666666655 3344444


Q ss_pred             CCCCccEEEccCCcCCCCCCccccCCCC-CCeEEcCCCccccccCccccC--CcccEEECCCCcCCCCCccccccCCCcc
Q 002167          543 KGCKLTYLRLSGNHLEGPLPPSLTNCVK-LQFLDVGNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLV  619 (957)
Q Consensus       543 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  619 (957)
                      ...+|++|+|..|++....+..+.-... |..|+.+.|.+. ..|..-..  +.|+.|++.+|.++...-..+.+..+|+
T Consensus       308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            4555555555555554222222222221 444444444443 22211111  3344444444444443333344444444


Q ss_pred             EEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167          620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID  653 (957)
Q Consensus       620 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  653 (957)
                      .|+|++|++.......+.++..|++|++|+|+++
T Consensus       387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             eeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence            4444444443222233344444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-33  Score=299.78  Aligned_cols=365  Identities=28%  Similarity=0.310  Sum_probs=198.1

Q ss_pred             CcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEec
Q 002167          214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE  293 (957)
Q Consensus       214 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  293 (957)
                      -+.|++++|.+....+..|.++++|+++++.+|.++ .||..... ..+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            344555555555555555555555555555555555 55544333 4445555555555554444444445555555555


Q ss_pred             cCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167          294 YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS  373 (957)
Q Consensus       294 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~  373 (957)
                      .|.++......|..-.++++|+|++|.++..-...|..+.+|..|                                   
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl-----------------------------------  202 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL-----------------------------------  202 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee-----------------------------------
Confidence            554443333333333344444444444433222223333333333                                   


Q ss_pred             ccccCCCccccccccccccccCCCcChh-hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167          374 TKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW  452 (957)
Q Consensus       374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  452 (957)
                                     .|+.|.++.+|.. |..+++|+.|+|..|+|.  +-+++.-.++++|+.|.+..|.+..+     
T Consensus       203 ---------------kLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I~kL-----  260 (873)
T KOG4194|consen  203 ---------------KLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDISKL-----  260 (873)
T ss_pred             ---------------ecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCcccc-----
Confidence                           3333333445443 333566666666666553  22222222334444444444433333     


Q ss_pred             CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc-cccccceeecccc
Q 002167          453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLETLDLRMN  531 (957)
Q Consensus       453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~~L~~L~L~~n  531 (957)
                                                           -...|..+.++++|+|+.|++...-..++ +...|+.|++++|
T Consensus       261 -------------------------------------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  261 -------------------------------------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             -------------------------------------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence                                                 33345555555566666665554333332 3335666666666


Q ss_pred             cccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCc-
Q 002167          532 NFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLP-  609 (957)
Q Consensus       532 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p-  609 (957)
                      .|...-++.+..+++|++|+|+.|+++...+..|..+..|++|+|++|.+...-...+.. ++|++|||++|.++..+. 
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            666555666666667777777777777666666777777777777777766433333322 667777777777665443 


Q ss_pred             --cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEccccc
Q 002167          610 --QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR  675 (957)
Q Consensus       610 --~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  675 (957)
                        ..|.++++|+.|++.+|++....-.+|..+.+|+.|||.+|.|..+-|.+|..+ .|+.|.+..-.
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence              346667777777777777775444677777777777777777777777777776 67766655433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.6e-34  Score=323.38  Aligned_cols=479  Identities=29%  Similarity=0.384  Sum_probs=292.8

Q ss_pred             EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167           91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL  170 (957)
Q Consensus        91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L  170 (957)
                      +|.++..++ .||.  .+..-..+..|+++.|.+-... .+.+ .+.-+|+.||+++|.+. ..|..+.. +.+|+.|++
T Consensus         3 vd~s~~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~-~~~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFV-EKRVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNL   75 (1081)
T ss_pred             cccccccCc-ccch--hhccHHHHHhhhccccccccCc-hHHh-hheeeeEEeeccccccc-cCCchhhh-HHHHhhccc
Confidence            455665554 3443  4444455777888888765432 1223 55555888888888876 77777776 778888888


Q ss_pred             cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167          171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG  250 (957)
Q Consensus       171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  250 (957)
                      +.|.+. ..|....++.+|++|.|.+|.+. .+|.++. .+.+|++|+++.|.+. .+|..+..++.++.+..++|....
T Consensus        76 s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   76 SRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             chhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence            887665 55677777888888888777766 6777776 7778888888887776 667777777777777777772221


Q ss_pred             ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchh
Q 002167          251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF  330 (957)
Q Consensus       251 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  330 (957)
                      .    ++  -..++.+++..|.+.+.++.++..+++  .|+|++|.+.   ...+.++.+|+.+....|++...    .-
T Consensus       152 ~----lg--~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~  216 (1081)
T KOG0618|consen  152 R----LG--QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EI  216 (1081)
T ss_pred             h----hc--cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----Ee
Confidence            1    11  122666777777777777766666666  6777777665   12355666666666666655411    11


Q ss_pred             cccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCE
Q 002167          331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL  410 (957)
Q Consensus       331 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~  410 (957)
                      ..++|+.|+.+.|.+.                            .........+|++++++.+.+..+|+|+..+.+|+.
T Consensus       217 ~g~~l~~L~a~~n~l~----------------------------~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPLT----------------------------TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEA  268 (1081)
T ss_pred             cCcchheeeeccCcce----------------------------eeccccccccceeeecchhhhhcchHHHHhcccceE
Confidence            2234444444444433                            111122345788888888888899999999999999


Q ss_pred             EECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCC
Q 002167          411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEI  490 (957)
Q Consensus       411 L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  490 (957)
                      ++..+|+++ .+|..+...  .+|+.|.+..|.++.+                                           
T Consensus       269 l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yi-------------------------------------------  302 (1081)
T KOG0618|consen  269 LNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYI-------------------------------------------  302 (1081)
T ss_pred             ecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhC-------------------------------------------
Confidence            999999884 666665544  4444444444444433                                           


Q ss_pred             CccccCCCCCCEEEcccCcCccCCCccc-ccc--ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccC
Q 002167          491 PSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNS--TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTN  567 (957)
Q Consensus       491 p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  567 (957)
                      |.....++.|++|+|..|.+. ..|+.+ ...  +|+.|+.+.|++.......-...+.|+.|++.+|+++...-..+.+
T Consensus       303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN  381 (1081)
T ss_pred             CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence            333344455555555555554 233221 111  3455555555554333222233455666666666666665556666


Q ss_pred             CCCCCeEEcCCCccccccCccc-cC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEE
Q 002167          568 CVKLQFLDVGNNNLSGQIPECL-GN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL  645 (957)
Q Consensus       568 l~~L~~L~Ls~n~l~~~~p~~~-~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  645 (957)
                      .+.|+.|+|++|++. .+|... .. ..|++|+||+|+++ .+|.+...+..|++|...+|++. ..| .+.+++.|+.+
T Consensus       382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            666666666666665 444433 22 56666666666666 55666666666777776666666 444 56666677777


Q ss_pred             eCCCCccccC-ccccccccccccEEEccccc
Q 002167          646 DVGNNQIDDT-FPYWLDVLLELQVLILRSNR  675 (957)
Q Consensus       646 ~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~  675 (957)
                      |++.|+++.. +|+... -++|++||+++|.
T Consensus       458 DlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             ecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            7777666543 222222 2566666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.98  E-value=5.4e-33  Score=295.20  Aligned_cols=343  Identities=25%  Similarity=0.283  Sum_probs=176.5

Q ss_pred             CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcE
Q 002167          210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW  289 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  289 (957)
                      ++++|+++++.+|.++ .+|.......+|+.|+|.+|.++..-.+++.. ++.|+.|||+.|.|+..-...|..-.++++
T Consensus       100 nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLSrN~is~i~~~sfp~~~ni~~  177 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLSRNLISEIPKPSFPAKVNIKK  177 (873)
T ss_pred             cCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh-HhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence            4455555555555444 34443333444555555555554222223322 555555555555555433334444455666


Q ss_pred             EEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167          290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       290 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      |+|++|.|+..-...|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|.+. .++...|.+++           
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~-----------  245 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLP-----------  245 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCch-----------
Confidence            666666666555555666666666666666665433344444666666666555554 22222333343           


Q ss_pred             ccccccccCCCccccccccccccccCCCcChh-hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCC
Q 002167          370 LSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID  448 (957)
Q Consensus       370 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~  448 (957)
                                    +|+.|.+..|++..+.+. |..+.++++|+|+.|++...--.|++.+  .+|+.|++         
T Consensus       246 --------------Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~l---------  300 (873)
T KOG4194|consen  246 --------------SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL--TSLEQLDL---------  300 (873)
T ss_pred             --------------hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc--chhhhhcc---------
Confidence                          444444444444444432 4556667777777777665444454433  33333333         


Q ss_pred             CCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeec
Q 002167          449 HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL  528 (957)
Q Consensus       449 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L  528 (957)
                                                       ++|.+....++++..+++|++|+|++|+++..-+..+          
T Consensus       301 ---------------------------------S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf----------  337 (873)
T KOG4194|consen  301 ---------------------------------SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF----------  337 (873)
T ss_pred             ---------------------------------chhhhheeecchhhhcccceeEeccccccccCChhHH----------
Confidence                                             3333333334445555666666666666654444333          


Q ss_pred             ccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccc----cCCcccEEECCCCcC
Q 002167          529 RMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL----GNSTLQVLDMRMNNF  604 (957)
Q Consensus       529 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~~~L~~L~Ls~n~l  604 (957)
                                   ..+..|++|+|++|.++..-...|..+++|++|||++|.++..+.+.-    +.++|+.|++.+|++
T Consensus       338 -------------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  338 -------------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             -------------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence                         333444444444444443333445555555555555555554443321    125555566666655


Q ss_pred             CCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCC
Q 002167          605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG  648 (957)
Q Consensus       605 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  648 (957)
                      ....-.+|.++++|++|||.+|.+-..-|.+|..+ .|++|.+.
T Consensus       405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            54444566666666666666666666666666666 66666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.2e-33  Score=294.64  Aligned_cols=365  Identities=30%  Similarity=0.469  Sum_probs=240.2

Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167          109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ  188 (957)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  188 (957)
                      +-++..|-.|+++|+|+|...|..+ ..++.++.|.|....+. .+|..++. +.+|++|.+++|++.. +-..++.++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~-vhGELs~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLIS-VHGELSDLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHh-hhhhhccchh
Confidence            4466778888888888888888888 88999999999999998 99999998 9999999999998873 3445788899


Q ss_pred             CCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167          189 LRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD  267 (957)
Q Consensus       189 L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  267 (957)
                      |+.+.+++|++. .-+|..++ .+..|+.||||+|++. ..|..+..-+++-+|+||+|++. .||..++-+++.|-.||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence            999999998874 35788888 8888888999988887 66788888888888888888887 88888777777888888


Q ss_pred             CcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC-CCCCcchhcccCCceEecCCCCCc
Q 002167          268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI-GSIPSSIFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~  346 (957)
                      |++|++. .+|..+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+            
T Consensus       157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N------------  223 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN------------  223 (1255)
T ss_pred             cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh------------
Confidence            8888877 55666777777777777777654322222333444555555444322 123333333333            


Q ss_pred             ccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhh
Q 002167          347 GSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWM  426 (957)
Q Consensus       347 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~  426 (957)
                                                            |..++++.|.+..+|+.+.++++|+.|+|++|+|+       
T Consensus       224 --------------------------------------L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-------  258 (1255)
T KOG0444|consen  224 --------------------------------------LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-------  258 (1255)
T ss_pred             --------------------------------------hhhccccccCCCcchHHHhhhhhhheeccCcCcee-------
Confidence                                                  33333333333445555555555555555555554       


Q ss_pred             hhhccCcceEEECCCcccCCCCC--CCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEE
Q 002167          427 WDIGVHTLIELDLSRNFLTSIDH--LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD  504 (957)
Q Consensus       427 ~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  504 (957)
                                         .+..  ..|.+|+                     +|+++.|+++ .+|.+++++++|+.|.
T Consensus       259 -------------------eL~~~~~~W~~lE---------------------tLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  259 -------------------ELNMTEGEWENLE---------------------TLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             -------------------eeeccHHHHhhhh---------------------hhccccchhc-cchHHHhhhHHHHHHH
Confidence                               2221  1233333                     3334444443 6778888888888888


Q ss_pred             cccCcCcc-CCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcc
Q 002167          505 LSNNSLSG-QIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL  581 (957)
Q Consensus       505 L~~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  581 (957)
                      +.+|+++- -+|..++.. .|+++...+|.+. ..|..++.|.+|+.|.|+.|++. .+|+.+.-++.|+.||+..|.-
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            88888752 345444443 5555555555543 44555555555555555555554 3455555555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-31  Score=285.85  Aligned_cols=365  Identities=28%  Similarity=0.464  Sum_probs=196.3

Q ss_pred             cCCCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCC
Q 002167          135 DQFPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQ  213 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~  213 (957)
                      +-++-.|-.|+++|.++ +.+|.++-+ +++++.|.|....+. .+|..++.|.+|++|.+.+|++. .+...+. .++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchh
Confidence            34566777888888888 567877777 888888888777765 56777777888888888777776 4444554 5667


Q ss_pred             CcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEe
Q 002167          214 LAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL  292 (957)
Q Consensus       214 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  292 (957)
                      |+.+.+.+|++.. -+|..+.++..|..||||+|++. +.|..+.. -+++-+|+|++|+|..+....+.+++.|-.|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            7777777766542 34555555666666666666665 55555544 455555555555555222222334444445555


Q ss_pred             ccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccc
Q 002167          293 EYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSV  372 (957)
Q Consensus       293 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~  372 (957)
                      ++|++.                         .+|+.+..+..|++|+|++|.+. ......+..+++|++|.+++.+-+ 
T Consensus       158 S~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT-  210 (1255)
T KOG0444|consen  158 SNNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT-  210 (1255)
T ss_pred             ccchhh-------------------------hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch-
Confidence            554444                         34444445555555555554432 111112223333444444443311 


Q ss_pred             cccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167          373 STKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW  452 (957)
Q Consensus       373 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  452 (957)
                                            +..+|..+..+.+|..+|++.|.+. .+|+.+...                       
T Consensus       211 ----------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-----------------------  244 (1255)
T KOG0444|consen  211 ----------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-----------------------  244 (1255)
T ss_pred             ----------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-----------------------
Confidence                                  2467777777777777777777764 444444332                       


Q ss_pred             CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccc
Q 002167          453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMN  531 (957)
Q Consensus       453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n  531 (957)
                                           ++|+.|++++|.++. +........+|++|+++.|+++ .+|.++... .|+.|.+.+|
T Consensus       245 ---------------------~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  245 ---------------------RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             ---------------------hhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence                                 333333444443331 1122233445555555555555 444443322 4555555555


Q ss_pred             ccc-CcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCc
Q 002167          532 NFQ-GSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNN  603 (957)
Q Consensus       532 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~  603 (957)
                      +++ .-+|..++++..|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+.. +.|+.||+..|.
T Consensus       302 kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  302 KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            444 234444555555555555544443 44555555555555555555544 44444433 444444444443

>PLN03210 Resistant to P

Probab=99.89  E-value=1.6e-21  Score=246.87  Aligned_cols=341  Identities=24%  Similarity=0.301  Sum_probs=193.5

Q ss_pred             CCCCCcEEEccCCC------CCCCCCcccCCCC-cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCccccc
Q 002167          210 NITQLAYLDLSSNS------FSGHIPSSFSNLQ-QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS  282 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~  282 (957)
                      ++++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+.  ..+|++|++.+|.+. .++..+.
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~  631 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDGVH  631 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccccc
Confidence            45555555554332      1122344444432 4555555555554 5554442  455666666655554 3444555


Q ss_pred             CcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcE
Q 002167          283 NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKV  362 (957)
Q Consensus       283 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  362 (957)
                      .+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|.....++...  ++++|+.
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~  708 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYR  708 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCE
Confidence            556666666655544334443 5555666666666655445556666666666666666554333333211  4555555


Q ss_pred             EEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCc
Q 002167          363 LSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN  442 (957)
Q Consensus       363 L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n  442 (957)
                      |++++|..  ....+.  ..++|+.|+++++.+..+|..+ .+++|++|.+.++..                        
T Consensus       709 L~Lsgc~~--L~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~------------------------  759 (1153)
T PLN03210        709 LNLSGCSR--LKSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKS------------------------  759 (1153)
T ss_pred             EeCCCCCC--cccccc--ccCCcCeeecCCCccccccccc-cccccccccccccch------------------------
Confidence            55555531  111110  1234455555555555554433 234444444433221                        


Q ss_pred             ccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccc
Q 002167          443 FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST  522 (957)
Q Consensus       443 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~  522 (957)
                        ..+...    +       ..+.......+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|......+
T Consensus       760 --~~l~~~----~-------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s  826 (1153)
T PLN03210        760 --EKLWER----V-------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES  826 (1153)
T ss_pred             --hhcccc----c-------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence              100000    0       000000111246778888888877778888888899999999998876667787766668


Q ss_pred             cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCC
Q 002167          523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRM  601 (957)
Q Consensus       523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~  601 (957)
                      |+.|++++|.....+|..   ..+|++|++++|.++ .+|..+..+++|++|++++|+-...+|..... ++|+.+++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence            888888888766555543   357888888888887 56778888888888888886555566665544 7788888887


Q ss_pred             Cc
Q 002167          602 NN  603 (957)
Q Consensus       602 n~  603 (957)
                      |.
T Consensus       903 C~  904 (1153)
T PLN03210        903 CG  904 (1153)
T ss_pred             Cc
Confidence            75

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.3e-21  Score=245.41  Aligned_cols=344  Identities=22%  Similarity=0.269  Sum_probs=189.1

Q ss_pred             hhhccCCcEEECcCCc------CCccCcccccCcC-CCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcch
Q 002167          257 GNNITQLAYLDLSSNG------FSGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI  329 (957)
Q Consensus       257 ~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  329 (957)
                      +.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            3346677777665442      2224555555553 5777777777665 456655 4577888888887765 456666


Q ss_pred             hcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCC
Q 002167          330 FELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE  409 (957)
Q Consensus       330 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~  409 (957)
                      ..+++|+.|+++++.....++  .+..+++|+.|++++|.                        .+..+|..+..+++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~------------------------~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCS------------------------SLVELPSSIQYLNKLE  684 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCC------------------------CccccchhhhccCCCC
Confidence            677777777777654332222  13334444444444432                        2356777777778888


Q ss_pred             EEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC
Q 002167          410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE  489 (957)
Q Consensus       410 ~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~  489 (957)
                      .|++++|...+.+|..+   .++                     +|+.|++++|.....+|..+.+|+.|++++|.+. .
T Consensus       685 ~L~L~~c~~L~~Lp~~i---~l~---------------------sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        685 DLDMSRCENLEILPTGI---NLK---------------------SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-E  739 (1153)
T ss_pred             EEeCCCCCCcCccCCcC---CCC---------------------CCCEEeCCCCCCccccccccCCcCeeecCCCccc-c
Confidence            88887776544555432   123                     4444444444444444555567777777777765 4


Q ss_pred             CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCC
Q 002167          490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCV  569 (957)
Q Consensus       490 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  569 (957)
                      +|..+ .+++|++|++.++.... ++...               ....+......++|+.|++++|...+.+|..+++++
T Consensus       740 lP~~~-~l~~L~~L~l~~~~~~~-l~~~~---------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~  802 (1153)
T PLN03210        740 FPSNL-RLENLDELILCEMKSEK-LWERV---------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH  802 (1153)
T ss_pred             ccccc-cccccccccccccchhh-ccccc---------------cccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence            55444 46777777777654321 11000               000011111224555555555555555555555566


Q ss_pred             CCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167          570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN  649 (957)
Q Consensus       570 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  649 (957)
                      +|+.|++++|...+.+|.....++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            666666655544445555544455666666655444334332   245556666666555 3555566666666666665


Q ss_pred             CccccCccccccccccccEEEccccc
Q 002167          650 NQIDDTFPYWLDVLLELQVLILRSNR  675 (957)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~  675 (957)
                      |.-...+|..+..+++|+.+++++|.
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCCc
Confidence            44333455555556666666666554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7.7e-21  Score=222.33  Aligned_cols=261  Identities=28%  Similarity=0.335  Sum_probs=138.2

Q ss_pred             ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167          476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN  555 (957)
Q Consensus       476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  555 (957)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|..  .++|++|++++|+++.                    
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~Lts--------------------  256 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQLTS--------------------  256 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCccCc--------------------
Confidence            345666666665 3454443  35666666666665 23431  1244444444444442                    


Q ss_pred             cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167          556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS  635 (957)
Q Consensus       556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  635 (957)
                           +|..   .++|+.|++++|.++ .+|..  ..+|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..
T Consensus       257 -----LP~l---p~sL~~L~Ls~N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l  320 (788)
T PRK15387        257 -----LPVL---PPGLLELSIFSNPLT-HLPAL--PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL  320 (788)
T ss_pred             -----ccCc---ccccceeeccCCchh-hhhhc--hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC
Confidence                 2221   234445555555444 23321  1345555555555542 232   12445555555555553 2221


Q ss_pred             ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhh
Q 002167          636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFK  715 (957)
Q Consensus       636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~  715 (957)
                         ...|+.|++++|++++ +|..   ..+|+.|+|++|++.+ +|..     .++|+.|++++|++++ +|..      
T Consensus       321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l------  380 (788)
T PRK15387        321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL------  380 (788)
T ss_pred             ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc------
Confidence               1234455555555543 2221   1345556666655543 2211     2355666666666653 3311      


Q ss_pred             ccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCC
Q 002167          716 AMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT  795 (957)
Q Consensus       716 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  795 (957)
                                                               +..|+.|++++|+|++ +|...   ++|+.|++++|+++
T Consensus       381 -----------------------------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Ls  415 (788)
T PRK15387        381 -----------------------------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT  415 (788)
T ss_pred             -----------------------------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCC
Confidence                                                     1346677777777764 44432   46777777777777


Q ss_pred             CCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167          796 GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~  848 (957)
                      + +|...   .+|+.|++++|+++ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus       416 s-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        416 S-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             C-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            4 56432   35667777777776 5777777777777777777777777664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.6e-20  Score=217.94  Aligned_cols=94  Identities=32%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccC
Q 002167          546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG  625 (957)
Q Consensus       546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  625 (957)
                      +|+.|++++|+++. +|..   .++|+.|++++|++++ +|..  ..+|+.|++++|.+++ +|..   ..+|+.|+|++
T Consensus       283 ~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~  351 (788)
T PRK15387        283 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSD  351 (788)
T ss_pred             hcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---ccccceEecCC
Confidence            45555555555552 2321   2456666666666653 3331  2346666666666653 3421   13567777777


Q ss_pred             CcCccCCCccccCCCCCcEEeCCCCcccc
Q 002167          626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDD  654 (957)
Q Consensus       626 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  654 (957)
                      |++++ +|..   ..+|+.|++++|+++.
T Consensus       352 N~Ls~-LP~l---p~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        352 NQLAS-LPTL---PSELYKLWAYNNRLTS  376 (788)
T ss_pred             CccCC-CCCC---Ccccceehhhcccccc
Confidence            77763 4432   2355666666666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=2.5e-22  Score=205.65  Aligned_cols=297  Identities=25%  Similarity=0.283  Sum_probs=170.1

Q ss_pred             cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC-CCCCCCCCcc
Q 002167          153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS-NSFSGHIPSS  231 (957)
Q Consensus       153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~-n~l~~~~p~~  231 (957)
                      ++|..+.   +.-..++|..|.|+...|.+|+.+++||.|||++|+|+..-|..+. .+++|..|-+.+ |+|+......
T Consensus        60 eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   60 EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhhhhhH
Confidence            5565543   2456677888888777777777777777777777777744444443 666666655544 6666555556


Q ss_pred             cCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcC
Q 002167          232 FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL  311 (957)
Q Consensus       232 l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  311 (957)
                      |++|..|+.|.+.-|++. .++...+..+++|..|.+..|.+...-...|..+..++.+.+..|.+..     ..+++.+
T Consensus       136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wl  209 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWL  209 (498)
T ss_pred             hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchh
Confidence            666666666666666665 4554444446666666666666653323355566666666655554321     1111111


Q ss_pred             ceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccc
Q 002167          312 SFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS  391 (957)
Q Consensus       312 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~  391 (957)
                      ... +.      ..|..++...-..-..+.+.++.. ++...|.                        .....+.+=..+
T Consensus       210 a~~-~a------~~~ietsgarc~~p~rl~~~Ri~q-~~a~kf~------------------------c~~esl~s~~~~  257 (498)
T KOG4237|consen  210 ADD-LA------MNPIETSGARCVSPYRLYYKRINQ-EDARKFL------------------------CSLESLPSRLSS  257 (498)
T ss_pred             hhH-Hh------hchhhcccceecchHHHHHHHhcc-cchhhhh------------------------hhHHhHHHhhcc
Confidence            111 00      011111111111111111111110 0000000                        000011111111


Q ss_pred             cc-cCCCcCh-hhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCC
Q 002167          392 AC-NISEFPD-NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSL  469 (957)
Q Consensus       392 ~~-~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  469 (957)
                      .| .....|. .+..+++|+.|++++|++++.-+.+|...  ..+++|.|..|++..+....|..|              
T Consensus       258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N~l~~v~~~~f~~l--------------  321 (498)
T KOG4237|consen  258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRNKLEFVSSGMFQGL--------------  321 (498)
T ss_pred             ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch--hhhhhhhcCcchHHHHHHHhhhcc--------------
Confidence            22 1123332 37788888999999998888777777654  888888888888888777666655              


Q ss_pred             CCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCc
Q 002167          470 PDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS  511 (957)
Q Consensus       470 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  511 (957)
                          ..|+.|++++|+++...|.+|..+..|.+|++-.|.+.
T Consensus       322 ----s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  322 ----SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             ----ccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence                56777888888888888888988899999998887653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=1.8e-22  Score=206.56  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             ccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCc
Q 002167          565 LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLE  643 (957)
Q Consensus       565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  643 (957)
                      |..+++|++|++++|++++.-+.++.. ..+++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            556666666666666666555555543 6666666666666655556677777777777777777777777777777777


Q ss_pred             EEeCCCCccc
Q 002167          644 VLDVGNNQID  653 (957)
Q Consensus       644 ~L~ls~n~l~  653 (957)
                      +|++-.|.+.
T Consensus       350 ~l~l~~Np~~  359 (498)
T KOG4237|consen  350 TLNLLSNPFN  359 (498)
T ss_pred             eeehccCccc
Confidence            7777776653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.3e-18  Score=202.05  Aligned_cols=247  Identities=23%  Similarity=0.330  Sum_probs=149.6

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      .+.+.|+++++.++ .+|..+.   ++|+.|+|++|.++ .+|..+.  .+|++|++++|+++ .+|..+.   .+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            35667777777777 6776553   36777777777776 3454443  47777777777776 5666554   467777


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  297 (957)
                      +|++|.+. .+|..+.  ++|++|++++|+++ .+|..+.   ++|+.|++++|++++ +|..+.  ++|+.|++++|.+
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL  316 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc
Confidence            77777776 4555543  46777777777776 5666543   467778888777773 454432  3677777888777


Q ss_pred             cccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccccccc
Q 002167          298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT  377 (957)
Q Consensus       298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  377 (957)
                      +. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++.. ++.. +  .++|+.|++++|.+.....  
T Consensus       317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~-l--p~~L~~LdLs~N~Lt~LP~--  384 (754)
T PRK15370        317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPET-L--PPTITTLDVSRNALTNLPE--  384 (754)
T ss_pred             cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChh-h--cCCcCEEECCCCcCCCCCH--
Confidence            64 44433  2577788888887764 555443  578888888877652 2211 1  2455666666555321110  


Q ss_pred             CCCccccccccccccccCCCcChhhhc----CCCCCEEECcCCcCC
Q 002167          378 ANSSFPNLSALDLSACNISEFPDNLRT----QHQLELLDLSENQIG  419 (957)
Q Consensus       378 ~~~~l~~L~~L~L~~~~l~~lp~~l~~----~~~L~~L~Ls~n~l~  419 (957)
                      .  -...|+.|++++|++..+|..+..    .+.+..+++.+|.+.
T Consensus       385 ~--l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        385 N--LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             h--HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            0  112455566666665555543322    244455555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.1e-18  Score=206.12  Aligned_cols=263  Identities=26%  Similarity=0.400  Sum_probs=161.6

Q ss_pred             ccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCC
Q 002167          387 ALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ  466 (957)
Q Consensus       387 ~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~  466 (957)
                      .|+++++.++.+|..+.  +.++.|++++|.++ .+|..+.    .+|+.|++++|.++.++.....+|+.|++++|.+.
T Consensus       182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~  254 (754)
T PRK15370        182 ELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT  254 (754)
T ss_pred             EEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhccccEEECcCCccC
Confidence            34444444444444332  34555555555554 3343321    34555555555555554433345566666666555


Q ss_pred             CCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCC
Q 002167          467 GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK  546 (957)
Q Consensus       467 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  546 (957)
                      .....++.+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+. .+|+.|++++|+++. +|..+.  ++
T Consensus       255 ~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~s  326 (754)
T PRK15370        255 ELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--PG  326 (754)
T ss_pred             cCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--cc
Confidence            322223456777777777776 3555443  478888888888773 454332 367888888888874 343332  57


Q ss_pred             ccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCC
Q 002167          547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN  626 (957)
Q Consensus       547 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  626 (957)
                      |+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.  ..|+.|++++|
T Consensus       327 L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        327 LKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQASRN  398 (754)
T ss_pred             ceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccC
Confidence            8888888888875 565553  68888888888887 5665442 67888888888888 4555543  36888888888


Q ss_pred             cCccCCCccc----cCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccC
Q 002167          627 RLKGPLPPSL----VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI  680 (957)
Q Consensus       627 ~l~~~~p~~l----~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~  680 (957)
                      +++ .+|..+    ..++.+..|++.+|+++.      ..+.+|+.| ++.+.+.|++
T Consensus       399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~  448 (754)
T PRK15370        399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPR  448 (754)
T ss_pred             Ccc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCc
Confidence            887 455543    345778888888888763      344555555 4455555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.3e-18  Score=191.96  Aligned_cols=84  Identities=23%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             ccceEEEcccCccCccCcccccc-----cCCCcEEECCCCcCC----CCCchhhhhccCCCEEECCCCccccc----Ccc
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGK-----LNSLKSLNISHNNLT----GCIPSSLRNLTELESLDLSSNKLAGR----IPT  824 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~L~~L~~L~Ls~N~l~g~----ip~  824 (957)
                      ++|+.|++++|.+++.....+..     .+.|+.|++++|.++    ..+...+..+++|+++|+++|+++..    +..
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            44555555555554422222211     245555555555554    12233344445555555555555533    222


Q ss_pred             cCcCC-CCCCeEECccCc
Q 002167          825 QLASL-NYLSVLNLSNNQ  841 (957)
Q Consensus       825 ~l~~l-~~L~~L~ls~N~  841 (957)
                      .+... ..|+++|+.+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         301 SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhhcCCchhhcccCCCC
Confidence            33333 445555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=1.2e-17  Score=184.01  Aligned_cols=202  Identities=21%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             eeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc----CchhhhhcCCCCCEEEccCCcCCC------CcchhccCC
Q 002167          117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS----IPPSLGNNITQLAYLDLSINSFIG------HIPSSFSNL  186 (957)
Q Consensus       117 L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~----ip~~l~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l  186 (957)
                      |+|.++.+++......+ ..++.|++|+++++.+++.    ++..+.. .+.|++|+++++.+.+      .++..+..+
T Consensus         3 l~L~~~~l~~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELL-PKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHH-HHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            34444444433333222 4455555555555555321    2333332 4455555555554431      123344455


Q ss_pred             CCCCEEEccCCcCCCCCchhhhhCCCC---CcEEEccCCCCCC----CCCcccCCC-CcccEEeccCCCCccccch----
Q 002167          187 HQLRHLDLQSNNFVGKIPASLGNNITQ---LAYLDLSSNSFSG----HIPSSFSNL-QQLCYLDLDDNHFVGEIPA----  254 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~----  254 (957)
                      ++|++|++++|.+.+..+..+. .+.+   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++....    
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            5555555555555433333332 2222   5555555555542    112223344 5556666666655532221    


Q ss_pred             hHhhhccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCceeeccCCcCC
Q 002167          255 SLGNNITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       255 ~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      .+.. +++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    +...+..+++|++|++++|.++
T Consensus       160 ~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         160 ALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            1221 44566666666555531    222233444566666665555422    2223344555555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.6e-18  Score=156.20  Aligned_cols=166  Identities=26%  Similarity=0.519  Sum_probs=129.9

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      .++.+.+.+.|.||+|.++.  +|+.+ ..+.+|++|++++|++. ++|.++.. +++|+.|+++-|++. .+|..|+.+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppni-a~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNI-AELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcH-HHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCC
Confidence            56677788888888888864  67777 78888888888888887 88888887 888888888888776 678888888


Q ss_pred             CCCCEEEccCCcCCC-CCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcE
Q 002167          187 HQLRHLDLQSNNFVG-KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY  265 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~-~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~  265 (957)
                      +.|++|||.+|++.. .+|..++ .++.|+.|.|++|.+. .+|..++++++|+.|.+++|.+. .+|.+++. ++.|++
T Consensus       102 p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lre  177 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRE  177 (264)
T ss_pred             chhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHH
Confidence            888888888887753 5677777 7778888888888877 66777888888888888888777 77777776 777777


Q ss_pred             EECcCCcCCccCcccccC
Q 002167          266 LDLSSNGFSGHIPSSFSN  283 (957)
Q Consensus       266 L~Ls~n~l~~~~p~~l~~  283 (957)
                      |++.+|+++ .+|..+++
T Consensus       178 lhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             Hhcccceee-ecChhhhh
Confidence            777777776 44544444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=2.4e-17  Score=150.00  Aligned_cols=163  Identities=29%  Similarity=0.475  Sum_probs=90.3

Q ss_pred             CCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167          136 QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA  215 (957)
Q Consensus       136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~  215 (957)
                      .+.+++.|.||.|+++ .+|+.+.. +.+|++|++++|++. .+|..++.+++|++|+++-|++.               
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------------   92 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------------   92 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------------
Confidence            4455555666666665 55666655 566666666655554 44445555555555555555444               


Q ss_pred             EEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167          216 YLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY  294 (957)
Q Consensus       216 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  294 (957)
                                 ..|..|+.++.|++||+.+|++.. .+|..++. +..|+.|.++.|.+. .+|..++++++|+.|.+..
T Consensus        93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen   93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD  159 (264)
T ss_pred             -----------cCccccCCCchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence                       444455555555555555554432 34445544 555555556655555 5555566666666666666


Q ss_pred             CcCcccCCccccccCcCceeeccCCcCCCCCCcchhc
Q 002167          295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE  331 (957)
Q Consensus       295 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  331 (957)
                      |.+. .+|..++.++.|++|.+.+|.++ .+|+.++.
T Consensus       160 ndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  160 NDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             Cchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            6555 45566666666666666666665 44544443

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=6.5e-15  Score=174.04  Aligned_cols=118  Identities=36%  Similarity=0.630  Sum_probs=105.4

Q ss_pred             cceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECc
Q 002167          759 TFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS  838 (957)
Q Consensus       759 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls  838 (957)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCCC--CCcccCCcccCCcCCCCCCCCCCCC
Q 002167          839 NNQLEGPIPGGPQ--FNTFGNDSYSGNSGLCGFPLSKSCS  876 (957)
Q Consensus       839 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~  876 (957)
                      +|+++|.+|....  +.......+.||+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  1122345678999999977556674

>PLN03150 hypothetical protein; Provisional

Probab=99.49  E-value=2.3e-13  Score=160.91  Aligned_cols=152  Identities=34%  Similarity=0.611  Sum_probs=99.2

Q ss_pred             CCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCc----cccceEecCC--C--CcEEEEEcCCCC
Q 002167           26 ILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCC----SWDGVTCDSA--T--GHVIGLDLSCSW   97 (957)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~~--~--~~v~~l~L~~~~   97 (957)
                      ..+.++|.+||+++|+.+..+.                ..+|.. ..||    .|.||.|...  .  .+|+.|+|++++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~----------------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~  429 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL----------------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG  429 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc----------------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCC
Confidence            3567789999999999986432                247964 3332    7999999532  1  247777777776


Q ss_pred             CccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCC
Q 002167           98 LHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG  177 (957)
Q Consensus        98 l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~  177 (957)
                      +.|.+|+                           .+ +.+++|+.|+|++|.+.|.+|..+.. +++|++|+|++|.+.+
T Consensus       430 L~g~ip~---------------------------~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        430 LRGFIPN---------------------------DI-SKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNG  480 (623)
T ss_pred             ccccCCH---------------------------HH-hCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCC
Confidence            6665544                           34 55666666666666666666666665 6667777777776666


Q ss_pred             CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCC
Q 002167          178 HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS  223 (957)
Q Consensus       178 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~  223 (957)
                      .+|..++++++|++|+|++|.++|.+|..+.....++..+++.+|.
T Consensus       481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            6666666667777777777766666666665323445555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=1.4e-12  Score=140.81  Aligned_cols=173  Identities=28%  Similarity=0.467  Sum_probs=100.0

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      +--...||+.|++. ++|..+.. +..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ .+|..++ .+ -|+.|
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvl  148 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVL  148 (722)
T ss_pred             cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeE
Confidence            33344566666665 66665555 556666666666554 45555666666666666666665 5565554 33 36666


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  297 (957)
                      -+++|+++ .+|..++.+.+|..||.+.|++. .+|..++. +.+|+.|.+..|++. .+|..+..+ .|..||++.|++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            66666665 55555665566666666666665 55555554 566666666666655 344444432 355566666655


Q ss_pred             cccCCccccccCcCceeeccCCcCC
Q 002167          298 VGKIPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       298 ~~~~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      . .+|-.|.+|+.|++|-|.+|.+.
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC
Confidence            5 45555666666666666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=2.6e-12  Score=138.62  Aligned_cols=196  Identities=29%  Similarity=0.442  Sum_probs=164.9

Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167          109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ  188 (957)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  188 (957)
                      -.+..-...||+.|.+..  +|..+ ..+..|+.+.|..|.+. .+|..+++ +..|.+|||+.|+++ .+|..+..|+ 
T Consensus        72 ~~ltdt~~aDlsrNR~~e--lp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-  144 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSE--LPEEA-CAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-  144 (722)
T ss_pred             ccccchhhhhcccccccc--CchHH-HHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-
Confidence            345556778999999865  67666 77888999999999998 99999998 999999999999987 6677777765 


Q ss_pred             CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEEC
Q 002167          189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL  268 (957)
Q Consensus       189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L  268 (957)
                      |+.|-+++|+++ .+|..++ .+..|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|+.+.  .-.|..||+
T Consensus       145 Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDf  218 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDF  218 (722)
T ss_pred             ceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeec
Confidence            999999999998 8999998 8999999999999998 77888999999999999999998 8999887  346899999


Q ss_pred             cCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccc---cCcCceeeccCC
Q 002167          269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN---LTQLSFLGLAYN  319 (957)
Q Consensus       269 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n  319 (957)
                      +.|+++ .+|-.|.+|+.|++|.|.+|.+.. .|..+..   ..--++|+..-|
T Consensus       219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence            999999 889999999999999999999973 4444432   222345555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=2.9e-10  Score=129.07  Aligned_cols=175  Identities=37%  Similarity=0.531  Sum_probs=78.7

Q ss_pred             CCCCCEEEccCCcCCCCcchhccCCC-CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccE
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFSNLH-QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY  240 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  240 (957)
                      ++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+. .+++|+.|++++|+++ .+|...+.++.|+.
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN  190 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence            344444555444444 2233333332 4555555555444 3333333 4455555555555544 22333334445555


Q ss_pred             EeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCc
Q 002167          241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE  320 (957)
Q Consensus       241 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  320 (957)
                      |++++|++. .+|..+.. ...|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..++.++.++.|++++|.
T Consensus       191 L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         191 LDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             eeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence            555555554 44444322 334555555555322 233344444555555544444432 13444445555555555555


Q ss_pred             CCCCCCcchhcccCCceEecCCCCCc
Q 002167          321 LIGSIPSSIFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       321 l~~~~p~~l~~l~~L~~L~L~~n~l~  346 (957)
                      ++. ++. ++.+.+++.|++++|.+.
T Consensus       267 i~~-i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         267 ISS-ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccc-ccc-ccccCccCEEeccCcccc
Confidence            442 222 444555555555554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.9e-10  Score=130.48  Aligned_cols=199  Identities=36%  Similarity=0.521  Sum_probs=159.3

Q ss_pred             eeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCC-CCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167          116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT-QLAYLDLSINSFIGHIPSSFSNLHQLRHLDL  194 (957)
Q Consensus       116 ~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  194 (957)
                      .++++.+.+...  ...+ ..++.++.|++.+|.++ .+|..... +. +|+.|++++|.+. .+|..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~--~~~~-~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSN--ISEL-LELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccC--chhh-hcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhcccccccccc
Confidence            577777766332  2233 55678999999999998 88888775 64 8999999999887 45566889999999999


Q ss_pred             cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCC
Q 002167          195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~  274 (957)
                      ++|++. .+|...+ ..+.|+.|++++|.++ .+|..+.....|++|.+++|... .++..+.. +.++..+.+.+|++.
T Consensus       171 ~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~  245 (394)
T COG4886         171 SFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLE  245 (394)
T ss_pred             CCchhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceee
Confidence            999998 7777665 7899999999999998 56666667778999999999654 56666665 888999998888887


Q ss_pred             ccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcc
Q 002167          275 GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS  328 (957)
Q Consensus       275 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  328 (957)
                       ..+..++.++++++|++++|.++...+  ++.+.+++.|++++|.+....+..
T Consensus       246 -~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         246 -DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence             346788899999999999999985433  889999999999999988665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.6e-11  Score=123.88  Aligned_cols=212  Identities=26%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCC--cccCCCCcccEEeccCCCCccccchhHhhhcc
Q 002167          184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP--SSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT  261 (957)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~  261 (957)
                      .++.+|+...|.++...........+.|++++.|||++|-+....|  .....+++|+.|+++.|++..........   
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---  194 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---
Confidence            4566666666666655421111233356666666666665543211  11234455555555555443222111111   


Q ss_pred             CCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCccc-CCccccccCcCceeeccCCcCCCCCCcchhcccCCceEec
Q 002167          262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL  340 (957)
Q Consensus       262 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  340 (957)
                                           .+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+..|++|+|
T Consensus       195 ---------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  195 ---------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             ---------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                                 334455555555554421 1112234455555555555322111122223445555555


Q ss_pred             CCCCCcccccchhhhcCCCCcEEEcccccccccccccC-----CCccccccccccccccCCCcCh--hhhcCCCCCEEEC
Q 002167          341 SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA-----NSSFPNLSALDLSACNISEFPD--NLRTQHQLELLDL  413 (957)
Q Consensus       341 ~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~l~~L~~L~L~~~~l~~lp~--~l~~~~~L~~L~L  413 (957)
                      ++|++.........+.++.|+.|+++.+.+........     ...+++|++|++..|++.+++.  .+..+++|+.|.+
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            55555433333344455555555555555433322222     2345666666666666654442  2444455555555


Q ss_pred             cCCcCC
Q 002167          414 SENQIG  419 (957)
Q Consensus       414 s~n~l~  419 (957)
                      ..|.+.
T Consensus       334 ~~n~ln  339 (505)
T KOG3207|consen  334 TLNYLN  339 (505)
T ss_pred             cccccc
Confidence            555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=8.6e-11  Score=123.49  Aligned_cols=185  Identities=24%  Similarity=0.191  Sum_probs=127.1

Q ss_pred             cCCCCCEEEccCCcCCCCcc--hhccCCCCCCEEEccCCcCCCCCc-hhhhhCCCCCcEEEccCCCCCCCCCcc-cCCCC
Q 002167          161 NITQLAYLDLSINSFIGHIP--SSFSNLHQLRHLDLQSNNFVGKIP-ASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQ  236 (957)
Q Consensus       161 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~  236 (957)
                      ++.+|+.+.|.++.+. ..+  .....|++++.|||+.|-+..-.+ ..+.+.+++|+.|+|+.|.+....... -..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            3889999999988764 223  356789999999999997653222 345568999999999999986332221 13578


Q ss_pred             cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC-CccccccCcCceee
Q 002167          237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLG  315 (957)
Q Consensus       237 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~  315 (957)
                      +|+.|.++.|.++-.--..+...+++|+.|+|..|............+..|++|+|++|.+.... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            99999999999984444445555899999999999643344444566788999999998876421 13467788888888


Q ss_pred             ccCCcCCCC-CCcc-----hhcccCCceEecCCCCCc
Q 002167          316 LAYNELIGS-IPSS-----IFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       316 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~  346 (957)
                      ++.+.+... .|+.     ....++|++|++..|++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            888876532 2221     223444555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=1e-10  Score=119.87  Aligned_cols=39  Identities=28%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             CCCCCEEEccCCcCCCCcch----hccCCCCCCEEEccCCcCC
Q 002167          162 ITQLAYLDLSINSFIGHIPS----SFSNLHQLRHLDLQSNNFV  200 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~  200 (957)
                      +++|++||||+|.+....+.    .+..+..|++|.|.+|.+.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            45677777777765433332    2345667777777766553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=2e-09  Score=104.19  Aligned_cols=128  Identities=28%  Similarity=0.339  Sum_probs=45.4

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      .+..++++|+|.+|.|+ .|. .++..+.+|+.|+|++|.++.. + .+..+++|++|++++|+++ .+...+...+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            45556788888888776 443 4543377888888888887743 2 4777888888888888887 4555554467888


Q ss_pred             cEEEccCCCCCCCC-CcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEEC
Q 002167          215 AYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDL  268 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~L  268 (957)
                      ++|++++|+|...- -..++.+++|++|++.+|.+.. .+.   .+...+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            88888888886421 2345667788888888887762 231   22233677777664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=2.3e-09  Score=129.62  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChh
Q 002167          382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSW  425 (957)
Q Consensus       382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~  425 (957)
                      ++++..+.+.+|.....+.|..-.++|+.|.+..+.....+.+.
T Consensus       746 f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  746 FPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             HHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence            55666666666666666666666778888888877665554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=4e-10  Score=112.38  Aligned_cols=134  Identities=25%  Similarity=0.269  Sum_probs=79.3

Q ss_pred             CCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCcee
Q 002167          235 LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL  314 (957)
Q Consensus       235 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  314 (957)
                      ...|+++|+++|.++ .+.+++.- .+.++.|++++|.+...  ..++.+++|+.|||++|.++ .+..+-..+.++++|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            455677777777766 66666654 66777777777776632  23666667777777777665 233344456666666


Q ss_pred             eccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcccccccccccccc
Q 002167          315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACN  394 (957)
Q Consensus       315 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  394 (957)
                      .|++|.+..  -+.++++-+|..||+++|++.                         ..........+|.|+.+.+.+|.
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-------------------------~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-------------------------ELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheeccccccchh-------------------------hHHHhcccccccHHHHHhhcCCC
Confidence            666666531  133445555555555555554                         33344444556666666666666


Q ss_pred             CCCcCh
Q 002167          395 ISEFPD  400 (957)
Q Consensus       395 l~~lp~  400 (957)
                      +..+++
T Consensus       411 l~~~vd  416 (490)
T KOG1259|consen  411 LAGSVD  416 (490)
T ss_pred             ccccch
Confidence            665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.89  E-value=5.5e-10  Score=114.53  Aligned_cols=141  Identities=21%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             hccCCCCCCEEEccCCcCCCCCchhh---hhCCCCCcEEEccCCCCCCCCCc-------------ccCCCCcccEEeccC
Q 002167          182 SFSNLHQLRHLDLQSNNFVGKIPASL---GNNITQLAYLDLSSNSFSGHIPS-------------SFSNLQQLCYLDLDD  245 (957)
Q Consensus       182 ~l~~l~~L~~L~L~~n~l~~~~p~~l---~~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~L~~L~Ls~  245 (957)
                      .+.++++|++|+||+|.+....+..+   .+.+..|++|.|.+|.+.-..-.             ..+.-++|+++....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            45567788888888887764444332   23677788888888776422111             123345666666666


Q ss_pred             CCCccccc---hhHhhhccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCcee
Q 002167          246 NHFVGEIP---ASLGNNITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFL  314 (957)
Q Consensus       246 n~l~~~ip---~~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L  314 (957)
                      |++...-.   ...++..+.|+.+.++.|.|...    +...+..+++|+.|||.+|.++..    +...+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            66542111   11222345666666666655421    223345566666666666655421    22334445555555


Q ss_pred             eccCCcCC
Q 002167          315 GLAYNELI  322 (957)
Q Consensus       315 ~L~~n~l~  322 (957)
                      ++++|.+.
T Consensus       247 ~l~dcll~  254 (382)
T KOG1909|consen  247 NLGDCLLE  254 (382)
T ss_pred             cccccccc
Confidence            55555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.7e-09  Score=104.61  Aligned_cols=122  Identities=26%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             CCccEEEccCCcCCCCCCcccc-CCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCcccc-ccCCCccEEE
Q 002167          545 CKLTYLRLSGNHLEGPLPPSLT-NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF-AKSCVLVSLN  622 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~  622 (957)
                      .++++|+|++|.|+..  +.++ .+.+|+.|++++|.++ .++..-..+.|++|++++|+|+.. ++.+ ..+++|++|+
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            3455555555555532  2333 3456666666666665 333322335666666666666633 2223 3466666666


Q ss_pred             ccCCcCccCC-CccccCCCCCcEEeCCCCccccCc---cccccccccccEEE
Q 002167          623 LNGNRLKGPL-PPSLVNCQYLEVLDVGNNQIDDTF---PYWLDVLLELQVLI  670 (957)
Q Consensus       623 Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~L~  670 (957)
                      +++|++...- -..+..+++|+.|++.+|+++...   ...+..+|+|+.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            6666665421 134556666666666666665431   11344555665555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=2.8e-09  Score=128.86  Aligned_cols=204  Identities=26%  Similarity=0.363  Sum_probs=124.7

Q ss_pred             CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC--CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCC
Q 002167          210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH--FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL  287 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  287 (957)
                      +....+...+-+|.+. .++... ..++|++|-+..|.  +. .++..++..++.|++|||++|.-.+.+|..++.+-+|
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            3456677777776664 223322 23467777777775  33 6666666668888888888777666788888888888


Q ss_pred             cEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCC-cccccchhhhcCCCCcEEEcc
Q 002167          288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNF-SGSVELYDFAKLKNLKVLSLS  366 (957)
Q Consensus       288 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~~l~~l~~L~~L~L~  366 (957)
                      ++|++++..+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+..... .+......+..+..|+.+...
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            88888888777 6777788888888888887765555566666688888888766541 122223334445555555553


Q ss_pred             cccccccccccCCCcccccc----ccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167          367 NISLSVSTKLTANSSFPNLS----ALDLSACNISEFPDNLRTQHQLELLDLSENQIGG  420 (957)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~L~----~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~  420 (957)
                      ....   .........+.|.    .+.+..+.....+..+..+.+|+.|.+.++.+..
T Consensus       677 ~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  677 ISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             cchh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence            3321   1111112222222    3333334444555566667777777777776653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=6.4e-10  Score=110.92  Aligned_cols=129  Identities=29%  Similarity=0.334  Sum_probs=81.2

Q ss_pred             ccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEe
Q 002167          260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIY  339 (957)
Q Consensus       260 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  339 (957)
                      ...|+++||++|.|+ .+.++..-.+.++.|++++|.+...  ..+..+.+|+.|||++|.++ .+..+-.+        
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K--------  350 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLK--------  350 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhh--------
Confidence            345666666666665 4445555566666666666666532  22555666666666666554 22222233        


Q ss_pred             cCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcCh--hhhcCCCCCEEECcCCc
Q 002167          340 LSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD--NLRTQHQLELLDLSENQ  417 (957)
Q Consensus       340 L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~--~l~~~~~L~~L~Ls~n~  417 (957)
                                       +.+++.|.+++|.+   ........+-+|..|++++|+|.++.+  .++++|-|+++.+.+|.
T Consensus       351 -----------------LGNIKtL~La~N~i---E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  351 -----------------LGNIKTLKLAQNKI---ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -----------------hcCEeeeehhhhhH---hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence                             44455555555542   233445566788999999999877643  58899999999999999


Q ss_pred             CCC
Q 002167          418 IGG  420 (957)
Q Consensus       418 l~~  420 (957)
                      +.+
T Consensus       411 l~~  413 (490)
T KOG1259|consen  411 LAG  413 (490)
T ss_pred             ccc
Confidence            974

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=6.5e-09  Score=82.54  Aligned_cols=60  Identities=47%  Similarity=0.657  Sum_probs=34.5

Q ss_pred             CCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcc
Q 002167          783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL  842 (957)
Q Consensus       783 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l  842 (957)
                      +|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555554445555566666666666666555555556666666666666553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=9.7e-09  Score=81.52  Aligned_cols=61  Identities=38%  Similarity=0.624  Sum_probs=57.3

Q ss_pred             ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcc
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL  818 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l  818 (957)
                      ++|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999988888999999999999999999998889999999999999999986

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.68  E-value=1.8e-08  Score=72.92  Aligned_cols=40  Identities=40%  Similarity=0.815  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCC--CCCccccceEec
Q 002167           30 HDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKED--ADCCSWDGVTCD   82 (957)
Q Consensus        30 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~c~   82 (957)
                      ++|++||++||+++..++.             ..+.+|...  ++||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~-------------~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS-------------GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC--------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC-------------cccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999986543             389999886  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=4.6e-09  Score=119.27  Aligned_cols=85  Identities=29%  Similarity=0.347  Sum_probs=57.0

Q ss_pred             ceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccccc---Cccc-CcCCCCCCeE
Q 002167          760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR---IPTQ-LASLNYLSVL  835 (957)
Q Consensus       760 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~L  835 (957)
                      |+.+++++|.+.. +++.+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ......+...
T Consensus       234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            5667777777753 235666777888888888887754  2355666777777777776522   1121 4566778888


Q ss_pred             ECccCcccccCC
Q 002167          836 NLSNNQLEGPIP  847 (957)
Q Consensus       836 ~ls~N~l~g~ip  847 (957)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888888776655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=2.1e-08  Score=113.93  Aligned_cols=198  Identities=32%  Similarity=0.385  Sum_probs=92.0

Q ss_pred             CCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCc
Q 002167          185 NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA  264 (957)
Q Consensus       185 ~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~  264 (957)
                      .+..++.++++.|.+. .+-..+. .+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+.. +.. ++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~-l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG-LST-LTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc-hhh-ccchh
Confidence            3445555556666554 2122222 455566666666655532 111444555555555555554 2211 111 34455


Q ss_pred             EEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCC
Q 002167          265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN  344 (957)
Q Consensus       265 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  344 (957)
                      .|++++|.+...  ..+..++.|+.+++++|.+...-+ .                      . ...+.+++.+++..|.
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~----------------------~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-D----------------------E-LSELISLEELDLGGNS  197 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-h----------------------h-hhhccchHHHhccCCc
Confidence            555555554421  223334444555555554443222 0                      1 2344444444444444


Q ss_pred             CcccccchhhhcCCCCcEEEcccccccccccccCCCccc--cccccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167          345 FSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP--NLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG  420 (957)
Q Consensus       345 l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~--~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~  420 (957)
                      +.....   +..+..+..+++..|.+...   ......+  +|+.+++.++.+..++..+..+..+..+++.+|++..
T Consensus       198 i~~i~~---~~~~~~l~~~~l~~n~i~~~---~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  198 IREIEG---LDLLKKLVLLSLLDNKISKL---EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             hhcccc---hHHHHHHHHhhcccccceec---cCcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence            431111   11222222234444432221   1112222  3677777777777666666667777777777777653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=6.7e-09  Score=103.91  Aligned_cols=108  Identities=20%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC-CccccchhHhhhccCCcEE
Q 002167          188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVGEIPASLGNNITQLAYL  266 (957)
Q Consensus       188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L  266 (957)
                      .|++|||+...++..--..+...|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..--..+..+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477777776666533333333466777777777777776666666667777777777654 3322223344446667777


Q ss_pred             ECcCCcCCccCcccc-cC-cCCCcEEEeccC
Q 002167          267 DLSSNGFSGHIPSSF-SN-LQQLLWLNLEYN  295 (957)
Q Consensus       267 ~Ls~n~l~~~~p~~l-~~-l~~L~~L~L~~n  295 (957)
                      ++++|.+.......+ .. -++|+.|+++++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            777766553322111 11 134555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.46  E-value=7.2e-09  Score=108.74  Aligned_cols=212  Identities=19%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCC-ccCccCchhhhhcCCCCCEEEccCCc-CCC-CcchhccC
Q 002167          109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC-NFTGSIPPSLGNNITQLAYLDLSINS-FIG-HIPSSFSN  185 (957)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~  185 (957)
                      ..++++++|++.++.......-..+...+++|++|+|..| .++...-..+...+++|++|+++.+. +++ .+.....+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            3455555555555432111111122244555555555553 23322223344445555555555552 221 11222334


Q ss_pred             CCCCCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCC-CCCCCC-cccCCCCcccEEeccCCCC-ccccchhHhhhcc
Q 002167          186 LHQLRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNS-FSGHIP-SSFSNLQQLCYLDLDDNHF-VGEIPASLGNNIT  261 (957)
Q Consensus       186 l~~L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l-~~~ip~~l~~~l~  261 (957)
                      +..++.+.+.+|.=. ......+...+..+..+++.++. +++..- ..=..+..|++|+.+++.. +...-..++++..
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            444555544444211 00001111123334444444442 221110 0112345566666655432 2222234444555


Q ss_pred             CCcEEECcCCcC-CccCcccc-cCcCCCcEEEeccCcCcc--cCCccccccCcCceeeccCCc
Q 002167          262 QLAYLDLSSNGF-SGHIPSSF-SNLQQLLWLNLEYNNFVG--KIPDMFTNLTQLSFLGLAYNE  320 (957)
Q Consensus       262 ~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~  320 (957)
                      +|+.|.++.++- +..-...+ .+++.|+.+++..+....  .+...-.+++.|+.+.+++|.
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence            666666665542 21111112 134555555555554321  111112245555555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.7e-08  Score=101.02  Aligned_cols=179  Identities=20%  Similarity=0.156  Sum_probs=98.4

Q ss_pred             CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCCCCCcEE
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L  217 (957)
                      +|++||||+..++-.--..+...+.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. ++..-..-+..+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577777777766532222333337777777777777777777777777777777777664 3322233344567777777


Q ss_pred             EccCCCCCCCCCcc-cCC-CCcccEEeccCCCC--ccccchhHhhhccCCcEEECcCCc-CCccCcccccCcCCCcEEEe
Q 002167          218 DLSSNSFSGHIPSS-FSN-LQQLCYLDLDDNHF--VGEIPASLGNNITQLAYLDLSSNG-FSGHIPSSFSNLQQLLWLNL  292 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~-l~~-l~~L~~L~Ls~n~l--~~~ip~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L  292 (957)
                      +|+.|.++...... +.. -.+|..|+++++.-  ...--..+...+++|.+|||++|. ++......|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77777654322111 111 14566666666531  111112333346777777777654 23223334556666666666


Q ss_pred             ccCcCcccCCcc---ccccCcCceeeccCC
Q 002167          293 EYNNFVGKIPDM---FTNLTQLSFLGLAYN  319 (957)
Q Consensus       293 ~~n~l~~~~p~~---l~~l~~L~~L~L~~n  319 (957)
                      +.|..  .+|..   +...+.|.+|++.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66642  33432   233445555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=4.7e-08  Score=109.02  Aligned_cols=176  Identities=30%  Similarity=0.366  Sum_probs=80.6

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccC----------ccCchhhhhcCCCCCEEEccCCcCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFT----------GSIPPSLGNNITQLAYLDLSINSFI  176 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~----------~~ip~~l~~~l~~L~~L~Ls~n~l~  176 (957)
                      +++.|+.||+|.|.++++...   .++..--..|++|-.++. +.          |.+..+..  -..|.+.+.++|.+.
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPV--WNKLATASFSYNRLV  177 (1096)
T ss_pred             eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchh--hhhHhhhhcchhhHH
Confidence            678889999999998887532   111010112222222211 00          11111111  013444555555544


Q ss_pred             CCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCc-ccCCCCcccEEeccCCCCccccchh
Q 002167          177 GHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPAS  255 (957)
Q Consensus       177 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~  255 (957)
                       .+..++.-++.|++|+|++|++.. +. .+. .+++|++|||++|.+.. +|. ....+. |+.|.+++|.++ .+ ..
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~-v~-~Lr-~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~-tL-~g  249 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTK-VD-NLR-RLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALT-TL-RG  249 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhh-hH-HHH-hcccccccccccchhcc-ccccchhhhh-heeeeecccHHH-hh-hh
Confidence             333444555555555665555542 11 332 55556666666655552 222 122222 555566655554 11 12


Q ss_pred             HhhhccCCcEEECcCCcCCccC-cccccCcCCCcEEEeccCcC
Q 002167          256 LGNNITQLAYLDLSSNGFSGHI-PSSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       256 l~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l  297 (957)
                      +.+ +++|+.||+++|-+.+.- -.-+..+..|+.|.|.+|.+
T Consensus       250 ie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 IEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            333 555556666655554321 11233444555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=8.5e-08  Score=106.99  Aligned_cols=179  Identities=28%  Similarity=0.291  Sum_probs=94.2

Q ss_pred             chhhhhCCCCCcEEEccCCCCCCCCCcccCCC-CcccEEeccCCCCc----------cccchhHhhhccCCcEEECcCCc
Q 002167          204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNL-QQLCYLDLDDNHFV----------GEIPASLGNNITQLAYLDLSSNG  272 (957)
Q Consensus       204 p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~ip~~l~~~l~~L~~L~Ls~n~  272 (957)
                      |..++ ...+|++|.|.++.+...  ..+..+ .+|++|.-.+ .+.          |++..+..  .-.|...+.++|.
T Consensus       102 pi~if-pF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIF-PFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV--WNKLATASFSYNR  175 (1096)
T ss_pred             Cceec-cccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh--hhhHhhhhcchhh
Confidence            66777 788999999999887531  111111 1233332211 110          11111111  2245555556666


Q ss_pred             CCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCc-chhcccCCceEecCCCCCcccccc
Q 002167          273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPS-SIFELLNLTEIYLSFSNFSGSVEL  351 (957)
Q Consensus       273 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~  351 (957)
                      +. .+..++.-++.|+.|+|+.|+++..  +.+..+++|++|||++|.+. .+|. ....+. |+.|.+++|.++.   .
T Consensus       176 L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L  247 (1096)
T KOG1859|consen  176 LV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---L  247 (1096)
T ss_pred             HH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---h
Confidence            55 4445555666666666666666543  25566666666666666655 2222 122232 6666666665542   2


Q ss_pred             hhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCC
Q 002167          352 YDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS  396 (957)
Q Consensus       352 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  396 (957)
                      ..+.++.+|+.||++.|-+........++.+..|+.|.|.+|.+.
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            234555666666666665544444555555666666666666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.20  E-value=8.4e-08  Score=100.89  Aligned_cols=207  Identities=19%  Similarity=0.105  Sum_probs=101.8

Q ss_pred             CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCc-cCccCchhhhhcCCCCCEEEccCC-cCCCCcch-hccCCCC
Q 002167          112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCN-FTGSIPPSLGNNITQLAYLDLSIN-SFIGHIPS-SFSNLHQ  188 (957)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~  188 (957)
                      ..|+.|.+.++.-.+..-...+...++++++|++.+|. +++..-.++...+++|++|+|..| .++...-. -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            35677777776543322222333678888888888774 333333455566778888888775 23322222 2346777


Q ss_pred             CCEEEccCCc-CCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc----CCCCcccEEeccCCC-CccccchhHhhhccC
Q 002167          189 LRHLDLQSNN-FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF----SNLQQLCYLDLDDNH-FVGEIPASLGNNITQ  262 (957)
Q Consensus       189 L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~  262 (957)
                      |++|+++.|. +++.-...+..++..++.+.+.+|.=.  .-+.+    +.+..+.++++..|. ++.+--..+...+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            7777777763 343333344445556666655544211  11111    223334445544443 221111223334566


Q ss_pred             CcEEECcCCcCCc-cCccc-ccCcCCCcEEEeccCcC-cccCCccc-cccCcCceeeccCCc
Q 002167          263 LAYLDLSSNGFSG-HIPSS-FSNLQQLLWLNLEYNNF-VGKIPDMF-TNLTQLSFLGLAYNE  320 (957)
Q Consensus       263 L~~L~Ls~n~l~~-~~p~~-l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~  320 (957)
                      |+.|+.+++.-.+ ..-.. ..+..+|+.|.++.|+- +..--..+ .+...|+.+++..+.
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            6777666654321 11111 23456666666666542 11111111 234555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=1.6e-06  Score=87.30  Aligned_cols=211  Identities=19%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             CCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCc--hhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167          111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIP--PSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ  188 (957)
Q Consensus       111 l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip--~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  188 (957)
                      ..-++.|.+.++.+....-...+...+++++.+||.+|.+++ ..  ..+..++++|++|+|+.|++...+...-..+.+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            334445555566554433333344567788888888888873 22  234445888888888888876554322135668


Q ss_pred             CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCC--CcccCCC-CcccEEeccCCCCcccc-chhHhhhccCCc
Q 002167          189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI--PSSFSNL-QQLCYLDLDDNHFVGEI-PASLGNNITQLA  264 (957)
Q Consensus       189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l-~~L~~L~Ls~n~l~~~i-p~~l~~~l~~L~  264 (957)
                      |++|-|.+..+.-.-..++...++.+++|.++.|++....  .+..... +.+++|+.-.|...--. -..+.+-++++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            8888887776654444444457777888888777432111  1111111 23444444333211000 001112245555


Q ss_pred             EEECcCCcCCcc-CcccccCcCCCcEEEeccCcCccc-CCccccccCcCceeeccCCcCC
Q 002167          265 YLDLSSNGFSGH-IPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       265 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      .+-+..|.+... .......++.+-.|+|+.+++... --+.+..++.|..|.++++.+.
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            555555554321 122334445555556665555421 1123445555555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.7e-07  Score=90.96  Aligned_cols=86  Identities=24%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             CCCCCEEEccCCcCCCC-CchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCc
Q 002167          186 LHQLRHLDLQSNNFVGK-IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA  264 (957)
Q Consensus       186 l~~L~~L~L~~n~l~~~-~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~  264 (957)
                      ++.++.+||.+|.++.- -...+.++++.|+.|+++.|.+...+-..-..+.+|++|-|.+..+.-.-..++...++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34444444444444320 01122235555555555555554322111123445555555555443222223333355555


Q ss_pred             EEECcCC
Q 002167          265 YLDLSSN  271 (957)
Q Consensus       265 ~L~Ls~n  271 (957)
                      .|+++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=2e-06  Score=101.79  Aligned_cols=150  Identities=20%  Similarity=0.332  Sum_probs=90.3

Q ss_pred             CCCcEEECCCCc-cCccCchhhhhcCCCCCEEEccCCcCCC-CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167          138 PSLTLLDLCSCN-FTGSIPPSLGNNITQLAYLDLSINSFIG-HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA  215 (957)
Q Consensus       138 ~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~  215 (957)
                      .+|++||+++.. +....|..++..+|.|+.|.+++-.+.. ..-....++++|+.||+++.+++ .+ .+++ ++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence            467777777753 2334566666667777777777655432 23334456777777777777776 22 5555 777777


Q ss_pred             EEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccch------hHhhhccCCcEEECcCCcCCccCcccc-cCcCCC
Q 002167          216 YLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPA------SLGNNITQLAYLDLSSNGFSGHIPSSF-SNLQQL  287 (957)
Q Consensus       216 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~------~l~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L  287 (957)
                      .|.+.+=.+.. ..-..+.+|++|++||+|..... ..+.      +-+..+|+|+.||.|++.+...+-+.+ ...++|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            77777666542 11224566778888888776543 2221      112237888888888887776443332 234455


Q ss_pred             cEEE
Q 002167          288 LWLN  291 (957)
Q Consensus       288 ~~L~  291 (957)
                      +.+.
T Consensus       278 ~~i~  281 (699)
T KOG3665|consen  278 QQIA  281 (699)
T ss_pred             hhhh
Confidence            5443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=6.3e-07  Score=79.77  Aligned_cols=114  Identities=26%  Similarity=0.316  Sum_probs=65.7

Q ss_pred             CCcEEECCCCccCccCchhhhh--cCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGN--NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      .+..++|++|.+- .+++....  ...+|...+|++|.+....+..-.+.+.++.|++.+|.++ .+|..+. .++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhh
Confidence            3445566666553 44443322  1345555666666665333333334456666666666666 6666655 6677777


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHh
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG  257 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~  257 (957)
                      |+++.|.+. ..|..+..+.+|-.|+..+|.+. +||..++
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence            777777665 45555656666666666666665 5655543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.90  E-value=3.9e-06  Score=83.42  Aligned_cols=160  Identities=22%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CCCCCEEEccCCcCCCCcch----hccCCCCCCEEEccCCcCCC----CCchhhh--------hCCCCCcEEEccCCCCC
Q 002167          162 ITQLAYLDLSINSFIGHIPS----SFSNLHQLRHLDLQSNNFVG----KIPASLG--------NNITQLAYLDLSSNSFS  225 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~----~~p~~l~--------~~l~~L~~L~Ls~n~l~  225 (957)
                      |++|+..+||+|.+....|.    .+++-+.|++|.+++|.+--    .+-..++        .+-|.|+.....+|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            56666666666665544332    23455666666666665421    1111111        13455666666666654


Q ss_pred             CCCC----cccCCCCcccEEeccCCCCcccc-----chhHhhhccCCcEEECcCCcCCccC----cccccCcCCCcEEEe
Q 002167          226 GHIP----SSFSNLQQLCYLDLDDNHFVGEI-----PASLGNNITQLAYLDLSSNGFSGHI----PSSFSNLQQLLWLNL  292 (957)
Q Consensus       226 ~~~p----~~l~~l~~L~~L~Ls~n~l~~~i-----p~~l~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L  292 (957)
                      .-..    ..+..-.+|+++.+..|.+.-+-     -..++. +.+|+.||+..|.++-..    ...+...+.|++|.+
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            2111    11122245666666666554110     011222 556666666666655321    222334445666666


Q ss_pred             ccCcCcccCCccc----c--ccCcCceeeccCCcCC
Q 002167          293 EYNNFVGKIPDMF----T--NLTQLSFLGLAYNELI  322 (957)
Q Consensus       293 ~~n~l~~~~p~~l----~--~l~~L~~L~L~~n~l~  322 (957)
                      ..|-++......+    .  ..++|..|...+|...
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6665543222111    1  2345555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=1.1e-05  Score=80.44  Aligned_cols=89  Identities=25%  Similarity=0.386  Sum_probs=49.6

Q ss_pred             CCCCCcEEECCCCccCccCchhhhhc---CCCCCEEEccCCcCCCC----c-------chhccCCCCCCEEEccCCcCCC
Q 002167          136 QFPSLTLLDLCSCNFTGSIPPSLGNN---ITQLAYLDLSINSFIGH----I-------PSSFSNLHQLRHLDLQSNNFVG  201 (957)
Q Consensus       136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~---l~~L~~L~Ls~n~l~~~----~-------p~~l~~l~~L~~L~L~~n~l~~  201 (957)
                      .+..++.++||+|.|..+-...+++.   -.+|+..++++- ++|.    +       -..+.+|++|+..+|+.|.+..
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            35556666666666653333333221   345555555543 1211    1       2345677888888888887766


Q ss_pred             CCchhhh---hCCCCCcEEEccCCCCC
Q 002167          202 KIPASLG---NNITQLAYLDLSSNSFS  225 (957)
Q Consensus       202 ~~p~~l~---~~l~~L~~L~Ls~n~l~  225 (957)
                      ..|..+.   .+-+.|.+|.+++|.+.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC
Confidence            6554332   25566777777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.86  E-value=1.6e-06  Score=77.18  Aligned_cols=107  Identities=25%  Similarity=0.389  Sum_probs=69.0

Q ss_pred             CCCCEEEccCCcCCCCcch---hccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCccc
Q 002167          163 TQLAYLDLSINSFIGHIPS---SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC  239 (957)
Q Consensus       163 ~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  239 (957)
                      ..+..+||++|++- .+++   .+.+...|...+|++|.+. .+|..+....+.++.|++++|.++ .+|..++.++.|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34566777777654 2333   3444556666677777776 666666655567777777777776 4566677777777


Q ss_pred             EEeccCCCCccccchhHhhhccCCcEEECcCCcCC
Q 002167          240 YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       240 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~  274 (957)
                      .|+++.|.+. ..|.-+.. +.++-.|+..+|.+.
T Consensus       104 ~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             hcccccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence            7777777766 56666665 666666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=2.7e-05  Score=56.42  Aligned_cols=36  Identities=42%  Similarity=0.756  Sum_probs=17.1

Q ss_pred             CCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167          783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA  819 (957)
Q Consensus       783 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~  819 (957)
                      +|++|++++|+++. +|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34555555555552 3444555555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=0.00012  Score=79.97  Aligned_cols=53  Identities=23%  Similarity=0.208  Sum_probs=26.0

Q ss_pred             CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167          592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN  650 (957)
Q Consensus       592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  650 (957)
                      ..++.|++++|.++ .+|.   -.++|+.|.+++|.-...+|..+.  ++|+.|++++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            45666666666555 3331   123466666655443334444332  34555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=2.2e-05  Score=93.16  Aligned_cols=135  Identities=23%  Similarity=0.249  Sum_probs=96.4

Q ss_pred             CCCCEEEccCCcC-CCCcchhcc-CCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccE
Q 002167          163 TQLAYLDLSINSF-IGHIPSSFS-NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY  240 (957)
Q Consensus       163 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  240 (957)
                      .+|++||+++... ....|..++ .+|+|++|.+.+-.+...--..++.++++|+.||+|+++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5799999988754 223333443 5799999999887665433345566889999999999998855  67889999999


Q ss_pred             EeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccC--c----ccccCcCCCcEEEeccCcCccc
Q 002167          241 LDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHI--P----SSFSNLQQLLWLNLEYNNFVGK  300 (957)
Q Consensus       241 L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~  300 (957)
                      |.+.+-.+.. ..-..++. +++|+.||+|........  .    +.-..+++|+.||.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            9988877653 22346676 999999999876554221  1    1223578999999998877654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00023  Score=77.78  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=16.0

Q ss_pred             CCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167          471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN  508 (957)
Q Consensus       471 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  508 (957)
                      .+|++|++|.+++|.-...+|..+.  ++|+.|++++|
T Consensus        69 ~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         69 VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            3344555555554432233333221  34555555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=4e-05  Score=55.53  Aligned_cols=37  Identities=46%  Similarity=0.734  Sum_probs=32.2

Q ss_pred             cCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167          806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE  843 (957)
Q Consensus       806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  843 (957)
                      ++|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47999999999999 57778999999999999999988

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00023  Score=68.39  Aligned_cols=59  Identities=29%  Similarity=0.319  Sum_probs=26.5

Q ss_pred             cCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167          261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL  321 (957)
Q Consensus       261 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  321 (957)
                      .+...+||++|.+...  ..|..++.|.+|.+++|+|+.+-|..-..+++|+.|.|.+|++
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            3445555555554321  2344444555555555555544333333334444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00024  Score=68.26  Aligned_cols=103  Identities=22%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             CcEEECcCCcCCccCccccc-CcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecC
Q 002167          263 LAYLDLSSNGFSGHIPSSFS-NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS  341 (957)
Q Consensus       263 L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  341 (957)
                      =+.+++.+.++... . .++ -+.....+||++|.+...  ..|..++.|.+|.+.+|.++..-|.--.-+++|+.|.+.
T Consensus        21 e~e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccch-h-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            34556666555421 1 122 234567788888877532  456777888888888888875544444455667777777


Q ss_pred             CCCCcccccchhhhcCCCCcEEEccccc
Q 002167          342 FSNFSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       342 ~n~l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      +|.+....+...+..|++|++|.+-+|.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCc
Confidence            7777655555555566666666665555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.95  E-value=0.00018  Score=84.23  Aligned_cols=64  Identities=25%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             CCCCCcEEEccCCC-CCCCCCcccCC-CCcccEEeccCCC-CccccchhHhhhccCCcEEECcCCcC
Q 002167          210 NITQLAYLDLSSNS-FSGHIPSSFSN-LQQLCYLDLDDNH-FVGEIPASLGNNITQLAYLDLSSNGF  273 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l  273 (957)
                      .+++|+.|+++.+. +++..-..++. +++|++|.+.++. ++..--..+...++.|++|+++++..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            44555555555554 33322222222 4455555544444 33333333444455555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.90  E-value=0.0013  Score=61.32  Aligned_cols=59  Identities=17%  Similarity=0.186  Sum_probs=20.5

Q ss_pred             hcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167          134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ  195 (957)
Q Consensus       134 ~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  195 (957)
                      |..+++|+.+.+.. .+. .++...+.++++|+.+++..+ +...-...|.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            34455555555543 233 344333333444555555443 332223334444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.79  E-value=0.0023  Score=59.56  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=42.2

Q ss_pred             chhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCC
Q 002167          155 PPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSN  234 (957)
Q Consensus       155 p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~  234 (957)
                      ++..+.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +. .++...+.++++|+.+.+.. .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            333333455666666653 344334445566666666666553 33 44444444555566666644 332222334455


Q ss_pred             CCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167          235 LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS  269 (957)
Q Consensus       235 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  269 (957)
                      +++|+.+++..+ +. .++...+.++ +|+.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            555555555443 32 3333333333 44444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.74  E-value=0.00026  Score=82.91  Aligned_cols=175  Identities=24%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             cCCCCCcEEECCCCccCccCc-hhhhhcCCCCCEEEccCC-cCCCCc----chhccCCCCCCEEEccCCc-CCCCCchhh
Q 002167          135 DQFPSLTLLDLCSCNFTGSIP-PSLGNNITQLAYLDLSIN-SFIGHI----PSSFSNLHQLRHLDLQSNN-FVGKIPASL  207 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip-~~l~~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~l  207 (957)
                      ..++.|+.|.+.++.-..... ..+...+++|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            457788888888774332311 223334788888888763 211111    1234556788888888887 555555556


Q ss_pred             hhCCCCCcEEEccCCC-CCCCCCcc-cCCCCcccEEeccCCCCccc--cchhHhhhccCCcEEECcCCcCCccCcccccC
Q 002167          208 GNNITQLAYLDLSSNS-FSGHIPSS-FSNLQQLCYLDLDDNHFVGE--IPASLGNNITQLAYLDLSSNGFSGHIPSSFSN  283 (957)
Q Consensus       208 ~~~l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~--ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~  283 (957)
                      ...+++|++|.+.++. +++..-.. ..+++.|++|+++++.....  +... ..++++|+.|.+....-          
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------  333 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------  333 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------
Confidence            5567888888877776 45332222 34577788888888765311  2222 33477776655433221          


Q ss_pred             cCCCcEEEeccCcCc---ccCCccccccCcCceeeccCCc
Q 002167          284 LQQLLWLNLEYNNFV---GKIPDMFTNLTQLSFLGLAYNE  320 (957)
Q Consensus       284 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~  320 (957)
                      +..++.+.+......   .........+++++.+.+..+.
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            333444443332221   1122234556666666666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.29  E-value=0.0039  Score=62.92  Aligned_cols=60  Identities=27%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             CcccEEECCCCcCCCCCccccccCCCccEEEccCC--cCccCCCccccCCCCCcEEeCCCCccc
Q 002167          592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN--RLKGPLPPSLVNCQYLEVLDVGNNQID  653 (957)
Q Consensus       592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~ls~n~l~  653 (957)
                      ..|+.|.+.+..++..  ..|-.+++|+.|.++.|  ++.+.++.....+++|++|++++|++.
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3455555555544422  12334455555555555  444444433444455555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.00027  Score=70.93  Aligned_cols=86  Identities=23%  Similarity=0.329  Sum_probs=54.2

Q ss_pred             CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      +.+.+.|++.+|.+. .|  +++..++.|++|.||-|.++..-|  +..|++|++|+|..|.|...-.-...+++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            456677777777776 33  345557888888888887775544  6777888888888777653222222235666666


Q ss_pred             EEccCCCCCCC
Q 002167          217 LDLSSNSFSGH  227 (957)
Q Consensus       217 L~Ls~n~l~~~  227 (957)
                      |-|..|.-.+.
T Consensus        93 LWL~ENPCc~~  103 (388)
T KOG2123|consen   93 LWLDENPCCGE  103 (388)
T ss_pred             HhhccCCcccc
Confidence            66665555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.12  E-value=0.0044  Score=62.55  Aligned_cols=56  Identities=32%  Similarity=0.422  Sum_probs=23.5

Q ss_pred             CCCcEEEcccccccccccccCCCccccccccccccccCCCcCh----hhhcCCCCCEEEC
Q 002167          358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD----NLRTQHQLELLDL  413 (957)
Q Consensus       358 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~----~l~~~~~L~~L~L  413 (957)
                      ++|+++++++|++...........+++|..|++.+|..+.+-+    .+.-+++|++||-
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            3333444444433333333333444445555555554433321    1333455555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.00056  Score=68.78  Aligned_cols=85  Identities=24%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             CCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccch-hHhhhccCCc
Q 002167          186 LHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA-SLGNNITQLA  264 (957)
Q Consensus       186 l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~l~~~l~~L~  264 (957)
                      +.+.+.|++-+|.+.   ..++...|+.|++|.|+-|.|+..-|  +..|++|++|+|..|.|. .+.+ ....++++|+
T Consensus        18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            445566677677665   23455578888888888888775433  667788888888888775 3332 1223366666


Q ss_pred             EEECcCCcCCcc
Q 002167          265 YLDLSSNGFSGH  276 (957)
Q Consensus       265 ~L~Ls~n~l~~~  276 (957)
                      .|.|..|.-.+.
T Consensus        92 ~LWL~ENPCc~~  103 (388)
T KOG2123|consen   92 TLWLDENPCCGE  103 (388)
T ss_pred             hHhhccCCcccc
Confidence            666666655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.50  E-value=0.0058  Score=36.75  Aligned_cols=19  Identities=53%  Similarity=0.814  Sum_probs=9.1

Q ss_pred             CCEEECCCCcccccCcccCc
Q 002167          808 LESLDLSSNKLAGRIPTQLA  827 (957)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~  827 (957)
                      |++|||++|+++ .||..++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.17  E-value=0.0065  Score=36.54  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=8.7

Q ss_pred             ceEEEcccCccCccCccccc
Q 002167          760 FATIDLSSNRFQRKIPEVVG  779 (957)
Q Consensus       760 L~~L~Ls~N~l~~~ip~~l~  779 (957)
                      |+.|||++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344455555444 3444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.15  E-value=0.0016  Score=74.09  Aligned_cols=86  Identities=24%  Similarity=0.295  Sum_probs=41.3

Q ss_pred             CCeeeCCCCCCCCCCCC--chhhcCCCCCcEEECCCCccCccCchhhhhcC----CCCCEEEccCCcCCCC----cchhc
Q 002167          114 LRKLNLAFNDFNGSKIS--SGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNI----TQLAYLDLSINSFIGH----IPSSF  183 (957)
Q Consensus       114 L~~L~Ls~n~~~~~~i~--~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l----~~L~~L~Ls~n~l~~~----~p~~l  183 (957)
                      +.+|.|.+|.+......  ...+...+.|..|++++|.+.+.--..+...+    ..|++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56666666666443111  01124555666666666666533322232222    2344555555554432    33344


Q ss_pred             cCCCCCCEEEccCCcC
Q 002167          184 SNLHQLRHLDLQSNNF  199 (957)
Q Consensus       184 ~~l~~L~~L~L~~n~l  199 (957)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            4455555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.02  E-value=0.0064  Score=69.33  Aligned_cols=84  Identities=26%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             CcEEECCCCccCccCchhhhh---cCCCCCEEEccCCcCCCCcc----hhccCC-CCCCEEEccCCcCCCC----Cchhh
Q 002167          140 LTLLDLCSCNFTGSIPPSLGN---NITQLAYLDLSINSFIGHIP----SSFSNL-HQLRHLDLQSNNFVGK----IPASL  207 (957)
Q Consensus       140 L~~L~Ls~n~l~~~ip~~l~~---~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~----~p~~l  207 (957)
                      +..|.|.+|.+.......++.   ...+|..|++++|.+.+.--    ..+... ..|++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            777888888777544433332   25567777777777653211    111221 3455556655555432    22333


Q ss_pred             hhCCCCCcEEEccCCCC
Q 002167          208 GNNITQLAYLDLSSNSF  224 (957)
Q Consensus       208 ~~~l~~L~~L~Ls~n~l  224 (957)
                      . ....++.++++.|.+
T Consensus       169 ~-~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGL  184 (478)
T ss_pred             h-cccchhHHHHHhccc
Confidence            3 245555555555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.81  E-value=0.22  Score=27.69  Aligned_cols=13  Identities=38%  Similarity=0.516  Sum_probs=4.6

Q ss_pred             CCcEEECCCCccC
Q 002167          139 SLTLLDLCSCNFT  151 (957)
Q Consensus       139 ~L~~L~Ls~n~l~  151 (957)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.40  E-value=0.047  Score=53.95  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=71.8

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      ....+.||++.|++.. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3567889999998863 3456777888999999999988 67888999999999999888887 6889999999999999


Q ss_pred             CccCccc
Q 002167          837 LSNNQLE  843 (957)
Q Consensus       837 ls~N~l~  843 (957)
                      +-.|+|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999865

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.09  E-value=0.72  Score=28.87  Aligned_cols=21  Identities=38%  Similarity=0.632  Sum_probs=11.7

Q ss_pred             CCCcEEECCCCccCccCchhhh
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLG  159 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~  159 (957)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.09  E-value=0.72  Score=28.87  Aligned_cols=21  Identities=38%  Similarity=0.632  Sum_probs=11.7

Q ss_pred             CCCcEEECCCCccCccCchhhh
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLG  159 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~  159 (957)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.45  E-value=0.03  Score=55.29  Aligned_cols=88  Identities=16%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      .+..++..++||++.|.+..  +-..+ +.++.|..||++.|.+. .+|.++.+ +..++.+++..|..+ ..|.++...
T Consensus        37 ei~~~kr~tvld~~s~r~vn--~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~  110 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN--LGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKE  110 (326)
T ss_pred             hhhccceeeeehhhhhHHHh--hccch-HHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCcccccc
Confidence            44555666666666665432  12223 45566666777777666 66666666 666666666666554 456666666


Q ss_pred             CCCCEEEccCCcCC
Q 002167          187 HQLRHLDLQSNNFV  200 (957)
Q Consensus       187 ~~L~~L~L~~n~l~  200 (957)
                      ++++++++.++.+.
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            66666666666543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.16  E-value=0.28  Score=30.06  Aligned_cols=13  Identities=38%  Similarity=0.764  Sum_probs=4.7

Q ss_pred             CCcEEECCCCcCC
Q 002167          783 SLKSLNISHNNLT  795 (957)
Q Consensus       783 ~L~~L~Ls~N~l~  795 (957)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.12  E-value=0.9  Score=28.40  Aligned_cols=14  Identities=50%  Similarity=0.757  Sum_probs=6.5

Q ss_pred             cCCCEEECCCCccc
Q 002167          806 TELESLDLSSNKLA  819 (957)
Q Consensus       806 ~~L~~L~Ls~N~l~  819 (957)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.12  E-value=0.9  Score=28.40  Aligned_cols=14  Identities=50%  Similarity=0.757  Sum_probs=6.5

Q ss_pred             cCCCEEECCCCccc
Q 002167          806 TELESLDLSSNKLA  819 (957)
Q Consensus       806 ~~L~~L~Ls~N~l~  819 (957)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.05  E-value=0.16  Score=49.39  Aligned_cols=81  Identities=19%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcccccc-Cccc--cCCcccEEECCCCc-CCCCCccccccCCCccE
Q 002167          545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQI-PECL--GNSTLQVLDMRMNN-FSGSLPQTFAKSCVLVS  620 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~--~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~  620 (957)
                      ..++.++-++..|..+--+.+.++++++.|.+.+|.--+.- -+.+  ..++|+.|+|++|. |+..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45667777777766655566667777777777776432110 0001  12667777777663 55444445555666666


Q ss_pred             EEccC
Q 002167          621 LNLNG  625 (957)
Q Consensus       621 L~Ls~  625 (957)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	957
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-37
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-10
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-10
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		1e-09
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-09
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		5e-08
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		6e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-04
3cvr_A	571	Crystal Structure Of The Full Length Ipah3 Length =		3e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		5e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		5e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		6e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		6e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 231/835 (27%), Positives = 346/835 (41%), Gaps = 193/835 (23%)
Query: 43  FSFQKHSSLSCEIFQQISRPKMM-------SWKEDADCCSWDGVTCDSATGHVIGLDLSC 95
           F      SL  EI Q IS   ++        W  + + C++DGVTC      V  +DLS 
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSS 59
Query: 96  SWLH-GNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSI 154
             L+ G    +SSL  L  L  L L+ +  NGS   SGF            CS + T   
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFK-----------CSASLTS-- 104
Query: 155 PPSLGNNITQLAYLDLSINSFIGHIPS--SFSNLHQLRHLDLQSN--NFVGKIPASLGNN 210
                        LDLS NS  G + +  S  +   L+ L++ SN  +F GK+   L   
Sbjct: 105 -------------LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--K 149
Query: 211 ITQLAYLDLSSNSFSG----------------HIPSS---------FSNLQQLCYLDLDD 245
           +  L  LDLS+NS SG                H+  S          S    L +LD+  
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209
Query: 246 NHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMF 305
           N+F   IP  LG + + L +LD+S N  SG    + S   +L  LN+  N FVG IP + 
Sbjct: 210 NNFSTGIPF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266
Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAXXXXXXXXX 364
             L  L +L LA N+  G IP  +    + LT + LS ++F G+V  +            
Sbjct: 267 -PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF------------ 313
Query: 365 XXXXXXXXXTKLTANSSFPNLSALDLSACNISEFP-DNLRTQHQLELLDLSENQIGGRIP 423
                       +   S  N S          E P D L     L++LDLS N+  G +P
Sbjct: 314 ----FGSCSLLESLALSSNNFSG---------ELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 424 SWMWDIGVHTLIELDLSRN-----FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478
             + ++   +L+ LDLS N      L ++   P   L+ L+L                  
Sbjct: 361 ESLTNLSA-SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ----------------- 402
Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSI 537
               NN  TG+IP +  N S +  L LS N LSG IP  LG+ S L  L L +N  +G I
Sbjct: 403 ----NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 538 PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQV 596
           PQ       L  L L  N L G +P  L+NC  L ++ + NN L+G+IP+ +G    L +
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL------------VNCQYLEV 644
           L +  N+FSG++P        L+ L+LN N   G +P ++               +Y+ +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 645 LDVGNNQ----IDDTFPYWXXXXXXXXXXXXR-----SNRFWG----PIGDTKTRVPFPK 691
            + G  +      +   +             R     ++R +G    P  D    + F  
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF-- 636
Query: 692 LRIMDCSHNQLTGVLP-----LWYLESFKAMMHGNNNSV--EVGYMRLPGSSNYYESIFL 744
              +D S+N L+G +P     + YL       +  + S+  EVG +R             
Sbjct: 637 ---LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR------------- 680
Query: 745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP 799
              G+++           +DLSSN+   +IP+ +  L  L  +++S+NNL+G IP
Sbjct: 681 ---GLNI-----------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 188/691 (27%), Positives = 278/691 (40%), Gaps = 121/691 (17%)
Query: 261 TQLAYLDLSSNGFSGHIPS--SFSNLQQLLWLNLEYN--NFVGKIPDMFTNLTQLSFLGL 316
             L  LDLS N  SG + +  S  +   L +LN+  N  +F GK+      L  L  L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 317 AYNELIGS------IPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXX 370
           + N + G+      +     EL +L    +S +  SG V++                   
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDV------------------- 196
Query: 371 XXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
                    S   NL  LD+S+ N S     L     L+ LD+S N++ G      +   
Sbjct: 197 ---------SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-----FSRA 242
Query: 431 VHTLIELDL----SRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD--------------- 471
           + T  EL L    S  F+  I  LP K+L+YL L  N   G +PD               
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 472 -------LPPHM------VSFSISNNSLTGEIP-SSFCNLSSIQYLDLSNNSLSGQIPQC 517
                  +PP         S ++S+N+ +GE+P  +   +  ++ LDLS N  SG++P+ 
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 518 LGN--STLETLDLRMNNFQGSIPQTNAKGCK--LTYLRLSGNHLEGPLPPSLTNCVKLQF 573
           L N  ++L TLDL  NNF G I     +  K  L  L L  N   G +PP+L+NC +L  
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 574 LDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
           L +  N LSG IP  LG+ S L+ L + +N   G +PQ       L +L L+ N L G +
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPI----GDTKTRVP 688
           P  L NC  L  + + NN++    P W             +N F G I    GD ++ + 
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI- 541
Query: 689 FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI--FLTM 746
                 +D + N   G +P    +    +           Y++  G           L  
Sbjct: 542 -----WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL------------ 794
           +GI  +    L+T    +++S  +            S+  L++S+N L            
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 795 ------------TGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXX 842
                       +G IP  + +L  L  LDLSSNKL GRIP                   
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 843 EGPIPGGPQFNTFGNDSYSGNSGLCGFPLSK 873
            GPIP   QF TF    +  N GLCG+PL +
Sbjct: 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 230/828 (27%), Positives = 345/828 (41%), Gaps = 193/828 (23%)
Query: 50  SLSCEIFQQISRPKMM-------SWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLH-GN 101
           SL  EI Q IS   ++        W  + + C++DGVTC      V  +DLS   L+ G 
Sbjct: 6   SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGF 63
Query: 102 IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNN 161
              +SSL  L  L  L L+ +  NGS   SGF            CS + T          
Sbjct: 64  SAVSSSLLSLTGLESLFLSNSHINGS--VSGFK-----------CSASLTS--------- 101
Query: 162 ITQLAYLDLSINSFIGHIPS--SFSNLHQLRHLDLQSN--NFVGKIPASLGNNITQLAYL 217
                 LDLS NS  G + +  S  +   L+ L++ SN  +F GK+   L   +  L  L
Sbjct: 102 ------LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVL 153
Query: 218 DLSSNSFSG----------------HIPSS---------FSNLQQLCYLDLDDNHFVGEI 252
           DLS+NS SG                H+  S          S    L +LD+  N+F   I
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 253 PASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS 312
           P  LG + + L +LD+S N  SG    + S   +L  LN+  N FVG IP +   L  L 
Sbjct: 214 PF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 313 FLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXX 371
           +L LA N+  G IP  +    + LT + LS ++F G+V  +                   
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF----------------FGS 313
Query: 372 XXTKLTANSSFPNLSALDLSACNISEFP-DNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
                +   S  N S          E P D L     L++LDLS N+  G +P  + ++ 
Sbjct: 314 CSLLESLALSSNNFSG---------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 431 VHTLIELDLSRN-----FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNS 485
             +L+ LDLS N      L ++   P   L+ L+L                      NN 
Sbjct: 365 A-SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ---------------------NNG 402
Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKG 544
            TG+IP +  N S +  L LS N LSG IP  LG+ S L  L L +N  +G IPQ     
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNN 603
             L  L L  N L G +P  L+NC  L ++ + NN L+G+IP+ +G    L +L +  N+
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL------------VNCQYLEVLDVGNNQ 651
           FSG++P        L+ L+LN N   G +P ++               +Y+ + + G  +
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 652 ----IDDTFPYWXXXXXXXXXXXXR-----SNRFWG----PIGDTKTRVPFPKLRIMDCS 698
                 +   +             R     ++R +G    P  D    + F     +D S
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF-----LDMS 637
Query: 699 HNQLTGVLP-----LWYLESFKAMMHGNNNSV--EVGYMRLPGSSNYYESIFLTMKGIDL 751
           +N L+G +P     + YL       +  + S+  EVG +R                G+++
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR----------------GLNI 681
Query: 752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP 799
                      +DLSSN+   +IP+ +  L  L  +++S+NNL+G IP
Sbjct: 682 -----------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 188/691 (27%), Positives = 279/691 (40%), Gaps = 121/691 (17%)
Query: 261 TQLAYLDLSSNGFSGHIPS--SFSNLQQLLWLNLEYN--NFVGKIPDMFTNLTQLSFLGL 316
             L  LDLS N  SG + +  S  +   L +LN+  N  +F GK+      L  L  L L
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 317 AYNELIGS------IPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXX 370
           + N + G+      +     EL +L    +S +  SG V++                   
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDV------------------- 193
Query: 371 XXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
                    S   NL  LD+S+ N S     L     L+ LD+S N++ G      +   
Sbjct: 194 ---------SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-----FSRA 239
Query: 431 VHTLIELDL----SRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD--------------- 471
           + T  EL L    S  F+  I  LP K+L+YL L  N   G +PD               
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 472 -------LPPHM------VSFSISNNSLTGEIP-SSFCNLSSIQYLDLSNNSLSGQIPQC 517
                  +PP         S ++S+N+ +GE+P  +   +  ++ LDLS N  SG++P+ 
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 518 LGN--STLETLDLRMNNFQGSIPQTNAKGCK--LTYLRLSGNHLEGPLPPSLTNCVKLQF 573
           L N  ++L TLDL  NNF G I     +  K  L  L L  N   G +PP+L+NC +L  
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 574 LDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
           L +  N LSG IP  LG+ S L+ L + +N   G +PQ       L +L L+ N L G +
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPI----GDTKTRVP 688
           P  L NC  L  + + NN++    P W             +N F G I    GD ++ + 
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI- 538
Query: 689 FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN--YYESIFLTM 746
                 +D + N   G +P    +    +           Y++  G     +     L  
Sbjct: 539 -----WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL------------ 794
           +GI  +    L+T    +++S  +            S+  L++S+N L            
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 795 ------------TGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXX 842
                       +G IP  + +L  L  LDLSSNKL GRIP                   
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 843 EGPIPGGPQFNTFGNDSYSGNSGLCGFPLSK 873
            GPIP   QF TF    +  N GLCG+PL +
Sbjct: 714 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 130/304 (42%), Gaps = 48/304 (15%)
Query: 27  LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMS-WKEDADCC--SWDGVTCDS 83
           LC+     ALLQ K+                 +  P  +S W    DCC  +W GV CD+
Sbjct: 2   LCNPQDKQALLQIKK----------------DLGNPTTLSSWLPTTDCCNRTWLGVLCDT 45
Query: 84  ATG--HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLA-FNDFNGSKISSGFTDQFPSL 140
            T    V  LDLS   L    P  SSL  LP L  L +   N+  G    +    +   L
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQL 103
Query: 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFV 200
             L +   N +G+IP  L + I  L  LD S N+  G +P S S+L  L  +    N   
Sbjct: 104 HYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 201 GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI 260
           G IP S G+       + +S N  +G IP +F+NL  L ++DL  N   G+     G++ 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 261 -TQ--------LAY-------------LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
            TQ        LA+             LDL +N   G +P   + L+ L  LN+ +NN  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 299 GKIP 302
           G+IP
Sbjct: 282 GEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 139/317 (43%), Gaps = 39/317 (12%)
Query: 513 QIPQCLGNST-----LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP--LPPSL 565
           QI + LGN T     L T D     + G +  T+ +  ++  L LSG +L  P  +P SL
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 566 TNCVKLQFLDVGN-NNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNL 623
            N   L FL +G  NNL G IP  +   T L  L +   N SG++P   ++   LV+L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 624 NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDT 683
           + N L G LPPS+ +           N +  TF                 NR  G I D+
Sbjct: 133 SYNALSGTLPPSISSLP---------NLVGITF---------------DGNRISGAIPDS 168
Query: 684 KTRVPFPKLRI-MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                F KL   M  S N+LTG +P  +     A +  + N +E     L GS    + I
Sbjct: 169 YGS--FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 743 FLTMKGI--DLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
            L    +  DL    +      +DL +NR    +P+ + +L  L SLN+S NNL G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 801 SLRNLTELESLDLSSNK 817
              NL   +    ++NK
Sbjct: 287 G-GNLQRFDVSAYANNK 302

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
           N     IP  + KL  L  L I+H N++G IP  L  +  L +LD S N L+G +P
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 104/237 (43%), Gaps = 13/237 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
            P L+  +L    F  +K  + F++   PSL  LDL     +F G    S    I+ L Y
Sbjct: 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKY 401
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           LDLS N  I  + S+F  L QL HLD Q +N       S+  ++  L YLD+S       
Sbjct: 402 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
               F+ L  L  L +  N F       +   +  L +LDLS        P++F++L  L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
             LN+ +NNF       +  L  L  L  + N ++ S        PSS+   LNLT+
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 576

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
           LE LDLS N +  +      D G  +L  LDLS N + ++  + L  + LE+L    ++L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
           +         M  FS+            F +L ++ YLD+S+            G S+LE
Sbjct: 433 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
            L +  N+FQ + +P    +   LT+L LS   LE   P +  +   LQ L++ +NN   
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 584 --QIP-ECLGNSTLQVLDMRMNNFSGSLPQ 610
               P +CL  ++LQVLD  +N+   S  Q
Sbjct: 533 LDTFPYKCL--NSLQVLDYSLNHIMTSKKQ 560

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 103/237 (43%), Gaps = 13/237 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
            P L+  +L    F  +K  + F++   PSL  LDL     +F G    S     T L Y
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKY 377
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           LDLS N  I  + S+F  L QL HLD Q +N       S+  ++  L YLD+S       
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
               F+ L  L  L +  N F       +   +  L +LDLS        P++F++L  L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
             LN+ +NNF       +  L  L  L  + N ++ S        PSS+   LNLT+
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 552

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
           LE LDLS N +  +      D G  +L  LDLS N + ++  + L  + LE+L    ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
           +         M  FS+            F +L ++ YLD+S+            G S+LE
Sbjct: 409 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
            L +  N+FQ + +P    +   LT+L LS   LE   P +  +   LQ L++ +NN   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 584 --QIP-ECLGNSTLQVLDMRMNNFSGSLPQ 610
               P +CL  ++LQVLD  +N+   S  Q
Sbjct: 509 LDTFPYKCL--NSLQVLDYSLNHIMTSKKQ 536

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 132 GFTDQFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189
           G  D+   LT L L S   +F G    S     T L YLDLS N  I  + S+F  L QL
Sbjct: 46  GVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 103
Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
            HLD Q +N       S+  ++  L YLD+S           F+ L  L  L +  N F 
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
                 +   +  L +LDLS        P++F++L  L  LN+ +NNF       +  L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 310 QLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
            L  L  + N ++ S        PSS+   LNLT+
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 257

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 96/220 (43%), Gaps = 7/220 (3%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
            P L+  +L    F  +K  + F++   PSL  LDL     +F G    S     T L Y
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKY 377
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           LDLS N  I  + S+F  L QL HLD Q +N       S+  ++  L YLD+S       
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
               F+ L  L  L +  N F       +   +  L +LDLS        P++F++L  L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 288 LWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIP 326
             LN+  N  +  +PD +F  LT L  + L  N    S P
Sbjct: 497 QVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 27/209 (12%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
           LE LDLS N +  +      D G  +L  LDLS N + ++  + L  + LE+L    ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
           +         M  FS+            F +L ++ YLD+S+            G S+LE
Sbjct: 409 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
            L +  N+FQ + +P    +   LT+L LS   LE   P +  +   LQ L++ +N L  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 584 QIPECLGN--STLQVLDMRMNNFSGSLPQ 610
            +P+ + +  ++LQ + +  N +  S P+
Sbjct: 509 -VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLC--SCNFTGSIPPS-LGNNITQLA 166
           LP L+ L L  N     K S  F     PSL+ LDL   + +F+G    S LG N   L 
Sbjct: 327 LPFLKSLTLTMN-----KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLR 379
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
           +LDLS N  I  + ++F  L +L+HLD Q +        S   ++ +L YLD+S  +   
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ 286
                F  L  L  L +  N F     +++  N T L +LDLS           F  L +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
           L  LN+ +NN +      +  L  LS L  ++N +
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLC--SCNFTGSIPPS-LGNNITQLA 166
           LP L+ L L  N     K S  F     PSL+ LDL   + +F+G    S LG N   L 
Sbjct: 322 LPFLKSLTLTMN-----KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLR 374
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
           +LDLS N  I  + ++F  L +L+HLD Q +        S   ++ +L YLD+S  +   
Sbjct: 375 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 433
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ 286
                F  L  L  L +  N F     +++  N T L +LDLS           F  L +
Sbjct: 434 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 493
Query: 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
           L  LN+ +NN +      +  L  LS L  ++N +
Sbjct: 494 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           LDL SN  S     +F  L +L  L L+DN     +PA +   +  L  L ++ N     
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNL 335
               F  L  L  L L+ N      P +F +LT+L++L L YNEL  S+P  +F+ L +L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSL 159
Query: 336 TEIYL 340
            E+ L
Sbjct: 160 KELRL 164

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           LDL S G +    ++F  L +L WLNL+YN        +F +LT+L  LGLA N+L  S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 326 PSSIFE-LLNLTEIYL 340
           P  +F+ L  L ++YL
Sbjct: 99  PLGVFDHLTQLDKLYL 114

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           LDL S G +    ++F  L +L WLNL+YN        +F +LT+L  LGLA N+L  S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 326 PSSIFE-LLNLTEIYL 340
           P  +F+ L  L ++YL
Sbjct: 99  PLGVFDHLTQLDKLYL 114

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
           Q  YLDL +NS        F  L  L  L L  N     +P  + N +T L YL+LS+N 
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE- 331
                   F  L QL  L L  N        +F  LTQL  L L  N+L  S+P  +F+ 
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDR 146
Query: 332 LLNLTEIYL 340
           L +L  I+L
Sbjct: 147 LTSLQYIWL 155

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 10/199 (5%)
Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
           D F      +L   + T ++  +  N+I Q+   +  I S  G        L  +R+L L
Sbjct: 16  DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLAL 70
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
             N        S    +T L YL L+ N         F  L  L  L L +N     +P 
Sbjct: 71  GGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD 126
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
            + + +T L YL+L+ N         F  L  L  L+L YN        +F  LTQL  L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 315 GLAYNELIGSIPSSIFELL 333
            L  N+L  S+P  +F+ L
Sbjct: 187 RLYQNQL-KSVPDGVFDRL 204

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
           N +  +PA+   +   L  L L SN+ +G   ++F+ L  L  LDL DN  +  +  +  
Sbjct: 41  NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
             +  L  L L   G     P  F  L  L +L L+ NN      + F +L  L+ L L 
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
            N  I S+P   F  L+  +  L   N    V  + F
Sbjct: 161 GNR-IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 30/246 (12%)
Query: 78  GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
           G  C     ++  LDLS S +  +   N  L  L  L+ LNL++N+  G  +      + 
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG--LEDQAFKEC 398
Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
           P L LLD+   +     P S   N+  L  L+LS            + L  LRHL+LQ N
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 198 NFV-GKIPAS-LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
           +F  G I  + L   +  L  L LSS +                 L +D   F G     
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNL----------------LSIDQQAFHG----- 497
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
               +  + +LDLS N  +G    + S+L+  L+LN+  NN     P +   L+Q S + 
Sbjct: 498 ----LRNVNHLDLSHNSLTGDSMDALSHLKG-LYLNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 316 LAYNEL 321
           L++N L
Sbjct: 553 LSHNPL 558

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 160/391 (40%), Gaps = 71/391 (18%)
Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY-------- 240
           LR LDL SN      P      I +L  L L++   + H+       ++LC+        
Sbjct: 173 LRKLDLSSNPLKEFSPGCF-QTIGKLFALLLNNAQLNPHLT------EKLCWELSNTSIQ 225
Query: 241 -LDLDDNHFVGEIPASL-GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
            L L +N  +    ++  G   T L  LDLS N        SFS L  L +L+LEYNN  
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 299 GKIPDMFTNLTQLSFLGL--AYNELIGSIPS------------SIFELLNLTE--IYLSF 342
              P  F  L+ L +L L  A+ +   S+ S               E LN+ +  I  + 
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 343 SN-FSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLS-----ALDLSACNIS 396
           SN F+G V L   +                   +   N +F +L+      L+L+  +IS
Sbjct: 346 SNTFTGLVSLKYLSLSKTFTSL-----------QTLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 397 EFPD-NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNL 455
           +  +       QL +LDL  N+I  ++    W  G+  + E+ LS N             
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR-GLRNIFEIYLSYN------------- 440
Query: 456 EYLHLDSNSLQGSLPDLPPHMV-SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQI 514
           +YL L ++S    +P L   M+   ++ N  ++   PS F  L ++  LDLSNN+++   
Sbjct: 441 KYLQLSTSSF-ALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANIN 496
Query: 515 PQCL-GNSTLETLDLRMNNFQGSIPQTNAKG 544
              L G   LE LD + NN      + N  G
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRANPGG 527

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 105/269 (39%), Gaps = 44/269 (16%)
Query: 78  GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
             +C +    VI      + +  +IP N+        R LNL  N     +     TD F
Sbjct: 9   ACSCSNQASRVICTRRELAEVPASIPVNT--------RYLNLQENSIQVIR-----TDTF 55
Query: 138 PSLTLLDLC--SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
             L  L++   S N    I     N +  L  L+L  N        +F  L +LR L L+
Sbjct: 56  KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA 254
            NN +  IP+   N +  L  LDL       +I  ++F  L  L YL+L   + + +IP 
Sbjct: 116 -NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPN 173
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWL---------------------- 290
                + +L  L+LS N      P SF  L  L  LWL                      
Sbjct: 174 LTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
           NL +NN +    D+FT L +L  + L +N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
            L  L+L+ N      P +F+NL  LR L L+SN  +  IP  +   ++ L  LD+S N 
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK 115
Query: 224 FSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSN 283
               +   F +L  L  L++ DN  V  I     + +  L  L L     +     + S+
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 284 LQQLLWLNLEYNNFVGKIPDM-FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSF 342
           L  L+ L L + N +  I D  F  L +L  L +++   + ++  +    LNLT + ++ 
Sbjct: 175 LHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 343 SNFSG 347
            N + 
Sbjct: 234 CNLTA 238

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 150/408 (36%), Gaps = 86/408 (21%)
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
           Y+DLS+NS      +SFS L  L+ L ++                 Q   L + +N+F G
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQ----------------QTPGLVIRNNTFRG 77
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS--FSNL 284
                   L  L  L LD N F+ ++     N +  L  L L+     G + S   F  L
Sbjct: 78  --------LSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 285 QQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELIGSIPSSI-------FELLNLT 336
             L  L L  NN     P   F N+ +   L L +N++       +       F LL L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 337 EIYLSFSN-------------FSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTA----- 378
            I L   N              + S+   D +                  TK+ +     
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 379 -----------------NSSFPNLSALDLSACNISE------FPDNLRTQHQLELLDLSE 415
                            N +F  L A  +  C++S+                LE L L++
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKN---LEYLHLDSNSLQGSLPDL 472
           N+I     +  W  G+  L++L+LS+NFL SID   ++N   LE L L  N ++ +L D 
Sbjct: 309 NEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365
Query: 473 P----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
                P++   ++  N L       F  L+S+Q + L  N      P+
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
           ++ S+NQLT + PL  L     ++  NN   ++    L   +N         +  D+   
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
           + LT    ++LSSN     I  + G L SL+ LN S N +T   P  L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
           SNK++
Sbjct: 182 SNKVS 186

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 104/269 (38%), Gaps = 44/269 (16%)
Query: 78  GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
             +C +    VI      + +  +IP N+        R LNL  N     +     TD F
Sbjct: 9   ACSCSNQASRVICTRRELAEVPASIPVNT--------RYLNLQENSIQVIR-----TDTF 55
Query: 138 PSLTLLDLC--SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
             L  L++   S N    I     N +  L  L+L  N        +F  L +LR L L+
Sbjct: 56  KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA 254
            NN +  IP+   N +  L  LDL       +I  ++F  L  L YL+L   +   +IP 
Sbjct: 116 -NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPN 173
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWL---------------------- 290
                + +L  L+LS N      P SF  L  L  LWL                      
Sbjct: 174 LTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
           NL +NN +    D+FT L +L  + L +N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 13/208 (6%)
Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
           D F      +L   + T ++  +  N+I Q+   +  I S  G        L  +R+L L
Sbjct: 16  DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLAL 70
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
             N        S    +T L YL L+ N         F  L  L  L L +N     +P 
Sbjct: 71  GGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD 126
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSF 313
            + + +T L YL L  N         F  L  L  L+L+ NN +  +P+ +F  LTQL  
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQLKQ 185
Query: 314 LGLAYNELIGSIPSSIFE-LLNLTEIYL 340
           L L  N+L  S+P  +F+ L +LT I+L
Sbjct: 186 LSLNDNQL-KSVPDGVFDRLTSLTHIWL 212

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 94/233 (40%), Gaps = 38/233 (16%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
           R LNL  N     K++S        L +L L S N   +I     N +  L  L+L  N 
Sbjct: 67  RLLNLHENQIQIIKVNS--FKHLRHLEILQL-SRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFS 233
                  +F  L +L+ L L+ NN +  IP+   N I  L  LDL       +I   +F 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 234 NLQQLCYLDLDDNHFVGEIPASLGNNIT---QLAYLDLSSNGFSGHIPSSFS-------- 282
            L  L YL+L   +   EIP     N+T   +L  LDLS N  S   P SF         
Sbjct: 183 GLSNLRYLNLAMCNL-REIP-----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 283 ----------------NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
                           NLQ L+ +NL +NN      D+FT L  L  + L +N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 32/239 (13%)
Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           E+P  +  N T+L  L+L  N       +SF +L+ L  L L  N+        F  L  
Sbjct: 57  EVPDGISTN-TRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 311 LSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXX 369
           L+ L L  N L  +IP+  F  L  L E++L  +N   S+  Y F               
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 370 XXXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPS----- 424
                   A     NL  L+L+ CN+ E P NL    +L+ LDLS N +    P      
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 425 ------WMWDIGV-----------HTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSN 463
                 WM    +            +L+E++L+ N LT + H    P  +LE +HL  N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 23/239 (9%)
Query: 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSF 175
           L++ FN    S   S +   F  +   D+ S    G    S+ + N+ +  + D+S    
Sbjct: 212 LSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS---- 267
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
                ++F    QL+ LDL + +  G      G N+  L  L LS N F      S +N 
Sbjct: 268 ----STTFQCFTQLQELDLTATHLKGLPSGMKGLNL--LKKLVLSVNHFDQLCQISAANF 321
Query: 236 QQLCYLDLDDNHFVGEIPASLG--NNITQLAYLDLSSNGFSGHIPSSF--SNLQQLLWLN 291
             L +L +  N  V ++   +G    +  L  LDLS N        S    NL  L  LN
Sbjct: 322 PSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLN 379
Query: 292 LEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF------ELLNLTEIYLSFSN 344
           L +N  +G     F    QL  L LA+  L  + P S F      ++LNLT  +L  SN
Sbjct: 380 LSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN 438

>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 33/219 (15%)
Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGG--RIPSWMWDIGVHTLIELDLSRNF 443
           S L L+  N+S  PDNL    Q+ +L++++N +     +P+        +L  LD   N 
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPA--------SLEYLDACDNR 111
Query: 444 LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG--EIPSSFCNLSSIQ 501
           L+++  LP  +L++L +D+N L   LP+LP  +   +  NN LT   E+P      +S++
Sbjct: 112 LSTLPELP-ASLKHLDVDNNQL-TXLPELPALLEYINADNNQLTXLPELP------TSLE 163
Query: 502 YLDLSNNSLS--GQIPQCLGNSTLETLDLRMNNFQG--SIPQTNAKGCKLT-YLRLSGNH 556
            L + NN L+   ++P+     +LE LD+  N  +   ++P  N    +   + R   N 
Sbjct: 164 VLSVRNNQLTFLPELPE-----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 557 LEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQ 595
           +   +P ++ +      + + +N LS +I E L   T Q
Sbjct: 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
           +  +PA +    T    L L  N  +   P  F +L QL +LNL  N        +F  L
Sbjct: 31  LASVPAGIP---TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 309 TQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYL 340
           T+L+ L L  N+L  SIP  +F+ L +LT IYL
Sbjct: 88  TKLTHLALHINQL-KSIPMGVFDNLKSLTHIYL 119

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
           IPSS + L      +L+ N     +P  + + +TQL  L LS N         F  L +L
Sbjct: 26  IPSSATRL------ELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFS 346
             L L  N        +F  LTQL  L L  N+L  S+P  IF+ L +L +I+L  + + 
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137
Query: 347 GSVELYDF 354
            S    D+
Sbjct: 138 CSCPRIDY 145

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
           S+  LDL S  F  S+   +   +  L  L+L+ N        +F  L  L+ L+L S N
Sbjct: 267 SVRHLDL-SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL-SYN 324
Query: 199 FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-----HFVGEIP 253
            +G++ +S    + ++AY+DL  N  +     +F  L++L  LDL DN     HF+  IP
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Query: 254 ASL--GNNITQLAYLDLSSN 271
                GN +  L  ++L++N
Sbjct: 385 DIFLSGNKLVTLPKINLTAN 404

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
           ++ S+NQLT + PL  L     ++  NN   ++    L   +N         +  D+   
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
           + LT    ++LSSN     I  + G L SL+ L+ S N +T   P  L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
           SNK++
Sbjct: 182 SNKVS 186

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 16/225 (7%)
Query: 78  GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
           G  C     ++  LDLS   +  +   N  L  L  L+ LNL++N+    K  +    + 
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKEC 399
Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
           P L LLDL           S   N+  L  L+LS +         F  L  L+HL+LQ N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 198 NF-VGKIPA-----SLGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250
           +F  G I       +LG   I  L++ DLS  S   H   +F++L+ + ++DL  N    
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQH---AFTSLKMMNHVDLSHNRLTS 514
Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
               +L +   +  YL+L+SN  S  +PS    L Q   +NL  N
Sbjct: 515 SSIEALSH--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
           ++ S+NQLT + PL  L     ++  NN   ++    L   +N         +  D+   
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
           + LT    ++LSSN     I  + G L SL+ L+ S N +T   P  L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
           SNK++
Sbjct: 182 SNKVS 186

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
           L LD N F   +P  L +N   L  +DLS+N  S     SFSN+ QLL L L YN     
Sbjct: 36  LYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
            P  F  L  L  L L  N+ I  +P   F
Sbjct: 94  PPRTFDGLKSLRLLSLHGND-ISVVPEGAF 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	957
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-109
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-94
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-83
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-80
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-70
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-70
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-60
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-56
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-30
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  639 bits (1651), Expect = 0.0
 Identities = 232/871 (26%), Positives = 352/871 (40%), Gaps = 133/871 (15%)

Query: 24  SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDS 83
           S     + +   L+ FK        + L               W  + + C++DGVTC  
Sbjct: 5   SPSQSLYREIHQLISFKD--VLPDKNLLP-------------DWSSNKNPCTFDGVTCRD 49

Query: 84  ATGHVIGLDLSCSWLHGNIPS-NSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL 142
               V  +DLS   L+    + +SSL  L  L  L L+ +  NGS           SLT 
Sbjct: 50  --DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK---CSASLTS 104

Query: 143 LDLCSCNFTGSIPPSLG-NNITQLAYLDLSINSFIGHIP-SSFSNLHQLRHLDLQSNNFV 200
           LDL   + +G +       + + L +L++S N+       S    L+ L  LDL +N+  
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 201 GKIPASLG--NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
           G         +   +L +L +S N  SG +    S    L +LD+  N+F   IP  LG+
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGD 221

Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
             + L +LD+S N  SG    + S   +L  LN+  N FVG IP     L  L +L LA 
Sbjct: 222 -CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278

Query: 319 NELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT 377
           N+  G IP  +      LT + LS ++F G+V    F     L+ L+LS+ + S      
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS------ 331

Query: 378 ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIEL 437
                P                D L     L++LDLS N+  G +P  + ++        
Sbjct: 332 --GELP---------------MDTLLKMRGLKVLDLSFNEFSGELPESLTNL-------- 366

Query: 438 DLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-----LPPHMVSFSISNNSLTGEIPS 492
                           +L  L L SN+  G +           +    + NN  TG+IP 
Sbjct: 367 --------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551
           +  N S +  L LS N LSG IP  LG+ S L  L L +N  +G IPQ       L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQ 610
           L  N L G +P  L+NC  L ++ + NN L+G+IP+ +G    L +L +  N+FSG++P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 611 TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLI 670
                  L+ L+LN N   G +P ++          +  N I      ++      +   
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 671 LRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730
              N        ++           + +     G     +                    
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-------------------- 628

Query: 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNIS 790
                                       +   +D+S N     IP+ +G +  L  LN+ 
Sbjct: 629 ------------------------DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP 850
           HN+++G IP  + +L  L  LDLSSNKL GRIP  +++L  L+ ++LSNN L GPIP   
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724

Query: 851 QFNTFGNDSYSGNSGLCGFPLSKSCSIDEAP 881
           QF TF    +  N GLCG+PL +    +   
Sbjct: 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  353 bits (907), Expect = e-109
 Identities = 139/685 (20%), Positives = 246/685 (35%), Gaps = 56/685 (8%)

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
                 D S    +       +N+     L+L  N       A+     +QL  LD+  N
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTR-YSQLTSLDVGFN 59

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE 331
             S   P     L  L  LNL++N         F   T L+ L L  N +     +   +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 332 LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS-VSTKLTANSSFPNLSALDL 390
             NL  + LS +  S S +L    +L+NL+ L LSN  +  + ++     +  +L  L+L
Sbjct: 120 QKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 391 SACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWM-WDIGVHTLIELDLSRNFLTSID 448
           S+  I EF         +L  L L+  Q+G  +   +  ++   ++  L LS + L++  
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 449 -----HLPWKNLEYLHLDSNSLQGSLPDLP---PHMVSFSISNNSLTGEIPSSFCNLSSI 500
                 L W NL  L L  N+L     D     P +  F +  N++      S   L ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP 560
           +YL+L  +                   + + +       +      L +L +  N + G 
Sbjct: 299 RYLNLKRS--------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPE-----CLGNSTLQVLDMRMNNFSGSLPQTFAKS 615
                T  + L++L + N+  S +         L +S L +L++  N  S      F+  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 616 CVLVSLNLNGNRLKGPLPPS-LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
             L  L+L  N +   L        + +  + +  N+          ++  LQ L+LR  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPG 734
                        P   L I+D S+N +   +    LE  + +            + L  
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEI----------LDL-- 511

Query: 735 SSNYYESIFL-TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN 793
             N    ++     G  +   + L+    ++L SN F     EV   L  LK +++  NN
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 794 LTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNNQLEGPIPGGPQF 852
           L     S   N   L+SL+L  N +          +   L+ L++  N  +        F
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

Query: 853 NTFGNDSYSGNSGL-----CGFPLS 872
             + N++++    L     C  P  
Sbjct: 632 VNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  318 bits (818), Expect = 8e-97
 Identities = 140/730 (19%), Positives = 233/730 (31%), Gaps = 112/730 (15%)

Query: 113 RLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSI 172
                + +      +++         ++T+L+L           +     +QL  LD+  
Sbjct: 5   SHEVADCSHLKL--TQVPDDL---PTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGF 58

Query: 173 NSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF 232
           N+     P     L  L+ L+LQ N        +     T L  L L SNS      + F
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPF 117

Query: 233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQ--QLLWL 290
              + L  LDL  N        +       L  L LS+N                 L  L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
            L  N      P  F  + +L  L L   +L  S+   +   L  T              
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-------------- 222

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLT-ANSSFPNLSALDLSACNISEFPDN-LRTQHQL 408
                   +++ LSLSN  LS ++  T     + NL+ LDLS  N++   ++      QL
Sbjct: 223 --------SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 409 ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGS 468
           E   L  N I       +   G+  +  L+L R+F      +   +L  +   S      
Sbjct: 275 EYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQ--SISLASLPKIDDFSFQWLKC 330

Query: 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP-----QCLGNSTL 523
           L  L       ++ +N + G   + F  L +++YL LSN+  S +         L +S L
Sbjct: 331 LEHL-------NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPS-LTNCVKLQFLDVGNNNLS 582
             L+L  N          +    L  L L  N +   L          +  + +  N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 583 GQIPECLGN-STLQVLDMRMNNFSG--SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNC 639
                      +LQ L +R        S P  F     L  L+L+ N +       L   
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 640 QYLEVLDVGNNQIDD--------TFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPK 691
           + LE+LD+ +N +             Y+L  L  L +L L SN F     +        +
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK--DLFE 561

Query: 692 LRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL 751
           L+I+D   N L  +                                   S+F     +  
Sbjct: 562 LKIIDLGLNNLNTLPA---------------------------------SVFNNQVSL-- 586

Query: 752 QMERILTTFATIDLSSNRFQRKIPEVVGK-LNSLKSLNISHNNLTGCIPSSLRNLTELES 810
                     +++L  N       +V G    +L  L++  N    C   S+     +  
Sbjct: 587 ---------KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD-CTCESIAWF--VNW 634

Query: 811 LDLSSNKLAG 820
           ++ +   +  
Sbjct: 635 INETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  303 bits (779), Expect = 3e-91
 Identities = 124/656 (18%), Positives = 218/656 (33%), Gaps = 64/656 (9%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L+L+ + L     +  +     +L  L++ FN    SK+      + P L +L+L     
Sbjct: 30  LNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNEL 85

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
           +     +     T L  L L  NS      + F     L  LDL  N        +    
Sbjct: 86  SQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQ--QLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
              L  L LS+N                 L  L+L  N      P      I +L  L L
Sbjct: 145 -ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFL 202

Query: 269 SSNGFSGHIPSSFS---NLQQLLWLNLEYNNFVGKIPDMFTNL--TQLSFLGLAYNELIG 323
           ++      +            +  L+L  +         F  L  T L+ L L+YN L  
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
               S   L  L   +L ++N    +  +    L N++ L+L                  
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKR---------------- 305

Query: 384 NLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442
           + +   +S  ++ +  D   +    LE L++ +N I G   +     G+  L  L LS +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNS 363

Query: 443 FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQY 502
           F  S+  L  +      L  + L              +++ N ++     +F  L  ++ 
Sbjct: 364 FT-SLRTLTNETFV--SLAHSPLH-----------ILNLTKNKISKIESDAFSWLGHLEV 409

Query: 503 LDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG- 559
           LDL  N +  ++      G   +  + L  N +      + A    L  L L    L+  
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 560 -PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFS--------GSLP 609
              P        L  LD+ NNN++    + L     L++LD++ NN +        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
                   L  LNL  N           +   L+++D+G N ++       +  + L+ L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 670 ILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725
            L+ N              F  L  +D   N          +  F   ++  + ++
Sbjct: 590 NLQKNLITSVEKKV-FGPAFRNLTELDMRFNPFDCTCES--IAWFVNWINETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (488), Expect = 2e-51
 Identities = 86/441 (19%), Positives = 159/441 (36%), Gaps = 48/441 (10%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDL----- 145
           LDLS + L+       S  +LP+L    L +N+     + S       ++  L+L     
Sbjct: 253 LDLSYNNLNVVGND--SFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFT 308

Query: 146 ---CSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
               S      I       +  L +L++  N   G   + F+ L  L++L L ++    +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 203 IPAS---LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN 259
              +   +    + L  L+L+ N  S     +FS L  L  LDL  N    E+       
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF--VGKIPDMFTNLTQLSFLGLA 317
           +  +  + LS N +     +SF+ +  L  L L       V   P  F  L  L+ L L+
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT 377
            N +       +  L  L  + L  +N            L  L   +     +     L+
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNN------------LARLWKHANPGGPIYFLKGLS 536

Query: 378 ANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
                 +L  L+L +    E P    +   +L+++DL  N +     S        +L  
Sbjct: 537 ------HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF--NNQVSLKS 588

Query: 437 LDLSRNFLTSID----HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
           L+L +N +TS++       ++NL  L +  N    +   +   +   + ++ ++      
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

Query: 493 SFCNL------SSIQYLDLSN 507
             CN         ++  D S+
Sbjct: 649 YLCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (398), Expect = 6e-40
 Identities = 75/331 (22%), Positives = 124/331 (37%), Gaps = 23/331 (6%)

Query: 520 NSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579
             + E  D         +P        +T L L+ N L      + T   +L  LDVG N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 580 NLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVN 638
            +S   PE       L+VL+++ N  S    +TFA    L  L+L  N ++       V 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 639 CQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCS 698
            + L  LD+ +N +  T       L  LQ L+L +N+      +         L+ ++ S
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 699 HNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILT 758
            NQ+    P      F A+  G    + +  ++L  S    E + L +    ++      
Sbjct: 180 SNQIKEFSP----GCFHAI--GRLFGLFLNNVQLGPSLT--EKLCLELANTSIR------ 225

Query: 759 TFATIDLSSNRFQRKIPEVVGKLN--SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
               + LS+++           L   +L  L++S+NNL      S   L +LE   L  N
Sbjct: 226 ---NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 817 KLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
            +       L  L  +  LNL  +  +  I 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 8e-18
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 51/236 (21%)

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
           +      + +  +L   +P  L     + VL++ +NQ+            +L  L +  N
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPG 734
                  +       P L++++  HN+L+ +      ++F                    
Sbjct: 60  TISKLEPELCQ--KLPMLKVLNLQHNELSQLSD----KTFAF------------------ 95

Query: 735 SSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794
                                  T    + L SN  Q+       K  +L +L++SHN L
Sbjct: 96  ----------------------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN--YLSVLNLSNNQLEGPIPG 848
           +     +   L  L+ L LS+NK+      +L       L  L LS+NQ++   PG
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  310 bits (797), Expect = 1e-94
 Identities = 116/579 (20%), Positives = 201/579 (34%), Gaps = 44/579 (7%)

Query: 144 DLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKI 203
                NF   IP +L  +      LDLS N        SF +  +L+ LDL         
Sbjct: 13  QCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL 263
             +  +  + L+ L L+ N        +FS L  L  L   + +        +G ++  L
Sbjct: 69  DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTL 126

Query: 264 AYLDLSSNGF-SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF----LGLAY 318
             L+++ N   S  +P  FSNL  L  L+L  N            L Q+      L L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 319 NELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA 378
           N  +  I    F+ + L ++ L  +  S +V       L  L+V  L          L  
Sbjct: 187 NP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 379 --NSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
              S+   L  L +    ++              LD   + I            +  +  
Sbjct: 246 FDKSALEGLCNLTIEEFRLA-------------YLDYYLDDIIDLFN------CLTNVSS 286

Query: 437 LDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
             L    +  +    +    ++L L +             +   + ++N        S  
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEV 344

Query: 496 NLSSIQYLDLSNNSLS--GQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
           +L S+++LDLS N LS  G   Q    +T L+ LDL  N     +        +L +L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 553 SGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSL-P 609
             ++L+     S   +   L +LD+ + +            S+L+VL M  N+F  +  P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
             F +   L  L+L+  +L+   P +  +   L+VL++ +N       +    L  LQVL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 670 ILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
               N           +     L  ++ + N        
Sbjct: 524 DYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  281 bits (720), Expect = 1e-83
 Identities = 125/592 (21%), Positives = 192/592 (32%), Gaps = 57/592 (9%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           LDLS + L        S F  P L+ L+L+  +     I  G       L+ L L     
Sbjct: 33  LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPI 88

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
                 +     + L  L     +          +L  L+ L++  N           +N
Sbjct: 89  QSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQL----CYLDLDDNHFVGEIPASLGNNITQLAYL 266
           +T L +LDLSSN       +    L Q+      LDL  N      P +      +L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKL 205

Query: 267 DLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGK------IPDMFTNLTQLSFLGLAYN 319
            L +N  S ++       L  L    L    F  +             L  L+       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 320 EL---IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
            L   +  I      L N++   L          + DF+     + L L N         
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFP-- 320

Query: 377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
                  +L  L  ++         +     LE LDLS N +  +      D G  +L  
Sbjct: 321 --TLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 437 LDLSRNFLTSIDH--LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF 494
           LDLS N + ++    L  + LE+L    ++L+                         S F
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--------------------FSVF 417

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGC-KLTYLRL 552
            +L ++ YLD+S+              S+LE L +  N+FQ +           LT+L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQT 611
           S   LE   P +  +   LQ L++ +NN              LQVLD  +N+   S  Q 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 612 FAKSCV-LVSLNLNGNRLKG--PLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
                  L  LNL  N           L   +    L V   +++   P   
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  270 bits (692), Expect = 1e-79
 Identities = 119/692 (17%), Positives = 206/692 (29%), Gaps = 158/692 (22%)

Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           ++L+      ++P S       ++LDL  N        S  +   +L  LDLS       
Sbjct: 15  MELNFYKIPDNLPFS------TKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTI 67

Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
              ++ +L  L  L L  N        +     + L  L       +        +L+ L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 288 LWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFS 346
             LN+ +N     K+P+ F+NLT L  L L+ N++     +                   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------------------- 167

Query: 347 GSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQH 406
                 D   L  + +L+LS                     LDLS   ++        + 
Sbjct: 168 ------DLRVLHQMPLLNLS---------------------LDLSLNPMNFIQPGAFKEI 200

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW------KNLEYLHL 460
           +L  L L  N     +       G+  L    L      +  +L        + L  L +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 461 DSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN 520
           +   L                  +    +I   F  L+++    L + ++  ++     N
Sbjct: 260 EEFRLA---------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN 303

Query: 521 STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN 580
              + L+L    F              +  RL+    +G    S  +   L+FLD+  N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKL-----KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 581 LS--GQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS-L 636
           LS  G   +    +T L+ LD+  N     +   F     L  L+   + LK     S  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 637 VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMD 696
           ++ + L  LD+ +      F    + L                            L ++ 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGL--------------------------SSLEVLK 451

Query: 697 CSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERI 756
            + N                                                        
Sbjct: 452 MAGNSFQENFLPDIFTE------------------------------------------- 468

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L     +DLS  + ++  P     L+SL+ LN+SHNN         + L  L+ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 817 KLAGRIPTQLASLNY-LSVLNLSNNQLEGPIP 847
            +      +L      L+ LNL+ N       
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  262 bits (672), Expect = 6e-77
 Identities = 120/649 (18%), Positives = 206/649 (31%), Gaps = 92/649 (14%)

Query: 218 DLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
                +F   IP +   + +    LDL  N        S  +   +L  LDLS       
Sbjct: 13  QCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTI 67

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
              ++ +L  L  L L  N         F+ L+ L  L      L       I  L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSA----LDLSA 392
           E+ ++ +          F+ L NL+ L LS+  +      T       +      LDLS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSL 186

Query: 393 CNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW 452
             ++        + +L  L L  N     +       G+  L    L      +  +L  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEK 245

Query: 453 ------KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
                 + L  L ++   L                  +    +I   F  L+++    L 
Sbjct: 246 FDKSALEGLCNLTIEEFRLA---------------YLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT 566
           + ++  ++     N   + L+L    F              +  RL+    +G    S  
Sbjct: 291 SVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL-----KSLKRLTFTSNKGGNAFSEV 344

Query: 567 NCVKLQFLDVGNNNLS--GQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNL 623
           +   L+FLD+  N LS  G   +    +T L+ LD+  N     +   F     L  L+ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 624 NGNRLKGPLPPS-LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGD 682
             + LK     S  ++ + L  LD+ +      F    + L  L+VL +  N F      
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-L 462

Query: 683 TKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                    L  +D S  QL  + P     +F +                          
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSP----TAFNS-------------------------- 492

Query: 743 FLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL 802
                         L++   +++S N F          LNSL+ L+ S N++       L
Sbjct: 493 --------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 803 RNL-TELESLDLSSNKLAGRIPTQ--LASLNYLSVLNLSNNQLEGPIPG 848
           ++  + L  L+L+ N  A     Q  L  +     L +   ++E   P 
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  284 bits (728), Expect = 2e-84
 Identities = 106/658 (16%), Positives = 200/658 (30%), Gaps = 90/658 (13%)

Query: 31  DQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSW---DGVTCDSATGH 87
             +  +  +  L       +      Q        +W  + +   W    GV+ +S  G 
Sbjct: 24  RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGR 82

Query: 88  VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCS 147
           V GL L      G +P   ++  L  L  L L  +                         
Sbjct: 83  VTGLSLEGFGASGRVPD--AIGQLTELEVLALGSH------------------------- 115

Query: 148 CNFTG----SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH--QLRHLDLQSNNFVG 201
                      P  +  N             +               L    + S+    
Sbjct: 116 -GEKVNERLFGPKGISAN-MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
            I  S      +   +   SN+ +  +  +   L +L    + ++ FV E       N  
Sbjct: 174 SIKKSSRIT-LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-- 229

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
                +             + NL+ L  + +     + K+P     L ++  + +A N  
Sbjct: 230 ----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 322 I--------GSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373
           I            +       +  IY+ ++N           K+K L +L      L   
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL--E 343

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQ-HQLELLDLSENQIGGRIPSWMWDIGVH 432
            KL A  S   L++L+L+   I+E P N      Q+E L  + N++   IP+      V 
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 433 TLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
            +  +D S N + S+D   +  L+       ++            S ++SNN ++     
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS-----------SINLSNNQISKFPKE 451

Query: 493 SFCNLSSIQYLDLSNNSLSG-------QIPQCLGNST-LETLDLRMNNFQGSIPQTNAKG 544
            F   S +  ++L  N L+           +   N+  L ++DLR N          A  
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 545 C-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN------NNLSGQIPECLGN-STLQV 596
              L  + LS N      P    N   L+   + N      N    + PE +    +L  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
           L +  N+    + +    +  +  L++  N         +       +  +  ++  D
Sbjct: 571 LQIGSNDIR-KVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  279 bits (715), Expect = 1e-82
 Identities = 96/724 (13%), Positives = 209/724 (28%), Gaps = 164/724 (22%)

Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
           L+  + +  G       N        +  ++ +      S ++  ++  L L+     G+
Sbjct: 42  LNGKNWSQQGFGTQPGANWNF-----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGR 96

Query: 203 IPASLGNNITQLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
           +P ++G  +T+L  L L S+          P   S             H+          
Sbjct: 97  VPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 259 -NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
            + + L    ++S+     I  S     +   +    NN    +      LT+L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT 377
            +  +       +E  N       ++    + +L  +  LK+L  + + N          
Sbjct: 215 NSPFVAENICEAWENENS-----EYAQQYKTEDL-KWDNLKDLTDVEVYNCPNL------ 262

Query: 378 ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIEL 437
                             ++ P  L+   +++L++++ N+               +  +L
Sbjct: 263 ------------------TKLPTFLKALPEMQLINVACNRG-------------ISGEQL 291

Query: 438 DLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNL 497
                 L        + ++ +++  N+L+                    T  + +S   +
Sbjct: 292 KDDWQALADAPVG--EKIQIIYIGYNNLK--------------------TFPVETSLQKM 329

Query: 498 SSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNH 556
             +  L+   N L G++P   G+   L +L+L  N              ++  L  + N 
Sbjct: 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 557 LEG-PLPPSLTNCVKLQFLDVGNNNLSG-------QIPECLGNST-LQVLDMRMNNFSGS 607
           L+  P      +   +  +D   N +          +         +  +++  N  S  
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 608 LPQTFAKSCVLVSLNLNGNRLKG-------PLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
             + F+    L S+NL GN L             +  N   L  +D+  N++        
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD--- 505

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP-LWYLESFKAMMH 719
               + +   L                  P L  +D S+N  +          + K    
Sbjct: 506 ----DFRATTL------------------PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 720 GNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVG 779
            N                                          D   NR  R+ PE + 
Sbjct: 544 RNQ----------------------------------------RDAQGNRTLREWPEGIT 563

Query: 780 KLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN 839
              SL  L I  N++   +   +     +  LD+  N       + +       +  L  
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 840 NQLE 843
           ++ +
Sbjct: 621 DKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  257 bits (658), Expect = 1e-74
 Identities = 83/688 (12%), Positives = 187/688 (27%), Gaps = 148/688 (21%)

Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG----HIPSSFSNLHQLR 190
           +    +T L L     +G +P ++G  +T+L  L L  +          P   S      
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 191 HLDLQSNNFVGKIPASLGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
                  ++           + + L    ++S+     I  S     +   +    N+  
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI- 195

Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
             +  ++   +T+L    + ++ F                 N EY          + NL 
Sbjct: 196 TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLK 249

Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYD-------FAKLKNLKV 362
            L+ + +     +  +P+ +  L  +  I ++ +      +L D           + +++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 363 LSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRI 422
           + +   +L      T+      L  L+     +        ++ +L  L+L+ NQI   I
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-I 368

Query: 423 PSWMWDIGVHTLIELDLSRNFLTSIDHLP----WKNLEYLHLDSNSLQGSLPDLPPHMVS 478
           P+         +  L  + N L  I ++        +  +    N +             
Sbjct: 369 PANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS----------- 416

Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSI 537
             +   +    +  +     ++  ++LSNN +S    +     + L +++L  N     I
Sbjct: 417 --VDGKNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-I 472

Query: 538 PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVL 597
           P                 +       +  N   L  +D+  N L+  + +    +TL  L
Sbjct: 473 P----------------KNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515

Query: 598 DMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
                                V ++L+ N      P   +N   L+   + N        
Sbjct: 516 ---------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------- 546

Query: 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM 717
                         + NR      +  T    P L  +    N +               
Sbjct: 547 -----------RDAQGNRTLREWPEGITL--CPSLTQLQIGSNDIRK------------- 580

Query: 718 MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEV 777
                         +                       I    + +D+  N         
Sbjct: 581 --------------VNEK--------------------ITPNISVLDIKDNPNISIDLSY 606

Query: 778 VGKLNSLKSLNISHNNLTGCIPSSLRNL 805
           V          + ++           ++
Sbjct: 607 VCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  242 bits (620), Expect = 2e-69
 Identities = 85/609 (13%), Positives = 179/609 (29%), Gaps = 73/609 (11%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           L+  +    G      +N       N E + +  +      +  +++ L L      G +
Sbjct: 42  LNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97

Query: 326 PSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
           P +I +L  L  + L       +  L+    +                      +     
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ----KTFVDYD 153

Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT 445
              D S                L    ++ +     I             ++    N +T
Sbjct: 154 PREDFS---------------DLIKDCINSDPQQKSIKKSS--RITLKDTQIGQLSNNIT 196

Query: 446 SIDH--LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYL 503
            +    +    L   ++ ++              + +             + NL  +  +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 504 DLSNNSLSGQIPQCLGN-STLETLDLRMNNF--------QGSIPQTNAKGCKLTYLRLSG 554
           ++ N     ++P  L     ++ +++  N                    G K+  + +  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 555 NHL-EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQTF 612
           N+L   P+  SL    KL  L+   N L G++P   G+   L  L++  N  +       
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFC 373

Query: 613 AKSCVLVSLNLNGNRLKG-PLPPSLVNCQYLEVLDVGNNQID-------DTFPYWLDVLL 664
             +  + +L+   N+LK  P      +   +  +D   N+I        D         +
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
            +  + L +N+      +  +      L  ++   N LT  +P   L+            
Sbjct: 434 NVSSINLSNNQISKFPKELFST--GSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYL- 489

Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL 784
             +  + L    N    +    +   L     +      DLS N F  K P      ++L
Sbjct: 490 --LTSIDL--RFNKLTKLSDDFRATTLPYLVGI------DLSYNSFS-KFPTQPLNSSTL 538

Query: 785 KSLNISH------NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 838
           K   I +      N      P  +     L  L + SN +   +  ++     +SVL++ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIK 595

Query: 839 NNQLEGPIP 847
           +N       
Sbjct: 596 DNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (418), Expect = 1e-42
 Identities = 55/390 (14%), Positives = 126/390 (32%), Gaps = 67/390 (17%)

Query: 475 HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ----IPQCLGN-STLETLDLR 529
            +   S+     +G +P +   L+ ++ L L ++          P+ +    + E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 530 MNNFQGSIPQTNAKGC--KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE 587
             ++Q +    + +     L    ++ +  +  +  S    +K   +   +NN++  + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 588 CLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646
            +   + L+   M  + F         ++      N    +          N + L  ++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP------KLRIMDCSHN 700
           V N       P +L  L E+Q++ +  NR                     K++I+   +N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTF 760
            L        L                                             +   
Sbjct: 316 NLKTFPVETSL--------QK-----------------------------------MKKL 332

Query: 761 ATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
             ++   N+ + K+P   G    L SLN+++N +T    +      ++E+L  + NKL  
Sbjct: 333 GMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 821 RIP--TQLASLNYLSVLNLSNNQLEGPIPG 848
            IP      S++ +S ++ S N++      
Sbjct: 392 -IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 7e-11
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 7/105 (6%)

Query: 779 GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG----RIPTQLASLNYLSV 834
                +  L++     +G +P ++  LTELE L L S+          P  +++      
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 835 LNLSNNQLEGPIPGGPQFNTFGN---DSYSGNSGLCGFPLSKSCS 876
                   +           F +   D  + +        S   +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 22/161 (13%), Positives = 41/161 (25%), Gaps = 29/161 (18%)

Query: 103 PSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-- 160
             N +      L  ++L FN               P L  +DL   +F+   P    N  
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 161 ---NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT----- 212
                      D   N  +   P   +    L  L + SN+    +   +  NI+     
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVLDIK 595

Query: 213 ----------------QLAYLDLSSNSFSGHIPSSFSNLQQ 237
                           +     L  +           ++++
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 10/115 (8%), Positives = 28/115 (24%), Gaps = 7/115 (6%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTG----CIPSSLRNLTELESLDLSSNK 817
            + L       ++P+ +G+L  L+ L +  +          P  +      E        
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 818 LAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLS 872
                       ++    +L  + +           +          G     ++
Sbjct: 145 YQKTFVDYDPREDFS---DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  273 bits (699), Expect = 1e-80
 Identities = 101/553 (18%), Positives = 196/553 (35%), Gaps = 29/553 (5%)

Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
            +  +      IP +L N+      L+ S N       ++FS L  L  LDL        
Sbjct: 17  YNCENLGLN-EIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
              +  +   +L  L L++N       ++ S  + L +L              L N    
Sbjct: 73  HEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKT 130

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL- 321
           L  L L SN  S          ++L  L+ + N       +  ++L Q + L L  N   
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 322 IGSIPSSIFELLNLTEIYLSFSNFSG-SVELYDFAKLKNLKVLSLSNISLSVSTKLT-AN 379
           I  I    F+      +    +       +    + +++L + +  ++     +      
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 380 SSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELD 438
               ++ +++L          N       L+ LDL+   +   +PS +   G+ TL +L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLV 307

Query: 439 LSRNFLTSIDHL---PWKNLEYLHLDSNSLQGSLPDLP----PHMVSFSISNNSLT--GE 489
           LS N   ++  +    + +L +L +  N+ +  L         ++    +S++ +     
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCK-L 547
                 NLS +Q L+LS N       +       LE LDL     +    Q+  +    L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN----STLQVLDMRMNN 603
             L LS + L+            LQ L++  N+      +   +      L++L +   +
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
            S      F    ++  ++L+ NRL        ++      L++ +N I    P  L +L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPIL 546

Query: 664 LELQVLILRSNRF 676
            + + + LR N  
Sbjct: 547 SQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  242 bits (621), Expect = 7e-70
 Identities = 111/664 (16%), Positives = 203/664 (30%), Gaps = 142/664 (21%)

Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
           +  + ++     +IP +L N+      L+ S N       ++FS L  L +LDL      
Sbjct: 15  KTYNCENLGLN-EIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
                +  +   +L  L L++N       ++ S  + L  L                N  
Sbjct: 71  WIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
            L  L L  N +        F    L  +    +     +   D + L+    LSL    
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL---- 184

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
                              +L+  +I+            + L+    Q    I   + + 
Sbjct: 185 -------------------NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 430 GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE 489
            + +L            I    ++ L  + +                 S ++  +     
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSV----------------ESINLQKHYFFNI 269

Query: 490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLT 548
             ++F   S +Q LDL+   LS ++P  L   STL+ L L  N F+     + +    LT
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 549 YLRLSGNHLEGPLPP-SLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS 607
           +L + GN     L    L N   L+ LD+ ++++                       S  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE---------------------TSDC 367

Query: 608 LPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667
                     L SLNL+ N        +   C  LE+LD+   ++           L   
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL--- 424

Query: 668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV 727
                                   L++++ SH+ L         + F  +          
Sbjct: 425 ----------------------HLLKVLNLSHSLLDISSE----QLFDGLPA-------- 450

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVG---KLNSL 784
                                  LQ          ++L  N F +   +       L  L
Sbjct: 451 -----------------------LQ---------HLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 785 KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 844
           + L +S  +L+     +  +L  +  +DLS N+L       L+ L  +  LNL++N +  
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537

Query: 845 PIPG 848
            +P 
Sbjct: 538 ILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  241 bits (616), Expect = 4e-69
 Identities = 112/539 (20%), Positives = 181/539 (33%), Gaps = 42/539 (7%)

Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
            N++   L  L  L+L         I          L  L L +      +  +  +   
Sbjct: 49  QNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPK 105

Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
            L +L                N   L  L L SN+    I    G    +L  LD  +N+
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNA 164

Query: 224 FSGHIPSSFSNLQQLCYLDLDDNH-FVGEIPASLGNNITQLAYLDLSSNGFSGHIPS--S 280
                    S+LQQ   L L+ N   +  I     ++      L+         I     
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLK 223

Query: 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS--FLGLAYNELIGSIPSSIFELLNLTEI 338
            S +Q L     E  +     P +F  L ++S   + L  +       ++      L E+
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 339 YLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI--S 396
            L+ ++ S          L  LK L LS        +++A S+FP+L+ L +        
Sbjct: 284 DLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLE 340

Query: 397 EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK--- 453
                L     L  LDLS + I       +    +  L  L+LS N   S+    +K   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
            LE L L    L+                         S F NL  ++ L+LS++ L   
Sbjct: 401 QLELLDLAFTRLKVKDA--------------------QSPFQNLHLLKVLNLSHSLLDIS 440

Query: 514 IPQCLGN-STLETLDLRMNNFQGSIPQTNA--KGC-KLTYLRLSGNHLEGPLPPSLTNCV 569
             Q       L+ L+L+ N+F     Q     +   +L  L LS   L      + T+  
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
            +  +D+ +N L+    E L +     L++  N+ S  LP          ++NL  N L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (603), Expect = 2e-67
 Identities = 95/484 (19%), Positives = 168/484 (34%), Gaps = 23/484 (4%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L L+ + L     +  +L     L+ L         S I         +L  L L   N 
Sbjct: 86  LVLTANPLIFMAET--ALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESLYL-GSNH 140

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ-SNNFVGKIPASLGN 209
             SI    G    +L  LD   N+         S+L Q  +L L  + N +  I     +
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 210 NITQLAYLDLSSNSFSGHIPS--SFSNLQQLCYLDLDDNHFVGEIPASL-GNNITQLAYL 266
           +      L+         I      S +Q L     +D       PA   G     +  +
Sbjct: 201 SA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
           +L  + F     ++F     L  L+L   +   ++P     L+ L  L L+ N+      
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 327 SSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN-SSFPNL 385
            S     +LT + +  +     +       L+NL+ L LS+  +  S        +  +L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 386 SALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
            +L+LS            +   QLELLDL+  ++     +      +H L  L+LS + L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLL 437

Query: 445 TSIDHLPW---KNLEYLHLDSNSLQGSLPDLP------PHMVSFSISNNSLTGEIPSSFC 495
                  +     L++L+L  N                  +    +S   L+     +F 
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
           +L  + ++DLS+N L+    + L +     L+L  N+    +P       +   + L  N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 556 HLEG 559
            L+ 
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (402), Expect = 1e-40
 Identities = 68/329 (20%), Positives = 121/329 (36%), Gaps = 22/329 (6%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           ++L   +      +  +      L++L+L       S++ SG      +L  L L +  F
Sbjct: 259 INLQKHYFFNISSN--TFHCFSGLQELDLTATHL--SELPSGLVG-LSTLKKLVLSANKF 313

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLG- 208
                 S  N    L +L +  N+    + +    NL  LR LDL S++ +         
Sbjct: 314 ENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDL-SHDDIETSDCCNLQ 371

Query: 209 -NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267
             N++ L  L+LS N        +F    QL  LDL       +   S   N+  L  L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI---PDMFTNLTQLSFLGLAYNELIGS 324
           LS +         F  L  L  LNL+ N+F        +    L +L  L L++ +L   
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPN 384
              +   L  +  + LS +  + S  +   + LK +  L+L++  +S     +       
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQ 548

Query: 385 LSALDLSA------CNISEFPDNLRTQHQ 407
              ++L        C+   F +  +   Q
Sbjct: 549 QRTINLRQNPLDCTCSNIYFLEWYKENMQ 577

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 8e-38
 Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 5/268 (1%)

Query: 105 NSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLG-NNIT 163
             S    P L  L++  N      + +G  +   +L  LDL   +   S   +L   N++
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
            L  L+LS N  +     +F    QL  LDL       K   S   N+  L  L+LS + 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 224 FSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN--NITQLAYLDLSSNGFSGHIPSSF 281
                   F  L  L +L+L  NHF         +   + +L  L LS    S     +F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 282 SNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS 341
           ++L+ +  ++L +N       +  ++L  + +L LA N +   +PS +  L     I L 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 342 FSNFSGSVELYDFAKLKNLKVLSLSNIS 369
            +    +     F +     +  L +  
Sbjct: 556 QNPLDCTCSNIYFLEWYKENMQKLEDTE 583

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 8e-13
 Identities = 42/273 (15%), Positives = 76/273 (27%), Gaps = 57/273 (20%)

Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLK---GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLD 661
           + S  Q   +  V  + N     L    G LP S       E L+   N +         
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNST------ECLEFSFNVLPTIQNTTFS 54

Query: 662 VLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGN 721
            L+ L  L L   + +    DT       +L  +  + N L  +       +        
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLIFMAE----TALSGPKA-- 106

Query: 722 NNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL 781
                                        L+          +              +   
Sbjct: 107 -----------------------------LK---------HLFFIQTGISSIDFIPLHNQ 128

Query: 782 NSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV--LNLSN 839
            +L+SL +  N+++           +L+ LD  +N +       ++SL   +   LNL+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 840 NQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLS 872
           N + G  PG      F + ++ G   L      
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  254 bits (652), Expect = 5e-74
 Identities = 106/537 (19%), Positives = 182/537 (33%), Gaps = 29/537 (5%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
             S   +DL           S  N  ++L +LDLS          ++  LH L +L L  
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
           N      P S     T L  L       +         L  L  L++  N        + 
Sbjct: 90  NPIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE---YNNFVGKIPDMFTNLTQLSF 313
            +N+T L ++DLS N       +    L++   +NL      N +  I D      +L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 314 LGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAK--LKNLKVLSLSNISL 370
           L L  N    +I  +  + L  L    L    F     L  F    ++ L  +++    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 371 S----VSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWM 426
           +     S  +       N+SA+ L+  +I    D +    + + L +   Q+       +
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 427 WDIGVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSNSLQGSLPDL-----PPHMVSFS 480
                  L  L L+ N  +         +L YL L  N+L  S            +    
Sbjct: 328 -----PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIP 538
           +S N     + ++F  L  +Q+LD  +++L              L  LD+   N +    
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPECLGNST-LQV 596
                   L  L+++GN  +     +   N   L FLD+    L             LQ+
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           L+M  NN        + +   L +L+ + NR++          + L   ++ NN + 
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  253 bits (647), Expect = 2e-73
 Identities = 118/671 (17%), Positives = 203/671 (30%), Gaps = 120/671 (17%)

Query: 177 GHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ 236
           G +      +  +            K+P  + ++      +DLS N        SFSN  
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFS 56

Query: 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
           +L +LDL           +    +  L+ L L+ N      P SFS L  L  L      
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFA 355
                      L  L  L +A+N +      + F  L NL  + LS++    ++ + D  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQ 174

Query: 356 KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSE 415
            L+    ++LS                     LD+S   I    D      +L  L L  
Sbjct: 175 FLRENPQVNLS---------------------LDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPH 475
           N     I        +  L    L         +L          + + ++G L D+   
Sbjct: 214 NFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLE-------IFEPSIMEG-LCDV--T 262

Query: 476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQG 535
           +  F ++  +   +    F  L+++  + L+  S+   +     +   ++L +     + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK- 320

Query: 536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP---ECLGNS 592
             P  +     L  L L+ N     +         L +LD+  N LS         LG +
Sbjct: 321 QFPTLDLP--FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS-LVNCQYLEVLDVGNNQ 651
           +L+ LD+  N     +   F     L  L+   + LK     S  ++ + L  LD+    
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 652 IDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711
               F                                   L  +  + N           
Sbjct: 436 TKIDFDGIFL--------------------------GLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQ 771
            +                                            T    +DLS  + +
Sbjct: 470 AN-------------------------------------------TTNLTFLDLSKCQLE 486

Query: 772 RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 831
           +    V   L+ L+ LN+SHNNL     S    L  L +LD S N++             
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 832 LSVLNLSNNQL 842
           L+  NL+NN +
Sbjct: 547 LAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  244 bits (625), Expect = 2e-70
 Identities = 99/524 (18%), Positives = 165/524 (31%), Gaps = 35/524 (6%)

Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
            + S      L+ L+L+  +     I          L+ L L       S  P   + +T
Sbjct: 48  KSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLT 104

Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
            L  L                 L  L+ L++  N        +  +N+T L ++DLS N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 224 FSGHIPSSFSNLQQLC----YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
                 +    L++       LD+  N     I       I +L  L L  N  S +I  
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222

Query: 280 -SFSNLQQLLWLNLEYNNFVGKI------PDMFTNLTQLSF--LGLAYNELIGSIPSSIF 330
               NL  L    L    F  +       P +   L  ++     L Y            
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDL 390
            L N++ + L+  +      L D  K    + LS+    L            P L +L L
Sbjct: 283 CLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFP----TLDLPFLKSLTL 335

Query: 391 SACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL 450
           +    S           L  LDLS N +         D+G ++L  LDLS N    +   
Sbjct: 336 TMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 451 PW--KNLEYLHLDSNSLQGSLPDLP----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
               + L++L    ++L+             ++   IS  +   +    F  L+S+  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 505 LSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP 562
           ++ NS        +    + L  LDL     +           +L  L +S N+L     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 563 PSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFS 605
                   L  LD   N +            +L   ++  N+ +
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (457), Expect = 8e-48
 Identities = 78/486 (16%), Positives = 145/486 (29%), Gaps = 58/486 (11%)

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI 447
                  +S+ PD++ +    + +DLS N +               L  LDLSR  + +I
Sbjct: 16  YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETI 71

Query: 448 DH---LPWKNLEYLHLDSNSLQGSLPDLPPHMVS---FSISNNSLTGEIPSSFCNLSSIQ 501
           +        +L  L L  N +Q   P     + S          L          L +++
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 502 YLDLSNNSLSG-QIPQCLGNST-LETLDLRMNNFQGSIPQT----NAKGCKLTYLRLSGN 555
            L++++N +   ++P    N T L  +DL  N  Q                   L +S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE--CLGNSTLQVLDMRMNNFSGSL----- 608
            ++  +       +KL  L +  N  S  I +      + L V  + +  F         
Sbjct: 192 PIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 609 -PQTFAKSCVLV--SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
            P      C +      L                  +  + +    I       +    +
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFK 308

Query: 666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM-MHGNNNS 724
            Q L +   +           +  P L+ +  + N+ +       L S   + +  N  S
Sbjct: 309 WQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL 784
                             +  +    L+          +DLS N     +      L  L
Sbjct: 364 ------------FSGCCSYSDLGTNSLR---------HLDLSFNGAII-MSANFMGLEEL 401

Query: 785 KSLNISHNNLTGCIP-SSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           + L+  H+ L      S+  +L +L  LD+S              L  L+ L ++ N  +
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 844 GPIPGG 849
                 
Sbjct: 462 DNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (403), Expect = 7e-41
 Identities = 75/443 (16%), Positives = 131/443 (29%), Gaps = 52/443 (11%)

Query: 429 IGVHTLIELDLSRNFLTSI-DHLPWKNLEYLHLDSNSLQ----GSLPDLPPHMVSFSISN 483
           I V   I        L+ + D +P  + + + L  N L+     S  +    +    +S 
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSR 65

Query: 484 NSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNA 542
             +      ++  L  +  L L+ N +    P      T LE L                
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 543 KGCKLTYLRLSGNHLEG-PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-----STLQV 596
           +   L  L ++ N +    LP   +N   L  +D+  N +       L            
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLD------VGN 649
           LDM +N       Q F +   L  L L GN     +    L N   L V           
Sbjct: 186 LDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 650 NQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW 709
             ++   P  ++ L ++ +   R         D         +  M  +   +  +  + 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 710 YLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNR 769
               ++++        +      P                       L    ++ L+ N+
Sbjct: 305 KHFKWQSLSIIRCQLKQ-----FPTLD--------------------LPFLKSLTLTMNK 339

Query: 770 FQRKIPEVVGKLNSLKSLNISHNNLT--GCIPSSLRNLTELESLDLSSNKLAGRIPTQLA 827
               I      L SL  L++S N L+  GC   S      L  LDLS N     +     
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396

Query: 828 SLNYLSVLNLSNNQLEGPIPGGP 850
            L  L  L+  ++ L+       
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (397), Expect = 4e-40
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 98  LHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPS 157
           +            LP L+ L L  N  + S          PSL+ LDL     + S   S
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL----PSLSYLDLSRNALSFSGCCS 369

Query: 158 LGN-NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216
             +     L +LDLS N     + ++F  L +L+HLD Q +        S   ++ +L Y
Sbjct: 370 YSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           LD+S  +        F  L  L  L +  N F     +++  N T L +LDLS       
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
               F  L +L  LN+ +NN +      +  L  LS L  ++N +  S         +L 
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 337 EIYLSFSNFS---GSVELYDFAKLKNLKVLSLSNI 368
              L+ ++ +      +   + K +   ++++  +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (283), Expect = 8e-26
 Identities = 52/377 (13%), Positives = 101/377 (26%), Gaps = 81/377 (21%)

Query: 488 GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKL 547
           G +      + +I      +  LS ++P  + +S  + +DL  N  +     + +   +L
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFSG 606
            +L LS   +E     +      L  L +  N +    P      T L+ L       + 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKG-PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
                  +   L  LN+  N +    LP    N   L  +D+  N I       L  L E
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725
                                        +D S N +  +      ++F+ +        
Sbjct: 179 NP----------------------QVNLSLDMSLNPIDFIQD----QAFQGI-------- 204

Query: 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK-LNSL 784
                                                + L  N     I +   + L  L
Sbjct: 205 ---------------------------------KLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 785 KSLNISHNNLTGCI------PSSLRNLTEL--ESLDLSSNKLAGRIPTQLASLNYLSVLN 836
               +               PS +  L ++  +   L+          +   L  +S ++
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 837 LSNNQLEGPIPGGPQFN 853
           L+   ++        F 
Sbjct: 292 LAGVSIKYLEDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-12
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            +DLS    +    +    L+ L +L ++ N +    P S   LT LE+L     KLA  
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGN 857
               +  L  L  LN+++N +         F+   N
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  257 bits (658), Expect = 6e-73
 Identities = 93/618 (15%), Positives = 191/618 (30%), Gaps = 98/618 (15%)

Query: 60  SRPKMMSWKEDADCCSWDGVTCDS--ATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKL 117
           +    ++W  + +   W           G V GL L+     G +P   ++  L  L+ L
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVL 352

Query: 118 NLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSF-- 175
           +   +    +     F D+  +  + +               +   +L   DL  ++   
Sbjct: 353 SFGTHSE--TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 176 --------------------------IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
                                     I  I  +   L +L+ +   ++ F     A    
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
           +       +        +   S+SNL+ L  ++L +   + ++P  L  ++ +L  L+++
Sbjct: 471 D------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIA 523

Query: 270 SNGFSG---------HIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYN 319
            N              +        ++    + YNN            + +L  L   +N
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583

Query: 320 ELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN 379
           ++      +    + LT++ L ++     +     A    ++ L  S+  L     +   
Sbjct: 584 KV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640

Query: 380 SSFPNLSALDLSACNISEFPDNLRTQH------QLELLDLSENQIGGRIPSWMWDIGVHT 433
            S   + ++D S   I     N+              + LS N+I               
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG--SP 698

Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493
           +  + LS N +TSI     K  +  + ++  L            +  +  N LT  +   
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT-----------TIDLRFNKLT-SLSDD 746

Query: 494 --FCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYL 550
                L  +  +D+S N  S   P    NS+ L+   +R                     
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ------------------R 787

Query: 551 RLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQ 610
              GN +    P  +T C  L  L +G+N++   + E L    L +LD+  N        
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTPQ-LYILDIADNPNISIDVT 845

Query: 611 TFAKSCVLVSLNLNGNRL 628
           +           L  ++ 
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  255 bits (654), Expect = 3e-72
 Identities = 95/610 (15%), Positives = 195/610 (31%), Gaps = 66/610 (10%)

Query: 128 KISSGFTDQFPSLTLLDL-CSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186
           +  SG  +        +     +  G  P    +N  ++  L L+     G +P +   L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN 246
            +L+ L   +++            +T     +        +        Q+L   DL  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 247 HF-----VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301
                  +  I      ++     +   +N  +  I  +   L +L  +    + F    
Sbjct: 407 AINRNPEMKPIKKDSRISLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 302 PDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLK 361
             +             Y +   +   S   L +LT++ L        +       L  L+
Sbjct: 465 IAVDWEDANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQ 518

Query: 362 VLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGR 421
            L+++            N       +      + +   D+  T  ++++  +  N +   
Sbjct: 519 SLNIAC-----------N----RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE- 562

Query: 422 IPSWMWDIGVHTLIELDLSRNFLTSIDHLP-WKNLEYLHLDSNSLQG---SLPDLPPHMV 477
            P+      +  L  LD   N +  ++       L  L LD N ++            + 
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 478 SFSISNNSLTGEIPS--SFCNLSSIQYLDLSNNSLSGQIPQCLGN------STLETLDLR 529
               S+N L   IP+  +  ++  +  +D S N +  +      +          T+ L 
Sbjct: 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLE-------GPLPPSLTNCVKLQFLDVGNNNLS 582
            N  Q    +  A G  ++ + LS N +         P   +  N   L  +D+  N L+
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 583 GQIPECLGNST---LQVLDMRMNNFSGSLPQTFAKSCVLVSLNL------NGNRLKGPLP 633
             + +    +T   L  +D+  N FS S P     S  L +  +       GNR+    P
Sbjct: 742 S-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLR 693
             +  C  L  L +G+N I       L    +L +L +  N       D  +  P+ +  
Sbjct: 800 TGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNIS--IDVTSVCPYIEAG 854

Query: 694 IMDCSHNQLT 703
           +    +++  
Sbjct: 855 MYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  229 bits (586), Expect = 3e-63
 Identities = 98/716 (13%), Positives = 200/716 (27%), Gaps = 147/716 (20%)

Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
           LD  +  +      +  +++      +  ++ +         N  ++  L L      G+
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNW--NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           +P ++G  +T+L  L   ++S +                +   +           +   +
Sbjct: 339 VPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322
           L   DL  +  + +                          D   +L       L     I
Sbjct: 398 LNLSDLLQDAINRN------------------PEMKPIKKDSRISLKDTQIGNL--TNRI 437

Query: 323 GSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF 382
             I  +I  L  L  IY + S F+      D+    +       N  LS S       + 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS-------NL 490

Query: 383 PNLSALDLSACN-ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
            +L+ ++L  C  +++ PD L    +L+ L+++ N+                        
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD------------WT 538

Query: 442 NFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQ 501
                 D  P   ++  ++  N+L+      P                  +S   +  + 
Sbjct: 539 RLADDEDTGP--KIQIFYMGYNNLEE----FPA----------------SASLQKMVKLG 576

Query: 502 YLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG-P 560
            LD  +N +   +     N  L  L L  N  +       A   ++  L  S N L+  P
Sbjct: 577 LLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPECLGN------STLQVLDMRMNNFSGSLPQTFAK 614
              +  +   +  +D   N +  +      +           + +  N       + FA 
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 615 SCVLVSLNLNGNRLK-------GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667
              + ++ L+ N +         P   +  N   L  +D+  N++               
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS------------- 742

Query: 668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV 727
                       + D       P L  MD S+N  +                        
Sbjct: 743 ------------LSDDFRATTLPYLSNMDVSYNCFSS----------------------- 767

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSL 787
                P                +    +        D   NR  R+ P  +    SL  L
Sbjct: 768 ----FP------TQPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 788 NISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            I  N++   +   L    +L  LD++ N       T +       +  L  ++ +
Sbjct: 812 QIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  153 bits (387), Expect = 3e-38
 Identities = 64/452 (14%), Positives = 128/452 (28%), Gaps = 81/452 (17%)

Query: 423 PSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482
            +W +  G        L+ NF   +D   W +   + LD+N            +   S++
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDM--WGDQPGVDLDNNG----------RVTGLSLA 331

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC-LGNSTLETLDLRMNNFQGSIPQTN 541
                G +P +   L+ ++ L    +S +           T +  + R +  +    +  
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 542 AKG-CKLTYLRLSGNHLE-----GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STL 594
                +L    L  + +       P+       +K   +    N ++  I + +   + L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKL 450

Query: 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
           Q++    + F+                N +  +       S  N + L  +++ N     
Sbjct: 451 QIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 655 TFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP-------KLRIMDCSHNQLTGVLP 707
             P +L  L ELQ L +  NR                      K++I    +N L     
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 708 LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS 767
              L+                                            +     +D   
Sbjct: 566 SASLQK-------------------------------------------MVKLGLLDCVH 582

Query: 768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP--TQ 825
           N+  R +    G    L  L + +N +            ++E L  S NKL   IP    
Sbjct: 583 NKV-RHLEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFN 639

Query: 826 LASLNYLSVLNLSNNQLEGPIPGGPQFNTFGN 857
             S+  +  ++ S N++               
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 4e-22
 Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 22/291 (7%)

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633
           LD  N            +S     +  ++ +          +  +  L+L G   KG +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLR 693
            ++     L+VL  G +    +   + D  L   +   R +R               +L 
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD-QRLN 399

Query: 694 IMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQM 753
           + D   + +     +  ++         ++ + +   ++   +N    I   ++      
Sbjct: 400 LSDLLQDAINRNPEMKPIKK--------DSRISLKDTQIGNLTNRITFISKAIQR----- 446

Query: 754 ERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDL 813
              LT    I  +++ F      V       +  N  +         S  NL +L  ++L
Sbjct: 447 ---LTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNS 864
            +     ++P  L  L  L  LN++ N+          +    +D  +G  
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 1/110 (0%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
              +  +D  + R+            +  + N   +         L N   +  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 817 KLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGL 866
              GR+P  +  L  L VL+   +                + S      +
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  228 bits (583), Expect = 8e-68
 Identities = 91/368 (24%), Positives = 140/368 (38%), Gaps = 73/368 (19%)

Query: 27  LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCC--SWDGVTCDSA 84
           LC+     ALLQ K+       ++LS             SW    DCC  +W GV CD+ 
Sbjct: 2   LCNPQDKQALLQIKK--DLGNPTTLS-------------SWLPTTDCCNRTWLGVLCDTD 46

Query: 85  TGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLD 144
           T                           R+  L+L+  +                     
Sbjct: 47  TQ------------------------TYRVNNLDLSGLNLPK------------------ 64

Query: 145 LCSCNFTGSIPPSLGNNITQLAYLDLS-INSFIGHIPSSFSNLHQLRHLDLQSNNFVGKI 203
                    IP SL N +  L +L +  IN+ +G IP + + L QL +L +   N  G I
Sbjct: 65  ------PYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL 263
           P  L   I  L  LD S N+ SG +P S S+L  L  +  D N   G IP S G+     
Sbjct: 118 PDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
             + +S N  +G IP +F+NL  L +++L  N   G    +F +      + LA N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
            +   +    NL  + L  +   G++      +LK L  L++S  +L    ++    +  
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNL--CGEIPQGGNLQ 291

Query: 384 NLSALDLS 391
                  +
Sbjct: 292 RFDVSAYA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (515), Expect = 2e-58
 Identities = 78/332 (23%), Positives = 126/332 (37%), Gaps = 64/332 (19%)

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE--IPASLGNNITQLAYLDLSS-NGF 273
            D  + ++ G +  + +   ++  LDL   +      IP+SL N +  L +L +   N  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNL 89

Query: 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL 333
            G IP + + L QL +L + + N  G IPD  + +  L  L  +YN L G++P SI  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 334 NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC 393
           NL  I    +  SG++                               S+ + S L     
Sbjct: 150 NLVGITFDGNRISGAIP-----------------------------DSYGSFSKL----- 175

Query: 394 NISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT-----SID 448
                            + +S N++ G+IP          L  +DLSRN L         
Sbjct: 176 --------------FTSMTISRNRLTGKIPP---TFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 449 HLPWKNLEYLHLDSNSLQGSLPDL--PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
               KN + +HL  NSL   L  +    ++    + NN + G +P     L  +  L++S
Sbjct: 219 SD--KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIP 538
            N+L G+IPQ       +      N      P
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (513), Expect = 4e-58
 Identities = 87/405 (21%), Positives = 134/405 (33%), Gaps = 127/405 (31%)

Query: 478 SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ--IPQCLGN-STLETLDLR-MNNF 533
           +    N +  G +  +      +  LDLS  +L     IP  L N   L  L +  +NN 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-S 592
            G IP   AK  +L YL ++  ++ G +P  L+    L  LD   N LSG +P  + +  
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 593 TLQVLDMRMNNFSGSLPQTFAK-SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ 651
            L  +    N  SG++P ++   S +  S+ ++ NRL G +PP+  N             
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------ 197

Query: 652 IDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711
                                                   L  +D S N L G       
Sbjct: 198 ---------------------------------------NLAFVDLSRNMLEGDAS---- 214

Query: 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQ 771
             F     G++ + +                                    I L+ N   
Sbjct: 215 VLF-----GSDKNTQ-----------------------------------KIHLAKNSLA 234

Query: 772 RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 831
             +                           +     L  LDL +N++ G +P  L  L +
Sbjct: 235 FDLG-------------------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 832 LSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCS 876
           L  LN+S N L G IP G     F   +Y+ N  LCG PL  +C+
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  189 bits (482), Expect = 7e-54
 Identities = 88/353 (24%), Positives = 131/353 (37%), Gaps = 84/353 (23%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG--KIPDMFTNLTQLSFLGLA-YNELI 322
            D  +  + G +  + +   ++  L+L   N      IP    NL  L+FL +   N L+
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 323 GSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF 382
           G IP +I +L  L  +Y++ +N SG++                                 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAI--------------------------------- 117

Query: 383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442
                           PD L     L  LD S N + G +P                   
Sbjct: 118 ----------------PDFLSQIKTLVTLDFSYNALSGTLPP------------------ 143

Query: 443 FLTSIDHLPWKNLEYLHLDSNSLQGSLPD----LPPHMVSFSISNNSLTGEIPSSFCNLS 498
              SI  LP  NL  +  D N + G++PD          S +IS N LTG+IP +F NL+
Sbjct: 144 ---SISSLP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 499 SIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQ-TNAKGCKLTYLRLSGNH 556
            + ++DLS N L G      G+    + + L  N+    + +   +K   L  L L  N 
Sbjct: 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNR 255

Query: 557 LEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP 609
           + G LP  LT    L  L+V  NNL G+IP+        V     N      P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (480), Expect = 1e-53
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 29/293 (9%)

Query: 380 SSFPNLSAL-----DLSACNIS---EFPDNLRTQHQLELLDLSENQIGGR--IPSWMWDI 429
               N + L         CN +      D     +++  LDLS   +     IPS + ++
Sbjct: 16  KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 430 GVHTLIELDLS-RNFLT-----SIDHLPWKNLEYLHLDSNSLQGSLPD----LPPHMVSF 479
               L  L +   N L      +I  L    L YL++   ++ G++PD    +   +V+ 
Sbjct: 76  --PYLNFLYIGGINNLVGPIPPAIAKL--TQLHYLYITHTNVSGAIPDFLSQIK-TLVTL 130

Query: 480 SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST--LETLDLRMNNFQGSI 537
             S N+L+G +P S  +L ++  +    N +SG IP   G+ +    ++ +  N   G I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 538 PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVL 597
           P T A    L ++ LS N LEG       +    Q + +  N+L+  + +   +  L  L
Sbjct: 191 PPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249

Query: 598 DMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650
           D+R N   G+LPQ   +   L SLN++ N L G +P    N Q  +V    NN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  230 bits (589), Expect = 9e-64
 Identities = 120/551 (21%), Positives = 197/551 (35%), Gaps = 47/551 (8%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L    +L L+FN      +++        L LL+L S     +I      N+  L  LDL
Sbjct: 23  LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNF-VGKIPASLGNNITQLAYLDLSSNSFSG-HI 228
             +      P +F  L  L  L L         +      N+  L  LDLS N     ++
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 229 PSSFSNLQQLCYLDLDDNHFVGEIPASLGN-NITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
             SF  L  L  +D   N         L       L++  L++N     +   +      
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 288 L------WLNLEYNNFVGKIPDMFTN------------LTQLSFLGLAYNELIGSIPSSI 329
                   L++  N +   I   F+N               +   G  ++  I     + 
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNT 259

Query: 330 FELL---NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLS 386
           F  L   ++  + LS      S+    F  LK+LKVL+L+   ++      A     NL 
Sbjct: 260 FAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQ 317

Query: 387 ALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT 445
            L+LS   + E   +      ++  +DL +N I   I    +   +  L  LDL  N LT
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFK-FLEKLQTLDLRDNALT 375

Query: 446 SIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG-EIPSSFCNLSSIQYLD 504
           +I  +P  ++  + L  N L  +LP +        +S N L   +I      +  +Q L 
Sbjct: 376 TIHFIP--SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 505 LSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC-----KLTYLRLSGNHL 557
           L+ N  S          N +LE L L  N  Q +               L  L L+ N+L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCV 617
               P   ++   L+ L + +N L+  +      + L++LD+  N      P  F     
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVS--- 548

Query: 618 LVSLNLNGNRL 628
           L  L++  N+ 
Sbjct: 549 LSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  221 bits (565), Expect = 1e-60
 Identities = 129/603 (21%), Positives = 204/603 (33%), Gaps = 68/603 (11%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP-SSFSNLHQLRHLDLQSN 197
              +     CN T  +P  L         L LS N  I  +  SSF  L QL+ L+L S 
Sbjct: 5   DGRIAFYRFCNLT-QVPQVL----NTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQ 58

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF-VGEIPASL 256
                I      N+  L  LDL S+      P +F  L  L  L L         +    
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 257 GNNITQLAYLDLSSNGFSG-HIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ--LSF 313
             N+  L  LDLS N     ++  SF  L  L  ++   N            L    LSF
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 314 LGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSV 372
             LA N L   +     + +N    + L   + SG+    D     +  +      SL +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 373 STKLTANSSFPNLSALDLSACNISEFPDNL---RTQHQLELLDLSENQIGGRIPSWMWDI 429
           +          ++        NI +   N      +  +  LDLS   +   + S +++ 
Sbjct: 239 A---------HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFE- 287

Query: 430 GVHTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSNSLQ----GSLPDLPPHMVSFSIS 482
            +  L  L+L+ N +  I         NL+ L+L  N L      +   L P +    + 
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQ 346

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542
            N +      +F  L  +Q LDL +N+L+          ++  + L  N    ++P+ N 
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKIN- 400

Query: 543 KGCKLTYLRLSGNHLEG-PLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDM 599
                  + LS N LE   +   L     LQ L +  N  S    +     N +L+ L +
Sbjct: 401 --LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 600 RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW 659
             N    +                                 +L+VL + +N ++   P  
Sbjct: 459 GENMLQLAWETELC-------------------WDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 660 LDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMH 719
              L  L+ L L SNR    +           L I+D S NQL    P  ++      + 
Sbjct: 500 FSHLTALRGLSLNSNR----LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555

Query: 720 GNN 722
            N 
Sbjct: 556 HNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 1e-32
 Identities = 75/403 (18%), Positives = 127/403 (31%), Gaps = 72/403 (17%)

Query: 468 SLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ--CLGNSTLET 525
            +P +        +S N +     SSF  L  +Q L+L +      I +        L  
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77

Query: 526 LDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPPS--LTNCVKLQFLDVGNNNLS 582
           LDL  +     +     +G   L  LRL    L   +       N   L  LD+  N + 
Sbjct: 78  LDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 583 G-QIPECLGNST-LQVLDMRMNNFSGSLPQTFA--KSCVLVSLNLNGNRLKGPLPPSLVN 638
              +    G    L+ +D   N             +   L   +L  N L   +      
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 639 CQ------YLEVLDVGNNQI------------DDTFPYWLDVLLELQVLILRSNRFWGPI 680
           C        LE+LDV  N                +  + L +   +       +    P 
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
            +T   +    +R +D SH  +  +                                   
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNS--------------------------------- 283

Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
            +F T+K  DL+          ++L+ N+  +   E    L++L+ LN+S+N L     S
Sbjct: 284 RVFETLK--DLK---------VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           +   L ++  +DL  N +A         L  L  L+L +N L 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 2e-30
 Identities = 83/457 (18%), Positives = 153/457 (33%), Gaps = 58/457 (12%)

Query: 66  SWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFN 125
            W  D      + ++   A   ++   +  +    +   +        L + +       
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS------- 267

Query: 126 GSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFS 184
                         +  LDL       S+   +   +  L  L+L+ N  I  I   +F 
Sbjct: 268 --------------VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNK-INKIADEAFY 311

Query: 185 NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLD 244
            L  L+ L+L S N +G++ +S    + ++AY+DL  N  +     +F  L++L  LDL 
Sbjct: 312 GLDNLQVLNL-SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 245 DNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPD 303
           DN           + I  +  + LS N        + +       ++L  N      I  
Sbjct: 371 DNALTTI------HFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILY 420

Query: 304 MFTNLTQLSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSG----SVELYDFAKLK 358
               +  L  L L  N               +L +++L  +         +    F  L 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
           +L+VL L++  L+        S    L  L L++  ++    N      LE+LD+S NQ+
Sbjct: 481 HLQVLYLNHNYLNSLPPGVF-SHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQL 538

Query: 419 GGRIPSWMWDIGVHTLIELDLSRN-FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMV 477
               P         +L  LD++ N F+   +   + N        N    ++   P  + 
Sbjct: 539 LAPNPDVF-----VSLSVLDITHNKFICECELSTFINWL------NHTNVTIAGPPADIY 587

Query: 478 SF---SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
                S S  SL             ++ L  S   + 
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVC 624

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCI-PSSLRNLTELESLDL 813
           ++L T   + LS N  +         L  L+ L +        I   + RNL  L  LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQF 852
            S+K+    P     L +L  L L    L   +     F
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  217 bits (555), Expect = 3e-61
 Identities = 104/536 (19%), Positives = 170/536 (31%), Gaps = 50/536 (9%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
             S   LDL        +      +  +L  LDLS          ++ +L  L  L L  
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
           N     +     + ++ L  L     + +        +L+ L  L++  N          
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------- 137

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF--- 313
                            S  +P  FSNL  L  L+L  N            L Q+     
Sbjct: 138 -----------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 314 -LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSV 372
            L L+ N  +  I    F+ + L ++ L  +  S +V       L  L+V  L       
Sbjct: 181 SLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 373 STKLTA--NSSFPNLSALDLSACNIS-------EFPDNLRTQHQLELLDLSENQIGGRIP 423
              L     S+   L  L +    ++       +  D       +    L    I  R+ 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVK 298

Query: 424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP-PHMVSFSIS 482
            + ++ G      L+L          L  K+L+ L   SN    +  ++  P +    +S
Sbjct: 299 DFSYNFG---WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 483 NNSLT--GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQT 540
            N L+  G    S    +S++YLDLS N +       LG   LE LD + +N +     +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 541 NAKGC-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVL 597
                  L YL +S  H              L+ L +  N+        +      L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 598 DMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           D+         P  F     L  LN+  N+LK            L+ + +  N  D
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  196 bits (499), Expect = 1e-53
 Identities = 110/526 (20%), Positives = 186/526 (35%), Gaps = 54/526 (10%)

Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
            + S F  P L+ L+L+  +     I  G       L+ L L       S+     + ++
Sbjct: 44  GSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 100

Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
            L  L     +          +L  L+ L++  N           +N+T L +LDLSSN 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 224 FSGHIPSSFSNLQQL----CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
                 +    L Q+      LDL  N     I       I +L  L L +N  S ++  
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218

Query: 280 -SFSNLQQLLWLNLEY------NNFVGKIPDMFTNLTQLSF--LGLAYNELIGSIPSSIF 330
                L  L    L         N           L  L+     LAY +        +F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 331 E-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALD 389
             L N++   L         +       ++L++++                   +L  L 
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLT 331

Query: 390 LSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH 449
            ++        +      LE LDLS N +  +      D G  +L  LDLS N + ++  
Sbjct: 332 FTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 450 --LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSN 507
             L  + LE+L    ++L+  + +                    S F +L ++ YLD+S+
Sbjct: 391 NFLGLEQLEHLDFQHSNLK-QMSE-------------------FSVFLSLRNLIYLDISH 430

Query: 508 NSLSGQIPQCL-GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPPSL 565
                       G S+LE L +  N+FQ +           LT+L LS   LE   P + 
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 566 TNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLP 609
            +   LQ L++ +N L   +P+ +    ++LQ + +  N +  S P
Sbjct: 491 NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 4e-49
 Identities = 120/658 (18%), Positives = 202/658 (30%), Gaps = 148/658 (22%)

Query: 193 DLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI 252
                NF  KIP +L  +      LDLS N        SF +  +L  LDL        I
Sbjct: 13  QCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTI 67

Query: 253 PASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS 312
                 +++ L+ L L+ N        +FS L  L  L     N          +L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 313 FLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS 371
            L +A+N +        F  L NL  + LS +    S+   D   L  + +L+LS     
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS----- 181

Query: 372 VSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGV 431
                           LDLS   ++        + +L  L L  N     +       G+
Sbjct: 182 ----------------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GL 224

Query: 432 HTLIELDLSRNF------LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNS 485
             L    L          L   D    + L  L ++   L                  + 
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA---------------YLDY 269

Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC 545
              +I   F  L+++    L + ++  ++     N   + L+L +N   G  P    K  
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLEL-VNCKFGQFPTLKLK-- 325

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFS 605
            L  L  + N        S  +   L+FLD+  N LS                     F 
Sbjct: 326 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLS---------------------FK 362

Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
           G   Q+   +  L  L+L+ N +   +  + +  + LE LD                   
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD------------------- 402

Query: 666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725
                 + +     + +    +    L  +D SH              F  +        
Sbjct: 403 -----FQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSS------ 446

Query: 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKI-PEVVGKLNSL 784
                                    L+          + ++ N FQ    P++  +L +L
Sbjct: 447 -------------------------LE---------VLKMAGNSFQENFLPDIFTELRNL 472

Query: 785 KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
             L++S   L    P++  +L+ L+ L+++SN+L          L  L  + L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  179 bits (457), Expect = 4e-48
 Identities = 110/605 (18%), Positives = 193/605 (31%), Gaps = 90/605 (14%)

Query: 218 DLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
                +F   IP +   + +    LDL  N     + +    +  +L  LDLS       
Sbjct: 13  QCMELNFY-KIPDNLPFSTK---NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
              ++ +L  L  L L  N         F+ L+ L  L      L       I  L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSA----LDLSA 392
           E+ ++ +          F+ L NL+ L LS+  +      T       +      LDLS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSL 186

Query: 393 CNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF------LTS 446
             ++        + +L  L L  N     +       G+  L    L          L  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEK 245

Query: 447 IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
            D    + L  L ++   L                  +    +I   F  L+++    L 
Sbjct: 246 FDKSALEGLCNLTIEEFRLA---------------YLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT 566
           + ++  ++     N   + L+L +N   G  P    K   L  L  + N        S  
Sbjct: 291 SVTIE-RVKDFSYNFGWQHLEL-VNCKFGQFPTLKLK--SLKRLTFTSNKGGN--AFSEV 344

Query: 567 NCVKLQFLDVGNNNLSGQ-IPEC--LGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNL 623
           +   L+FLD+  N LS +        G ++L+ LD+  N    ++   F     L  L+ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 624 NGNRLKGPLPPS-LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGD 682
             + LK     S  ++ + L  LD+ +      F    + L  L+VL +  N F      
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-L 462

Query: 683 TKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                    L  +D S  QL  + P                                 + 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSP---------------------------------TA 489

Query: 743 FLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL 802
           F ++    LQ          ++++SN+ +     +  +L SL+ + +  N    C    +
Sbjct: 490 FNSLSS--LQ---------VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD-CSCPRI 537

Query: 803 RNLTE 807
             L+ 
Sbjct: 538 DYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (409), Expect = 7e-42
 Identities = 113/602 (18%), Positives = 189/602 (31%), Gaps = 148/602 (24%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           +IP +L  +      LDLS N        SF +  +L  L+L            + +L+ 
Sbjct: 21  KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
           LS L L  N +  S+    F  L +L ++    +N + S+E +    LK LK L++++  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWD 428
           +         S+  NL  LDLS+  I       LR  HQ+ LL+LS              
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-------------- 181

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWK--NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSL 486
                   LDLS N +  I    +K   L  L L +N    ++                 
Sbjct: 182 --------LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM---------------- 217

Query: 487 TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK 546
                +    L+ ++   L       +                  N +          C 
Sbjct: 218 ----KTCIQGLAGLEVHRLVLGEFRNE-----------------GNLEKFDKSALEGLCN 256

Query: 547 LTYLRLSGNHLEG---PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
           LT       +L+     +         +    + +  +  ++ +   N   Q L++ +N 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLEL-VNC 314

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
             G  P    KS  L  L    N+       S V+   LE LD+  N +           
Sbjct: 315 KFGQFPTLKLKS--LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGL----------- 359

Query: 664 LELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNN 723
                    S   +G             L+ +D S N +  +                  
Sbjct: 360 ---SFKGCCSQSDFGT----------TSLKYLDLSFNGVITM------------------ 388

Query: 724 SVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV-GKLN 782
                            S FL ++ ++            +D   +  ++     V   L 
Sbjct: 389 ----------------SSNFLGLEQLE-----------HLDFQHSNLKQMSEFSVFLSLR 421

Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQ 841
           +L  L+ISH +           L+ LE L ++ N             L  L+ L+LS  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 842 LE 843
           LE
Sbjct: 482 LE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  156 bits (396), Expect = 3e-40
 Identities = 91/492 (18%), Positives = 162/492 (32%), Gaps = 60/492 (12%)

Query: 383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442
           PN++       N  + PDNL      + LDLS N +   + S+ +      L  LDLSR 
Sbjct: 8   PNITY-QCMELNFYKIPDNLPFS--TKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRC 62

Query: 443 FLTSIDH---LPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLTGEIPSSFCN 496
            + +I+        +L  L L  N +Q            +        +L         +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 497 LSSIQYLDLSNNSL-SGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTY----L 550
           L +++ L++++N + S ++P+   N T LE LDL  N  Q           ++      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 551 RLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE--CLGNSTLQVLD------MRMN 602
            LS N +   + P     ++L  L + NN  S  + +    G + L+V            
Sbjct: 183 DLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKG---PLPPSLVNCQYLEVLDVGNNQIDDTFPY- 658
           N            C L         L      +         +    + +  I+    + 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 659 WLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMM 718
           +      L+++  +  +F          +    L+ +  + N+         L S + + 
Sbjct: 302 YNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 719 HGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV 778
              N                     L+ KG   Q +   T+   +DLS N     +    
Sbjct: 354 LSRNG--------------------LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 779 GKLNSLKSLNISHNNLTGCIPSS-LRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837
             L  L+ L+  H+NL      S   +L  L  LD+S              L+ L VL +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 838 SNNQLEGPIPGG 849
           + N  +      
Sbjct: 453 AGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (315), Expect = 6e-30
 Identities = 63/229 (27%), Positives = 91/229 (39%), Gaps = 3/229 (1%)

Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF-PSLTLLDLCSCNFTG-SIPPSLGNN 161
            N      P L+  +L    F  +K  + F++   PSL  LDL     +           
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS 221
            T L YLDLS N  +  + S+F  L QL HLD Q +N       S+  ++  L YLD+S 
Sbjct: 372 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSF 281
                     F+ L  L  L +  N F       +   +  L +LDLS        P++F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 282 SNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
           ++L  L  LN+  N        +F  LT L  + L  N    S P   +
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 1e-28
 Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 18/269 (6%)

Query: 92  DLSCSWLHGN-IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           ++S   L    I       +    + L L    F         T +  SL  L   + N 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-----TLKLKSLKRLTF-TSNK 336

Query: 151 TGSIPPSLGNNITQLAYLDLSIN--SFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG 208
            G+       ++  L +LDLS N  SF G    S      L++LDL  N  +  + ++  
Sbjct: 337 GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 209 NNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267
             + QL +LD   ++       S F +L+ L YLD+   H        + N ++ L  L 
Sbjct: 394 G-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 451

Query: 268 LSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
           ++ N F  +     F+ L+ L +L+L         P  F +L+ L  L +A N+L  S+P
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510

Query: 327 SSIFELL-NLTEIYLSFSNFSGSVELYDF 354
             IF+ L +L +I+L  + +  S    D+
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 1e-10
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            +DLS    Q         L+ L +L ++ N +      +   L+ L+ L      LA  
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGN 857
               +  L  L  LN+++N ++        F+   N
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  203 bits (519), Expect = 2e-56
 Identities = 90/517 (17%), Positives = 172/517 (33%), Gaps = 57/517 (11%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP-SSFSNLHQLRHLDLQ 195
             ++  LDL     T  I          L  L L  +  I  I   +F +L  L HLDL 
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLS 82

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
            N+    + +S    ++ L YL+L  N +    + S F NL  L  L + +     EI  
Sbjct: 83  DNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                +T L  L++ +     +   S  +++ +  L L  +     +      L+ + +L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYL------SFSNFSGSVELYDFAKLKNLKVLSLSNI 368
            L    L     S +      + +          ++ S +  L     +  L  +   + 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 369 SLSVSTKLTANSS----------FPNLSALDLSACNISEFPDNLRTQ-HQLELLDLSENQ 417
           +L+       + S             +  L +    +      + +   +++ + +  ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 418 IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP------WKNLEYLHLDSNSLQGSLPD 471
           +   +P       + +L  LDLS N +             W +L+ L L  N L+ S+  
Sbjct: 322 V-FLVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQK 378

Query: 472 LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMN 531
                                    L ++  LD+S N+       C     +  L+L   
Sbjct: 379 ------------------TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

Query: 532 NFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN 591
             +  +     +   L  L +S N+L+      L     LQ L +  N L   +P+    
Sbjct: 421 GIR-VVKTCIPQ--TLEVLDVSNNNLDS-FSLFLPR---LQELYISRNKLK-TLPDASLF 472

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
             L V+ +  N         F +   L  + L+ N  
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  169 bits (429), Expect = 1e-44
 Identities = 77/430 (17%), Positives = 145/430 (33%), Gaps = 22/430 (5%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  L+ LNL  N +    ++S F     +L  L + +      I       +T L  L++
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
              S   +   S  ++  + HL L   +    +     + ++ + YL+L   + +    S
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWL 290
                +    +          +     N + +L    L  +     +      L  L   
Sbjct: 215 PLPVDEVSSPMKKLAFR-GSVLTDESFNELLKLLRYILELS----EVEFDDCTLNGLGDF 269

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
           N   ++ V ++         +  L +    L   + +    L  +  I +  S     V 
Sbjct: 270 NPSESDVVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326

Query: 351 LYDFAKLKNLKVLSLSN--ISLSVSTKLTANSSFPNLSALDLSACNISEFPDN---LRTQ 405
                 LK+L+ L LS   +            ++P+L  L LS  ++         L T 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 406 HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSL 465
             L  LD+S N       S  W      +  L+LS   +  +     + LE L + +N+L
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQW---PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLE 524
             S     P +    IS N L   +P +      +  + +S N L           ++L+
Sbjct: 444 D-SFSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 525 TLDLRMNNFQ 534
            + L  N + 
Sbjct: 501 KIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  168 bits (427), Expect = 2e-44
 Identities = 107/634 (16%), Positives = 188/634 (29%), Gaps = 141/634 (22%)

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
            D +S +F   IP+ L   +     LDLS N  +            L  L L  +     
Sbjct: 10  CDGRSRSFT-SIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NT 64

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQ 310
           I      ++  L +LDLS N  S    S F  L  L +LNL  N +    +  +F NLT 
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
           L  L +   E    I    F  L +L E+ +   +   + +      ++++  L+L    
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSE 183

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
            +            ++  L+L   N++ F  +     ++               S M  +
Sbjct: 184 SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV--------------SSPMKKL 228

Query: 430 GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE 489
                +  D S N L  +       L  +  D  +L G              + +     
Sbjct: 229 AFRGSVLTDESFNELLKLLRYIL-ELSEVEFDDCTLNGLG----------DFNPSESDVV 277

Query: 490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTY 549
                    +I+ L +    L   +                               K+  
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-----------------------KVKR 314

Query: 550 LRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP 609
           + +  + +         +   L+FLD+  N +                 ++ +   G+ P
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE-------------EYLKNSACKGAWP 361

Query: 610 QTFAKSCVLVSLNLNGNRLK--GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667
                   L +L L+ N L+        L+  + L  LD+  N      P       +++
Sbjct: 362 S-------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 668 VLILRSNRFWGPIGDTKTRVP---FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
            L L S             V       L ++D S+N L                      
Sbjct: 414 FLNLSSTGI--------RVVKTCIPQTLEVLDVSNNNLDSF------------------- 446

Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL 784
                           S+FL      LQ          + +S N+ +  +P+       L
Sbjct: 447 ----------------SLFLP----RLQ---------ELYISRNKLKT-LPDAS-LFPVL 475

Query: 785 KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
             + IS N L          LT L+ + L +N  
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (370), Expect = 5e-37
 Identities = 86/520 (16%), Positives = 168/520 (32%), Gaps = 85/520 (16%)

Query: 359 NLKVLSLSNISLSVSTKLTAN--SSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSE 415
            +K L LS   +   T +      +  NL  L L +  I+    +   +   LE LDLS+
Sbjct: 27  AMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW----KNLEYLHLDSNSLQGSLPD 471
           N +     SW     + +L  L+L  N   ++          NL+ L + +      +  
Sbjct: 84  NHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 472 LP----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETL 526
           +       +    I   SL      S  ++  I +L L  +  +  +       S++  L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
           +LR  N               + ++            S    +KL    +  + +     
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE---- 257

Query: 587 ECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646
                +   + D   +           ++  +  L++    L   L       + ++ + 
Sbjct: 258 -FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRF-WGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705
           V N+++      +   L  L+ L L  N      + ++  +  +P L+ +  S N L   
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-- 374

Query: 706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDL 765
                ++    ++    N                           L          ++D+
Sbjct: 375 ----SMQKTGEILLTLKN---------------------------LT---------SLDI 394

Query: 766 SSNRFQRKIPEVVGKLNSLKSLNISHNNLT---GCIPSSLR--------------NLTEL 808
           S N F   +P+       ++ LN+S   +     CIP +L                L  L
Sbjct: 395 SRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRL 453

Query: 809 ESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
           + L +S NKL   +P   +    L V+ +S NQL+    G
Sbjct: 454 QELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 2e-33
 Identities = 78/416 (18%), Positives = 143/416 (34%), Gaps = 36/416 (8%)

Query: 460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ--C 517
             S S       L   M S  +S N +T          +++Q L L ++ ++  I     
Sbjct: 12  GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAF 70

Query: 518 LGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHL-EGPLPPSLTNCVKLQFLD 575
               +LE LDL  N+   S+  +       L YL L GN      +     N   LQ L 
Sbjct: 71  YSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 576 VGNNNLSGQIPE--CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633
           +GN     +I      G ++L  L+++  +      Q+      +  L L+ +     L 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLD---VLLELQVLILRSNRFWGPIGDTKTRVPF- 689
                   +  L++ +  +       L    V   ++ L  R +       +   ++   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 690 ----PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM---RLPGSSNYYESI 742
                ++   DC+ N L G       +    +      ++   ++    L    +   S+
Sbjct: 250 ILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 743 FLTMKGIDL---QMERI-------LTTFATIDLSSNRFQRKI---PEVVGKLNSLKSLNI 789
              +K I +   ++  +       L +   +DLS N    +        G   SL++L +
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 790 SHNNLT--GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           S N+L         L  L  L SLD+S N     +P        +  LNLS+  + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (341), Expect = 3e-33
 Identities = 64/407 (15%), Positives = 134/407 (32%), Gaps = 43/407 (10%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L +        I        L  L +L +           S        +  L L   + 
Sbjct: 128 LRIGNVETFSEIRRID-FAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTL-HLSE 183

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN- 209
           +  +     + ++ + YL+L   +      S          +   +         S    
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 210 --------NITQLAYLDLSSNSFSGHIPSSFSNLQQLC--------YLDLDDNHFVGEIP 253
                    ++++ + D + N      PS    + +L          L +   +      
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDL 302

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM---FTNLTQ 310
           +++ + + ++  + + ++       S   +L+ L +L+L  N  V +             
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 311 LSFLGLAYNEL--IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368
           L  L L+ N L  +      +  L NLT + +S + F            + ++ L+LS+ 
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSST 420

Query: 369 SLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
            + V            L  LD+S  N+  F   L    +L+ L +S N++   +P     
Sbjct: 421 GIRVVK----TCIPQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLK-TLPDAS-- 470

Query: 429 IGVHTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSNSLQGSLPDL 472
                L+ + +SRN L S+         +L+ + L +N    S P +
Sbjct: 471 -LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (266), Expect = 6e-24
 Identities = 50/264 (18%), Positives = 98/264 (37%), Gaps = 18/264 (6%)

Query: 96  SWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIP 155
            +        S L  +  +    L    F      S        +  + + +      +P
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326

Query: 156 PSLGNNITQLAYLDLSINSF---IGHIPSSFSNLHQLRHLDLQSNNFVG-KIPASLGNNI 211
            S   ++  L +LDLS N          +       L+ L L  N+    +    +   +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
             L  LD+S N+F   +P S    +++ +L+L        +   +   +     LD+S+N
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVSNN 441

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE 331
               ++ S    L +L  L +  N     +PD  +    L  + ++ N  + S+P  IF+
Sbjct: 442 ----NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN-QLKSVPDGIFD 494

Query: 332 LL-NLTEIYLSFSNFSGSVELYDF 354
            L +L +I+L  + +  S    D+
Sbjct: 495 RLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 3e-16
 Identities = 52/358 (14%), Positives = 111/358 (31%), Gaps = 59/358 (16%)

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLS 553
            +  +    D  + S +  IP  L  + +++LDL  N     I   + + C  L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFSG-SLPQT 611
            + +      +  +   L+ LD+ +N+LS       G  + L+ L++  N +    +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 612 FAKSCVLVSLNL-NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLI 670
           F     L +L + N                 L  L++    + +     L  + ++  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 671 LRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730
           L  +                 +R ++     L                            
Sbjct: 179 LHLSES--AFLLEIFADILSSVRYLELRDTNLA--------------------------- 209

Query: 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNIS 790
           R   S    + +   MK +  +   +       D S N    K+   + +L+ ++  + +
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLT------DESFNEL-LKLLRYILELSEVEFDDCT 262

Query: 791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
            N L    PS    ++EL  ++  +                +  L++    L   +  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVT----------------IRRLHIPQFYLFYDLST 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG- 820
            + L S+R      +    L SL+ L++S N+L+    S    L+ L+ L+L  N     
Sbjct: 54  VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

Query: 821 RIPTQLASLNYLSVLNLSNNQLEGPIPGG 849
            + +   +L  L  L + N +    I   
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  189 bits (483), Expect = 2e-52
 Identities = 101/522 (19%), Positives = 193/522 (36%), Gaps = 73/522 (13%)

Query: 154 IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQ 213
           I P   +N T L       ++ +  +P    N+          + +    P   G    +
Sbjct: 3   INPRNVSN-TFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-RE 59

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273
           +A   L                +Q   L+L++      +P    +    L  L  S N  
Sbjct: 60  MAVSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPH----LESLVASCNSL 103

Query: 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL 333
           +  +P    +L+ LL  N         + D+   L  L    ++ N+L   +P  +    
Sbjct: 104 T-ELPELPQSLKSLLVDNNNLK----ALSDLPPLLEYLG---VSNNQLE-KLP-ELQNSS 153

Query: 334 NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC 393
            L  I +  ++     +L       +L+ ++  N  L    +L    + P L+A+     
Sbjct: 154 FLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNN 205

Query: 394 NISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453
           ++ + PD       LE +    N +   +P       +  L  +    N L ++  LP  
Sbjct: 206 SLKKLPDLP---LSLESIVAGNNIL-EELPELQ---NLPFLTTIYADNNLLKTLPDLP-P 257

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           +LE L++  N L   LP+LP  +    +S N  +  +     NL    YL+ S+N +   
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFS-GLSELPPNL---YYLNASSNEIR-S 311

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573
           +     +  LE L++  N     +P       +L  L  S NHL   +P    N   L+ 
Sbjct: 312 LCDLPPS--LEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE-VPELPQN---LKQ 361

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633
           L V  N L  + P+   +  ++ L  RMN+    +P+       L  L++  N L+   P
Sbjct: 362 LHVEYNPLR-EFPDIPES--VEDL--RMNSHLAEVPELPQN---LKQLHVETNPLRE-FP 412

Query: 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
               +   +E L + + ++ D + +  +   +L+  +   + 
Sbjct: 413 DIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  170 bits (433), Expect = 8e-46
 Identities = 103/546 (18%), Positives = 195/546 (35%), Gaps = 103/546 (18%)

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE 337
           P + SN   L       +N   ++P    N+   +    A++E   + P    E   +  
Sbjct: 5   PRNVSNTF-LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE 397
             L                 +    L L+N+ LS     +     P+L +L  S  +++E
Sbjct: 63  SRLRDC------------LDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTE 105

Query: 398 FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLE 456
            P+  ++   L + + +   +    P          L  L +S N L  +  L     L+
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL---------LEYLGVSNNQLEKLPELQNSSFLK 156

Query: 457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
            + +D+NSL+  LPDLPP +   +  NN L  E+P    NL  +  +   NNSL  ++P 
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPD 212

Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLSGNHLEGPLPPSLTNCVKLQFLD 575
              +  LE++    N  +  +P+   +    LT +    N L+  LP    +   L+ L+
Sbjct: 213 LPLS--LESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLKT-LPDLPPS---LEALN 263

Query: 576 VGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
           V +N L+  +PE   + + L V +   +  S   P        L  LN + N ++  L  
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRS-LCD 314

Query: 635 SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP--FPKL 692
              +   LE L+V NN++    P    +   L+ LI   N            VP     L
Sbjct: 315 LPPS---LEELNVSNNKLI-ELP---ALPPRLERLIASFNHL--------AEVPELPQNL 359

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQ 752
           + +   +N L    P                      +     +++   +    + +   
Sbjct: 360 KQLHVEYNPLR-EFP-----------------DIPESVEDLRMNSHLAEVPELPQNL--- 398

Query: 753 MERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLD 812
                     + + +N  +   P++     S++ L ++   +      +     +LE   
Sbjct: 399 --------KQLHVETNPLRE-FPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446

Query: 813 LSSNKL 818
              +  
Sbjct: 447 FEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  170 bits (432), Expect = 1e-45
 Identities = 93/488 (19%), Positives = 176/488 (36%), Gaps = 73/488 (14%)

Query: 106 SSLFFLPRLRKLNLAFNDFNGS-----------KISSGFTDQFPSLTLLDLCSCNFTGSI 154
                +    +   A++++  +            +S            L+L +   + S+
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86

Query: 155 PPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214
           P    +    L  L  S NS +  +P    +L  L   +            +L +    L
Sbjct: 87  PELPPH----LESLVASCNS-LTELPELPQSLKSLLVDNNNLK--------ALSDLPPLL 133

Query: 215 AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS 274
            YL +S+N     +P    N   L  +D+D+N    ++P    +    L ++   +N   
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQLE 186

Query: 275 GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN 334
             +P    NL  L  +  + N+   K+PD+  +L  +       N L       +  L  
Sbjct: 187 -ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL--EELPELQNLPF 238

Query: 335 LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACN 394
           LT IY   +      +L       +L+ L++ +  L   T L       +L+ LD+S   
Sbjct: 239 LTTIYADNNLLKTLPDL-----PPSLEALNVRDNYL---TDLP--ELPQSLTFLDVSENI 288

Query: 395 ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKN 454
            S   +       L  L+ S N+I   +          +L EL++S N L  +  LP   
Sbjct: 289 FSGLSELPP---NLYYLNASSNEIR-SLCDLP-----PSLEELNVSNNKLIELPALP-PR 338

Query: 455 LEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQI 514
           LE L    N L   +P+LP ++    +  N L  E P    ++     L ++++     +
Sbjct: 339 LERLIASFNHLA-EVPELPQNLKQLHVEYNPLR-EFPDIPESVED---LRMNSHLAE--V 391

Query: 515 PQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFL 574
           P+   N  L+ L +  N  +   P        +  LR++   +  P   +     KL+  
Sbjct: 392 PELPQN--LKQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDD 445

Query: 575 DVGNNNLS 582
              +++  
Sbjct: 446 VFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  150 bits (381), Expect = 5e-39
 Identities = 77/460 (16%), Positives = 144/460 (31%), Gaps = 84/460 (18%)

Query: 91  LDLSCSWLHGNIPSNS------SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLD 144
              + S    N P  +      ++  L           + N   +SS   +  P L  L 
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHLESLV 97

Query: 145 LCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS---------------SFSNLHQL 189
             SCN    +P    + +  L   + ++ +     P                   N   L
Sbjct: 98  A-SCNSLTELPELPQS-LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155

Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
           + +D+ +N+        L +    L ++   +N     +P    NL  L  +  D+N   
Sbjct: 156 KIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK 208

Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
            ++P    +    L  +   +N           NL  L  +  + N     +PD+  +L 
Sbjct: 209 -KLPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE 260

Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
            L+       +L    P     L  L      FS  S            NL  L+ S+  
Sbjct: 261 ALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSEL--------PPNLYYLNASSNE 308

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
           +            P+L  L++S   + E P       +LE L  S N +   +P      
Sbjct: 309 IRSLC-----DLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLA-EVPELPQ-- 357

Query: 430 GVHTLIELDLSRNFLTSIDHLPWK------------------NLEYLHLDSNSLQGSLPD 471
               L +L +  N L     +P                    NL+ LH+++N L+   PD
Sbjct: 358 ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 472 LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           +P  +    +++  +      +      ++     ++   
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (316), Expect = 1e-30
 Identities = 95/468 (20%), Positives = 154/468 (32%), Gaps = 125/468 (26%)

Query: 378 ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIEL 437
            N S   L      + N++E P              + ++     P              
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP----------PGNG 55

Query: 438 DLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNL 497
           +     ++ +     +    L L++  L  SLP+LPPH+ S   S NSLT E+P    +L
Sbjct: 56  EQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSL 113

Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
            S+   + +  +LS   P                               L YL +S N L
Sbjct: 114 KSLLVDNNNLKALSDLPP------------------------------LLEYLGVSNNQL 143

Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCV 617
           E    P L N   L+ +DV NN+L  ++P+   +  L+ +    N     LP+       
Sbjct: 144 EKL--PELQNSSFLKIIDVDNNSLK-KLPDLPPS--LEFIAAGNNQLE-ELPE-LQNLPF 196

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
           L ++  + N LK  LP   ++   LE +  GNN +       L  L  L  +   +N   
Sbjct: 197 LTAIYADNNSLKK-LPDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLL- 249

Query: 678 GPIGDTKTRVP--FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGS 735
                    +P   P L  ++   N LT                                
Sbjct: 250 -------KTLPDLPPSLEALNVRDNYLT-------------------------------- 270

Query: 736 SNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT 795
                            +  +  +   +D+S N F   + E+     +L  LN S N + 
Sbjct: 271 ----------------DLPELPQSLTFLDVSENIFS-GLSEL---PPNLYYLNASSNEIR 310

Query: 796 GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
             +     +L EL   ++S+NKL   +P     L     L  S N L 
Sbjct: 311 S-LCDLPPSLEEL---NVSNNKLI-ELPALPPRL---ERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 91/333 (27%)

Query: 515 PQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFL 574
           P+ + N+ L+      +N    +P         T    + +  E   PP      ++   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 575 DVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
                    ++ +CL       L++     S SLP+       L SL  + N L   LP 
Sbjct: 64  ---------RLRDCLDRQ-AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPE 108

Query: 635 SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP----FP 690
              + + L V +     + D  P        L+ L + +N+          ++P      
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL--------EKLPELQNSS 153

Query: 691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGID 750
            L+I+D  +N L                            +LP                 
Sbjct: 154 FLKIIDVDNNSLK---------------------------KLPDL--------------- 171

Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
                   +   I   +N+ + ++PE+   L  L ++   +N+L   +P    +L   ES
Sbjct: 172 ------PPSLEFIAAGNNQLE-ELPEL-QNLPFLTAIYADNNSLK-KLPDLPLSL---ES 219

Query: 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           +   +N L      +L +L +L+ +   NN L+
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKL-------------NSLKSLNISHNNLTGCIPSSLR 803
           + +      + + ++R  P   G+                   L +++  L+  +P    
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

Query: 804 NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
           +L  L     S N L   +P    SL  L V N +   L    P
Sbjct: 92  HLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 14/83 (16%)

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           I         L+      +NLT  +P    N+        + ++     P        ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 834 V-------------LNLSNNQLE 843
           V             L L+N  L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS 84

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  182 bits (465), Expect = 6e-50
 Identities = 88/471 (18%), Positives = 174/471 (36%), Gaps = 41/471 (8%)

Query: 165 LAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSF 224
           L    ++ ++ I  I  + + L +     L   N    +  +   ++ Q+  L       
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGI 58

Query: 225 SGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNL 284
                     L  L  ++  +N      P     N+T+L  + +++N  +    +  +NL
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITPLK---NLTKLVDILMNNNQIAD--ITPLANL 111

Query: 285 QQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN 344
             L  L L  N      P    NLT L+ L L+ N +  S  S++  L +L ++    + 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQ 166

Query: 345 FSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRT 404
            +   +L   A L  L+ L +S+  +   + ++  +   NL +L  +   IS+    L  
Sbjct: 167 VT---DLKPLANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDIT-PLGI 219

Query: 405 QHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSN 463
              L+ L L+ NQ+   I +      +  L +LDL+ N ++++  L     L  L L +N
Sbjct: 220 LTNLDELSLNGNQLKD-IGTLA---SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275

Query: 464 SLQGSLPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS 521
            +  ++  L     + +  ++ N L     S   NL ++ YL L  N++S   P  + + 
Sbjct: 276 QIS-NISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 522 T-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN 580
           T L+ L    N         N     + +L    N +       L N  ++  L + +  
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLT--NINWLSAGHNQISD--LTPLANLTRITQLGLNDQA 386

Query: 581 LSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
            +        N ++      +       P T +        ++  N     
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  181 bits (462), Expect = 1e-49
 Identities = 110/479 (22%), Positives = 179/479 (37%), Gaps = 40/479 (8%)

Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
                     L   N T ++  +   ++ Q+  L                 L+ L  ++ 
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
            +N      P     N+T+L  + +++N  +    +  +NL  L  L L +N      P 
Sbjct: 76  SNNQLTDITPLK---NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPL 130

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
               N+T L  L+LSSN  S    S+ S L  L  L+   N      P    NLT L  L
Sbjct: 131 K---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERL 182

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST 374
            ++ N++  S  S + +L NL  +  + +  S    L     L NL  LSL+   L    
Sbjct: 183 DISSNKV--SDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQL---K 234

Query: 375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
            +   +S  NL+ LDL+   IS     L    +L  L L  NQI   I       G+  L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISN-ISPL---AGLTAL 289

Query: 435 IELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPS 492
             L+L+ N L  I  +   KNL YL L  N++    P      +      NN ++    S
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VS 347

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
           S  NL++I +L   +N +S  +      + +  L L    +  +     A    ++    
Sbjct: 348 SLANLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKA---NVSIPNT 403

Query: 553 SGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQ 610
             N     + P+ +++       D+  N  S         S    +      FSG++ Q
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  157 bits (399), Expect = 3e-41
 Identities = 100/482 (20%), Positives = 165/482 (34%), Gaps = 63/482 (13%)

Query: 82  DSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLT 141
           D+A    +   L       N+    S   L ++  L           I     +   +LT
Sbjct: 20  DTALAEKMKTVLG----KTNVTDTVSQTDLDQVTTLQADRL--GIKSIDG--VEYLNNLT 71

Query: 142 LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVG 201
            ++  +   T   P     N+T+L  + ++ N       +  +NL  L  L L +N    
Sbjct: 72  QINFSNNQLTDITPLK---NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126

Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
             P     N+T L  L+LSSN+ S    S+ S L  L  L    N      P +   N+T
Sbjct: 127 IDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPLA---NLT 177

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
            L  LD+SSN  S    S  + L  L  L    N      P     LT L  L L  N+L
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

Query: 322 IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSS 381
                 ++  L NLT++ L+ +  S    L   + L  L  L L    +   + ++  + 
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQI---SNISPLAG 285

Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
              L+ L+L+   + +    +     L  L L  N I    P       +  L  L    
Sbjct: 286 LTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPV----SSLTKLQRLFFYN 340

Query: 442 NFLTSIDHL-PWKNLEYLHLDSNSLQGSLPDLP-PHMVSFSISNNSLTGEI--------- 490
           N ++ +  L    N+ +L    N +    P      +    +++ + T            
Sbjct: 341 NKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 491 -------------PSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSI 537
                        P++  +  S    D++ N  S         S   T+      F G++
Sbjct: 401 PNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 538 PQ 539
            Q
Sbjct: 461 TQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 2e-40
 Identities = 100/517 (19%), Positives = 179/517 (34%), Gaps = 62/517 (11%)

Query: 311 LSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISL 370
           L    +  +  I  I  +   L    +  L  +N + +V       L  +  L    + +
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI 58

Query: 371 SVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
                +       NL+ ++ S   +++    L+   +L  + ++ NQI    P       
Sbjct: 59  ---KSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP----LAN 110

Query: 431 VHTLIELDLSRNFLTSIDHLP-WKNLEYLHLDSNSLQG--SLPDLPPHMVSFSISNNSLT 487
           +  L  L L  N +T ID L    NL  L L SN++    +L  L   +   S  N    
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFGNQVTD 169

Query: 488 GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKL 547
                   NL++++ LD+S+N +S  I      + LE+L    N      P        L
Sbjct: 170 ---LKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPLGILT--NL 223

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS 607
             L L+GN L+     +L +   L  LD+ NN +S  +    G + L  L +  N  S  
Sbjct: 224 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNI 280

Query: 608 LPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667
            P     +  L +L LN N+L+      + N + L  L +  N I D  P  +  L +LQ
Sbjct: 281 SPLAGLTA--LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV 727
            L   +N+    + D  +      +  +   HNQ++ + PL  L     +   +      
Sbjct: 335 RLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA---- 386

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKI-PEVVGKLNSLKS 786
                                            +  +   N     I P  +    S   
Sbjct: 387 ---------------------WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 787 LNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
            +I+ N  +          ++  ++   +   +G + 
Sbjct: 426 PDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 7e-39
 Identities = 86/494 (17%), Positives = 151/494 (30%), Gaps = 99/494 (20%)

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL 413
              L       L   ++   T   + +    ++ L      I      +   + L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINF 75

Query: 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDL 472
           S NQ+    P       +  L+++ ++ N +  I  L    NL  L L +N +       
Sbjct: 76  SNNQLTDITPL----KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD----- 126

Query: 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNN 532
                                  NL+++  L+LS+N++S  I    G ++L+ L    N 
Sbjct: 127 ------------------IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQ 166

Query: 533 FQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS 592
                P  N     L  L +S N +       L     L+ L   NN +S  I      +
Sbjct: 167 VTDLKPLANLT--TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD-ITPLGILT 221

Query: 593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
            L  L +  N        T A    L  L+L  N++       L     L  L +G NQI
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQI 277

Query: 653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLE 712
            +  P  L  L  L  L L  N+       +        L  +    N ++ + P+  L 
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISPISN----LKNLTYLTLYFNNISDISPVSSLT 331

Query: 713 SFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQR 772
             +                                               +   +N+   
Sbjct: 332 KLQ----------------------------------------------RLFFYNNKV-- 343

Query: 773 KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 832
                +  L ++  L+  HN ++   P  L NLT +  L L+            A+++  
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 833 SVLNLSNNQLEGPI 846
           + +      L  P 
Sbjct: 402 NTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (379), Expect = 1e-38
 Identities = 94/463 (20%), Positives = 159/463 (34%), Gaps = 79/463 (17%)

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSL 465
           +     L +  +   +        +  +  L   R  + SID + +  NL  ++  +N L
Sbjct: 25  EKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 466 QGSLPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTL 523
              +  L     +V   ++NN +    P    NL+++  L L NN ++  I      + L
Sbjct: 81  T-DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNL 136

Query: 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
             L+L  N        +      L  L       +      L N   L+ LD+ +N +S 
Sbjct: 137 NRLELSSNTISDISALSGLT--SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD 191

Query: 584 QIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLE 643
            I      + L+ L    N  S   P     +  L  L+LNGN+LK     +L +   L 
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDI--GTLASLTNLT 246

Query: 644 VLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
            LD+ NNQI +  P  L  L +L  L L +N+                L  ++ + NQL 
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG----LTALTNLELNENQLE 300

Query: 704 GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATI 763
            + P+  L++                                                 +
Sbjct: 301 DISPISNLKNLT----------------------------------------------YL 314

Query: 764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
            L  N      P  V  L  L+ L   +N ++    SSL NLT +  L    N+++   P
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

Query: 824 TQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGL 866
             LA+L  ++ L L++              +  N   +    L
Sbjct: 371 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (356), Expect = 1e-35
 Identities = 88/415 (21%), Positives = 153/415 (36%), Gaps = 53/415 (12%)

Query: 436 ELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDLP-PHMVSFSISNNSLTGEIPSS 493
                   +  I             L   ++  ++       + +       +       
Sbjct: 6   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SIDG 63

Query: 494 FCNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
              L+++  ++ SNN L+   P  L N T L  + +  N      P  N     LT L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT--NLTGLTL 119

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF 612
             N +       L N   L  L++ +N +S  I    G ++LQ L    N  +   P   
Sbjct: 120 FNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKP--L 173

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
           A    L  L+++ N++       L     LE L   NNQI D  P  L +L  L  L L 
Sbjct: 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 673 SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL 732
            N+    + D  T      L  +D ++NQ++ + PL  L     +  G N         +
Sbjct: 230 GNQ----LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-----I 280

Query: 733 PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHN 792
              +                    LT    ++L+ N+ +   P  +  L +L  L +  N
Sbjct: 281 SPLAG-------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 793 NLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
           N++   P  + +LT+L+ L   +NK++    + LA+L  ++ L+  +NQ+    P
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  163 bits (416), Expect = 1e-44
 Identities = 75/373 (20%), Positives = 139/373 (37%), Gaps = 34/373 (9%)

Query: 163 TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN 222
             LA L   IN          ++L +     LQ  +    +       +  +  L ++  
Sbjct: 3   ATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGE 54

Query: 223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS 282
             +         L  L YL+L+ N      P S   N+ +L  L + +N  +    S+  
Sbjct: 55  KVAS--IQGIEYLTNLEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKIT--DISALQ 107

Query: 283 NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSF 342
           NL  L  L L  +N     P    NLT++  L L  N  + S  S +  +  L  + ++ 
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 343 SNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNL 402
           S       +   A L +L  LSL+   +     ++  +S  +L         I++    +
Sbjct: 165 SKVKD---VTPIANLTDLYSLSLNYNQI---EDISPLASLTSLHYFTAYVNQITDIT-PV 217

Query: 403 RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLD 461
               +L  L +  N+I    P       +  L  L++  N ++ I+ +     L+ L++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLA----NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

Query: 462 SNSLQGSLPDL--PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLG 519
           SN +   +  L     + S  ++NN L  E       L+++  L LS N ++  I     
Sbjct: 274 SNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLAS 331

Query: 520 NSTLETLDLRMNN 532
            S +++ D     
Sbjct: 332 LSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 73/390 (18%), Positives = 142/390 (36%), Gaps = 52/390 (13%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           L       +   P   ++L + +   L+  +    +      L  ++ L +A  + + SI
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VASI 59

Query: 326 PSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
              I  L NL  + L+ +  +    +   + L  L  L +    +   T ++A  +  NL
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKI---TDISALQNLTNL 112

Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT-LIELDLSRNFL 444
             L L+  NIS+    L    ++  L+L  N     +      +   T L  L ++ + +
Sbjct: 113 RELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKV 167

Query: 445 TSIDHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYL 503
             +  +    +L  L L+ N ++                         S   +L+S+ Y 
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDI-----------------------SPLASLTSLHYF 204

Query: 504 DLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP 562
               N ++   P  + N + L +L +  N      P  N    +LT+L +  N +     
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS--QLTWLEIGTNQISDI-- 258

Query: 563 PSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLN 622
            ++ +  KL+ L+VG+N +S  I      S L  L +  N       +       L +L 
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 623 LNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
           L+ N +       L +   ++  D  N  I
Sbjct: 318 LSQNHITDI--RPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (377), Expect = 2e-39
 Identities = 71/390 (18%), Positives = 130/390 (33%), Gaps = 49/390 (12%)

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           L       +   P   ++L +     L        +       +  +  L ++    +  
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS- 58

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
                  L  L +LNL  N      P   +NL +L+ L +  N++  +  S++  L NL 
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS 396
           E+YL+  N S    +   A L  +  L+L        + L+  S+   L+ L ++   + 
Sbjct: 114 ELYLNEDNISD---ISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVK 168

Query: 397 EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNL 455
           +    +     L  L L+ NQI    P       + +L       N +T I  +     L
Sbjct: 169 DVT-PIANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDITPVANMTRL 223

Query: 456 EYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP 515
             L + +N +                          S   NLS + +L++  N +S  I 
Sbjct: 224 NSLKIGNNKITDL-----------------------SPLANLSQLTWLEIGTNQISD-IN 259

Query: 516 QCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLD 575
                + L+ L++  N         N    +L  L L+ N L       +     L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISVLNNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 576 VGNNNLSGQIPECLGNSTLQVLDMRMNNFS 605
           +  N+++  I      S +   D       
Sbjct: 318 LSQNHITD-IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (362), Expect = 2e-37
 Identities = 80/437 (18%), Positives = 144/437 (32%), Gaps = 99/437 (22%)

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSL 469
           L      I    P    D  +   I   L +  +T +      +++  L +    +  S+
Sbjct: 5   LATLPAPINQIFP----DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SI 59

Query: 470 PDL--PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETL 526
             +    ++   +++ N +T   P    NL  +  L +  N ++      L N + L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLREL 115

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
            L  +N     P  N    K+  L L  NH        L+N   L +L V  + +    P
Sbjct: 116 YLNEDNISDISPLANLT--KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 587 ECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646
             + N                L         L SL+LN N+++      L +   L    
Sbjct: 173 --IAN----------------LTD-------LYSLSLNYNQIEDI--SPLASLTSLHYFT 205

Query: 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVL 706
              NQI D  P  +  +  L  L + +N+               +L  ++   NQ++ + 
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN----LSQLTWLEIGTNQISDIN 259

Query: 707 PLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLS 766
            +  L   K                                               +++ 
Sbjct: 260 AVKDLTKLK----------------------------------------------MLNVG 273

Query: 767 SNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQL 826
           SN+       V+  L+ L SL +++N L       +  LT L +L LS N +    P  L
Sbjct: 274 SNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 827 ASLNYLSVLNLSNNQLE 843
           ASL+ +   + +N  ++
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 1e-35
 Identities = 81/381 (21%), Positives = 137/381 (35%), Gaps = 58/381 (15%)

Query: 87  HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
             I   L       ++    +   L  + KL +A      + I     +   +L  L+L 
Sbjct: 23  EGIRAVLQ----KASVTDVVTQEELESITKLVVAGEKV--ASIQG--IEYLTNLEYLNLN 74

Query: 147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPAS 206
               T   P S   N+ +L  L +  N       S+  NL  LR L L  +N     P +
Sbjct: 75  GNQITDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA 129

Query: 207 LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266
              N+T++  L+L +N     + S  SN+  L YL + ++      P +   N+T L  L
Sbjct: 130 ---NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSL 182

Query: 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
            L+ N      P   ++L  L +     N      P    N+T+L+ L +  N++    P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 327 SSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLS 386
                                       A L  L  L +    +   + + A      L 
Sbjct: 239 ---------------------------LANLSQLTWLEIGTNQI---SDINAVKDLTKLK 268

Query: 387 ALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS 446
            L++ +  IS+    L    QL  L L+ NQ+G      +   G+  L  L LS+N +T 
Sbjct: 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITD 325

Query: 447 IDHL-PWKNLEYLHLDSNSLQ 466
           I  L     ++     +  ++
Sbjct: 326 IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L+L+       I   S L  L +L  L +  N    + IS+       +L  L L   N 
Sbjct: 71  LNLN----GNQITDISPLSNLVKLTNLYIGTNKI--TDISAL--QNLTNLRELYLNEDNI 122

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
           +   P +   N+T++  L+L  N  +  + S  SN+  L +L +  +      P +   N
Sbjct: 123 SDISPLA---NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIA---N 175

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS 270
           +T L  L L+ N      P   ++L  L Y     N      P +   N+T+L  L + +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA---NMTRLNSLKIGN 230

Query: 271 NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
           N  +   P   +NL QL WL +  N       +   +LT+L  L +  N++  S  S + 
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLN 284

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDL 390
            L  L  ++L+ +N  G+ ++     L NL  L LS   +   T +   +S   + + D 
Sbjct: 285 NLSQLNSLFLN-NNQLGNEDMEVIGGLTNLTTLFLSQNHI---TDIRPLASLSKMDSADF 340

Query: 391 SACNISE 397
           +   I +
Sbjct: 341 ANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 2e-30
 Identities = 77/415 (18%), Positives = 148/415 (35%), Gaps = 74/415 (17%)

Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
            + L      I++         +     L +  +   +        + ++ +L ++   +
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT----QEELESITKLVVAGEKV 56

Query: 445 TSIDHL-PWKNLEYLHLDSNSLQGSLPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQ 501
            SI  +    NLEYL+L+ N +   +  L     + +  I  N +T    S+  NL++++
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLR 113

Query: 502 YLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP 560
            L L+ +++S   P  L N T + +L+L  N+   S     +    L YL ++ + ++  
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVS 620
               + N   L  L +  N +   I      ++L      +N  +   P   A    L S
Sbjct: 171 --TPIANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680
           L +  N++       L N   L  L++G NQI D     +  L +L++L + SN+    I
Sbjct: 226 LKIGNNKITDL--SPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQ----I 277

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
            D        +L  +  ++NQL         E                            
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDM----EVIGG------------------------ 309

Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT 795
                           LT   T+ LS N      P  +  L+ + S + ++  + 
Sbjct: 310 ----------------LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 5e-29
 Identities = 73/354 (20%), Positives = 128/354 (36%), Gaps = 69/354 (19%)

Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
           +L+      L   S++  + Q     ++  L +                  L YL L+GN
Sbjct: 20  DLAEGIRAVLQKASVTDVVTQE-ELESITKLVVAGEKVASIQGIEYLT--NLEYLNLNGN 76

Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAK 614
            +       L+N VKL  L +G N ++      L N + L+ L +  +N S   P     
Sbjct: 77  QITDI--SPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLT 132

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
              + SLNL  N         L N   L  L V  +++ D  P  +  L +L  L L  N
Sbjct: 133 K--MYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPG 734
           +    I D         L       NQ+T + P+  +                       
Sbjct: 188 Q----IEDISPLASLTSLHYFTAYVNQITDITPVANMTR--------------------- 222

Query: 735 SSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794
                           L          ++ + +N+     P  +  L+ L  L I  N +
Sbjct: 223 ----------------LN---------SLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

Query: 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
           +    +++++LT+L+ L++ SN+++    + L +L+ L+ L L+NNQL      
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 2e-25
 Identities = 58/347 (16%), Positives = 111/347 (31%), Gaps = 71/347 (20%)

Query: 503 LDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP 562
           L      ++ QI      +      L+  +    + Q   +   +T L ++G  +     
Sbjct: 5   LATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVASI-- 59

Query: 563 PSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLN 622
             +     L++L++  N ++  I        L  L +  N  +            L  L 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELY 116

Query: 623 LNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWG--PI 680
           LN + +       L N   +  L++G N    +    L  +  L  L +  ++     PI
Sbjct: 117 LNEDNISDI--SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
            +         L  +  ++NQ+  + PL  L S                           
Sbjct: 174 AN------LTDLYSLSLNYNQIEDISPLASLTSLH------------------------- 202

Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
                                      N+     P  V  +  L SL I +N +T    S
Sbjct: 203 ---------------------YFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LS 237

Query: 801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
            L NL++L  L++ +N+++      +  L  L +LN+ +NQ+     
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 3e-17
 Identities = 52/277 (18%), Positives = 107/277 (38%), Gaps = 40/277 (14%)

Query: 571 LQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG 630
              L      ++ QI      +      ++  + +  + Q   +S  +  L + G ++  
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKVAS 58

Query: 631 PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP 690
                +     LE L++  NQI D  P  L  L++L  L + +N+    I D        
Sbjct: 59  I--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----ITDISALQNLT 110

Query: 691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGID 750
            LR +  + + ++ + PL  L    ++  G N+++      L   SN             
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD----LSPLSN------------- 153

Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
                 +T    + ++ ++ +   P  +  L  L SL++++N +     S L +LT L  
Sbjct: 154 ------MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHY 203

Query: 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
                N++    P  +A++  L+ L + NN++    P
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 36/207 (17%), Positives = 66/207 (31%), Gaps = 58/207 (28%)

Query: 642 LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQ 701
              L      I+  FP     L E    +L+       + D  T+     +  +  +  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKAS----VTDVVTQEELESITKLVVAGEK 55

Query: 702 LTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFA 761
           +  +  + YL + +                                              
Sbjct: 56  VASIQGIEYLTNLE---------------------------------------------- 69

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            ++L+ N+     P  +  L  L +L I  N +T    S+L+NLT L  L L+ + ++  
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDI 125

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPG 848
            P  LA+L  +  LNL  N     +  
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSDLSP 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  162 bits (413), Expect = 4e-43
 Identities = 81/335 (24%), Positives = 137/335 (40%), Gaps = 37/335 (11%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQ 195
                LLDL   N   ++      +   L  L+L+ N  +  +   +F+NL  LR L L+
Sbjct: 31  PTETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLR 88

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
           SN     IP  +   ++ L  LD+S N     +   F +L  L  L++ DN  V  I   
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 256 LGNNITQLAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
             + +  L  L L     +  IP+ + S+L  L+ L L + N        F  L +L  L
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST 374
            +++   + ++  +    LNLT + ++  N + +V       L  L+ L+LS   +S   
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST-- 262

Query: 375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
                S    L                     +L+ + L   Q+   +  + +  G++ L
Sbjct: 263 --IEGSMLHEL--------------------LRLQEIQLVGGQL-AVVEPYAFR-GLNYL 298

Query: 435 IELDLSRNFLTSIDH---LPWKNLEYLHLDSNSLQ 466
             L++S N LT+++        NLE L LDSN L 
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  154 bits (390), Expect = 5e-40
 Identities = 83/343 (24%), Positives = 132/343 (38%), Gaps = 43/343 (12%)

Query: 178 HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQ 237
            +P       + R LDL  N     +      +   L  L+L+ N  S   P +F+NL  
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 238 LCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF 297
           L  L L  N     IP  +   ++ L  LD+S N     +   F +L  L  L +  N+ 
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAK 356
           V      F+ L  L  L L     + SIP+     L  L  + L   N + ++  Y F +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKR 198

Query: 357 LKNLKVLSLSNISLSVSTKLTANSSF--PNLSALDLSACNISEFPDN-LRTQHQLELLDL 413
           L  LKVL +S+            +     NL++L ++ CN++  P   +R    L  L+L
Sbjct: 199 LYRLKVLEISHWPY---LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID-----HLPWKNLEYLHLDSNSLQGS 468
           S N I   I   M    +  L E+ L    L  ++      L    L  L++  N L  +
Sbjct: 256 SYNPIS-TIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLN--YLRVLNVSGNQLT-T 310

Query: 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           L                      S F ++ +++ L L +N L+
Sbjct: 311 LE--------------------ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  143 bits (363), Expect = 1e-36
 Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 21/325 (6%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           LDL  + +   +  +      P L +L L  N    S +  G  +   +L  L L S   
Sbjct: 37  LDLGKNRIK-TLNQDE-FASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGN 209
              IP  +   ++ L  LD+S N  I  +    F +L+ L+ L++  +N +  I     +
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFS 149

Query: 210 NITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
            +  L  L L   + +  IP+ + S+L  L  L L   +    I       + +L  L++
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328
           S   +   +  +      L  L++ + N          +L  L FL L+YN  I +I  S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS 266

Query: 329 IFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSA 387
           +   LL L EI L     +  VE Y F  L  L+VL++S   L+ + + +   S  NL  
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 388 LDLSA------CNISEFPDNLRTQH 406
           L L +      C +          +
Sbjct: 325 LILDSNPLACDCRLLWVFRRRWRLN 349

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 1e-32
 Identities = 69/317 (21%), Positives = 129/317 (40%), Gaps = 21/317 (6%)

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
           ++P  I        + L  +    ++   +FA   +L+ L L+   +S + +  A ++  
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80

Query: 384 NLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442
           NL  L L +  +   P         L  LD+SEN+I   +  +M+   ++ L  L++  N
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-DLYNLKSLEVGDN 138

Query: 443 FLTSIDH---LPWKNLEYLHLDSNSLQ----GSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
            L  I H       +LE L L+  +L      +L  L   ++   + + ++      SF 
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFK 197

Query: 496 NLSSIQYLDLS-NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLS 553
            L  ++ L++S    L    P CL    L +L +   N   ++P    +    L +L LS
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS 256

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQT 611
            N +       L   ++LQ + +    L+  +      G + L+VL++  N  +      
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 612 FAKSCVLVSLNLNGNRL 628
           F     L +L L+ N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 4e-28
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 56/339 (16%)

Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
                A+          P+ + T+    LLDL +N+I   +    +      L EL+L+ 
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTE--TRLLDLGKNRIK-TLNQDEFA-SFPHLEELELNE 65

Query: 442 NFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
           N ++++     ++L   NL  L L SN L+     +P  +                 F  
Sbjct: 66  NIVSAVEPGAFNNLF--NLRTLGLRSNRLK----LIPLGV-----------------FTG 102

Query: 497 LSSIQYLDLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSG 554
           LS++  LD+S N +   +         L++L++  N+    I      G   L  L L  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEK 161

Query: 555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTF 612
            +L      +L++   L  L + + N++  I +        L+VL++    +  ++    
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
                L SL++    L      ++ +  YL  L++  N I       L  LL LQ + L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 673 SNR--------FWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
             +        F G             LR+++ S NQLT
Sbjct: 281 GGQLAVVEPYAFRG----------LNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 3e-25
 Identities = 62/375 (16%), Positives = 113/375 (30%), Gaps = 72/375 (19%)

Query: 470 PDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLR 529
             +P       +  N +       F +   ++ L+L+ N +S                + 
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---------------AVE 72

Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL 589
              F             L  L L  N L+       T    L  LD+  N +   + + +
Sbjct: 73  PGAFNNLF--------NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

Query: 590 --GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDV 647
                 L+ L++  N+      + F+    L  L L    L      +L +   L VL +
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 648 GNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP 707
            +  I+    Y    L  L+VL +    +   +           L  +  +H  LT    
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLT---- 237

Query: 708 LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS 767
                                   +P            +    L+          ++LS 
Sbjct: 238 -----------------------AVP------YLAVRHLV--YLR---------FLNLSY 257

Query: 768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA 827
           N        ++ +L  L+ + +    L    P + R L  L  L++S N+L     +   
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 828 SLNYLSVLNLSNNQL 842
           S+  L  L L +N L
Sbjct: 318 SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 4e-25
 Identities = 72/354 (20%), Positives = 115/354 (32%), Gaps = 63/354 (17%)

Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
           +  + +          +P+ +  +    LDL  N  +       A    L  L L+ N +
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKS 615
               P +  N   L+ L + +N L   IP  +  G S L  LD+  N     L   F   
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
             L SL +  N L      +      LE L +    +       L  L  L VL LR   
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 676 FWGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY 729
                      +         +L++++ SH      +                       
Sbjct: 188 I--------NAIRDYSFKRLYRLKVLEISHWPYLDTMT---------------------- 217

Query: 730 MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNI 789
                      +      G++L          ++ ++           V  L  L+ LN+
Sbjct: 218 ----------PNCL---YGLNLT---------SLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 790 SHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           S+N ++    S L  L  L+ + L   +LA   P     LNYL VLN+S NQL 
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  162 bits (411), Expect = 9e-43
 Identities = 66/457 (14%), Positives = 139/457 (30%), Gaps = 25/457 (5%)

Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
           +  N  +     ++ +     + S   +   +  L+L  N             T+L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 316 LAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTK 375
           L+ N L       +  L  L  + L+ +         +     +++ L  +N ++S  + 
Sbjct: 65  LSSNVL--YETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSC 116

Query: 376 LTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
               S       + L+   I+   D     + +++ LDL  N+I   +          TL
Sbjct: 117 ----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTL 171

Query: 435 IELDLSRNFLTSIDH-LPWKNLEYLHLDSNSLQGSLPDLP--PHMVSFSISNNSLTGEIP 491
             L+L  NF+  +   + +  L+ L L SN L    P+      +   S+ NN L   I 
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 492 SSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551
            +     ++++ DL  N       +   +       +     +    Q   +    T   
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 552 LSGNHLEGPLPPSLTNCVKL-----QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSG 606
                 E    P     + L       L    +       E    +  + +D     +  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLEL 666
            + Q   +    ++L      L   +         L+              +  +    L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPL 409

Query: 667 QVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
           Q+L     R+     + ++      +R  D   ++ T
Sbjct: 410 QLLRAIVKRYEEMYVEQQSV-QNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  154 bits (391), Expect = 4e-40
 Identities = 58/479 (12%), Positives = 127/479 (26%), Gaps = 37/479 (7%)

Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
           I     N ++ +   +  ++   +  ASL  +   +  LDLS N  S    +  +   +L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
             L+L  N     +      +++ L  LDL++N               +  L+   NN  
Sbjct: 61  ELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
                       +    LA N++             +  + L  +           A   
Sbjct: 113 RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
            L+ L+L    +     +     F  L  LDLS+  ++      ++   +  + L  N++
Sbjct: 170 TLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW--KNLEYLHLDSNSLQGSLPDLPPHM 476
              I   +       L   DL  N         +  KN     +   +++          
Sbjct: 227 -VLIEKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 477 VSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS 536
              ++ +                +  L    ++L               L  + +  +  
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL---------------LSGQGSETE-R 327

Query: 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQV 596
           +        +   +          +            L+     L  Q+           
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL-PPSLVNCQYLEVLDVGNNQIDD 654
             ++       L     +   L  L     R +        V    +   D+  ++   
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (373), Expect = 9e-38
 Identities = 62/480 (12%), Positives = 133/480 (27%), Gaps = 60/480 (12%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
               +  + + +       SL  +   +  LDLS N       +  +   +L  L+L SN
Sbjct: 10  NRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
                +      +++ L  LDL++N               +  L   +N+    +  S G
Sbjct: 69  VLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCSRG 119

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGL 316
                   + L++N  +           ++ +L+L+ N        ++  +   L  L L
Sbjct: 120 QG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
            YN +   +   +                              LK L LS+  L     +
Sbjct: 177 QYNFIY-DVKGQVV--------------------------FAKLKTLDLSSNKL---AFM 206

Query: 377 TAN-SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI 435
                S   ++ + L    +      LR    LE  DL  N           D       
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQR 263

Query: 436 ELDLSRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLT----- 487
              +++  +  +              H  +   +         +++     ++L      
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 488 --GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGSIPQTNAKG 544
               +     N +  + +D         I Q         TL+ +       +       
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 545 CKLTYLRLSGN-HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
            +L          +E        + ++L    V          + + N+ ++  DM  + 
Sbjct: 384 AELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 4e-36
 Identities = 88/498 (17%), Positives = 161/498 (32%), Gaps = 66/498 (13%)

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLD 412
                  K+  +++ SL  +   +   S  N+  LDLS   +S+     L    +LELL+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 413 LSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL 472
           LS N +   +        + TL  LDL+ N++  +   P  ++E LH  +N++       
Sbjct: 65  LSSNVLYETLDLE----SLSTLRTLDLNNNYVQELLVGP--SIETLHAANNNISRVSCSR 118

Query: 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG-QIPQCLGNST-LETLDLRM 530
                +  ++NN +T          S +QYLDL  N +      +   +S  LE L+L+ 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG 590
           N       Q      KL  L LS N L   + P   +   + ++ + NN L   I + L 
Sbjct: 179 NFIYDVKGQVVFA--KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 591 NST-LQVLDMRMNNFS-GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648
            S  L+  D+R N F  G+L   F+K+  +    +    +K     +   C    +   G
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 649 NNQIDDTFPYWLDVLLELQVLILRSNRFWG--PIGDTKTRVPFPKLRIMDCSHNQLTGVL 706
               +D    + D L+ L+          G         R    + R +D    Q     
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-- 350

Query: 707 PLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLS 766
                                                     +  Q+        T++  
Sbjct: 351 ------------------------------------------VIDQVTLRKQAKITLEQK 368

Query: 767 SNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA-GRIPTQ 825
                 ++         L             +  +    + L+ L     +     +  Q
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIE-LQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 826 LASLNYLSVLNLSNNQLE 843
               N +   ++  ++  
Sbjct: 428 SVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 5e-36
 Identities = 72/452 (15%), Positives = 144/452 (31%), Gaps = 47/452 (10%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
             R +   +  +     +  +       ++  LDL S N    I  +     T+L  L+L
Sbjct: 9   GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELLNL 65

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSN------------------NFVGKIPASLGNNIT 212
           S N  +        +L  LR LDL +N                  N + ++  S G    
Sbjct: 66  SSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-- 121

Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
               + L++N  +           ++ YLDL  N       A L  +   L +L+L  N 
Sbjct: 122 -KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL 332
               +        +L  L+L  N     +   F +   ++++ L  N+L+  I  ++   
Sbjct: 181 IY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 333 LNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSA 392
            NL    L  + F        F+K + ++ ++   +   ++ +     + P L      A
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTL--GHYGA 293

Query: 393 CNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT-----LIELDLSRNFLTSI 447
               + P       +L  L   E+ +     S    +           E+D  +    ++
Sbjct: 294 YCCEDLPAPFA--DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 448 DH---LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG--EIPSSFCNLSSIQY 502
                L  +    L     +L   + +          +     G  E+  +    S +Q 
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411

Query: 503 LDLSNNSLSGQI--PQCLGNSTLETLDLRMNN 532
           L              Q + N+ +   D+  + 
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (334), Expect = 9e-33
 Identities = 59/451 (13%), Positives = 126/451 (27%), Gaps = 37/451 (8%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFT-DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD 169
             +L  LNL+ N      +      +   +L  LDL +      +          +  L 
Sbjct: 57  FTKLELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLH 105

Query: 170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HI 228
            + N+ I  +    S     +++ L +N     +        +++ YLDL  N     + 
Sbjct: 106 AANNN-ISRVSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 229 PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLL 288
               ++   L +L+L  N    ++   +     +L  LDLSSN  +  +   F +   + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 289 WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGS 348
           W++L  N  V  I         L    L  N          F       +          
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKK 274

Query: 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANS----SFPNLSALDLSACNISEFPDNLRT 404
           +   +  +     +               A+          + L                
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 405 QHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYL------ 458
           Q +   +D  + Q    +   +        I L+  +  L        +    L      
Sbjct: 335 QARQREIDALKEQY-RTVIDQVTL-RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 459 HLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG-QIPQC 517
            +    LQ +  +  P  +  +I        +       ++I+  D+  +  +       
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452

Query: 518 LGNSTLETLDLRMNNFQGSIPQTNAKGCKLT 548
                    DL + +   ++ +   +   L 
Sbjct: 453 RLKKLNGEADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 4e-16
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 35/238 (14%)

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLEL 666
           ++ +            +  + LK  L     +   ++ LD+  N +       L    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 667 QVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVE 726
           ++L L SN     + +T        LR +D ++N +  +L    +E+    +H  NN++ 
Sbjct: 61  ELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIET----LHAANNNIS 112

Query: 727 VGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKS 786
               R+  S                           I L++N+         G  + ++ 
Sbjct: 113 ----RVSCS--------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 787 LNISHNNLTG-CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           L++  N +          +   LE L+L  N +   +         L  L+LS+N+L 
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           I E+    N  K   ++ ++L   + S  ++   ++ LDLS N L+      LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 834 VLNLSNNQLEGPIP 847
           +LNLS+N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
              ++ +  ++ +  +     ++K L++S N L+    + L   T+LE L+LSSN L   
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGGPQ 851
               L SL+ L  L+L+NN ++  +  GP 
Sbjct: 73  -TLDLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  157 bits (399), Expect = 6e-42
 Identities = 75/379 (19%), Positives = 140/379 (36%), Gaps = 46/379 (12%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFS--NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217
           N      + D+ I+     +   F    L+  + +    N+ + K+PA+L ++  Q+  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF-KNSTMRKLPAALLDSFRQVELL 74

Query: 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHI 277
           +L+          +F+    +  L +  N     +P  +  N+  L  L L  N  S   
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE 337
              F N  +L  L++  NN      D F   T L  L L+ N  +  +  S+    +L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIP--SLFH 190

Query: 338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE 397
             +S++  S        A    ++ L  S+ S+     +        L+ L L   N+++
Sbjct: 191 ANVSYNLLS------TLAIPIAVEELDASHNSI---NVVRGP-VNVELTILKLQHNNLTD 240

Query: 398 FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL--PWKNL 455
               L     L  +DLS N++  +I    +   +  L  L +S N L +++    P   L
Sbjct: 241 TA-WLLNYPGLVEVDLSYNEL-EKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTL 297

Query: 456 EYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP 515
           + L L  N L                        +  +      ++ L L +NS+   + 
Sbjct: 298 KVLDLSHNHLL----------------------HVERNQPQFDRLENLYLDHNSIV-TLK 334

Query: 516 QCLGNSTLETLDLRMNNFQ 534
               + TL+ L L  N++ 
Sbjct: 335 LST-HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  155 bits (393), Expect = 3e-41
 Identities = 74/398 (18%), Positives = 134/398 (33%), Gaps = 45/398 (11%)

Query: 99  HGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL-----LDLCSCNFTGS 153
           +   P       +    + +  F D +    +      F  +TL     +   +      
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59

Query: 154 IPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNIT 212
           +P +L ++  Q+  L+L+    I  I + +F+  H ++ L +   N +  +P  +  N+ 
Sbjct: 60  LPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYM-GFNAIRYLPPHVFQNVP 117

Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
            L  L L  N  S      F N  +L  L + +N+    I        T L  L LSSN 
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL 332
            + H+    S +  L   N+ YN               +  L  ++N  I  +   +   
Sbjct: 177 LT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPVN-- 225

Query: 333 LNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANS--SFPNLSALDL 390
           + LT + L  +N +   +         L  + LS   L    K+  +       L  L +
Sbjct: 226 VELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYI 279

Query: 391 SACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL 450
           S   +       +    L++LDLS N +   +           L  L L  N + ++   
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLS 336

Query: 451 PWKNLEYLHLDSNSLQG-------------SLPDLPPH 475
               L+ L L  N                 ++ D   H
Sbjct: 337 THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (348), Expect = 3e-35
 Identities = 66/358 (18%), Positives = 128/358 (35%), Gaps = 25/358 (6%)

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNL 335
           I S+         ++++              L     +    +  +  +P+++ +    +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 71

Query: 336 TEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN--SSFPNLSALDLSAC 393
             + L+       ++ Y FA    ++ L +   ++     L  +   + P L+ L L   
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERN 127

Query: 394 NISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW 452
           ++S  P  +     +L  L +S N +  RI    +     +L  L LS N LT +D    
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLI 185

Query: 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
            +L + ++  N L  +L      +     S+NS+   +         +  L L +N+L+ 
Sbjct: 186 PSLFHANVSYNLLS-TLAIP-IAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT- 239

Query: 513 QIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLSGNHLEGPLPPSLTNCVKL 571
                L    L  +DL  N  +  I        + L  L +S N L   L         L
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297

Query: 572 QFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
           + LD+ +N+L   +         L+ L +  N+       T      L +L L+ N  
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (318), Expect = 2e-31
 Identities = 65/353 (18%), Positives = 125/353 (35%), Gaps = 38/353 (10%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           +    S +   +P+   L    ++  LNL        +I +       ++  L +   N 
Sbjct: 50  VTFKNSTMR-KLPAAL-LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYM-GFNA 104

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGN 209
              +PP +  N+  L  L L  N  +  +P   F N  +L  L + +NN   +I      
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162

Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL--------GNNIT 261
             T L  L LSSN  + H+    S +  L + ++  N     +   +         N+I 
Sbjct: 163 ATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSIN 218

Query: 262 --------QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
                   +L  L L  N  +    +   N   L+ ++L YN     +   F  + +L  
Sbjct: 219 VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373
           L ++ N  + ++      +  L  + LS ++    VE  +  +   L+ L L + S+   
Sbjct: 277 LYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSI--- 330

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWM 426
             L  + +   L  L LS  +             +    + +     +I   +
Sbjct: 331 VTLKLS-THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 2e-28
 Identities = 78/396 (19%), Positives = 144/396 (36%), Gaps = 73/396 (18%)

Query: 455 LEYLHLDSNSLQ--GSLPDLP-PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
              +H+D  +        D+   +    +  N+++     +   +   ++ L+L++  + 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 512 GQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCV 569
            +I         T++ L +  N  +   P        LT L L  N L         N  
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 570 KLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNR 627
           KL  L + NNNL  +I +      ++LQ L +  N  +            L   N++ N 
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNL 197

Query: 628 LKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRV 687
           L      +L     +E LD  +N I+        V +EL +L L+ N     + DT   +
Sbjct: 198 LS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN----LTDTAWLL 245

Query: 688 PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMK 747
            +P L  +D S+N+L  ++       F  M                              
Sbjct: 246 NYPGLVEVDLSYNELEKIMY----HPFVKMQR---------------------------- 273

Query: 748 GIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTE 807
              L+          + +S+NR    +      + +LK L++SHN+L   +  +      
Sbjct: 274 ---LE---------RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 319

Query: 808 LESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           LE+L L  N +   +   L++ + L  L LS+N  +
Sbjct: 320 LENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (285), Expect = 4e-27
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 36/339 (10%)

Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
              +     + + M          +        +    + +       L +  +++ L++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 577 GNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS 635
            +  +            T+Q L M  N      P  F    +L  L L  N L       
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP---FPKL 692
             N   L  L + NN ++            LQ L L SNR         T V     P L
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL--------THVDLSLIPSL 188

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQ 752
              + S+N L+ +     +E   A    ++NS+      +         + + +  + LQ
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDA----SHNSIN----VVR------GPVNVELTILKLQ 234

Query: 753 MERI--LTTFA------TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRN 804
              +              +DLS N  ++ +     K+  L+ L IS+N L   +    + 
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293

Query: 805 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           +  L+ LDLS N L   +       + L  L L +N + 
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (265), Expect = 2e-24
 Identities = 73/428 (17%), Positives = 138/428 (32%), Gaps = 85/428 (19%)

Query: 401 NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI-----DHLPWKNL 455
           +   Q+     D+  +     +     DI ++    +    + +  +     D      +
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR--QV 71

Query: 456 EYLHLDSNSLQ----GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           E L+L+   ++     +       +    +  N++    P  F N+  +  L L  N LS
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 512 GQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCV 569
             +P+ +      L TL +  NN +     T      L  L+LS N L       + +  
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-- 187

Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
            L   +V  N LS  +        ++ LD   N+ +        +   L  L L  N L 
Sbjct: 188 -LFHANVSYNLLS-TLA---IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 239

Query: 630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPF 689
                 L+N   L  +D+  N+++    +    +  L+ L + +NR           +  
Sbjct: 240 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL------VALNLYG 291

Query: 690 ---PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTM 746
              P L+++D SHN L                      VE    +               
Sbjct: 292 QPIPTLKVLDLSHNHLL--------------------HVERNQPQFDR------------ 319

Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTG-CIPSSLRNL 805
               L+          + L  N     +       ++LK+L +SHN+     + +  RN+
Sbjct: 320 ----LE---------NLYLDHNSIVT-LKL--STHHTLKNLTLSHNDWDCNSLRALFRNV 363

Query: 806 TELESLDL 813
                 D 
Sbjct: 364 ARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 32/243 (13%), Positives = 71/243 (29%), Gaps = 61/243 (25%)

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLEL 666
            +       CV   ++++            +     +++   N+ +       LD   ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 667 QVLILRSNRFWGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG 720
           ++L L   +           +          ++ +    N +  + P      F+     
Sbjct: 72  ELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQN---- 115

Query: 721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
                                               +     + L  N        +   
Sbjct: 116 ------------------------------------VPLLTVLVLERNDLSSLPRGIFHN 139

Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 840
              L +L++S+NNL      + +  T L++L LSSN+L   +   L+ +  L   N+S N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 196

Query: 841 QLE 843
            L 
Sbjct: 197 LLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 39/259 (15%)

Query: 587 ECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646
               +     + + M                   +    + ++      L + + +E+L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVL 706
           + + QI++   Y       +Q L +  N               P L ++    N L+ + 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 707 P--LWYLESFKAM-MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATI 763
                       + M  NN                       ++ I+    +  T+   +
Sbjct: 134 RGIFHNTPKLTTLSMSNNN-----------------------LERIEDDTFQATTSLQNL 170

Query: 764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
            LSSNR    +      + SL   N+S+N L+     +L     +E LD S N +   + 
Sbjct: 171 QLSSNRL-THVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 221

Query: 824 TQLASLNYLSVLNLSNNQL 842
             +     L++L L +N L
Sbjct: 222 GPV--NVELTILKLQHNNL 238

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  153 bits (388), Expect = 1e-39
 Identities = 95/520 (18%), Positives = 162/520 (31%), Gaps = 48/520 (9%)

Query: 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFV 200
            L+D         +P  L    T    L++S N       S   +L +LR L +  N   
Sbjct: 3   FLVDRSKNGLI-HVPKDLSQKTT---ILNISQNYISELWTSDILSLSKLRILIISHNRI- 57

Query: 201 GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI 260
             +  S+     +L YLDLS N        S      L +LDL  N F          N+
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
           +QL +L LS+           ++L     L +    +  K       L   +   L    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVF 172

Query: 321 LIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANS 380
                   I ++   T   L  SN    +E        N     LS ++   +    +N 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLE-------DNKCSYFLSILAKLQTNPKLSNL 225

Query: 381 SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
           +  N+     S   I +   +    +   + ++                 +  L    + 
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWY-FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 441 RNFLTSIDHLPW---KNLEYLHLDSNSLQGSLPDLPPHMVSF---SISNNSLTGEIPSSF 494
            +         +    N+   +   +  +      P  +  F     SNN LT  +  + 
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554
            +L+ ++ L L  N L               L                    L  L +S 
Sbjct: 345 GHLTELETLILQMNQLK-------------ELSKIAEMTTQMK--------SLQQLDISQ 383

Query: 555 NHLEGPLPPSL-TNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFA 613
           N +         +    L  L++ +N L+  I  CL    ++VLD+  N    S+P+   
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVV 441

Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           K   L  LN+  N+LK            L+ + +  N  D
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  146 bits (371), Expect = 2e-37
 Identities = 101/490 (20%), Positives = 170/490 (34%), Gaps = 50/490 (10%)

Query: 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS 171
            +   LN++ N    S++ +        L +L +        +  S+     +L YLDLS
Sbjct: 21  QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77

Query: 172 INSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS 231
            N  +  I         L+HLDL  N F          N++QL +L LS+          
Sbjct: 78  HNK-LVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 232 FSNLQQLC-YLDLDDNHFVGEIPASLGN-NITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
            ++L      L L + +   E P  L + N   L  +  ++  F   +  S   +  L  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 290 LNLEYNNFVGKIPDMFTNLT------QLSFLGLAYNELIGSIPSSIFELLNLTEI-YLSF 342
            N++      K     + L       +LS L L   E   +    I +L+  T + Y S 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 343 SN--FSGSVELYDFAKLKN-LKVLSLSNISLSVSTKLTAN--SSFPNLSALDLSACNISE 397
           SN    G ++  DF      LK LS+  +   V     +     F N++  + +      
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 398 FPDNLRTQ-HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP----- 451
                 ++      LD S N +            +  L  L L  N L  +  +      
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLL-TDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
            K+L+ L +  NS+                                 S+  L++S+N L+
Sbjct: 373 MKSLQQLDISQNSVSYDEK--------------------KGDCSWTKSLLSLNMSSNILT 412

Query: 512 GQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
             I +CL    ++ LDL  N  + SIP+   K   L  L ++ N L+            L
Sbjct: 413 DTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 572 QFLDVGNNNL 581
           Q + +  N  
Sbjct: 471 QKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (332), Expect = 2e-32
 Identities = 90/475 (18%), Positives = 168/475 (35%), Gaps = 59/475 (12%)

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           +P  L    T    L++S N  S    S   +L +L  L + +N        +F    +L
Sbjct: 15  VPKDLSQKTT---ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 312 SFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN---- 367
            +L L++N+L   I       +NL  + LSF+ F       +F  +  LK L LS     
Sbjct: 72  EYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 368 --------------ISLSVSTKLTANSSFPNLSALDLSACNISEFPDN---------LRT 404
                         + L +            L   +  + +I    +          ++T
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 405 QHQLELLDLSENQIGGRIPSWMWDIGVH---------TLIELDLSRNFLTSIDHLPW-KN 454
              LEL ++       +   ++  +            TL  ++ + N    I  L W   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 455 LEYLHLDSNSLQGSLPDLPPHMVSFS--------ISNNSLTGEIPSSFCNLSSIQYLDLS 506
           + Y  + +  LQG L          S        + ++         +   S++   + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 507 NNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE--GPLPP 563
            +        C    S    LD   N    ++ +      +L  L L  N L+    +  
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 564 SLTNCVKLQFLDVGNNNLSGQIPE--CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSL 621
             T    LQ LD+  N++S    +  C    +L  L+M  N  + ++ +       +  L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVL 426

Query: 622 NLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRF 676
           +L+ N++K  +P  +V  + L+ L+V +NQ+        D L  LQ + L +N +
Sbjct: 427 DLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 6e-26
 Identities = 86/485 (17%), Positives = 160/485 (32%), Gaps = 63/485 (12%)

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT-LIELDLSRNFLTS 446
           +D S   +   P +L  +    +L++S+N I     S   DI   + L  L +S N +  
Sbjct: 5   VDRSKNGLIHVPKDLSQK--TTILNISQNYISELWTS---DILSLSKLRILIISHNRIQY 59

Query: 447 I-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG-EIPSSFCNLSSI 500
           +            LEYL L  N L         ++    +S N+     I   F N+S +
Sbjct: 60  LDISVFKFNQ--ELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP 560
           ++L LS   L       + +  +  + L +    G                L        
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNK 176

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQ---------- 610
               + +       ++  +N+   + +   +  L +L     N   S             
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 611 -----TFAKSCVLVSLNLNGNRLKGP-----LPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
                       +   +++  +L+G         S  + + L +  V ++       Y  
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVP--FPKLRIMDCSHNQLTGVLPLWYLESFKAMM 718
           ++   + +     +             P        +D S+N LT  +     E+   + 
Sbjct: 297 EIFSNMNIKNFTVSG----TRMVHMLCPSKISPFLHLDFSNNLLTDTVF----ENCGHL- 347

Query: 719 HGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV 778
                  E+  + L    N  + +    +         + +   +D+S N       +  
Sbjct: 348 ------TELETLIL--QMNQLKELSKIAEMTTQ-----MKSLQQLDISQNSVSYDEKKGD 394

Query: 779 -GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837
                SL SLN+S N LT  I   L     ++ LDL SNK+   IP Q+  L  L  LN+
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 838 SNNQL 842
           ++NQL
Sbjct: 452 ASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 49/259 (18%), Positives = 93/259 (35%), Gaps = 10/259 (3%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDL--CSCNFTGSIPPSL 158
           +      L +   +   +++     G      F     SL  L +     +  G     +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 159 GNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLD 218
               + +   + +++          S +    HLD  +N            ++T+L  L 
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLI 354

Query: 219 LSSNSFS--GHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           L  N       I    + ++ L  LD+  N    +      +    L  L++SSN  +  
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNL 335
           I        ++L L+   +N +  IP     L  L  L +A N+L  S+P  IF+ L +L
Sbjct: 415 IFRCLPPRIKVLDLH---SNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSL 470

Query: 336 TEIYLSFSNFSGSVELYDF 354
            +I+L  + +  S    D+
Sbjct: 471 QKIWLHTNPWDCSCPRIDY 489

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 61/389 (15%), Positives = 118/389 (30%), Gaps = 35/389 (8%)

Query: 458 LHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ- 516
           +    N L     DL       +IS N ++    S   +LS ++ L +S+N +   +   
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDIS 63

Query: 517 -CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG-PLPPSLTNCVKLQFL 574
               N  LE LDL  N     I         L +L LS N  +  P+     N  +L+FL
Sbjct: 64  VFKFNQELEYLDLSHNKLV-KISCHPTV--NLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 575 DVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
            +   +L       + +  +  + + +    G   +         + +L+          
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE-KEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 635 SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRI 694
            +++     V ++  + I               +  L++N                 L  
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL----------SNLTLNN 229

Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
           ++ + N    +L L +  +       N         R    S                  
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG----------------- 272

Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
             L   +   + S+ F      +    +++   N + +            ++    LD S
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 815 SNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           +N L   +      L  L  L L  NQL+
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 43/315 (13%), Positives = 95/315 (30%), Gaps = 25/315 (7%)

Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE--CLGNSTLQVLDMRMNNF 604
            T L +S N++       + +  KL+ L + +N +   +       N  L+ LD+  N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLKG-PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
              +      +  L  L+L+ N     P+     N   L+ L +    ++ +    +  L
Sbjct: 82  V-KISCHPTVN--LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 664 LELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNN 723
              +VL++    +                          T             +      
Sbjct: 139 NISKVLLVLGETYGEKEDPEG----LQDFNTESLHIVFPTNKE----FHFILDVSVKTVA 190

Query: 724 SVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNS 783
           ++E+  ++     N        +  +    +    T   I+ + N F R +  V     +
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV--WHTT 248

Query: 784 LKSLNISHNNLTGCIPSSL-----RNLTELESLDLSSNKLAG---RIPTQLASLNYLSVL 835
           +   +IS+  L G +          +L  L    + S+        I    +++N  +  
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 836 NLSNNQLEGPIPGGP 850
                 +    P   
Sbjct: 309 VSGTRMVHMLCPSKI 323

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 41/283 (14%), Positives = 84/283 (29%), Gaps = 14/283 (4%)

Query: 573 FLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
            +D   N L   +P+ L   T  +L++  N  S            L  L ++ NR++   
Sbjct: 4   LVDRSKNGLI-HVPKDLSQKT-TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKL 692
                  Q LE LD+ +N++           + L+ L L  N F   +   K      +L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQL 117

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQ 752
           + +  S   L        +     +       V              +        I   
Sbjct: 118 KFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 753 MERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLD 812
             +       +D+S           +  +      +   + L     +   +   L +++
Sbjct: 174 TNKEFHFI--LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 813 LSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTF 855
            + N        QL     +   ++SN +L+G +       + 
Sbjct: 232 TTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  150 bits (379), Expect = 6e-38
 Identities = 82/401 (20%), Positives = 140/401 (34%), Gaps = 66/401 (16%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFS--NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217
           N      + D+ I+     +   F    L+  + +    N+ + K+PA+L ++  Q+  L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF-KNSTMRKLPAALLDSFRQVELL 80

Query: 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHI 277
           +L+          +F+    +  L +  N     +P  +  N+  L  L L  N  S   
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE 337
              F N  +L  L++  NN      D F   T L  L L+ N               LT 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--------------RLTH 185

Query: 338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE 397
           +              D + + +L   ++S   LS             +  LD S  +I+ 
Sbjct: 186 V--------------DLSLIPSLFHANVSYNLLSTLAIP------IAVEELDASHNSINV 225

Query: 398 FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEY 457
               +    +L +L L  N +          +    L+E+DLS N L  I + P+  ++ 
Sbjct: 226 VRGPV--NVELTILKLQHNNLT-DTAWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 458 LHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC 517
           L                      ISNN L   +      + +++ LDLS+N L       
Sbjct: 280 LE------------------RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 518 LGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE 558
                LE L L  N+   ++  +      L  L LS N  +
Sbjct: 321 PQFDRLENLYLDHNSIV-TLKLSTHHT--LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  129 bits (325), Expect = 3e-31
 Identities = 101/563 (17%), Positives = 165/563 (29%), Gaps = 61/563 (10%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           +    S +   +P+   L    ++  LNL        +I +       ++  L +   N 
Sbjct: 56  VTFKNSTMR-KLPAAL-LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYM-GFNA 110

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGN 209
              +PP +  N+  L  L L  N  +  +P   F N  +L  L + SNN + +I      
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQ 168

Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
             T L  L LSSN  + H+    S +  L + ++  N     +          +  LD S
Sbjct: 169 ATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-STLAIP-----IAVEELDAS 219

Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
            N  +         L     L L++NN          N   L  + L+YNE +  I    
Sbjct: 220 HNSINVVRGPVNVELT---ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE-LEKIMYHP 273

Query: 330 FELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALD 389
                                   F K++ L+ L +SN  L            P L  LD
Sbjct: 274 ------------------------FVKMQRLERLYISNNRLVALNLYGQP--IPTLKVLD 307

Query: 390 LSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH 449
           LS  ++     N     +LE L L  N I   +         HTL  L LS N       
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTH----HTLKNLTLSHNDWDCNSL 362

Query: 450 LPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508
               +N+    +D       +     H +    S+      +       S ++ +  +  
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422

Query: 509 SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNC 568
             S         S    +  +         Q  A   ++  LR     L           
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA---EVNELRAEVQQLTNEQIQQEQLL 479

Query: 569 VKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
             L      + NL        G +       ++        Q F              + 
Sbjct: 480 QGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKER-QAFKLRETQARRTEADAKQ 536

Query: 629 KGPLPPSLVNCQYLEVLDVGNNQ 651
           K        N    + LD    +
Sbjct: 537 KETEDLEQENIALEKQLDNKRAK 559

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (293), Expect = 4e-27
 Identities = 69/374 (18%), Positives = 121/374 (32%), Gaps = 55/374 (14%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLD-LSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTN 541
             ++    P   C  S++QY     +  +  Q           TL+              
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN-------------- 51

Query: 542 AKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMR 600
                   +    + +       L +  +++ L++ +  +            T+Q L M 
Sbjct: 52  ----NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
            N      P  F    +L  L L  N L         N   L  L + NN ++       
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVP---FPKLRIMDCSHNQLTGVLPLWYLESFKAM 717
                LQ L L SNR         T V     P L   + S+N L+ +     +E   A 
Sbjct: 168 QATTSLQNLQLSSNRL--------THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA- 218

Query: 718 MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERI--LTTFA------TIDLSSNR 769
              ++NS+      +         + + +  + LQ   +              +DLS N 
Sbjct: 219 ---SHNSIN----VVR------GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265

Query: 770 FQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL 829
            ++ +     K+  L+ L IS+N L   +    + +  L+ LDLS N L   +       
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 830 NYLSVLNLSNNQLE 843
           + L  L L +N + 
Sbjct: 324 DRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 9e-27
 Identities = 82/454 (18%), Positives = 153/454 (33%), Gaps = 116/454 (25%)

Query: 395 ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH---LP 451
                 NL  Q+     D+  +     +     DI ++    +    + +  +       
Sbjct: 16  YKCIDSNL--QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 73

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           ++ +E L+L+   ++    ++  +                 +F    +IQ L +  N++ 
Sbjct: 74  FRQVELLNLNDLQIE----EIDTY-----------------AFAYAHTIQKLYMGFNAIR 112

Query: 512 GQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
                 L     + +                    LT L L  N L         N  KL
Sbjct: 113 Y-----LPPHVFQNVP------------------LLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 572 QFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
             L + NNNL  +I +      ++LQ L +  N  +            L   N++ N L 
Sbjct: 150 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLS 205

Query: 630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPF 689
                +L     +E LD  +N I+        V +EL +L L+ N     + DT   + +
Sbjct: 206 -----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN----LTDTAWLLNY 253

Query: 690 PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGI 749
           P L  +D S+N+L  ++       F  M                                
Sbjct: 254 PGLVEVDLSYNELEKIMY----HPFVKMQR------------------------------ 279

Query: 750 DLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELE 809
            L+          + +S+NR    +      + +LK L++SHN+L   +  +      LE
Sbjct: 280 -LE---------RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327

Query: 810 SLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           +L L  N +   +   L++ + L  L LS+N  +
Sbjct: 328 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  147 bits (373), Expect = 5e-37
 Identities = 79/329 (24%), Positives = 128/329 (38%), Gaps = 38/329 (11%)

Query: 355 AKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLS 414
                  VL++    L   T L  +    +++ L +   N++  P       +L  L++S
Sbjct: 37  CLNNGNAVLNVGESGL---TTLP-DCLPAHITTLVIPDNNLTSLPALPP---ELRTLEVS 89

Query: 415 ENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPP 474
            NQ+   +P          L+EL +  N LT +  LP   L  L +  N L  SLP LPP
Sbjct: 90  GNQLT-SLPVLPPG-----LLELSIFSNPLTHLPALP-SGLCKLWIFGNQLT-SLPVLPP 141

Query: 475 HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQ 534
            +   S+S+N L   +P+    L     L   NN L+  +P       L+ L +  N   
Sbjct: 142 GLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLPSG--LQELSVSDNQLA 194

Query: 535 GSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTL 594
            S+P       +L  L    N L   LP   +    L+ L V  N L+  +P       L
Sbjct: 195 -SLPTLP---SELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVLPSE--L 243

Query: 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
           + L +  N  + SLP   +    L+SL++  N+L   LP SL++      +++  N + +
Sbjct: 244 KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 298

Query: 655 TFPYWLDVLLELQVLILRSNRFWGPIGDT 683
                L  +           RF       
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  146 bits (371), Expect = 8e-37
 Identities = 77/369 (20%), Positives = 131/369 (35%), Gaps = 43/369 (11%)

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
              A L++  +  +  +P        +  L + DN+    +PA        L  L++S N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGN 91

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE 331
             +  +P     L +L   +    +    +P + + L +L    +  N+L  S+P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLW---IFGNQLT-SLPVLPPG 142

Query: 332 LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS 391
           L  L+      ++               L  L   N  L   T L        L  L +S
Sbjct: 143 LQELSVSDNQLASLPAL--------PSELCKLWAYNNQL---TSL--PMLPSGLQELSVS 189

Query: 392 ACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP 451
              ++  P       +L  L    N++   +P+         L EL +S N LTS+  LP
Sbjct: 190 DNQLASLPTLP---SELYKLWAYNNRL-TSLPALP-----SGLKELIVSGNRLTSLPVLP 240

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
              L+ L +  N L  SLP LP  ++S S+  N LT  +P S  +LSS   ++L  N LS
Sbjct: 241 -SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 512 GQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
            +  Q L   T                 +  +  +  +L  + + L            + 
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL-AAADWLVPAREGEPAPADRW 356

Query: 572 QFLDVGNNN 580
                 +N 
Sbjct: 357 HMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  140 bits (354), Expect = 1e-34
 Identities = 70/381 (18%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 235 LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY 294
                 L++ ++     +P  L  +IT L    +  N  +  +P+    L+    L +  
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPAHITTL---VIPDNNLT-SLPALPPELR---TLEVSG 90

Query: 295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
           N     +P +   L +LS        L             L ++++  +  +    L   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVL--- 139

Query: 355 AKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLS 414
                L+ LS+S+  L     L A      L  L      ++  P        L+ L +S
Sbjct: 140 --PPGLQELSVSDNQL---ASLPA--LPSELCKLWAYNNQLTSLPMLP---SGLQELSVS 189

Query: 415 ENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPP 474
           +NQ+   +P+         L +L    N LTS+  LP   L+ L +  N L  SLP LP 
Sbjct: 190 DNQL-ASLPT-----LPSELYKLWAYNNRLTSLPALP-SGLKELIVSGNRLT-SLPVLPS 241

Query: 475 HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNF 533
            +    +S N LT  +P     L     L +  N L+ ++P+ L + S+  T++L  N  
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST 593
                +T     ++T        +        +   + + L +   +      E      
Sbjct: 297 S---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 594 LQVLDMRMNNFSGSLPQTFAK 614
            +       + + +      +
Sbjct: 354 DRWHMFGQEDNADAFSLFLDR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  135 bits (340), Expect = 5e-33
 Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 50/302 (16%)

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ 466
              +L++ E+ +   +P     +  H +  L +  N LTS+  LP   L  L +  N L 
Sbjct: 41  GNAVLNVGESGLT-TLPD---CLPAH-ITTLVIPDNNLTSLPALP-PELRTLEVSGNQLT 94

Query: 467 GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETL 526
            SLP LPP ++  SI +N LT  +P+    L     L +  N L+  +P       L+ L
Sbjct: 95  -SLPVLPPGLLELSIFSNPLT-HLPALPSGL---CKLWIFGNQLT-SLPVLPPG--LQEL 146

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
            +  N    S+P   A   +L  L    N L   LP   +    LQ L V +N L+  +P
Sbjct: 147 SVSDNQLA-SLP---ALPSELCKLWAYNNQLTS-LPMLPSG---LQELSVSDNQLA-SLP 197

Query: 587 ECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646
                  L  L    N  + SLP   +    L  L ++GNRL   LP        L+ L 
Sbjct: 198 TLPSE--LYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLTS-LPVLPSE---LKELM 247

Query: 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP-----FPKLRIMDCSHNQ 701
           V  N++  + P        L  L +  N+         TR+P           ++   N 
Sbjct: 248 VSGNRLT-SLPMLPS---GLLSLSVYRNQL--------TRLPESLIHLSSETTVNLEGNP 295

Query: 702 LT 703
           L+
Sbjct: 296 LS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (328), Expect = 2e-31
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 62/426 (14%)

Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSIN 173
              LN+  +    + +          +T L +   N T S+P         L  L++S N
Sbjct: 42  NAVLNVGESGL--TTLPDCL---PAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGN 91

Query: 174 SFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFS 233
             +  +P     L +L                 L    + L  L +  N  +  +P    
Sbjct: 92  Q-LTSLPVLPPGLLELSIFSNPLT--------HLPALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 234 NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE 293
            LQ+   L + DN     +PA        L  L   +N  +  +P   S LQ+   L++ 
Sbjct: 142 GLQE---LSVSDNQL-ASLPALPSE----LCKLWAYNNQLT-SLPMLPSGLQE---LSVS 189

Query: 294 YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYD 353
            N     +P + + L +L         L             L E+ +S +  +    L  
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTSLPVL-- 239

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTA-NSSFPNLSALDLSACNISEFPDNLRTQHQLELLD 412
                 LK L +S        +LT+       L +L +    ++  P++L        ++
Sbjct: 240 ---PSELKELMVSG------NRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290

Query: 413 LSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL 472
           L  N +  R    + +     +         +   D               +    L   
Sbjct: 291 LEGNPLSERTLQALRE-----ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS----LSGQIPQCLGNSTLETLDL 528
                + +   +    E  +   +L   +  +  N         QI   L     +   L
Sbjct: 346 REGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDE-AL 404

Query: 529 RMNNFQ 534
           R N F 
Sbjct: 405 RANTFA 410

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (327), Expect = 2e-31
 Identities = 84/420 (20%), Positives = 143/420 (34%), Gaps = 98/420 (23%)

Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-LPPHMVSFSISNNSLTGEIPSSF 494
           E       +  +          L++  + L  +LPD LP H+ +  I +N+LT  +P+  
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT-SLPALP 80

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
             L   + L++S N L+  +P        L      + +              L  L + 
Sbjct: 81  PEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIF 129

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFA 613
           GN L   LP        LQ L V +N L+  +P       L  L    N  + SLP   +
Sbjct: 130 GNQLTS-LPVLPPG---LQELSVSDNQLA-SLPALPSE--LCKLWAYNNQLT-SLPMLPS 181

Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE-LQVLILR 672
               L  L+++ N+L   LP        L  L   NN++       L  L   L+ LI+ 
Sbjct: 182 G---LQELSVSDNQLAS-LPTLPSE---LYKLWAYNNRLTS-----LPALPSGLKELIVS 229

Query: 673 SNRFWGPIGDTKTRVP--FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730
            NR         T +P    +L+ +  S N+LT                           
Sbjct: 230 GNRL--------TSLPVLPSELKELMVSGNRLT--------------------------- 254

Query: 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNIS 790
            LP                        +   ++ +  N+  R +PE +  L+S  ++N+ 
Sbjct: 255 SLPML---------------------PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLE 292

Query: 791 HNNLTGCIPSSLRNLTELESLD---LSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
            N L+     +LR +T         +  +      P +  +L+  +   L   +   P P
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (322), Expect = 1e-30
 Identities = 70/276 (25%), Positives = 104/276 (37%), Gaps = 42/276 (15%)

Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493
              L++  + LT++      ++  L +  N+L  SLP LPP + +  +S N LT  +P  
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT-SLPVL 99

Query: 494 FCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
              L  +         L            L  L +  N    S+P        L  L +S
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLT-SLPVLPPG---LQELSVS 149

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFA 613
            N L   LP   +    L  L   NN L+  +P       LQ L +  N  + SLP   +
Sbjct: 150 DNQLAS-LPALPSE---LCKLWAYNNQLT-SLPMLPSG--LQELSVSDNQLA-SLPTLPS 201

Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRS 673
           +   L  L    NRL   LP        L+ L V  N++  + P    +  EL+ L++  
Sbjct: 202 E---LYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLP---VLPSELKELMVSG 250

Query: 674 NRFWGPIGDTKTRVP--FPKLRIMDCSHNQLTGVLP 707
           NR         T +P     L  +    NQLT  LP
Sbjct: 251 NRL--------TSLPMLPSGLLSLSVYRNQLT-RLP 277

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 4e-21
 Identities = 54/301 (17%), Positives = 98/301 (32%), Gaps = 39/301 (12%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
            P L++L+++ N        +        L  L   +   T S+P         L  L +
Sbjct: 140 PPGLQELSVSDNQL------ASLPALPSELCKLWAYNNQLT-SLPMLPSG----LQELSV 188

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
           S N  +  +P+  S L++L   + +       +PA        L  L +S N  +  +P 
Sbjct: 189 SDNQ-LASLPTLPSELYKLWAYNNRLT----SLPALPSG----LKELIVSGNRLT-SLPV 238

Query: 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWL 290
             S L+    L +  N     +P         L  L +  N  +  +P S  +L     +
Sbjct: 239 LPSELK---ELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLG---LAYNELIGSIPSSIFELLNLTEIYLS---FSN 344
           NLE N    +       +T         + ++    S P     L      +L       
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 345 FSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRT 404
            + +   + F +  N    SL    LS +     ++ F    +  L+        + LR 
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAED---EALRA 406

Query: 405 Q 405
            
Sbjct: 407 N 407

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 3e-36
 Identities = 54/358 (15%), Positives = 122/358 (34%), Gaps = 64/358 (17%)

Query: 307 NLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS 366
           + +    L    +  +      + +           ++ +     +  A   N ++ + +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHY-----NADRNRWHSAWRQANSNNPQIETRT 64

Query: 367 NISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWM 426
             +L  +  L  +++ P   AL+L +  + +FPD       L+ + +    +   +P   
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-MELPD-- 121

Query: 427 WDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSL 486
                              ++       LE L L  N L+                    
Sbjct: 122 -------------------TMQQF--AGLETLTLARNPLR-------------------- 140

Query: 487 TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST----------LETLDLRMNNFQGS 536
              +P+S  +L+ ++ L +       ++P+ L ++           L++L L     + S
Sbjct: 141 --ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197

Query: 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQ 595
           +P + A    L  L++  + L   L P++ +  KL+ LD+         P   G  + L+
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 596 VLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
            L ++  +   +LP    +   L  L+L G      LP  +       ++ V  +   
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (349), Expect = 6e-36
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 18/260 (6%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
              +   L             P    L L        +       +   L  + + +   
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPL--PQFPDQAF-RLSHLQHMTIDAAGL 116

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN- 209
              +P ++      L  L L+ N  +  +P+S ++L++LR L +++   + ++P  L + 
Sbjct: 117 M-ELPDTMQQ-FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 210 -------NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
                   +  L  L L        +P+S +NLQ L  L + ++     +  ++ + + +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPK 230

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322
           L  LDL       + P  F     L  L L+  + +  +P     LTQL  L L     +
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 323 GSIPSSIFELLNLTEIYLSF 342
             +PS I +L     I +  
Sbjct: 291 SRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 3e-33
 Identities = 48/281 (17%), Positives = 102/281 (36%), Gaps = 25/281 (8%)

Query: 136 QFPSLTLLDL--CSCNFTGSIPPSLGN-NITQLAYLDLSINSFIGHIPSSFSNLHQLRHL 192
           +  +     +   +     +    L +        L+L     +   P     L  L+H+
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHM 109

Query: 193 DLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI 252
            + +   + ++P ++      L  L L+ N     +P+S ++L +L  L +     + E+
Sbjct: 110 TIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 253 PASLGN--------NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM 304
           P  L +         +  L  L L   G    +P+S +NLQ L  L +  +     +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 305 FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVEL-YDFAKLKNLKVL 363
             +L +L  L L     + + P        L  + L   + S  + L  D  +L  L+ L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL--KDCSNLLTLPLDIHRLTQLEKL 282

Query: 364 SLS-NISLSVSTKLTAN-SSFPNLSALDLSACNISEFPDNL 402
            L   ++L   ++L +  +  P    + +     ++   + 
Sbjct: 283 DLRGCVNL---SRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (328), Expect = 3e-33
 Identities = 56/404 (13%), Positives = 106/404 (26%), Gaps = 101/404 (25%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
               L              L     +    D +      H     +N +  +        
Sbjct: 13  GRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRA 67

Query: 199 FVGKIPASLGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
                   L +        L+L S       P     L  L ++ +D    + E+P ++ 
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
                L  L L+ N     +P+S ++L +L  L++     + ++P+   +          
Sbjct: 125 -QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--------- 173

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVEL-YDFAKLKNLKVLSLSNISLSVSTKL 376
                         L+NL  + L ++       L    A L+NLK L + N         
Sbjct: 174 ------DASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRN--------- 215

Query: 377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
                             +S     +    +LE LDL         P             
Sbjct: 216 ----------------SPLSALGPAIHHLPKLEELDLRGCTALRNYPP------------ 247

Query: 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
                             L+ L L                       ++L   +P     
Sbjct: 248 ---------IFGGR--APLKRLILK--------------------DCSNLL-TLPLDIHR 275

Query: 497 LSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQ 539
           L+ ++ LDL       ++P  +        + +   + Q  + Q
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (302), Expect = 1e-29
 Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 21/240 (8%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L+L    L    P     F L  L+ + +        ++      QF  L  L L     
Sbjct: 86  LELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGL--MELPDTMQ-QFAGLETLTLARNPL 139

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSN---------LHQLRHLDLQSNNFVG 201
             ++P S+ + + +L  L +     +  +P   ++         L  L+ L L+      
Sbjct: 140 R-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR- 196

Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
            +PAS+ N +  L  L + ++  S  +  +  +L +L  LDL     +   P   G    
Sbjct: 197 SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RA 253

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
            L  L L        +P     L QL  L+L     + ++P +   L     + +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 1e-26
 Identities = 58/398 (14%), Positives = 108/398 (27%), Gaps = 102/398 (25%)

Query: 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
              E L+   ++      D+         ++ +          N ++ Q    +  +L  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALK- 69

Query: 513 QIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQ 572
                L ++T                           L L    L    P        LQ
Sbjct: 70  ATADLLEDATQP---------------------GRVALELRSVPLPQ-FPDQAFRLSHLQ 107

Query: 573 FLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
            + +    L  ++P+ +   + L+ L +  N    +LP + A    L  L++        
Sbjct: 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165

Query: 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP--- 688
           LP  L +                        L+ LQ L L               +P   
Sbjct: 166 LPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGI--------RSLPASI 202

Query: 689 --FPKLRIMDCSHNQLTGVLP-LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745
                L+ +   ++ L+ + P + +L                                  
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPK-------------------------------- 230

Query: 746 MKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL 805
                      L      DL      R  P + G    LK L +   +    +P  +  L
Sbjct: 231 -----------LEEL---DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           T+LE LDL       R+P+ +A L    ++ +  +   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  138 bits (350), Expect = 5e-35
 Identities = 87/383 (22%), Positives = 150/383 (39%), Gaps = 40/383 (10%)

Query: 163 TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN 222
             + Y+DLS+NS      +SFS L  L+ L ++       I  +    ++ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 223 SFSGHIPSSFSNLQQLCYLDLDDNHF-VGEIPASLGNNITQLAYLDLSSNGFSGHIPSS- 280
            F      +F+ L  L  L L   +     +  +    +T L  L L  N      P+S 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNLT--QLSFLGLAYNELI--------GSIPSSIF 330
           F N+++   L+L +N       +   N      + L L+   L              + F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSA--- 387
           +  ++T + LS + F  S+    F  +   K+ SL   +         +++F +      
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 388 ----------LDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436
                      DLS   I     ++      LE L L++N+I  +I    +  G+  L++
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFW-GLTHLLK 327

Query: 437 LDLSRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLP----DLPPHMVSFSISNNSLT 487
           L+LS+NFL SI     ++L    LE L L  N ++ +L        P++   ++  N L 
Sbjct: 328 LNLSQNFLGSIDSRMFENLD--KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

Query: 488 GEIPSSFCNLSSIQYLDLSNNSL 510
                 F  L+S+Q + L  N  
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (335), Expect = 4e-33
 Identities = 86/404 (21%), Positives = 149/404 (36%), Gaps = 37/404 (9%)

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
             + Y+DLS NS +    +SFS LQ L +L ++       I  +    ++ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKI--PDMFTNLTQLSFLGLAYNELIGSIPSSI 329
            F      +F+ L  L  L L   N  G +   + F  LT L  L L  N +    P+S 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 330 FELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSAL 388
           F  +     + L+F+    S+   D    +      L   S+++                
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL---------------Q 193

Query: 389 DLSACNISEFPD-NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI 447
           D++   +      N      +  LDLS N     +    +D    T I+  +  N     
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 448 DHLPWKNLEYLHLDSNSLQGSLPDLP-PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
                 N +           +   L    + +  +S + +   + S F + + ++ L L+
Sbjct: 254 SSFGHTNFKDPD------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 507 NNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPP 563
            N ++ +I      G + L  L+L  N    SI     +   KL  L LS NH+   L  
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGD 364

Query: 564 -SLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNF 604
            S      L+ L +  N L   +P+ +    ++LQ + +  N +
Sbjct: 365 QSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (304), Expect = 4e-29
 Identities = 78/413 (18%), Positives = 125/413 (30%), Gaps = 78/413 (18%)

Query: 468 SLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ--CLGNSTLET 525
            +P+LP H+    +S NS+     +SF  L  +Q+L +   +    I      G S+L  
Sbjct: 24  QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 526 LDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPP--SLTNCVKLQFLDVGNNNLS 582
           L L  N F   +      G   L  L L+  +L+G +           L+ L + +NN+ 
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 583 GQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAK--SCVLVSLNLNGNRL--------KG 630
              P           VLD+  N       +            L L+   L          
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 631 PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLI-------------LRSNRFW 677
               +      +  LD+  N   ++        +    +                   F 
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
            P   T   +    ++  D S +++                             L     
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF---------------------------ALL---- 291

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
             +S+F              T    + L+ N   +        L  L  LN+S N L   
Sbjct: 292 --KSVFSH-----------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIPGG 849
                 NL +LE LDLS N +   +  Q    L  L  L L  NQL+  +P G
Sbjct: 339 DSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKS-VPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (277), Expect = 1e-25
 Identities = 75/306 (24%), Positives = 107/306 (34%), Gaps = 29/306 (9%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  L  L L   + +G+ +S  F     SL +L L   N     P S   N+ +   LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 171 SINSFIGHIPS-SFSNLH--QLRHLDLQSN-------NFVGKIPASLGNNITQLAYLDLS 220
           + N  +  I      N        L L S         ++G          T +  LDLS
Sbjct: 162 TFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI--------------TQLAYL 266
            N F   +   F +      +          + +S G+                + +   
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
           DLS +     + S FS+   L  L L  N       + F  LT L  L L+ N L GSI 
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339

Query: 327 SSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
           S +FE L  L  + LS  N   ++    F  L NLK L+L    L  S          +L
Sbjct: 340 SRMFENLDKLEVLDLS-YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSL 397

Query: 386 SALDLS 391
             + L 
Sbjct: 398 QKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 66/305 (21%), Positives = 103/305 (33%), Gaps = 36/305 (11%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS----GFTDQFPSLTLLDL- 145
           L L+   L G + S +    L  L  L L  N      I       F        +LDL 
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-----NIKKIQPASFFLNMRRFHVLDLT 162

Query: 146 -----CSCN--FTGSIPPSLGN-NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
                  C                ++ +   D++          +      +  LDL  N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 198 NFVGKIP------------ASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ--QLCYLDL 243
            F   +              SL  + +          +F      +F  L+   +   DL
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
             +     +  S+ ++ T L  L L+ N  +    ++F  L  LL LNL  N        
Sbjct: 283 SKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 304 MFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKV 362
           MF NL +L  L L+YN  I ++    F  L NL E+ L  +N   SV    F +L +L+ 
Sbjct: 342 MFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALD-TNQLKSVPDGIFDRLTSLQK 399

Query: 363 LSLSN 367
           + L  
Sbjct: 400 IWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 63/288 (21%)

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP----SLVNCQYLEVLDV 647
           + +  +D+ +N+ +     +F++   L  L +        +       L +   L +L +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS---LIILKL 86

Query: 648 GNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP 707
             NQ         + L  L+VL L      G +       P   L ++    N +  + P
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 708 LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS 767
                                            S FL            +  F  +DL+ 
Sbjct: 147 --------------------------------ASFFLN-----------MRRFHVLDLTF 163

Query: 768 NRFQ----------RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817
           N+ +          +     + +L+S+   +++   L      +    T + +LDLS N 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 818 LAGRIP---TQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSG 862
               +        +   +  L LSN+   G   G   F    N ++ G
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  135 bits (341), Expect = 8e-35
 Identities = 72/324 (22%), Positives = 121/324 (37%), Gaps = 52/324 (16%)

Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
              LDLQ+N    +I      N+  L  L L +N  S   P +F+ L +L  L L  N  
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI--PDMFT 306
             E+P  +      L  L +  N  +    S F+ L Q++ + L  N           F 
Sbjct: 113 K-ELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 307 NLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS 366
            + +LS++ +A    I +IP  +    +LTE++L  +  +  V+      L NL  L LS
Sbjct: 169 GMKKLSYIRIADTN-ITTIPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 367 NISLSVSTKLTANS--SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPS 424
             S+   + +   S  + P+L  L L+   + + P  L     ++++ L  N I      
Sbjct: 225 FNSI---SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI------ 275

Query: 425 WMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNN 484
                   + I    S +F     +    +   + L SN +Q              I   
Sbjct: 276 --------SAIG---SNDFCPPGYNTKKASYSGVSLFSNPVQYW-----------EIQ-- 311

Query: 485 SLTGEIPSSFCNLSSIQYLDLSNN 508
                 PS+F  +     + L N 
Sbjct: 312 ------PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (298), Expect = 3e-29
 Identities = 62/275 (22%), Positives = 104/275 (37%), Gaps = 25/275 (9%)

Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
            +     L  L  L L  N    SKIS G       L  L L S N    +P  +     
Sbjct: 68  KDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYL-SKNQLKELPEKMPKT-- 122

Query: 164 QLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNF-VGKIPASLGNNITQLAYLDLSS 221
            L  L +  N  I  +    F+ L+Q+  ++L +N      I       + +L+Y+ ++ 
Sbjct: 123 -LQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 222 NSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
            + +  IP     +L +   L LD N    ++ A+    +  LA L LS N  S     S
Sbjct: 181 TNIT-TIPQGLPPSLTE---LHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-------ELL 333
            +N   L  L+L  N  V K+P    +   +  + L  N  I +I S+ F       +  
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKA 293

Query: 334 NLTEIYLSFSNFS-GSVELYDFAKLKNLKVLSLSN 367
           + + + L  +      ++   F  +     + L N
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 2e-23
 Identities = 54/260 (20%), Positives = 94/260 (36%), Gaps = 42/260 (16%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L L  + +   I   +    L +L +L L+ N     ++         +L  L +     
Sbjct: 81  LILINNKIS-KISPGA-FAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEI 133

Query: 151 TGSIPPSLGNNITQLAYLDLSINSF-IGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASL- 207
           T  +  S+ N + Q+  ++L  N      I + +F  + +L ++ +   N    IP  L 
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP 191

Query: 208 ---------GNNIT-----------QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247
                    GN IT            LA L LS NS S     S +N   L  L L++N 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 248 FVGEIPASLGNNITQLAYLDLSSNGFSG------HIPSSFSNLQQLLWLNLEYNNF-VGK 300
            V ++P  L ++   +  + L +N  S         P   +       ++L  N     +
Sbjct: 252 LV-KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 301 I-PDMFTNLTQLSFLGLAYN 319
           I P  F  +   + + L   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 68/377 (18%), Positives = 113/377 (29%), Gaps = 91/377 (24%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
           +L  +      L+  +P DLPP      + NN +T      F NL ++  L L NN +S 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 513 QIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
             P        LE L L  N  +  +P+   K   L  LR+  N +            ++
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQM 147

Query: 572 QFLDVGNNNL-SGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
             +++G N L S  I      G   L  + +   N +            L  L+L+GN++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKI 204

Query: 629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP 688
                 SL     L  L +  N I                  + +               
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISA----------------VDNGSLAN---------- 238

Query: 689 FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKG 748
            P LR +  ++N+L                      V  G                    
Sbjct: 239 TPHLRELHLNNNKLV--------------------KVPGGLADHKY-------------- 264

Query: 749 IDLQMERILTTFATIDLSSNRFQR------KIPEVVGKLNSLKSLNISHNNLTGCI--PS 800
             +Q          + L +N            P    K  S   +++  N +      PS
Sbjct: 265 --IQ---------VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 801 SLRNLTELESLDLSSNK 817
           + R +    ++ L + K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 65/307 (21%), Positives = 104/307 (33%), Gaps = 69/307 (22%)

Query: 545 CKLTYLRLSGNHLE---GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMR 600
           C L  ++ S   LE     LPP          LD+ NN ++        N   L  L + 
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTAL------LDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLK---GPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
            N  S   P  FA    L  L L+ N+LK     +P +L      + L V  N+I     
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL------QELRVHENEITKVRK 138

Query: 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM 717
              + L ++ V+ L +N       +        KL  +  +   +T +            
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---------- 188

Query: 718 MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEV 777
                                                 +  +   + L  N+   K+   
Sbjct: 189 -------------------------------------GLPPSLTELHLDGNKIT-KVDAA 210

Query: 778 V-GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836
               LN+L  L +S N+++     SL N   L  L L++NKL  ++P  LA   Y+ V+ 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

Query: 837 LSNNQLE 843
           L NN + 
Sbjct: 270 LHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 61/363 (16%), Positives = 114/363 (31%), Gaps = 86/363 (23%)

Query: 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLSGNHL 557
            ++ +  S+  L  ++P+ L   T   LDL+ N     I   + K  K L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDT-ALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCV 617
               P +    VKL+ L +  N L  ++PE +  + LQ L +  N  +      F     
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT-LQELRVHENEITKVRKSVFNGLNQ 146

Query: 618 LVSLNLNGNRLK-GPLPP-SLVNCQYLEVLDVGNNQI----DDTFPYWLDVLLELQVLIL 671
           ++ + L  N LK   +   +    + L  + + +  I        P        L  L L
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-------SLTELHL 199

Query: 672 RSNRFWGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725
             N+         T+V          L  +  S N ++ V       S            
Sbjct: 200 DGNKI--------TKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLAN--------- 238

Query: 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK 785
                                                + L++N+  + +P  +     ++
Sbjct: 239 -------------------------------TPHLRELHLNNNKLVK-VPGGLADHKYIQ 266

Query: 786 SLNISHNNLTG------CIPSSLRNLTELESLDLSSNKLAGRI--PTQLASLNYLSVLNL 837
            + + +NN++       C P           + L SN +      P+    +   + + L
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

Query: 838 SNN 840
            N 
Sbjct: 327 GNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 49/309 (15%), Positives = 92/309 (29%), Gaps = 68/309 (22%)

Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFS 605
              L L  N +         N   L  L + NN +S   P        L+ L +  N   
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTF--PYWLDVL 663
             LP+   K+  L  L ++ N +             + V+++G N +  +         +
Sbjct: 114 -ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 664 LELQVLILRSNRFWGPIGDTKTRVP---FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG 720
            +L  + +             T +P    P L  +    N++T V       S K     
Sbjct: 171 KKLSYIRIADTNI--------TTIPQGLPPSLTELHLDGNKITKVDA----ASLKG---- 214

Query: 721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
                                               L   A + LS N         +  
Sbjct: 215 ------------------------------------LNNLAKLGLSFNSISAVDNGSLAN 238

Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL------AGRIPTQLASLNYLSV 834
              L+ L++++N L   +P  L +   ++ + L +N +          P         S 
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 835 LNLSNNQLE 843
           ++L +N ++
Sbjct: 298 VSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            +  S    ++ +P+ +        L++ +N +T       +NL  L +L L +NK++  
Sbjct: 35  VVQCSDLGLEK-VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGG 849
            P   A L  L  L LS NQL+  +P  
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKE-LPEK 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (338), Expect = 1e-34
 Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 46/333 (13%)

Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
           I     N  +     + D+    +  ASL  +   +  LDLS N  S    +  +   +L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
             LNL  N    +  D   +L+ L  L L  N +       +    ++  ++ + +N   
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN--- 110

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQH 406
                            +S +S          S       + L+   I+   D     + 
Sbjct: 111 -----------------ISRVSC---------SRGQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSN-- 463
           +++ LDL  N+I   +          TL  L+L  NF+  +     +  L+ L L SN  
Sbjct: 145 RVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203

Query: 464 -SLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST 522
             +          +   S+ NN L   I  +     ++++ DL  N       +   +  
Sbjct: 204 AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
                +     +  +   N + C +  L   G 
Sbjct: 262 QRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 3e-34
 Identities = 54/360 (15%), Positives = 114/360 (31%), Gaps = 50/360 (13%)

Query: 156 PSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215
             +  N  +     ++ +S    + S   +   ++ LDL  N    +I A+     T+L 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLE 61

Query: 216 YLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG 275
            L+LSSN           +L  L  LDL++N+   E+          +  L  ++N  S 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-QELLVG-----PSIETLHAANNNISR 113

Query: 276 HIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNL 335
              S     +    + L  N             +++ +L L  NE I ++  +       
Sbjct: 114 VSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL----- 164

Query: 336 TEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI 395
                              A    L+ L+L    +     +     F  L  LDLS+  +
Sbjct: 165 ------------------AASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKL 203

Query: 396 SEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH----LP 451
           +      ++   +  + L  N++   I   +       L   DL  N             
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKL-VLIEKALR--FSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
            + ++ +   +        +    + +          ++P+ F +    + + L ++   
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD----RLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (326), Expect = 5e-33
 Identities = 53/357 (14%), Positives = 117/357 (32%), Gaps = 48/357 (13%)

Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNL 360
           I ++  N  +     +  + L  ++ S      N+ E+ LS +  S  +   D A    L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
           ++L+LS+        L       +LS                     L  LDL+ N +  
Sbjct: 61  ELLNLSS------NVLYETLDLESLS--------------------TLRTLDLNNNYV-Q 93

Query: 421 RIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP----PHM 476
            +          ++  L  + N ++ +     +  + ++L +N +   L DL       +
Sbjct: 94  ELLV------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRV 146

Query: 477 VSFSISNNSLTG-EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQG 535
               +  N +          +  ++++L+L  N +   +   +  + L+TLDL  N    
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA- 204

Query: 536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQ 595
            +         +T++ L  N L   +  +L     L+  D+  N           +   +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 596 VLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
           V  +          Q   +  V    +      +    P         ++ +G++  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA-----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 2e-32
 Identities = 55/326 (16%), Positives = 110/326 (33%), Gaps = 37/326 (11%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
             R +   +  +     +  +       ++  LDL     +  I  +     T+L  L+L
Sbjct: 9   GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSN------------------NFVGKIPASLGNNIT 212
           S N  +        +L  LR LDL +N                  N + ++  S G    
Sbjct: 66  SSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-- 121

Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
               + L++N  +           ++ YLDL  N       A L  +   L +L+L  N 
Sbjct: 122 -KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL 332
               +        +L  L+L  N     +   F +   ++++ L  N+L+  I  ++   
Sbjct: 181 IY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 333 LNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSA 392
            NL    L  + F        F+K + ++ ++   +   ++ +     + P L       
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYC 295

Query: 393 CNISEFPDNLRTQHQLELLDLSENQI 418
           C      ++L       L+ L  +  
Sbjct: 296 C------EDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 3e-24
 Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 29/282 (10%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L+LS       +     L  L  LR L+L  N     ++  G     PS+  L   + N 
Sbjct: 63  LNLS----SNVLYETLDLESLSTLRTLDLNNNYV--QELLVG-----PSIETLHAANNNI 111

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
           +  +  S G        + L+ N              ++++LDL+ N       A L  +
Sbjct: 112 S-RVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS 270
              L +L+L  N     +        +L  LDL  N     +      +   + ++ L +
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRN 223

Query: 271 NGFSGHIPSSFSNLQQLLWLNLEYNNFV-GKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
           N     I  +    Q L   +L  N F  G + D F+   ++  +     + +       
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 330 FELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS 371
             +  L           G+    D       ++++L +    
Sbjct: 283 CTVPTLGHY--------GAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 52/318 (16%), Positives = 105/318 (33%), Gaps = 55/318 (17%)

Query: 536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-L 594
           +I +    G +    +++ + L+  L     +   ++ LD+  N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
           ++L++  N               L +L+LN N ++      L+    +E L   NN I  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 655 TFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPL 708
                       + + L +N+         T +         +++ +D   N++  V   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKI--------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 709 WYLESFKAMMH---GNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDL 765
               S   + H     N                     +     D++ + +     T+DL
Sbjct: 163 ELAASSDTLEHLNLQYNF--------------------IY----DVKGQVVFAKLKTLDL 198

Query: 766 SSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ 825
           SSN+    +         +  +++ +N L   I  +LR    LE  DL  N        +
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLR 255

Query: 826 LASLNYLSVLNLSNNQLE 843
                   V  ++   ++
Sbjct: 256 DFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           I E+    N  K   ++ ++L   + S  ++   ++ LDLS N L+      LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 834 VLNLSNNQLEGPIP 847
           +LNLS+N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  132 bits (334), Expect = 4e-34
 Identities = 63/256 (24%), Positives = 101/256 (39%), Gaps = 12/256 (4%)

Query: 90  GLDLSCSWLH-GNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC 148
           G ++ C+     ++P+           +L L  N      +  G  D+   LT L L S 
Sbjct: 9   GTEIRCNSKGLTSVPTG----IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSN 62

Query: 149 NFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
             +            T L YLDLS N  +  + S+F  L QL HLD Q +N       S+
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 208 GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267
             ++  L YLD+S           F+ L  L  L +  N F       +   +  L +LD
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPS 327
           LS        P++F++L  L  LN+ +NNF       +  L  L  L  + N ++ +   
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

Query: 328 SIFELL--NLTEIYLS 341
              +    +L  + L+
Sbjct: 241 QELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (282), Expect = 3e-27
 Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 23/259 (8%)

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN--FV 298
           +  +       +P  + ++ T    L+L SN         F  L QL  L+L  N   F 
Sbjct: 12  IRCNSKGLT-SVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
           G         T L +L L++N +I ++ S+   L  L  +    SN     E   F  L+
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 359 NLKVLSLSNISLSVSTKLTAN--SSFPNLSALDLSACNISEF--PDNLRTQHQLELLDLS 414
           NL  L +S+    V         +   +L  L ++  +  E   PD       L  LDLS
Sbjct: 127 NLIYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 415 ENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL---PWKNLEYLHLDSNSLQ----G 467
           + Q+  ++    ++  + +L  L++S N   S+D        +L+ L    N +      
Sbjct: 184 QCQL-EQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 468 SLPDLPPHMVSFSISNNSL 486
            L   P  +   +++ N  
Sbjct: 242 ELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 4e-25
 Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 22/246 (8%)

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS-VSTKLTANSSF 382
           S+P+ I    + T + L  +    S+    F KL  L  LSLS+  LS       ++   
Sbjct: 21  SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442
            +L  LDLS   +     N     QLE LD   + +  ++  +   + +  LI LD+S  
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHT 136

Query: 443 FLTSI-----DHLPWKNLEYLHLDSNSLQGSLPD----LPPHMVSFSISNNSLTGEIPSS 493
                     + L   +LE L +  NS Q +          ++    +S   L    P++
Sbjct: 137 HTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 494 FCNLSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC--KLTY 549
           F +LSS+Q L++S+N+    +        ++L+ LD  +N+   +  +   +     L +
Sbjct: 195 FNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAF 252

Query: 550 LRLSGN 555
           L L+ N
Sbjct: 253 LNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 9e-21
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
           +   +  +S  L  S+P  +P       + +N L       F  L+ +  L LS+N LS 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 513 QIPQC---LGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL-TNC 568
           +        G ++L+ LDL  N    ++        +L +L    ++L+     S+  + 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 569 VKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSL-PQTFAKSCVLVSLNLNG 625
             L +LD+ + +        +  G S+L+VL M  N+F  +  P  F +   L  L+L+ 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
            +L+   P +  +   L+VL++ +N       +    L  LQVL    N 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 41/237 (17%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID--DTFPYWLDVLLELQVLILRSNR 675
              L L  N+L+            L  L + +N +               L+ L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 676 FWGPIGDTKTRVP-----FPKLRIMDCSHNQLTGVLPLWYLESFKAMMH---GNNNSVEV 727
                      +        +L  +D  H+ L  +       S + +++    + ++   
Sbjct: 90  V--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV-GKLNSLKS 786
                 G S+             L+          + ++ N FQ      +  +L +L  
Sbjct: 142 FNGIFNGLSS-------------LE---------VLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 787 LNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           L++S   L    P++  +L+ L+ L++S N            LN L VL+ S N + 
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 41/234 (17%), Positives = 69/234 (29%), Gaps = 56/234 (23%)

Query: 615 SCVLVSLNLNGNRLK---GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLIL 671
           SC    +  N   L      +P S         L++ +N++        D L +L  L L
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMR 731
            SN        +++      L+ +D S N +                             
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---------------------------T 92

Query: 732 LPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV-GKLNSLKSLNIS 790
           +  +                     L     +D   +  ++     V   L +L  L+IS
Sbjct: 93  MSSNFLG------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQLE 843
           H +           L+ LE L ++ N             L  L+ L+LS  QLE
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT--GCIPSSLRNLTELESLDL 813
           I ++   ++L SN+ Q     V  KL  L  L++S N L+  GC   S    T L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP 850
           S N +   + +    L  L  L+  ++ L+       
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
           S   +  +   LT  +P+ +   +    L+L SNKL          L  L+ L+LS+N L
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 843 EGPIPGGPQFN 853
                      
Sbjct: 65  SFKGCCSQSDF 75

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  130 bits (329), Expect = 3e-33
 Identities = 71/375 (18%), Positives = 125/375 (33%), Gaps = 83/375 (22%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP-SSFSNLHQLRHLDLQSN 197
            L ++         ++P  +  + T    LDL  N  I  +    F  L  L  L L   
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTT---LLDLQNND-ISELRKDDFKGLQHLYALVLV-- 86

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
                      N I+++                +FS L++L  L +  NH V EIP +L 
Sbjct: 87  ----------NNKISKIH-------------EKAFSPLRKLQKLYISKNHLV-EIPPNLP 122

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN--FVGKIPDMFTNLTQLSFLG 315
           ++   L  L +  N         FS L+ +  + +  N     G  P  F  L  L++L 
Sbjct: 123 SS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLR 178

Query: 316 LAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTK 375
           ++  +L   IP  + E   L E++L  +    ++EL D  +   L  L L +  +     
Sbjct: 179 ISEAKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI---RM 231

Query: 376 LTANS--SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
           +   S    P L  L L    +S  P  L     L+++ L  N I  ++           
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVND------- 283

Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493
                    F      +       + L +N +             + +         P++
Sbjct: 284 ---------FCPVGFGVKRAYYNGISLFNNPVP-----------YWEVQ--------PAT 315

Query: 494 FCNLSSIQYLDLSNN 508
           F  ++    +   N 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (281), Expect = 6e-27
 Identities = 57/267 (21%), Positives = 89/267 (33%), Gaps = 24/267 (8%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  L  L L  N    SKI          L  L +   +    IPP+L ++   L  L +
Sbjct: 77  LQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS---LVELRI 130

Query: 171 SINSFIGHIP-SSFSNLHQLRHLDLQSNNF-VGKIPASLGNNITQLAYLDLSSNSFSGHI 228
             N  I  +P   FS L  +  +++  N            + +  L YL +S    +G  
Sbjct: 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIP 188

Query: 229 PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLL 288
                 L +   L LD N     I        ++L  L L  N        S S L  L 
Sbjct: 189 KDLPETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 289 WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-------ELLNLTEIYLS 341
            L+L+ N    ++P    +L  L  + L  N  I  +  + F       +      I L 
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 342 FSNFS-GSVELYDFAKLKNLKVLSLSN 367
            +      V+   F  + +   +   N
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 9e-21
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 24/261 (9%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
           +L  +      L+ ++P ++ P      + NN ++      F  L  +  L L NN +S 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 513 QIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
              +       L+ L +  N+    IP        L  LR+  N +        +    +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 572 QFLDVGNNNLSGQI--PECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
             +++G N L      P       L  L +     +G           L  L+L+ N+++
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQ 206

Query: 630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP- 688
                 L+    L  L +G+NQI       L  L  L+ L L +N+         +RVP 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--------SRVPA 258

Query: 689 ----FPKLRIMDCSHNQLTGV 705
                  L+++    N +T V
Sbjct: 259 GLPDLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 25/213 (11%)

Query: 97  WLHGN----IPSNSSLFFLPRLRKLNLAFNDFNGSKISSG-FTDQFPSLTLLDLCSCNFT 151
            +H N    +P       L  +  + +  N    S    G F      L  L +     T
Sbjct: 129 RIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDG--LKLNYLRISEAKLT 185

Query: 152 GSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
             IP  L   + +   L L  N  I  I         +L  L L  +N +  I     + 
Sbjct: 186 -GIPKDLPETLNE---LHLDHNK-IQAIELEDLLRYSKLYRLGL-GHNQIRMIENGSLSF 239

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS------LGNNITQLA 264
           +  L  L L +N  S  +P+   +L+ L  + L  N+   ++  +       G       
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 265 YLDLSSNGFSGHI--PSSFSNLQQLLWLNLEYN 295
            + L +N        P++F  +   L +     
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 9e-19
 Identities = 62/310 (20%), Positives = 99/310 (31%), Gaps = 76/310 (24%)

Query: 545 CKLTYLRLSGNHLE---GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMR 600
           C L  ++ S   L+     + P  T       LD+ NN++S    +       L  L + 
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTT------LLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
            N  S    + F+    L  L ++ N L   +PP+L     L  L + +N+I        
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF 143

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVPFP-------KLRIMDCSHNQLTGVLPLWYLES 713
             L  +  + +  N              F        KL  +  S  +LTG+        
Sbjct: 144 SGLRNMNCIEMGGNPL--------ENSGFEPGAFDGLKLNYLRISEAKLTGIPK------ 189

Query: 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRK 773
                                                     +  T   + L  N+ Q  
Sbjct: 190 -----------------------------------------DLPETLNELHLDHNKIQAI 208

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
             E + + + L  L + HN +      SL  L  L  L L +NKL+ R+P  L  L  L 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 834 VLNLSNNQLE 843
           V+ L  N + 
Sbjct: 268 VVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 61/359 (16%), Positives = 113/359 (31%), Gaps = 77/359 (21%)

Query: 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLSGNHL 557
            ++ +  S+  L   +P+ +   T   LDL+ N+    + + + KG + L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDT-TLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCV 617
                 + +   KLQ L +  N+L  +IP  L  S+L  L +  N         F+    
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 618 LVSLNLNGNRLK-GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRF 676
           +  + + GN L+     P   +   L  L +   ++        D+   L  L L  N+ 
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNELHLDHNKI 205

Query: 677 WGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730
                     +       + KL  +   HNQ+  +       S                 
Sbjct: 206 --------QAIELEDLLRYSKLYRLGLGHNQIRMIEN----GSLSF-------------- 239

Query: 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNIS 790
                                     L T   + L +N+  R +P  +  L  L+ + + 
Sbjct: 240 --------------------------LPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 791 HNNLTG------CIPSSLRNLTELESLDLSSNKLAGRI--PTQLASLNYLSVLNLSNNQ 841
            NN+T       C             + L +N +      P     +     +   N +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  134 bits (340), Expect = 4e-33
 Identities = 108/485 (22%), Positives = 175/485 (36%), Gaps = 44/485 (9%)

Query: 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS 171
           PR + L+L+ N    S++          L +L L       S+   +      L YLD+S
Sbjct: 52  PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108

Query: 172 INSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS 231
            N  + +I      +  LRHLDL  N+F          N+T+L +L LS+  F       
Sbjct: 109 HNR-LQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 232 FSNLQQLC-YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG-FSGHIPSSFSNLQQLLW 289
            ++L   C  LDL   H  G    SL    T + +L    N  FS  +  S + L  L  
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 290 LNLEYNNF----VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI-YLSFSN 344
            N++ N+     +       T    L  + L + E        +F+      + YL+  N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 345 --FSGSVELYDFAKLKN-LKVLSLSNISLSVSTKLTAN--SSFPNLSALDLSACNISEFP 399
              +  ++  +F   +  LK L + ++   V         S F  ++   LS  +     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 400 DN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK--NLE 456
                +      L+ ++N              +  L  L L RN L +   +     N+ 
Sbjct: 346 MVCPPSPSSFTFLNFTQNVF-TDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNL-SSIQYLDLSNNSLSGQIP 515
            L     SL                  NSL        C    SI  L+LS+N L+G + 
Sbjct: 404 SLETLDVSL------------------NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 516 QCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLD 575
           +CL    ++ LDL  N    SIP+       L  L ++ N L+            LQ++ 
Sbjct: 446 RCL-PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 576 VGNNN 580
           + +N 
Sbjct: 504 LHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (335), Expect = 1e-32
 Identities = 89/477 (18%), Positives = 168/477 (35%), Gaps = 32/477 (6%)

Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
            + L L  N+   ++     + +++L  L LS N         F   Q L YLD+  N  
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 249 VGEIPASLGNNITQLAYLDLSSNGF-SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN 307
              I       +  L +LDLS N F    +   F NL +L +L L    F         +
Sbjct: 113 Q-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 308 LTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           L     L    +  I    +   ++ N T ++L F   S          +  L  L LSN
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV-NMSVNALGHLQLSN 227

Query: 368 ISLSVSTKLTANSSF------PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGR 421
           I L+        +        P L  + L     + +  +++         +    I   
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT-WKCSVKLFQFFWPRPVEYLNI--- 283

Query: 422 IPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSI 481
                +++ +   I+ +      T++  L  ++++         + +L  +   M    +
Sbjct: 284 -----YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336

Query: 482 SNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ-CLGNSTLETLDLRMNNFQGSIPQT 540
           S +           + SS  +L+ + N  +  + Q C     L+TL L+ N  + +  + 
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395

Query: 541 NAKGCKLTYLRLSGNHL----EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQV 596
                 ++ L      L          +      +  L++ +N L+G +  CL    ++V
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKV 454

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           LD+  N    S+P+       L  LN+  N+LK            L+ + + +N  D
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (261), Expect = 2e-23
 Identities = 83/438 (18%), Positives = 154/438 (35%), Gaps = 55/438 (12%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           LD+S + L  NI        +  LR L+L+FNDF+   +   F      LT L L +  F
Sbjct: 105 LDVSHNRLQ-NISCCP----MASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKF 158

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL-HQLRHLDLQSNNFVGKIPASLGN 209
                  + +       LDL      G    S       + HL    N+          N
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 210 NITQLAYLDLSSNSFSGHIPSSFSN----LQQLCYLDLDDNHFVGEIPASLGNNI--TQL 263
            +  L   ++  N  +     +F +       L  + L       +    L        +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 264 AYLDLSSNGFSGHIP-----SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
            YL++ +   +  I       S + L+ L+  +++   F+     +++   +++   L+ 
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 319 NELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN---ISLSVST 374
           ++    I         + T +  + + F+        + LK L+ L L      +     
Sbjct: 339 SDT-PFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTL 434
            +T N S      + L++ N   +         + +L+LS N +       ++      +
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPKV 452

Query: 435 IELDLSRNFLTSI----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEI 490
             LDL  N + SI     HL    L+ L++ SN L+ S+PD                   
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQ--ALQELNVASNQLK-SVPD------------------- 490

Query: 491 PSSFCNLSSIQYLDLSNN 508
              F  L+S+QY+ L +N
Sbjct: 491 -GVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (258), Expect = 5e-23
 Identities = 87/591 (14%), Positives = 162/591 (27%), Gaps = 161/591 (27%)

Query: 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
            L LS N  S       S L +L  L L +N        +F     L +L +++N L  +
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QN 114

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN-----ISLSVSTKLTAN 379
           I      + +L  + LSF++F       +F  L  L  L LS      + L     L  +
Sbjct: 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
               +L +  +             T   L     S                         
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL-----------------------F 209

Query: 440 SRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSS 499
           S     S++ L    L  + L+  + Q  +  L       ++ N +L             
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL------------- 256

Query: 500 IQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG 559
            Q+++ +      ++ Q      +E L++        I +      +             
Sbjct: 257 -QHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL---------- 304

Query: 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLV 619
                                            +L +  ++   F  S    ++    + 
Sbjct: 305 --------------------------------KSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGP 679
              L+ +           +      L+   N   D+       L                
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL---------------- 376

Query: 680 IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYY 739
                      +L+ +    N L                                 +   
Sbjct: 377 ----------KRLQTLILQRNGLK---------------------------NFFKVA--- 396

Query: 740 ESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEV-VGKLNSLKSLNISHNNLTGCI 798
             +   M  ++             D+S N       +       S+  LN+S N LTG +
Sbjct: 397 -LMTKNMSSLETL-----------DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 799 PSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849
              L    +++ LDL +N++   IP  +  L  L  LN+++NQL+  +P G
Sbjct: 445 FRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 69/425 (16%), Positives = 126/425 (29%), Gaps = 52/425 (12%)

Query: 457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP- 515
            +   + +L     DLPP   + S+S NS++         LS ++ L LS+N +   +  
Sbjct: 35  MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDF 93

Query: 516 ---QCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG-PLPPSLTNCVKL 571
                  +  LE LD+  N  Q +I         L +L LS N  +  P+     N  KL
Sbjct: 94  HVFLFNQD--LEYLDVSHNRLQ-NISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
            FL +            + +  L  +                       L+L    +KG 
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCI----------------------LLDLVSYHIKGG 186

Query: 632 LPPSL--VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPF 689
              SL   N   L ++   N+         ++ L  LQ+  ++ N        T      
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 690 PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGI 749
               +++ +   +        ++ F+         + +  + +    +  E  +      
Sbjct: 247 RGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 750 DLQMERI---------------LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794
            L +E +                       LS +             +S   LN + N  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNT 854
           T  +      L  L++L L  N L             +S L   +  L            
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 855 FGNDS 859
              +S
Sbjct: 425 AWAES 429

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 8e-14
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 11/190 (5%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
              +    L+ +D     I         S T L+     FT        + + +L  L L
Sbjct: 328 FAEMNIKMLSISDTP--FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLIL 384

Query: 171 SINSF--IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI 228
             N       +     N+  L  LD+  N+               +  L+LSSN  +G +
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 229 PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQL 287
                   ++  LDL +N     IP  +  ++  L  L+++SN     +P   F  L  L
Sbjct: 445 FRCLP--PKVKVLDLHNNRI-MSIPKDV-THLQALQELNVASNQLK-SVPDGVFDRLTSL 499

Query: 288 LWLNLEYNNF 297
            ++ L  N +
Sbjct: 500 QYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 105 NSSLFFLPR-LRKLNLAFNDFNGSKISSGFTDQFP-SLTLLDLCSCNFTGSIPPSLGNNI 162
                     +  LNL+ N      ++       P  + +LDL +     SIP  +  ++
Sbjct: 420 YDRTCAWAESILVLNLSSN-----MLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV-THL 472

Query: 163 TQLAYLDLSINSFIGHIP-SSFSNLHQLRHLDLQSNNF 199
             L  L+++ N  +  +P   F  L  L+++ L  N +
Sbjct: 473 QALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  128 bits (324), Expect = 1e-31
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 11/234 (4%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQ 195
             +   L+L   N    I      ++  L  L L  NS I  I   +F+ L  L  L+L 
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELF 131

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPA 254
            N  +  IP+     +++L  L L +N     IPS +F+ +  L  LDL +   +  I  
Sbjct: 132 DNW-LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                +  L YL+L        +P+  + L  L  L +  N+F    P  F  L+ L  L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 315 GLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
            +  ++ +  I  + F+ L +L E+ L+  N   S+    F  L+ L  L L +
Sbjct: 248 WVMNSQ-VSLIERNAFDGLASLVELNLA-HNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  125 bits (316), Expect = 1e-30
 Identities = 69/292 (23%), Positives = 109/292 (37%), Gaps = 40/292 (13%)

Query: 180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC 239
           PS  S  +Q   +         ++P  + +N     YL+L  N+       +F +L  L 
Sbjct: 47  PSVCSCSNQFSKVVCTRRGLS-EVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLE 102

Query: 240 YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299
            L L  N             I Q+                +F+ L  L  L L  N    
Sbjct: 103 VLQLGRNS------------IRQIE-------------VGAFNGLASLNTLELFDNWLTV 137

Query: 300 KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLK 358
                F  L++L  L L  N  I SIPS  F  + +L  + L        +    F  L 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQ 417
           NLK L+L   ++     +   +    L  L++S  +  E           L+ L +  +Q
Sbjct: 197 NLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 418 IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSNSLQ 466
           +   I    +D G+ +L+EL+L+ N L+S+ H    P + L  LHL  N   
Sbjct: 254 V-SLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  116 bits (292), Expect = 1e-27
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 97  WLHGN----IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG 152
            L  N    I +++    L  L  L L  N  +  +I  G  +   SL  L+L     T 
Sbjct: 81  NLMENNIQMIQADT-FRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 153 SIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNI 211
            IP      +++L  L L  N  I  IPS +F+ +  L  LDL     +  I       +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
             L YL+L   +    +P + + L  L  L++  NHF  EI     + ++ L  L + ++
Sbjct: 196 FNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
             S    ++F  L  L+ LNL +NN      D+FT L  L  L L +N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 7e-22
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 8/189 (4%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  L  L L  N    + I SG  +    L  L L +     SIP    N +  L  LDL
Sbjct: 122 LASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 171 SINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP 229
                + +I   +F  L  L++L+L   N    +P      +  L  L++S N F    P
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRP 235

Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
            SF  L  L  L + ++  V  I  +  + +  L  L+L+ N  S      F+ L+ L+ 
Sbjct: 236 GSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

Query: 290 LNLEYNNFV 298
           L+L +N + 
Sbjct: 295 LHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 53/229 (23%), Positives = 82/229 (35%), Gaps = 13/229 (5%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
               +      L   +P  +P +    ++  N++      +F +L  ++ L L  NS+  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 513 QIPQCLGN-STLETLDLRMNNFQGSIPQTNAKG-CKLTYLRLSGNHLEGPLPPSLTNCVK 570
                    ++L TL+L  N     IP    +   KL  L L  N +E     +      
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 571 LQFLDVGNNNLSGQIPE----CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626
           L  LD+G       I E     L N  L+ L++ M N    +P        L  L ++GN
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFN--LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 627 RLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
                 P S      L+ L V N+Q+        D L  L  L L  N 
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 5e-17
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 39/280 (13%)

Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
           +   +      LS ++P+ +  S  + L++  NN       TF     L  L L  N ++
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP- 688
                +      L  L++ +N +        + L +L+ L LR+N            +P 
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI--------ESIPS 164

Query: 689 -----FPKLRIMDCSH-NQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                 P L  +D     +L  +       +F+ + +       + Y+ L       + +
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISE----GAFEGLFN-------LKYLNL--GMCNIKDM 211

Query: 743 FLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL 802
                         L     +++S N F    P     L+SLK L + ++ ++    ++ 
Sbjct: 212 ---------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 803 RNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
             L  L  L+L+ N L+         L YL  L+L +N  
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  126 bits (319), Expect = 4e-31
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 11/234 (4%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQ 195
             +  LL+L        I  +   ++  L  L LS N  I  I   +F+ L  L  L+L 
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPA 254
            N  +  IP      +++L  L L +N     IPS +F+ +  L  LDL +   +  I  
Sbjct: 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                ++ L YL+L+       IP+  + L +L  L+L  N+     P  F  L  L  L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 315 GLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
            +  ++ I  I  + F+ L +L EI L+ +N +  +    F  L +L+ + L +
Sbjct: 237 WMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (288), Expect = 4e-27
 Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 97  WLHGN----IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG 152
            LH N    I  NS    L  L  L L+ N  +   I  G  +   +L  L+L     T 
Sbjct: 70  NLHENQIQIIKVNS-FKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 153 SIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNI 211
           +IP      +++L  L L  N  I  IPS +F+ +  LR LDL     +  I       +
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
           + L YL+L+  +    IP + + L +L  LDL  NH    I       +  L  L +  +
Sbjct: 185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
                  ++F NLQ L+ +NL +NN      D+FT L  L  + L +N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (280), Expect = 4e-26
 Identities = 73/375 (19%), Positives = 121/375 (32%), Gaps = 112/375 (29%)

Query: 180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC 239
           PS  S  +Q   +     N   ++P  +  N      L+L  N       +SF +L+ L 
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGISTNTR---LLNLHENQIQIIKVNSFKHLRHLE 91

Query: 240 YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299
            L L  NH            I  +                +F+ L  L  L L  N    
Sbjct: 92  ILQLSRNH------------IRTIE-------------IGAFNGLANLNTLELFDNRLTT 126

Query: 300 KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLK 358
                F  L++L  L L  N  I SIPS  F  + +L  + L        +    F  L 
Sbjct: 127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
           NL+ L+L+         L    +   L                     +L+ LDLS N +
Sbjct: 186 NLRYLNLAM------CNLREIPNLTPLI--------------------KLDELDLSGNHL 219

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478
              I    +  G+  L +L + ++ +  I+                              
Sbjct: 220 S-AIRPGSFQ-GLMHLQKLWMIQSQIQVIE------------------------------ 247

Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGS 536
                        ++F NL S+  ++L++N+L+  +P  L      LE + L  N +  +
Sbjct: 248 ------------RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN 294

Query: 537 IPQTNAKGCKLTYLR 551
                   C + +L 
Sbjct: 295 --------CDILWLS 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (255), Expect = 5e-23
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 382 FPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
             N   L+L    I     N  +    LE+L LS N I   I    ++ G+  L  L+L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFN-GLANLNTLELF 120

Query: 441 RNFLTSID-----HLPWKNLEYLHLDSNSLQ----GSLPDLPPHMVSFSIS-NNSLTGEI 490
            N LT+I      +L    L+ L L +N ++     +   +P  +    +     L+   
Sbjct: 121 DNRLTTIPNGAFVYLS--KLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYIS 177

Query: 491 PSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTY 549
             +F  LS+++YL+L+  +L  +IP       L+ LDL  N+   +I   + +G   L  
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQK 235

Query: 550 LRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNF 604
           L +  + ++     +  N   L  +++ +NNL+  +P  L      L+ + +  N +
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 74/278 (26%), Positives = 104/278 (37%), Gaps = 39/278 (14%)

Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
               S +     N+ E PD + T     LL+L ENQI   I    +   +  L  L LSR
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTN--TRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSR 97

Query: 442 NFLTSID-----HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
           N + +I+      L   NL  L L  N L  ++P                      +F  
Sbjct: 98  NHIRTIEIGAFNGLA--NLNTLELFDNRLT-TIP--------------------NGAFVY 134

Query: 497 LSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLS 553
           LS ++ L L NN +   IP        +L  LDL        I +   +G   L YL L+
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTF 612
             +L     P+LT  +KL  LD+  N+LS   P        LQ L M  +         F
Sbjct: 194 MCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650
                LV +NL  N L            +LE + + +N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
               +     +L+  +P  +  +    ++  N +     +SF +L  ++ L LS N +  
Sbjct: 44  QFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 513 QIPQCLGN-STLETLDLRMNNFQGSIPQTNAKG-CKLTYLRLSGNHLEGPLPPSLTNCVK 570
                    + L TL+L  N    +IP        KL  L L  N +E     +      
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 571 LQFLDVGNNNLSGQIPE----CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626
           L+ LD+G       I E     L N  L+ L++ M N    +P        L  L+L+GN
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSN--LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 627 RLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
            L    P S     +L+ L +  +QI        D L  L  + L  N 
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 43/274 (15%)

Query: 578 NNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLV 637
             NL  ++P+ + ++  ++L++  N        +F     L  L L+ N ++     +  
Sbjct: 52  RKNLR-EVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 638 NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP------FPK 691
               L  L++ +N++          L +L+ L LR+N            +P       P 
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI--------ESIPSYAFNRIPS 161

Query: 692 LRIMDCSH-NQLTGVLP--LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKG 748
           LR +D     +L+ +       L + + +     N  E+  +                  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT----------------- 204

Query: 749 IDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTEL 808
                   L     +DLS N      P     L  L+ L +  + +     ++  NL  L
Sbjct: 205 -------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 809 ESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
             ++L+ N L          L++L  ++L +N  
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  LR LNLA  +    +I +  T     L  LDL   + + +I P     +  L  L +
Sbjct: 184 LSNLRYLNLAMCNL--REIPN-LTP-LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWM 238

Query: 171 SINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSF 224
             +  I  I   +F NL  L  ++L  NN    +P  L   +  L  + L  N +
Sbjct: 239 IQSQ-IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 73/227 (32%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
              LNL+ N+++     S  + ++LE+L +  N I                  +    F 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----------------IEIGAFN 109

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
           G             L  ++   N+LT +       +F                       
Sbjct: 110 G----------LANLNTLELFDNRLTTIPN----GAFVY--------------------- 134

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
                              L+    + L +N  +        ++ SL+ L++        
Sbjct: 135 -------------------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 798 IPS-SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           I   +   L+ L  L+L+   L   IP  L  L  L  L+LS N L 
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L+L+      N+    +L  L +L +L+L+ N    S I  G       L  L +     
Sbjct: 190 LNLA----MCNLREIPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFV 200
              I  +  +N+  L  ++L+ N+        F+ LH L  + L  N + 
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            +       +  +P+ +    + + LN+  N +     +S ++L  LE L LS N +   
Sbjct: 47  KVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-T 102

Query: 822 IPTQ-LASLNYLSVLNLSNNQL 842
           I       L  L+ L L +N+L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRL 124

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  127 bits (320), Expect = 1e-30
 Identities = 58/324 (17%), Positives = 107/324 (33%), Gaps = 40/324 (12%)

Query: 388 LDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS 446
            +     IS    +      + E   L          S + +  ++   EL L+R  L+S
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLSS 73

Query: 447 IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
           +       +  L +  N+L  SLP+LP  +      +N L+  +P    +L   ++LD+ 
Sbjct: 74  LPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPELPASL---KHLDVD 128

Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT 566
           NN L+  +P+      LE ++   N     +P        L  L +  N L   LP    
Sbjct: 129 NNQLT-MLPELPAL--LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQLTF-LPELPE 180

Query: 567 NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626
           +   L+ LDV  N L   +P     +                 +T       +      N
Sbjct: 181 S---LEALDVSTNLLE-SLPAVPVRNH-------------HSEET------EIFFRCREN 217

Query: 627 RLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTR 686
           R+   +P ++++      + + +N +       L               F    G   T 
Sbjct: 218 RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 687 VPFPKLRIMD-CSHNQLTGVLPLW 709
                  +      N+ + V  +W
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  124 bits (312), Expect = 1e-29
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 23/275 (8%)

Query: 334 NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC 393
           N +    SF N         F+     +  +L   + + +  L         S L L+  
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 394 NISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453
           N+S  PDNL  Q  + +L++++N +   +P         +L  LD   N L+++  LP  
Sbjct: 70  NLSSLPDNLPPQ--ITVLEITQNALI-SLPELP-----ASLEYLDACDNRLSTLPELP-A 120

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           +L++L +D+N L   LP+LP  +   +  NN LT  +P    +L   + L + NN L+  
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-F 174

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLT----YLRLSGNHLEGPLPPSLTNCV 569
           +P+   +  LE LD+   N   S+P    +         + R   N +   +P ++ +  
Sbjct: 175 LPELPES--LEALDVS-TNLLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLD 230

Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
               + + +N LS +I E L   T Q        +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (285), Expect = 2e-26
 Identities = 56/282 (19%), Positives = 102/282 (36%), Gaps = 39/282 (13%)

Query: 266 LDLSSNGFSGHIP-------SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
             LS N F   I        S++   ++        N  V  + +    + Q S L L  
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNR 68

Query: 319 NELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA 378
             L  S+P ++     +T + ++ +      EL       +L+ L   +  L   + L  
Sbjct: 69  LNL-SSLPDNLPP--QITVLEITQNALISLPEL-----PASLEYLDACDNRL---STLPE 117

Query: 379 NSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELD 438
                +L  LD+    ++  P+       LE ++   NQ+   +P         +L  L 
Sbjct: 118 --LPASLKHLDVDNNQLTMLPELPA---LLEYINADNNQLT-MLPELP-----TSLEVLS 166

Query: 439 LSRNFLTSIDHLPWKNLEYLHLDSNSLQ------GSLPDLPPHMVSFSISNNSLTGEIPS 492
           +  N LT +  LP ++LE L + +N L+                + F    N +T  IP 
Sbjct: 167 VRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPE 224

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQ 534
           +  +L     + L +N LS +I + L   T +        + 
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (266), Expect = 5e-24
 Identities = 72/457 (15%), Positives = 137/457 (29%), Gaps = 69/457 (15%)

Query: 145 LCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIP 204
           +   N   S+  +   N         +I+       S++    +        N  V  + 
Sbjct: 4   MLPINNNFSLSQNSFYN---------TISGTYADYFSAWDKWEKQALPGENRNEAVSLLK 54

Query: 205 ASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA 264
             L   I Q + L L+  + S  +P +     Q+  L++  N  +  +P    +    L 
Sbjct: 55  ECL---INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS----LE 103

Query: 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
           YLD   N  S  +P   ++L+ L   +++ N     +P++   L  ++      N+L   
Sbjct: 104 YLDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPELPALLEYIN---ADNNQL-TM 154

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPN 384
           +P                                +L+VLS+ N  L+            +
Sbjct: 155 LPELP----------------------------TSLEVLSVRNNQLT-----FLPELPES 181

Query: 385 LSALDLSACNISEFPDNLRTQHQLE----LLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
           L ALD+S   +   P      H  E         EN+I   IP  +  +       + L 
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL--DPTCTIILE 238

Query: 441 RNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSI 500
            N L+S                                     +++T   P +  +  S 
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP 560
            +    +   +      L   +        + F+  +     K      LR     +   
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 561 LPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVL 597
              S  + V L + ++    L  Q  E L ++    L
Sbjct: 359 ATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 3e-23
 Identities = 55/333 (16%), Positives = 109/333 (32%), Gaps = 39/333 (11%)

Query: 91  LDLSCSWLHGNIPS--NSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC 148
             LS +  +  I            +  K  L   + N   +S          + L L + 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQL-NR 68

Query: 149 NFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG 208
               S+P +L   IT    L+++ N+ +  +P   ++   L +LD   +N +  +P    
Sbjct: 69  LNLSSLPDNLPPQIT---VLEITQNA-LISLPELPAS---LEYLDA-CDNRLSTLPELPA 120

Query: 209 NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
           +    L +LD+ +N  +  +P   + L+   Y++ D+N     +P    +    L  L +
Sbjct: 121 S----LKHLDVDNNQLT-MLPELPALLE---YINADNNQLT-MLPELPTS----LEVLSV 167

Query: 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS----FLGLAYNELIGS 324
            +N  +  +P    +L+    L++   N +  +P +            F     N  I  
Sbjct: 168 RNNQLT-FLPELPESLE---ALDV-STNLLESLPAVPVRNHHSEETEIFFRCRENR-ITH 221

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPN 384
           IP +I  L     I L  +  S S      ++           I     +      +  +
Sbjct: 222 IPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYF---SMSDGQQNTLH 277

Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQ 417
               D       E   +  +Q            
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN 310

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 2e-21
 Identities = 67/349 (19%), Positives = 116/349 (33%), Gaps = 81/349 (23%)

Query: 519 GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNC--VKLQFLDV 576
            N+   + +   N   G+     +   K     L G +        L  C   +   L +
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNE-AVSLLKECLINQFSELQL 66

Query: 577 GNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL 636
              NLS  +P+ L    + VL++  N    SLP+  A    L  L+   NRL   LP   
Sbjct: 67  NRLNLS-SLPDNLPPQ-ITVLEITQNALI-SLPELPAS---LEYLDACDNRLST-LPELP 119

Query: 637 VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP--FPKLRI 694
            + ++L   DV NNQ+    P   ++   L+ +   +N+         T +P     L +
Sbjct: 120 ASLKHL---DVDNNQLT-MLP---ELPALLEYINADNNQL--------TMLPELPTSLEV 164

Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
           +   +NQLT  LP                        LP S               L+  
Sbjct: 165 LSVRNNQLT-FLP-----------------------ELPES---------------LE-- 183

Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKS----LNISHNNLTGCIPSSLRNLTELES 810
                   +D+S+N  +  +P V  + +  +          N +T  IP ++ +L    +
Sbjct: 184 -------ALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDS 859
           + L  N L+ RI   L+        +                +    D+
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 1e-20
 Identities = 72/410 (17%), Positives = 119/410 (29%), Gaps = 115/410 (28%)

Query: 424 SWMWDIGVHTLIELDLSRNFLTSID---HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS 480
           S M  I  +  +  +   N ++         W   E   L   +                
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGEN---------------- 45

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQT 540
              N     +    C ++    L L+  +LS  +P  L    +  L++  N    S+P+ 
Sbjct: 46  --RNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLPPQ-ITVLEITQNALI-SLPEL 98

Query: 541 NAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMR 600
                 L YL    N L   LP    +   L+ LDV NN L+  +PE      L+ ++  
Sbjct: 99  P---ASLEYLDACDNRLST-LPELPAS---LKHLDVDNNQLT-MLPELPAL--LEYINAD 148

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
            N  +  LP+       L  L++  N+L   LP    +   LE LDV  N ++ + P   
Sbjct: 149 NNQLT-MLPELPTS---LEVLSVRNNQLTF-LPELPES---LEALDVSTNLLE-SLPAVP 199

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG 720
                 +                             C  N++T                 
Sbjct: 200 VRNHHSEET----------------------EIFFRCRENRIT----------------- 220

Query: 721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
                      +P      E+I              L    TI L  N    +I E + +
Sbjct: 221 ----------HIP------ENILS------------LDPTCTIILEDNPLSSRIRESLSQ 252

Query: 781 LNSLKSL---NISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA 827
             +        I  +   G   +  R L +  +     NK +       A
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 50/289 (17%), Positives = 88/289 (30%), Gaps = 88/289 (30%)

Query: 568 CVKLQFLDVGNNNLSGQIPECLGN--------STLQVLDMRMNNFSGSLPQTFAKSCVLV 619
                   +  N+    I     +            +     N     L +         
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FS 62

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGP 679
            L LN   L   LP +L     + VL++  N +  + P   ++   L+ L    NR    
Sbjct: 63  ELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL--- 112

Query: 680 IGDTKTRVP--FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
                + +P     L+ +D  +NQLT +LP                        LP    
Sbjct: 113 -----STLPELPASLKHLDVDNNQLT-MLP-----------------------ELPAL-- 141

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
                        L+          I+  +N+    +PE      SL+ L++ +N LT  
Sbjct: 142 -------------LE---------YINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-F 174

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS----VLNLSNNQL 842
           +P    +L     LD+S+N L   +P      ++            N++
Sbjct: 175 LPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  120 bits (302), Expect = 4e-30
 Identities = 62/228 (27%), Positives = 90/228 (39%), Gaps = 15/228 (6%)

Query: 146 CSCNFTG--SIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGK 202
            SC   G  ++P  +         + L  N  I H+P+ SF     L  L L SN    +
Sbjct: 16  TSCPQQGLQAVPVGIPAASQ---RIFLHGNR-ISHVPAASFRACRNLTILWLHSNVL-AR 70

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
           I A+    +  L  LDLS N+    +  + F  L +L  L LD      E+   L   + 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 262 QLAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
            L YL L  N     +P  +F +L  L  L L  N         F  L  L  L L  N 
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 321 LIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
            +  +    F  L  L  +YL  +N S ++     A L+ L+ L L++
Sbjct: 189 -VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  116 bits (292), Expect = 9e-29
 Identities = 52/220 (23%), Positives = 84/220 (38%), Gaps = 12/220 (5%)

Query: 102 IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNN 161
           +P           +++ L  N    S + +       +LT+L L S      I  +    
Sbjct: 26  VPVG----IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTG 78

Query: 162 ITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
           +  L  LDLS N+ +  +  + F  L +L  L L       ++   L   +  L YL L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 221 SNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
            N+    +P  +F +L  L +L L  N     +P      +  L  L L  N  +   P 
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 280 SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
           +F +L +L+ L L  NN      +    L  L +L L  N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  115 bits (291), Expect = 1e-28
 Identities = 58/241 (24%), Positives = 88/241 (36%), Gaps = 17/241 (7%)

Query: 178 HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQ 237
            +P         + + L  N     +PA+       L  L L SN  +    ++F+ L  
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 238 LCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNN 296
           L  LDL DN  +  +  +  + + +L  L L   G    +    F  L  L +L L+ N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 297 FVGKIPD-MFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDF 354
               +PD  F +L  L+ L L  N  I S+P   F  L +L  + L   N    V  + F
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAF 197

Query: 355 AKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSA------CNISEFPDNLRTQHQL 408
             L  L  L L   +LS +    A +    L  L L+       C        L+     
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS 256

Query: 409 E 409
            
Sbjct: 257 S 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 3e-25
 Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 16/223 (7%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
            +P  +         + L  N  S    +SF   + L  L L  N         FT L  
Sbjct: 25  AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
           L  L L+ N  + S+  + F  L  L  ++L        +    F  L  L+ L L + +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 370 LSVSTKLTAN--SSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWM 426
           L     L  +      NL+ L L    IS  P+   R  H L+ L L +N++   +    
Sbjct: 141 L---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 427 WDIGVHTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSNSLQ 466
           +   +  L+ L L  N L+++      P + L+YL L+ N   
Sbjct: 197 FR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 11/221 (4%)

Query: 461 DSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL- 518
               LQ ++P  +P       +  N ++    +SF    ++  L L +N L+ +I     
Sbjct: 19  PQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAF 76

Query: 519 -GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPP-SLTNCVKLQFLD 575
            G + LE LDL  N    S+      G  +L  L L    L+  L P        LQ+L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLY 135

Query: 576 VGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633
           + +N L   +P+        L  L +  N  S    + F     L  L L+ NR+    P
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
            +  +   L  L +  N +       L  L  LQ L L  N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 44/220 (20%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLS 553
           C              L   +P  +  +  + + L  N     +P  + + C  LT L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQ- 610
            N L      + T    L+ LD+ +N     +      G   L  L +        L   
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 611 TFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
            F     L  L L  N L+  LP  +  +   L  L +  N+I          L  L  L
Sbjct: 124 LFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 670 ILRSNRFWGPIGDTKTRVP------FPKLRIMDCSHNQLT 703
           +L  NR           V         +L  +    N L+
Sbjct: 183 LLHQNRV--------AHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 53/272 (19%), Positives = 79/272 (29%), Gaps = 61/272 (22%)

Query: 578 NNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLV 637
              L   +P  +  +  Q + +  N  S     +F     L  L L+ N L      +  
Sbjct: 20  QQGLQ-AVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 638 NCQYLEVLDVGNN-QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP------FP 690
               LE LD+ +N Q+    P     L  L  L L               +         
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--------QELGPGLFRGLA 129

Query: 691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGID 750
            L+ +    N L                             LP      +  F       
Sbjct: 130 ALQYLYLQDNALQ---------------------------ALP------DDTF------- 149

Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
               R L     + L  NR           L+SL  L +  N +    P + R+L  L +
Sbjct: 150 ----RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
           L L +N L+      LA L  L  L L++N  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 41/226 (18%), Positives = 64/226 (28%), Gaps = 45/226 (19%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
              + L+GNR+      S   C+ L +L + +N +          L  L+ L L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
             +    T     +L  +      L                             L     
Sbjct: 94  RSVDPA-TFHGLGRLHTLHLDRCGLQ---------------------------ELG---- 121

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
               +F             L     + L  N  Q    +    L +L  L +  N ++  
Sbjct: 122 --PGLFRG-----------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
              + R L  L+ L L  N++A   P     L  L  L L  N L 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 97  WLHGN----IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG 152
           +L  N    +P ++    L  L  L L  N    S +         SL  L L       
Sbjct: 135 YLQDNALQALPDDT-FRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVA- 190

Query: 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFV 200
            + P    ++ +L  L L  N+ +  +P+   + L  L++L L  N +V
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
           T        Q  +P   G   + + + +  N ++    +S R    L  L L SN LA  
Sbjct: 15  TTSCPQQGLQA-VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 822 IPTQLASLNYLSVLNLSNNQLEGPIPGG 849
                  L  L  L+LS+N     +   
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPA 99

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  123 bits (311), Expect = 5e-30
 Identities = 83/431 (19%), Positives = 138/431 (32%), Gaps = 65/431 (15%)

Query: 165 LAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSF 224
            A    +          S   L  L  LD  +++            +T L  L  +SN+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTSNNI 76

Query: 225 SGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNL 284
           +  +    S    L YL  D N     +  +    +T+L YL+  +N  +       S  
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 285 QQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN 344
             L +LN   N    +I    ++ TQL+ L    N+ I  +   +     LT +  SF+ 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 345 FSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRT 404
            +      D ++ K L  L+    ++   TKL   +    L+ LD S+  ++E    +  
Sbjct: 182 ITE----LDVSQNKLLNRLNCDTNNI---TKLDL-NQNIQLTFLDCSSNKLTEID--VTP 231

Query: 405 QHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNS 464
             QL   D S N +   +        +  L  L   +  L  ID      L Y   +   
Sbjct: 232 LTQLTYFDCSVNPL-TELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 465 LQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTL 523
               L       +         +T E+         + YL L+N  L+            
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT------------ 331

Query: 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
             LD+  N              KL  L     H++     S+     L            
Sbjct: 332 -ELDVSHNT-------------KLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 584 QIPECLGNSTL 594
              E L N++L
Sbjct: 376 MPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (295), Expect = 6e-28
 Identities = 83/439 (18%), Positives = 147/439 (33%), Gaps = 48/439 (10%)

Query: 100 GNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLG 159
           G   S +  F          A  +   +   S   +Q  +LT LD  + + T  +     
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSIT-DMTGI-- 60

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
             +T L  L  + N+ I  +    S    L +L   SN     +  +    +T+L YL+ 
Sbjct: 61  EKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNC 113

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
            +N  +       S    L YL+   N    EI  S   + TQL  LD   N        
Sbjct: 114 DTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKIT--KL 164

Query: 280 SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIY 339
             +   QL  L+  +N    ++    +    L+ L    N +   +   + + + LT + 
Sbjct: 165 DVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 340 LSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFP 399
            S +  +      D   L  L     S   L   T+L   S+   L+ L     ++ E  
Sbjct: 219 CSSNKLTE----IDVTPLTQLTYFDCSVNPL---TELD-VSTLSKLTTLHCIQTDLLEID 270

Query: 400 DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT-LIELDLSRNFLTSIDHLPWKNLEYL 458
             L    QL        +    +     D+  +T L  LD     +T +D      L YL
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKEL-----DVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323

Query: 459 HLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC 517
           +L++  L   L       + S S  N  +  +   S   + ++     +       +P+ 
Sbjct: 324 YLNNTELT-ELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKE 379

Query: 518 LGNSTLETLDLRMNNFQGS 536
              +   T+ +  +     
Sbjct: 380 TLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (263), Expect = 7e-24
 Identities = 78/488 (15%), Positives = 149/488 (30%), Gaps = 89/488 (18%)

Query: 358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQ 417
            N      +   +  +  ++       L++LD    +I++    +     L  L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISE-EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN 75

Query: 418 IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMV 477
           I     S         L  L    N LT++D  P   L YL+ D+N L        P + 
Sbjct: 76  ITTLDLS-----QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

Query: 478 SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSI 537
             + + N+LT EI  S  + + +  LD   N            + L TLD   N     +
Sbjct: 131 YLNCARNTLT-EIDVS--HNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT-EL 185

Query: 538 PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVL 597
             +  K   L  L    N++       L   ++L FLD  +N L+ +I      + L   
Sbjct: 186 DVSQNK--LLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDVT-PLTQLTYF 238

Query: 598 DMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
           D  +N  +  L  +      L +L+     L   +  +  +   L        +      
Sbjct: 239 DCSVNPLT-ELDVSTLSK--LTTLHCIQTDLLE-IDLT--HNTQLIYFQAEGCRKIKELD 292

Query: 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPF---PKLRIMDCSHNQLTGVLPLWYLESF 714
             +    +L +L  ++           T +     PKL  +  ++ +LT  L +      
Sbjct: 293 --VTHNTQLYLLDCQAAGI--------TELDLSQNPKLVYLYLNNTELT-ELDV------ 335

Query: 715 KAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKI 774
                 +N  ++                                   ++   +   Q   
Sbjct: 336 -----SHNTKLK-----------------------------------SLSCVNAHIQ-DF 354

Query: 775 PEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 834
              VGK+ +L +   +          +L N +   ++        G             V
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG--GV 411

Query: 835 LNLSNNQL 842
            + + N +
Sbjct: 412 YDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (254), Expect = 1e-22
 Identities = 76/410 (18%), Positives = 139/410 (33%), Gaps = 49/410 (11%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
              L  L    N     K+++        LT L+  +   T  +  S       L YL+ 
Sbjct: 84  NTNLTYLACDSN-----KLTNLDVTPLTKLTYLNCDTNKLT-KLDVS---QNPLLTYLNC 134

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
           + N+ +  I    S+  QL  LD   N  + K+  +     TQL  LD S N  +     
Sbjct: 135 ARNT-LTEID--VSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---L 185

Query: 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWL 290
             S  + L  L+ D N+   ++  +      QL +LD SSN  +  I    + L QL + 
Sbjct: 186 DVSQNKLLNRLNCDTNNIT-KLDLN---QNIQLTFLDCSSNKLT-EID--VTPLTQLTYF 238

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
           +   N    ++    + L++L+ L     +L+  I  +      L             + 
Sbjct: 239 DCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKEL- 291

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410
             D      L +L      +   T+L   S  P L  L L+   ++E    +    +L+ 
Sbjct: 292 --DVTHNTQLYLLDCQAAGI---TELDL-SQNPKLVYLYLNNTELTELD--VSHNTKLKS 343

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK-NLEYLHLDSNSLQGS- 468
           L      I     S      +  L     +     ++       N   + +  + L    
Sbjct: 344 LSCVNAHIQD-FSSVG---KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 469 --LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
             +   P     +  + N++T E  S+     +  +    N ++ G +  
Sbjct: 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTF-TSENGAIVGTVTT 448

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 28/240 (11%)

Query: 97  WLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP 156
               N  +   +     L +LN   N      I+    +Q   LT LD  S   T  I  
Sbjct: 176 DCSFNKITELDVSQNKLLNRLNCDTN-----NITKLDLNQNIQLTFLDCSSNKLT-EIDV 229

Query: 157 SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216
           +    +TQL Y D S+N  +  +    S L +L  L     + + +I  +   + TQL Y
Sbjct: 230 T---PLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLL-EIDLT---HNTQLIY 279

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
                      +    ++  QL  LD        E+  S      +L YL L++   +  
Sbjct: 280 FQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELT-E 332

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
           +    S+  +L  L+    +   +       +  L+    A  + I ++P       +LT
Sbjct: 333 LD--VSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLT 387

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  119 bits (299), Expect = 3e-29
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 25/283 (8%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQ 195
             ++  LDL +   T  I  S       L  L L+ N  I  I   SFS+L  L HLDL 
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLS 108

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPA 254
            N  +  + +S    ++ L +L+L  N +     +S FS+L +L  L + +     +I  
Sbjct: 109 YNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                +T L  L++ ++    + P S  ++Q +  L L     +  +       + +  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST 374
            L   +L     S +      +                   K    + + +++ SL    
Sbjct: 228 ELRDTDLDTFHFSELSTGETNS-----------------LIKKFTFRNVKITDESLFQVM 270

Query: 375 KLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSEN 416
           KL        L  L+ S   +   PD        L+ + L  N
Sbjct: 271 KLLNQ--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  118 bits (298), Expect = 4e-29
 Identities = 63/302 (20%), Positives = 113/302 (37%), Gaps = 31/302 (10%)

Query: 146 CSCNFTG--SIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGK 202
           C  +     SIP  L   +     LDLS N  I +I +S       L+ L L SN  +  
Sbjct: 36  CKGSSGSLNSIPSGLTEAVK---SLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INT 90

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           I     +++  L +LDLS N  S    S F  L  L +L+L  N +      SL +++T+
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 263 LAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
           L  L + +      I    F+ L  L  L ++ ++     P    ++  +S L L   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ- 209

Query: 322 IGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANS 380
              +     ++  ++  + L                L       LS    +   K     
Sbjct: 210 HILLLEIFVDVTSSVECLELRD------------TDLDTFHFSELSTGETNSLIKK---- 253

Query: 381 SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
                  + ++  ++ +    L     L  L+ S NQ+   +P  ++D  + +L ++ L 
Sbjct: 254 --FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFD-RLTSLQKIWLH 309

Query: 441 RN 442
            N
Sbjct: 310 TN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  118 bits (297), Expect = 6e-29
 Identities = 53/277 (19%), Positives = 102/277 (36%), Gaps = 21/277 (7%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           +IPS         ++ L+L+ N    + IS+    +  +L  L L S     +I     +
Sbjct: 45  SIPSG----LTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFS 97

Query: 161 NITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
           ++  L +LDLS N  + ++ SS F  L  L  L+L  N +      SL +++T+L  L +
Sbjct: 98  SLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 220 SSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIP 278
            +      I    F+ L  L  L++D +            +I  +++L L        + 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 279 SSFSNLQQLLWLNLEYNNFVGK--------IPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
                   +  L L   +              +          + +    L   +   + 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           ++  L E+  S +    SV    F +L +L+ + L  
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (255), Expect = 2e-23
 Identities = 61/340 (17%), Positives = 110/340 (32%), Gaps = 53/340 (15%)

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273
                + S S       +  +  +              IP+ L   +     LDLS+N  
Sbjct: 9   WVLGVIISLSKEESSNQASLSCDRNGICKGSSGSL-NSIPSGLTEAVK---SLDLSNNRI 64

Query: 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-L 332
           +    S       L  L L  N       D F++L  L  L L+YN L  ++ SS F+ L
Sbjct: 65  TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPL 123

Query: 333 LNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSA 392
            +LT + L  + +    E   F+ L  L++L + N             +F  +       
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-----------MDTFTKIQ------ 166

Query: 393 CNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI----- 447
                   +      LE L++  + +            +  +  L L       +     
Sbjct: 167 ------RKDFAGLTFLEELEIDASDLQ-SYEPKSLK-SIQNVSHLILHMKQHILLLEIFV 218

Query: 448 DHLPWKNLEYLHLDSNSLQG----SLPDLP-------PHMVSFSISNNSLTGEIPSSFCN 496
           D     ++E L L    L       L               +  I++ SL  ++      
Sbjct: 219 DVTS--SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 497 LSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQ 534
           +S +  L+ S N L   +P  +    ++L+ + L  N + 
Sbjct: 276 ISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 12/195 (6%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L  L  LNL  N +  +   +        L +L + + +    I       +T L  L++
Sbjct: 123 LSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN-------- 222
             +    + P S  ++  + HL L     +  +     +  + +  L+L           
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS 282
             S    +S         + + D     ++   L N I+ L  L+ S N         F 
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL-NQISGLLELEFSRNQLKSVPDGIFD 298

Query: 283 NLQQLLWLNLEYNNF 297
            L  L  + L  N +
Sbjct: 299 RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 60/363 (16%), Positives = 117/363 (32%), Gaps = 66/363 (18%)

Query: 472 LPPHM----VSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLD 527
           +P  +    V   I + S       +  +         S+ SL+  IP  L    +++LD
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLD 58

Query: 528 LRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
           L  N     I  ++ + C  L  L L+ N +      S ++   L+ LD+  N LS  + 
Sbjct: 59  LSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLS 116

Query: 587 ECL--GNSTLQVLDMRMNNFSGSLPQ--TFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQY 641
                  S+L  L++  N +  +L +   F+    L  L +        +         +
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 642 LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP------FPKLRIM 695
           LE L++  + +    P  L  +  +  LIL   +           +          +  +
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH--------ILLLEIFVDVTSSVECL 227

Query: 696 DCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMER 755
           +     L           F  +  G  NS+                              
Sbjct: 228 ELRDTDLDTF-------HFSELSTGETNSL-----------------------------I 251

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
              TF  + ++     + + +++ +++ L  L  S N L          LT L+ + L +
Sbjct: 252 KKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 816 NKL 818
           N  
Sbjct: 311 NPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 21/262 (8%)

Query: 459 HLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN---SLSGQI 514
              S SL  S+P  L   + S  +SNN +T    S      ++Q L L++N   ++    
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 515 PQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL-TNCVKLQF 573
              LG+  LE LDL  N               LT+L L GN  +     SL ++  KLQ 
Sbjct: 96  FSSLGS--LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 574 LDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
           L VGN +   +I      G + L+ L++  ++     P++      +  L L+  +    
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 632 LPPSLVNCQYLEVLDVGNNQIDDT--------FPYWLDVLLELQVLILRSNRFWGPIGDT 683
           L   +     +E L++ +  +D              L      + + +     +  +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 684 KTRVPFPKLRIMDCSHNQLTGV 705
                   L  ++ S NQL  V
Sbjct: 274 N---QISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 50/323 (15%), Positives = 104/323 (32%), Gaps = 50/323 (15%)

Query: 544 GCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
                   +     E     +  +C +       + +L+  IP  L    ++ LD+  N 
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLDLSNNR 63

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
            +        +   L +L L  N +      S  +   LE LD+  N + +    W   L
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123

Query: 664 LELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP---------LWYLESF 714
             L  L L  N  +  +G+T       KL+I+   +      +          L  LE  
Sbjct: 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE-- 180

Query: 715 KAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKI 774
              +  ++                       ++  + +  + +   + + L   +    +
Sbjct: 181 ---IDASD-----------------------LQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 775 PEVVGKLNSLKSLNISHNNLTGC--------IPSSLRNLTELESLDLSSNKLAGRIPTQL 826
              V   +S++ L +   +L             +SL       ++ ++   L  ++   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 827 ASLNYLSVLNLSNNQLEGPIPGG 849
             ++ L  L  S NQL+  +P G
Sbjct: 274 NQISGLLELEFSRNQLKS-VPDG 295

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  112 bits (282), Expect = 5e-27
 Identities = 66/290 (22%), Positives = 102/290 (35%), Gaps = 15/290 (5%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQ 195
             +   L          I     +    L  +++S N  +  I +  FSNL +L  + ++
Sbjct: 29  PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPA 254
             N +  I      N+  L YL +S+     H+P     +  Q   LD+ DN  +  I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 255 -SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP-DMFTNLTQLS 312
            S      +   L L+ NG    I +S  N  QL  LNL  NN + ++P D+F   +   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 313 FLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS-L 370
            L ++    I S+PS   E L  L     S  N     +L    KL  L   SL+  S  
Sbjct: 206 ILDISRTR-IHSLPSYGLENLKKLR--ARSTYNLK---KLPTLEKLVALMEASLTYPSHC 259

Query: 371 SVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
                     S  +            ++    R Q      D   +   G
Sbjct: 260 CAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRG 309

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.0 bits (226), Expect = 8e-20
 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 18/256 (7%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCS----WLHGN----IPSNSSLFFLPRLRKLNLAFNDFN 125
           CS     C  +    I  DL  +             I   +       L K+ ++ ND  
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVL 67

Query: 126 GSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFS 184
              I +      P L  + +   N    I P    N+  L YL +S    I H+P     
Sbjct: 68  -EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKI 125

Query: 185 NLHQLRHLDLQSNNFVGKIPA-SLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
           +  Q   LD+Q N  +  I   S      +   L L+ N       S+F+  Q       
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
           D+N+   E+P  + +  +    LD+S             NL++L   +      +     
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP---- 240

Query: 304 MFTNLTQLSFLGLAYN 319
               L  L    L Y 
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.0 bits (226), Expect = 9e-20
 Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 41/277 (14%)

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
               ++    EIP+ L  N  +L                +FS    L  + +  N+ +  
Sbjct: 14  FLCQESKVT-EIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 301 IP-DMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLK 358
           I  D+F+NL +L  + +     +  I    F+ L NL  + +S +     +         
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 359 NLKVLSLS-NISLSVSTKLTANSSFPNLSA----LDLSACNISEFPDN-LRTQHQLELLD 412
              +L +  NI++     +  NS F  LS     L L+   I E  ++        EL  
Sbjct: 129 QKVLLDIQDNINI---HTIERNS-FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 413 LSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL 472
              N +   +P+ ++  G    + LD+SR  + S+     +NL+ L   S     +L  L
Sbjct: 185 SDNNNLE-ELPNDVFH-GASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKL 239

Query: 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS 509
           P                       L ++    L+  S
Sbjct: 240 PT-------------------LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 33/254 (12%), Positives = 76/254 (29%), Gaps = 14/254 (5%)

Query: 454 NLEYLHLDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
           +        + +   +P DLP + +        L      +F     ++ +++S N +  
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 513 QIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPPSLTNCV 569
            I   +      L  + +   N    I     +    L YL +S   ++        + +
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 570 KLQFLDVGNNNLSGQIPECL---GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626
           +   LD+ +N     I        +    +L +  N         F  + +      + N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 627 RLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTR 686
            L+              +LD+   +I     Y L+ L +L+     + +    +      
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL------ 242

Query: 687 VPFPKLRIMDCSHN 700
                L     ++ 
Sbjct: 243 EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 55/331 (16%), Positives = 94/331 (28%), Gaps = 65/331 (19%)

Query: 382 FPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
             N   L      +             LE +++S+N +   I + ++   +  L E+ + 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIE 87

Query: 441 R-NFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF 494
           + N L  I      +LP  NL+YL + +  ++  LPD+                      
Sbjct: 88  KANNLLYINPEAFQNLP--NLQYLLISNTGIK-HLPDV--------------------HK 124

Query: 495 CNLSSIQYLDLSNNSLSGQIP----QCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYL 550
            +      LD+ +N     I       L       L L  N  Q  I  +   G +L  L
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE-SVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 551 RLSG-NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP 609
            LS  N+LE               LD+    +   +P                       
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP----------------------S 219

Query: 610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
                   L + +    +      P+L     L    +        F  W   + EL  +
Sbjct: 220 YGLENLKKLRARSTYNLKK----LPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

Query: 670 ILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN 700
             +S         T+ R     L   + S  
Sbjct: 276 CNKSILRQEVDYMTQARGQRSSLAEDNESSY 306

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 43/303 (14%), Positives = 85/303 (28%), Gaps = 62/303 (20%)

Query: 545 CKLTYLRLSGNHLE---GPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDM 599
           C         + +      LP +         L      L   I +    G   L+ +++
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAI------ELRFVLTKLR-VIQKGAFSGFGDLEKIEI 61

Query: 600 RMNNFSGSLP-QTFAKSCVLVSLNL-NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
             N+    +    F+    L  + +   N L    P +  N   L+ L + N  I     
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM 717
                 L+  +L ++ N     I          +  I+  + N +  +       +F   
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN----SAFN-- 175

Query: 718 MHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEV 777
                                             Q++ +          +N  +    +V
Sbjct: 176 --------------------------------GTQLDELN------LSDNNNLEELPNDV 197

Query: 778 VGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837
               +    L+IS   +       L NL +L +    + K   ++PT L  L  L   +L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASL 253

Query: 838 SNN 840
           +  
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP-YWLDVLLELQVL-ILRSNR 675
            + L     +L+     +      LE +++  N + +         L +L  + I ++N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 676 FWGPIGDTKTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAM---MHGNNNSVE 726
                      +        P L+ +  S+  +  +  +  + S + +   +  N N   
Sbjct: 92  L--------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 727 VGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKS 786
           +      G S                          + L+ N  Q  I         L  
Sbjct: 144 IERNSFVGLSFESV---------------------ILWLNKNGIQE-IHNSAFNGTQLDE 181

Query: 787 LNISHNNLTGCIPS-SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQ 841
           LN+S NN    +P+      +    LD+S  ++       L +L  L   +  N +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
                 ++    IP       +   L      L      +     +LE +++S N +   
Sbjct: 13  VFLCQESKVTE-IPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 822 IP----TQLASLNYLSVLNLSNNQLE 843
           I     + L  L+ + +     N L 
Sbjct: 70  IEADVFSNLPKLHEIRIEK--ANNLL 93

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSS-LRNLTELESLDLS 814
           +      +     + +            L+ + IS N++   I +    NL +L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 815 -SNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            +N L    P    +L  L  L +SN  ++
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  112 bits (283), Expect = 2e-26
 Identities = 78/477 (16%), Positives = 143/477 (29%), Gaps = 101/477 (21%)

Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFS----GHIPSSFSNLQQLCYLDLD 244
           ++ LD+Q         A L   + Q   + L     +      I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 245 DNHF----VGEIPASLGNNITQLAYLDLSSNGFS----GHIPSSFSNLQQLLWLNLEYNN 296
            N      V  +   L     ++  L L +   +    G + S+   L  L  L+L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 297 F----VGKIPDMF-TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVEL 351
                +  + +       +L  L L Y  L  +    +  +L                  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL------------------ 166

Query: 352 YDFAKLKNLKVLSLSNISLS------VSTKLTANSSFPNLSALDLSACNISE-----FPD 400
                  + K L++SN  ++      +   L  +     L AL L +C ++         
Sbjct: 167 ---RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGVTSDNCRDLCG 221

Query: 401 NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHL 460
            + ++  L  L L  N++G        D+G+  L    L  +            L  L +
Sbjct: 222 IVASKASLRELALGSNKLG--------DVGMAELCPGLLHPS----------SRLRTLWI 263

Query: 461 DSNSLQ-------GSLPDLPPHMVSFSISNNSLTGEIPSSFCNL-----SSIQYLDLSNN 508
               +          +      +   S++ N L  E     C         ++ L + + 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 509 SLSGQIPQCLG-----NSTLETLDLRMNNFQGSIPQTNAKG-----CKLTYLRLSGNHL- 557
           S +             N  L  L +  N  + +  +   +G       L  L L+   + 
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 558 -EG--PLPPSLTNCVKLQFLDVGNNNLSGQIPECLG------NSTLQVLDMRMNNFS 605
                 L  +L     L+ LD+ NN L       L          L+ L +    +S
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  107 bits (269), Expect = 1e-24
 Identities = 76/458 (16%), Positives = 138/458 (30%), Gaps = 85/458 (18%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSF----IGHIPSSFSNLHQLRHLDL 194
            +  LD+     + +    L   + Q   + L            I S+      L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 195 QSNNF----VGKIPASLGNNITQLAYLDLSSNSFS----GHIPSSFSNLQQLCYLDLDDN 246
           +SN      V  +   L     ++  L L +   +    G + S+   L  L  L L DN
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 247 HF----VGEIPASLGNNITQLAYLDLSSNGFS----GHIPSSFSNLQQLLWLNLEYNNF- 297
                 +  +   L +   +L  L L     S      + S          L +  N+  
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 298 ---VGKIPDMF-TNLTQLSFLGLAYNEL----IGSIPSSIFELLNLTEIYLSFSNF--SG 347
              V  +      +  QL  L L    +       +   +    +L E+ L  +     G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 348 SVELYDFAKLKN--LKVLSLSNISLS------VSTKLTANSSFPNLSALDLSACNISE-- 397
             EL       +  L+ L +    ++      +   L A  S   L  L L+   + +  
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES---LKELSLAGNELGDEG 300

Query: 398 ---FPDNLRTQH-QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453
                + L     QLE L +                       + L++N          +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFT--------AACCSHFSSV-LAQN----------R 341

Query: 454 NLEYLHLDSNSLQGS--------LPDLPPHMVSFSISNNSLTGE----IPSSFCNLSSIQ 501
            L  L + +N L+ +        L      +    +++  ++      + ++     S++
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 502 YLDLSNNSLSGQIPQCLG------NSTLETLDLRMNNF 533
            LDLSNN L       L          LE L L    +
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 70/366 (19%), Positives = 116/366 (31%), Gaps = 80/366 (21%)

Query: 358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQHQLELLD 412
            +++ L +    LS +              + L  C ++E         LR    L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 413 LSENQIGGRIPSWMWDIGVH-----------TLIELDLSRNFLT--SIDHLPW-----KN 454
           L  N++G        D+GVH            + +L L    LT      L         
Sbjct: 63  LRSNELG--------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 455 LEYLHLDSNSLQGS--------LPDLPPHMVSFSISNNSLTGE----IPSSFCNLSSIQY 502
           L+ LHL  N L  +        L D    +    +   SL+      + S        + 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 503 LDLSNNSLSGQ----IPQCLGNS--TLETLDLRMNNFQ----GSIPQTNAKGCKLTYLRL 552
           L +SNN ++      + Q L +S   LE L L            +    A    L  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 553 SGNHL---------EGPLPPSLTNCVKLQFLDVGNNNLSGQ----IPECLG-NSTLQVLD 598
             N L          G L PS      L+ L +    ++ +    +   L    +L+ L 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSR----LRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 599 MRMNNFSGSLPQTFAKS-----CVLVSLNLNGNRLKG----PLPPSLVNCQYLEVLDVGN 649
           +  N       +   ++     C L SL +                L   ++L  L + N
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 650 NQIDDT 655
           N+++D 
Sbjct: 351 NRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 75/413 (18%), Positives = 130/413 (31%), Gaps = 85/413 (20%)

Query: 478 SFSISNNSLTGEIPSSFC-NLSSIQYLDLSNNSLSGQIPQCLG-----NSTLETLDLRMN 531
           S  I    L+    +     L   Q + L +  L+    + +      N  L  L+LR N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 532 NFQGSIPQTNAKG-----CKLTYLRLSGNHL--EG--PLPPSLTNCVKLQFLDVGNNNLS 582
                      +G     CK+  L L    L   G   L  +L     LQ L + +N L 
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

Query: 583 GQIPECLG------NSTLQVLDMRMNNFS----GSLPQTFAKSCVLVSLNLNGNRLKGP- 631
               + L          L+ L +   + S      L            L ++ N +    
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186

Query: 632 ---LPPSLVNCQY-LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRV 687
              L   L +    LE L + +  +        D   +L   I+ S              
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVTS------DNCRDL-CGIVASK------------- 226

Query: 688 PFPKLRIMDCSHNQLT--GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745
               LR +    N+L   G+  L        ++H ++    +  + +           +T
Sbjct: 227 --ASLRELALGSNKLGDVGMAELC-----PGLLHPSSR---LRTLWI--WECG-----IT 269

Query: 746 MKGIDL--QMERILTTFATIDLSSNRFQ----RKIPEVVGKLN-SLKSLNISHNNLT--G 796
            KG     ++ R   +   + L+ N       R + E + +    L+SL +   + T   
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 797 C--IPSSLRNLTELESLDLSSNKL----AGRIPTQLASLNY-LSVLNLSNNQL 842
           C    S L     L  L +S+N+L       +   L      L VL L++  +
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 7e-16
 Identities = 68/358 (18%), Positives = 122/358 (34%), Gaps = 68/358 (18%)

Query: 106 SSLFFLPRLRKLNLAFNDFNGS---KISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNI 162
           S+L  LP L++L+L+ N    +    +  G  D    L  L L  C+ + +    L    
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA--- 163

Query: 163 TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNF----VGKIPASLGNNITQLAYLD 218
                             S        + L + +N+     V  +   L ++  QL  L 
Sbjct: 164 ------------------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 219 LSSNSFS----GHIPSSFSNLQQLCYLDLDDNHF----VGEIPASLGNNITQLAYLDLSS 270
           L S   +      +    ++   L  L L  N      + E+   L +  ++L  L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 271 NGFS----GHIPSSFSNLQQLLWLNLEYNNF----VGKIPD-MFTNLTQLSFLGLAYNEL 321
            G +    G +       + L  L+L  N         + + +     QL  L +     
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 322 IGSIPSSIFELL----NLTEIYLSFSNF--SGSVELYDFAKLKN--LKVLSLSNISLS-- 371
             +  S    +L     L E+ +S +    +G  EL          L+VL L++  +S  
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

Query: 372 ----VSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQH-QLELLDLSENQIG 419
               ++  L AN    +L  LDLS   + +       +++R     LE L L +    
Sbjct: 386 SCSSLAATLLAN---HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 65/374 (17%), Positives = 121/374 (32%), Gaps = 71/374 (18%)

Query: 520 NSTLETLDLRMNNFQ-GSIPQTNAKGCKLTYLRLSGNHL--EG--PLPPSLTNCVKLQFL 574
           +  +++LD++          +      +   +RL    L       +  +L     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 575 DVGNNNLSGQ----IPECLG--NSTLQVLDMRMNNFS----GSLPQTFAKSCVLVSLNLN 624
           ++ +N L       + + L   +  +Q L ++    +    G L  T      L  L+L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 625 GNRLKGPLPPSL------VNCQYLEVLDVGNNQIDDTFPYWLDVLLE----LQVLILRSN 674
            N L       L        C+ LE L +    +       L  +L      + L + +N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 675 RFWGPIGDTKTR-------VPFPKLRIMDCSHNQLT--GVLPLWYLESFKAMMHGNNNSV 725
                I +   R           +L  +      +T      L         +  +  S+
Sbjct: 181 D----INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-------CGIVASKASL 229

Query: 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERIL---TTFATIDLSSNRFQ----RKIPEVV 778
               + L   SN      L   G+      +L   +   T+ +            +  V+
Sbjct: 230 R--ELAL--GSNK-----LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 779 GKLNSLKSLNISHNNLTG----CIPSSLRN-LTELESLDLSSNKL----AGRIPTQLASL 829
               SLK L+++ N L       +  +L     +LESL + S            + LA  
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 830 NYLSVLNLSNNQLE 843
            +L  L +SNN+LE
Sbjct: 341 RFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 61/383 (15%), Positives = 107/383 (27%), Gaps = 98/383 (25%)

Query: 498 SSIQYLDLSNNSLS--GQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
             IQ LD+    LS              + + L                CK         
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-------TEARCK--------- 46

Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQ----IPECLG--NSTLQVLDMRMNNFS---- 605
                +  +L     L  L++ +N L       + + L   +  +Q L ++    +    
Sbjct: 47  ----DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL------VNCQYLEVLDVGNNQIDDTFPYW 659
           G L  T      L  L+L+ N L       L        C+ LE L +    +       
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAASCEP 161

Query: 660 LDVLLE----LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFK 715
           L  +L      + L + +N     I +   RV    L+   C    L             
Sbjct: 162 LASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEAL------------- 204

Query: 716 AMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL--QMERILTTFATIDLSSNRFQ-- 771
             +                         +T         +     +   + L SN+    
Sbjct: 205 -KLESCG---------------------VTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 772 --RKIPEVVGKLN-SLKSLNISHNNLT--GC--IPSSLRNLTELESLDLSSNKL----AG 820
              ++   +   +  L++L I    +T  GC  +   LR    L+ L L+ N+L    A 
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 821 RIPTQLASLNY-LSVLNLSNNQL 842
            +   L      L  L + +   
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSF 325

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  108 bits (271), Expect = 5e-26
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 10/204 (4%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
            S   ++ C      ++PP L  + T    L LS N       ++     +L  L+L   
Sbjct: 10  ASHLEVN-CDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
             + K+       +  L  LDLS N     +P     L  L  LD+  N     +P    
Sbjct: 66  E-LTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
             + +L  L L  N      P   +   +L  L+L  NN       +   L  L  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 318 YNELIGSIPSSIFELLNLTEIYLS 341
            N L  +IP   F    L   +L 
Sbjct: 181 ENSL-YTIPKGFFGSHLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 182 SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL 241
             S +     ++    N    +P  L  + T    L LS N       ++     +L  L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301
           +LD    + ++       +  L  LDLS N     +P     L  L  L++ +N      
Sbjct: 61  NLDRAE-LTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 302 PDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNL 360
                 L +L  L L  NEL  ++P  +      L ++ L+ +N +  +       L+NL
Sbjct: 117 LGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 361 KVLSLSNISLS 371
             L L   SL 
Sbjct: 175 DTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 47/195 (24%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           ++P +           L+L+ N       S      +  LT L+L     T  +      
Sbjct: 28  DLPKD--------TTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELT-KLQV--DG 74

Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
            +  L  LDLS N  +  +P     L  L  LD+  N     +P      + +L  L L 
Sbjct: 75  TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132

Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
            N      P   +   +L  L L +N+   E+PA L N +  L  L L  N     IP  
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 281 FSNLQQLLWLNLEYN 295
           F     L +  L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 57/252 (22%), Positives = 90/252 (35%), Gaps = 45/252 (17%)

Query: 305 FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLS 364
            + +     +      L  ++P  + +  + T ++LS  N   +  L        L  L+
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLS-ENLLYTFSLATLMPYTRLTQLN 61

Query: 365 LSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPS 424
           L    L   TKL  + + P L  LDLS   +   P   +T   L +LD+S N++   +P 
Sbjct: 62  LDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPL 117

Query: 425 WMWDIGVHTLIELDLSRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSF 479
                G+  L EL L  N L ++        P   LE L L +N+L   LP         
Sbjct: 118 GALR-GLGELQELYLKGNELKTLPPGLLTPTP--KLEKLSLANNNLT-ELP--------- 164

Query: 480 SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ 539
                            L ++  L L  NSL        G+  L    L  N +  +   
Sbjct: 165 -----------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN--- 210

Query: 540 TNAKGCKLTYLR 551
                C++ Y R
Sbjct: 211 -----CEILYFR 217

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 54/252 (21%), Positives = 77/252 (30%), Gaps = 63/252 (25%)

Query: 611 TFAKSCVLVSLNLNGNRLKGPLPPSL-VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
             +K    + +N +   L   LPP L  +     +L +  N +       L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 670 ILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY 729
            L        +   +     P L  +D SHNQL          S   +            
Sbjct: 61  NLDRAE----LTKLQVDGTLPVLGTLDLSHNQLQ---------SLPLLGQT--------- 98

Query: 730 MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE-VVGKLNSLKSLN 788
                                      L     +D+S NR    +P   +  L  L+ L 
Sbjct: 99  ---------------------------LPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

Query: 789 ISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIP 847
           +  N L    P  L    +LE L L++N L   +P  L   L  L  L L  N L   IP
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IP 188

Query: 848 GGPQFNTFGNDS 859
            G     FG+  
Sbjct: 189 KG----FFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 43/207 (20%)

Query: 516 QCLGNSTLETLDLRMNNFQGSIPQ---TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQ 572
             + +     ++    N   ++P     +      T L LS N L      +L    +L 
Sbjct: 7   SKVAS--HLEVNCDKRNLT-ALPPDLPKD-----TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 573 FLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
            L++    L+ ++        L  LD+  N    SLP        L  L+++ NRL   L
Sbjct: 59  QLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115

Query: 633 PP----SLVNCQYLEVLDVGNNQI----DDTFPYWLDVLLELQVLILRSNRFWGPIGDTK 684
           P      L     L+ L +  N++                +L+ L L +N          
Sbjct: 116 PLGALRGLGE---LQELYLKGNELKTLPPGLL----TPTPKLEKLSLANNNL-------- 160

Query: 685 TRVP------FPKLRIMDCSHNQLTGV 705
           T +P         L  +    N L  +
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 33/153 (21%)

Query: 97  WLHGN-IPSNSSLF-FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSI 154
            L  N + S   L   LP L  L+++FN     +++                      S+
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFN-----RLT----------------------SL 115

Query: 155 PPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQ 213
           P      + +L  L L  N  +  +P    +   +L  L L +NN   ++PA L N +  
Sbjct: 116 PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN 246
           L  L L  NS    IP  F     L +  L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 40/232 (17%), Positives = 65/232 (28%), Gaps = 64/232 (27%)

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG-PLPPSLVNCQYLEVLDVGNN 650
               +L +  N        T      L  LNL+   L    +  +L     L  LD+ +N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV---LGTLDLSHN 87

Query: 651 QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP------FPKLRIMDCSHNQLTG 704
           Q+  + P     L  L VL +  NR         T +P        +L+ +    N+L  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK- 137

Query: 705 VLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATID 764
            LP                                  +                    + 
Sbjct: 138 TLP--------------------------------PGLL-----------TPTPKLEKLS 154

Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L++N        ++  L +L +L +  N+L   IP        L    L  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  100 bits (251), Expect = 7e-24
 Identities = 42/229 (18%), Positives = 90/229 (39%), Gaps = 15/229 (6%)

Query: 146 CSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIP 204
            +C     IP SL  +      L L     +  IPS +FSNL  +  + +  +  + ++ 
Sbjct: 18  VTCKDIQRIP-SLPPSTQ---TLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLE 72

Query: 205 ASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPA-SLGNNITQ 262
           +    N++++ ++++ +     +I       L  L +L + +       P  +   +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

Query: 263 LAYLDLSSNGFSGHIPS-SFSNLQ-QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
              L+++ N +   IP  +F  L  + L L L  N F   +     N T+L  + L  N+
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK 190

Query: 321 LIGSIPSSIFELL--NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
            +  I    F  +    + + +S ++ + ++       LK L   +   
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 33/211 (15%), Positives = 74/211 (35%), Gaps = 11/211 (5%)

Query: 110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD 169
             P  + L L         I S      P+++ + +        +      N++++ +++
Sbjct: 29  LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 170 LSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPA-SLGNNITQLAYLDLSSNSFSGH 227
           +     + +I       L  L+ L +  N  +   P  +   +      L+++ N +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGI-FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 228 IPS-SFSNLQ-QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS-SFSNL 284
           IP  +F  L  +   L L +N F   +     N  T+L  + L+ N +   I   +F  +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 285 QQLL-WLNLEYNNFVGKIPDMFTNLTQLSFL 314
                 L++   +          +L +L   
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 19/216 (8%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
             ++       IPS   + Q L    L   +        F+NL  +S + ++ +  +  +
Sbjct: 16  FRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 326 PSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPN 384
            S  F  L  +T I +  +     ++     +L  LK L + N  L +   LT   S   
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 385 LSALDLSACN-ISEFPDNL--RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
              L+++    ++  P N      ++   L L  N     +  + ++ G   L  + L++
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFN-GTK-LDAVYLNK 188

Query: 442 N-FLTSI-----DHLPWKNLEYLHLDSNSLQGSLPD 471
           N +LT I       +       L +   S+  +LP 
Sbjct: 189 NKYLTVIDKDAFGGVY-SGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 18/232 (7%)

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS-SFCNLSSIQYLDLSNNSLSG 512
             E   +    +Q  +P LPP   +  +    L   IPS +F NL +I  + +S +    
Sbjct: 12  QEEDFRVTCKDIQ-RIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 513 QIPQCL--GNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEG-PLPPSLTNC 568
           Q+        S +  +++R       I     K    L +L +    L+  P    + + 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 569 VKLQFLDVGNNNLSGQIPE----CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLN 624
                L++ +N     IP      L N     L +  N F+ S+         L ++ LN
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 625 GNRLKGPLPPSLVN--CQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
            N+    +             +LDV    +    P     L  L+ LI R+ 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 762 TIDLSSNRFQRKIPEVV-GKLNSLKSLNISHNNLTGCIPSS-LRNLTELESLDLSSNKLA 819
            I +S +   +++       L+ +  + I +      I    L+ L  L+ L + +  L 
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 820 GRIP--TQLASLNYLSVLNLSNNQLEGPIPGG 849
              P  T++ S +   +L +++N     IP  
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 762 TIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIP--SSLRNLTELESLDLSSNKL 818
            I++ + R    I  + + +L  LK L I +  L    P  + + +      L+++ N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142

Query: 819 AGRIPTQ-LASL-NYLSVLNLSNNQLE 843
              IP      L N    L L NN   
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 50/231 (21%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDV-GNNQIDDTFPYWLDVLLELQVLILRSNRF 676
             +L L    L+     +  N   +  + V  +  +     +    L ++  + +R+ R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 677 WGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSS 736
              I D       P L+ +   +  L     L  + S                       
Sbjct: 93  LTYI-DPDALKELPLLKFLGIFNTGLKMFPDLTKVYS----------------------- 128

Query: 737 NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV--GKLNSLKSLNISHNNL 794
                                  F  ++++ N +   IP     G  N   +L + +N  
Sbjct: 129 --------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASL-NYLSVLNLSNNQLE 843
           T  +     N T+L+++ L+ NK    I       + +  S+L++S   + 
Sbjct: 169 TS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 99.3 bits (248), Expect = 5e-23
 Identities = 51/236 (21%), Positives = 80/236 (33%), Gaps = 34/236 (14%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQ 195
             S   LDL S N    +      +  +L  LDLS    I  I    + +L  L  L L 
Sbjct: 27  PFSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 84

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
            N  +  +     + ++ L  L     + +        +L+ L  L++  N         
Sbjct: 85  GNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-------- 135

Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF-- 313
               I                +P  FSNL  L  L+L  N            L Q+    
Sbjct: 136 ----IQSF------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 314 --LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
             L L+ N  +  I    F+ + L E+ L  +N   SV    F +L +L+ + L  
Sbjct: 180 LSLDLSLNP-MNFIQPGAFKEIRLKELALD-TNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 21/225 (9%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           N+P +         + L+L+FN      + S     FP L +LDL  C    +I      
Sbjct: 25  NLPFS--------TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ 73

Query: 161 NITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
           +++ L+ L L+ N  I  +   +FS L  L+ L     N    +      ++  L  L++
Sbjct: 74  SLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 220 SSNSF-SGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY----LDLSSNGFS 274
           + N   S  +P  FSNL  L +LDL  N     I  +    + Q+      LDLS N  +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 275 GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
              P +F  + +L  L L+ N        +F  LT L  + L  N
Sbjct: 191 FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 57/265 (21%)

Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
           +P S       ++LDL  N     + +    +  +L  LDLS          ++ +L  L
Sbjct: 26  LPFS------TKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF- 297
             L L  N  +  +     + ++ L  L       +        +L+ L  LN+ +N   
Sbjct: 79  STLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKL 357
             K+P+ F+NLT L  L L+ N+ I SI  +                            L
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL------------------------RVL 172

Query: 358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQ 417
             + +L+LS                     LDLS   ++        + +L+ L L  NQ
Sbjct: 173 HQMPLLNLS---------------------LDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211

Query: 418 IGGRIPSWMWDIGVHTLIELDLSRN 442
           +   +P  ++D  + +L ++ L  N
Sbjct: 212 L-KSVPDGIFD-RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 55/270 (20%), Positives = 88/270 (32%), Gaps = 68/270 (25%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           +IP +L  +      LDLS N        SF +  +L  L+L            + +L+ 
Sbjct: 21  KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
           LS L L  N +  S+    F  L +L ++         S+E +    LK LK L++++  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
           +           F NL+ L+                                        
Sbjct: 136 I---QSFKLPEYFSNLTNLE---------------------------------------- 152

Query: 430 GVHTLIELDLSRNFLTSIDH--------LPWKNLEYLHLDSNSLQGSLPD---LPPHMVS 478
                  LDLS N + SI          +P  NL  L L  N +   +         +  
Sbjct: 153 ------HLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508
            ++  N L       F  L+S+Q + L  N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 44/237 (18%)

Query: 433 TLIELDLSRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLT 487
           +   LDLS N L  +        P   L+ L L    +Q ++                  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQ-TIE----------------- 68

Query: 488 GEIPSSFCNLSSIQYLDLSNN---SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKG 544
                ++ +LS +  L L+ N   SL+      L +  L+ L     N   S+       
Sbjct: 69  ---DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVETNLA-SLENFPIGH 122

Query: 545 C-KLTYLRLSGNHL-EGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC----LGN--STLQV 596
              L  L ++ N +    LP   +N   L+ LD+ +N +   I       L         
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           LD+ +N  +   P  F +   L  L L+ N+LK            L+ + +  N  D
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 37/242 (15%)

Query: 444 LTSI-DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQY 502
              I D+LP  + + L L  N L+  L                       SF +   +Q 
Sbjct: 19  FYKIPDNLP-FSTKNLDLSFNPLR-HLG--------------------SYSFFSFPELQV 56

Query: 503 LDLSNNSLSGQIPQ--CLGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEG 559
           LDLS   +   I        S L TL L  N  Q S+      G   L  L     +L  
Sbjct: 57  LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS 114

Query: 560 PLPPSLTNCVKLQFLDVGNNNL-SGQIPECLGNST-LQVLDMRMNNFSGSLPQ-TFAK-- 614
                + +   L+ L+V +N + S ++PE   N T L+ LD+  N    S+         
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 615 --SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
               + +SL+L+ N +   + P       L+ L +  NQ+        D L  LQ + L 
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 673 SN 674
           +N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 52/247 (21%), Positives = 79/247 (31%), Gaps = 77/247 (31%)

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI----DDTFPYWLDVLLELQVLILRSNR 675
           +L+L+ N L+     S  +   L+VLD+   +I    D  +      L  L  LIL  N 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNP 87

Query: 676 --------FWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV 727
                   F G             L+ +      L                         
Sbjct: 88  IQSLALGAFSGL----------SSLQKLVAVETNLA------------------------ 113

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQR-KIPEVVGKLNSLKS 786
               L                        L T   ++++ N  Q  K+PE    L +L+ 
Sbjct: 114 ---SLE------NFPI-----------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 787 LNISHNNLTGCIPSSLRNLTELE----SLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
           L++S N +     + LR L ++     SLDLS N +   I         L  L L  NQL
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

Query: 843 EGPIPGG 849
           +  +P G
Sbjct: 213 KS-VPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 45/278 (16%), Positives = 72/278 (25%), Gaps = 81/278 (29%)

Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSG 606
              L LS N L      S  +  +LQ LD+    +   I                     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE-------------------- 68

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKGPLPPSL-VNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
                +     L +L L GN ++  L          L+ L      +     + +  L  
Sbjct: 69  --DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 666 LQVLILRSNRFWGPIGDTKTRVPFP-------KLRIMDCSHNQLTGVLPLWYLESFKAMM 718
           L+ L +  N               P        L  +D S N++  +         + + 
Sbjct: 126 LKELNVAHNLI--------QSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLH 173

Query: 719 HGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVV 778
                                    + +  + L            DLS N     I    
Sbjct: 174 Q------------------------MPLLNLSL------------DLSLNPMNF-IQPGA 196

Query: 779 GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
            K   LK L +  N L          LT L+ + L +N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 64/260 (24%)

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP----SLVNCQYLEVLDV 647
            + + LD+  N        +F     L  L+L+   ++  +      SL +   L  L +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH---LSTLIL 83

Query: 648 GNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPF---PKLRIMDCSHNQLTG 704
             N I          L  LQ L+            +    P      L+ ++ +HN +  
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 705 VLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATID 764
                  +  +   +                                     LT    +D
Sbjct: 138 -----SFKLPEYFSN-------------------------------------LTNLEHLD 155

Query: 765 LSSNRFQRKIPEVVGKLNSLK----SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
           LSSN+ Q      +  L+ +     SL++S N +   I         L+ L L +N+L  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKS 214

Query: 821 RIPTQLASLNYLSVLNLSNN 840
                   L  L  + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLNLSNNQ 841
           S K+L++S N L      S  +  EL+ LDLS  ++   I      SL++LS L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 842 L 842
           +
Sbjct: 88  I 88

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.5 bits (240), Expect = 8e-22
 Identities = 64/347 (18%), Positives = 106/347 (30%), Gaps = 50/347 (14%)

Query: 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHI 277
           +  S +FS   P   S    L   D+       E+     +    L  +D  ++      
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADV-------ELYGGGRSLEYLLKRVDTEADLGQFTD 63

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE 337
                +L++L        + +         ++ L  L L   E+ G+ P  + E      
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE 397
             L+  N S +      A+L+                        P L  L ++  +   
Sbjct: 124 NILNLRNVSWATRDAWLAELQQW--------------------LKPGLKVLSIAQAHSLN 163

Query: 398 FPDNL-RTQHQLELLDLSENQIGGRIPSW--MWDIGVHTLIELDLSRNFLTSIDHLPWKN 454
           F     R    L  LDLS+N   G       +  +   TL  L L    + +   +    
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 455 LEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC-NLSSIQYLDLSNNSLSGQ 513
                     LQ              +S+NSL     +  C   S +  L+LS   L  Q
Sbjct: 224 AAAR----VQLQ-----------GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP 560
           +P+ L  + L  LDL  N    +         ++  L L GN     
Sbjct: 268 VPKGLP-AKLSVLDLSYNRLDRNPSPDELP--QVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.0 bits (231), Expect = 1e-20
 Identities = 48/232 (20%), Positives = 78/232 (33%), Gaps = 14/232 (6%)

Query: 102 IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG--SIPPSLG 159
           +     +  +  L++L L   +  G+          P L +L+L + ++    +    L 
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 160 NNI-TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIP---ASLGNNITQLA 215
             +   L  L ++    +            L  LDL  N  +G+     A        L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 216 YLDLSSN---SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
            L L +    + SG   +  +   QL  LDL  N       A   +  +QL  L+LS  G
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
                    + L     L+L YN      P     L Q+  L L  N  + S
Sbjct: 265 LKQVPKGLPAKLS---VLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.5 bits (227), Expect = 4e-20
 Identities = 63/341 (18%), Positives = 105/341 (30%), Gaps = 56/341 (16%)

Query: 144 DLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKI 203
           + CSCNF+   P               + N         +     L +L  + +      
Sbjct: 11  ESCSCNFSDPKPDW-----------SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLG 59

Query: 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFS---NLQQLCYLDLDDNHFVGEIPASLGNNI 260
             +       L  L + +      I         +  L  L L++    G  P  L    
Sbjct: 60  QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119

Query: 261 -TQLAYLDLSSNGFSGHIPSSFSNLQQLL-----WLNLEYNNFVGKIPDMFTNLTQLSFL 314
              L  L+L +  ++    +  + LQQ L      L++   + +    +       LS L
Sbjct: 120 GPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST 374
            L+ N  +G                                K   L+VL+L N  +   +
Sbjct: 179 DLSDNPELGERGLISALCPL---------------------KFPTLQVLALRNAGMETPS 217

Query: 375 KLTANS--SFPNLSALDLSACNISEFPDNLRTQH--QLELLDLSENQIGGRIPSWMWDIG 430
            + +    +   L  LDLS  ++ +           QL  L+LS   +  ++P  +    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--- 273

Query: 431 VHTLIELDLSRNFLTSI---DHLPWKNLEYLHLDSNSLQGS 468
              L  LDLS N L      D LP   +  L L  N    S
Sbjct: 274 -AKLSVLDLSYNRLDRNPSPDELP--QVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 52/218 (23%), Positives = 79/218 (36%), Gaps = 16/218 (7%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNG--SKISSGFTDQFPSLTLLDLCSC 148
           L L    + G  P        P L  LNL    +    + ++       P L +L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 149 NFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS----NLHQLRHLDLQSNNF--VGK 202
           +   +           L+ LDLS N  +G      +        L+ L L++        
Sbjct: 160 HSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIP-SSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
           + ++L     QL  LDLS NS        S     QL  L+L       ++P  L     
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---A 274

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299
           +L+ LDLS N      P S   L Q+  L+L+ N F+ 
Sbjct: 275 KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 58/314 (18%), Positives = 90/314 (28%), Gaps = 65/314 (20%)

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP----ECLGNSTLQVLDMRMNN 603
             L+      +      +   + L+ L V    +  +I       LG S LQ L +    
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 604 FSGSLPQTFAKSCV--LVSLNLNGNRLKG--PLPPSLVNC--QYLEVLDVGNNQIDDTFP 657
            +G+ P    ++    L  LNL              L       L+VL +      +   
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVP--FPKLRIMDCSHNQLTGVLPLWYLESFK 715
             + V   L  L L  N   G  G      P  FP L+++   +  +             
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME------------ 214

Query: 716 AMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIP 775
                                        T  G+   +         +DLS N  +    
Sbjct: 215 -----------------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 776 EVV-GKLNSLKSLNISHNNLT---GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 831
                  + L SLN+S   L      +P+       L  LDLS N+L  R P     L  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAK------LSVLDLSYNRLD-RNP-SPDELPQ 297

Query: 832 LSVLNLSNNQLEGP 845
           +  L+L  N     
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 64/318 (20%)

Query: 519 GNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLRLSGNHLEGPLPPS---LTNCVKLQFL 574
           G  +LE L  R++        T+  K   L  L +    +   +      +     LQ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 575 DVGNNNLSGQIPECLGNST---LQVLDMRMNNFSGSLPQTFAKSCV----LVSLNLNGNR 627
            + N  ++G  P  L  +T   L +L++R  +++                L  L++    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 628 LKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW----LDVLLELQVLILRSNRFWGPIGDT 683
                   +     L  LD+ +N                   LQVL LR+     P G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 684 KTRV-PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                   +L+ +D SHN L         +    +                         
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS----------------------- 257

Query: 743 FLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL 802
                               ++LS    + ++P+  G    L  L++S+N L    PS  
Sbjct: 258 --------------------LNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDR-NPSPD 293

Query: 803 RNLTELESLDLSSNKLAG 820
             L ++ +L L  N    
Sbjct: 294 E-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 22/231 (9%)

Query: 642 LEVLDVGNNQIDDTFPYWLDVL--LELQVLILRSNRF-WGPIGDTKTRVPFPKLRIMDCS 698
           LE L    +   D   +  D++  L L+ L +R+ R     +      +    L+ +   
Sbjct: 45  LEYLLKRVDTEADLGQF-TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 699 HNQLTGVLPLWYLESFKAMMHG---NNNSVEVGYMRLPGSSNYYES-------IFLTMKG 748
           + ++TG  P   LE+    ++     N S       L     + +               
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 749 IDLQMERILTTFATIDLSSNRFQRKIPE----VVGKLNSLKSLNISHNNLT---GCIPSS 801
              +  R+    +T+DLS N    +          K  +L+ L + +  +    G   + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 802 LRNLTELESLDLSSNKLAGRIPTQLAS-LNYLSVLNLSNNQLEGPIPGGPQ 851
                +L+ LDLS N L            + L+ LNLS   L+    G P 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.3 bits (244), Expect = 3e-21
 Identities = 55/286 (19%), Positives = 96/286 (33%), Gaps = 27/286 (9%)

Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
                  +    +L        +  +    +  +  +  +++     +      L  +  
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 69

Query: 290 LNLEYNNFVGKIPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
           L L  N    K+ D+   TNL  L +L L  N+ I  + SS+ +L  L  + L  +  S 
Sbjct: 70  LFLNGN----KLTDIKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS- 122

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ 407
             ++     L  L+ L L N  +   T +T  S    L  L L    IS+    L    +
Sbjct: 123 --DINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTK 176

Query: 408 LELLDLSENQIGGRIPSWMWDIGVHT-LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ 466
           L+ L LS+N I     S +  +     L  L+L      +       NL   +   N   
Sbjct: 177 LQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN-TD 230

Query: 467 GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
           GSL               ++   +P     +S I Y  ++      
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 4e-20
 Identities = 52/336 (15%), Positives = 116/336 (34%), Gaps = 49/336 (14%)

Query: 170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP 229
           +++++ I  I        +    +L+  +    +  +    +  +  +  +++     + 
Sbjct: 5   ITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK-SV- 58

Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
                L  +  L L+             N +T +                  +NL+ L W
Sbjct: 59  QGIQYLPNVTKLFLNG------------NKLTDI---------------KPLTNLKNLGW 91

Query: 290 LNLEYNNFVGKIPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
           L L+ N    KI D+    +L +L  L L +N  I  I + +  L  L  +YL  +  + 
Sbjct: 92  LFLDEN----KIKDLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT- 144

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ 407
             ++   ++L  L  LSL +  +   + +   +    L  L LS  +IS+    L     
Sbjct: 145 --DITVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKN 198

Query: 408 LELLDLSENQIGGRIPSWMWDIGV-HTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ 466
           L++L+L   +   +  +   ++ V +T+   D S      I          +        
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 467 GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQY 502
             +  +    V+   +     G +      + ++ Y
Sbjct: 259 NEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 5e-20
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 17/235 (7%)

Query: 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE 409
           +++           +L   S+   T     +   ++  +  +  +I      ++    + 
Sbjct: 13  QIFPDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVT 68

Query: 410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGS 468
            L L+ N++   I        +  L  L L  N +  +  L   K L+ L L+ N +   
Sbjct: 69  KLFLNGNKL-TDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS-D 123

Query: 469 LPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETL 526
           +  L   P + S  + NN +T    +    L+ +  L L +N +S  I    G + L+ L
Sbjct: 124 INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNL 180

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
            L  N+          K   L  L L             +N V    +   + +L
Sbjct: 181 YLSKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 7e-17
 Identities = 59/296 (19%), Positives = 108/296 (36%), Gaps = 23/296 (7%)

Query: 87  HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
             I  +L       ++    +   L  + ++    +D     +        P++T L L 
Sbjct: 22  ETIKDNLK----KKSVTDAVTQNELNSIDQIIANNSDI--KSVQ--GIQYLPNVTKLFL- 72

Query: 147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPAS 206
           + N    I P    N+  L +L L  N  I  + SS  +L +L+ L L+ N  +  I   
Sbjct: 73  NGNKLTDIKPL--TNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG-ISDING- 126

Query: 207 LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266
              ++ QL  L L +N  +    +  S L +L  L L+DN     +P +    +T+L  L
Sbjct: 127 -LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNL 180

Query: 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
            LS N  S     + + L+ L  L L     + K  +  +NL   + +      L+    
Sbjct: 181 YLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 327 SSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF 382
            S         +      F+  V    +  +   K  +  +  ++   K     S+
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 7e-16
 Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 434 LIELDLSRNFLTSIDHLP-WKNLEYLHLDSNSLQG--SLPDLPPHMVSFSISNNSLTGEI 490
           + E       +  I     +      +L   S+    +  +L   +     +N+ +   +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIK-SV 58

Query: 491 PSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYL 550
                 L ++  L L+ N L+  I        L  L L  N  +      + K  KL  L
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLK--KLKSL 114

Query: 551 RLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-LQVLDMRMNNFSGSLP 609
            L  N +   +   L +  +L+ L +GNN ++      L   T L  L +  N  S  + 
Sbjct: 115 SLEHNGISD-ING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
              A    L +L L+ N +      +L   + L+VL++ + +  +        L+    +
Sbjct: 170 P-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 670 ILRSN 674
                
Sbjct: 227 KNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 46/254 (18%), Positives = 96/254 (37%), Gaps = 38/254 (14%)

Query: 594 LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
               +++  + + ++ Q    S  +  +  N + +K  +   +     +  L +  N++ 
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT 78

Query: 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713
           D  P  L  L  L  L L  N+    I D  +     KL+ +   HN ++ +  L +L  
Sbjct: 79  DIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 132

Query: 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRK 773
            +++  GNN   +     +   S                    LT   T+ L  N+    
Sbjct: 133 LESLYLGNNKITD-----ITVLSR-------------------LTKLDTLSLEDNQI-SD 167

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           I  +   L  L++L +S N+++     +L  L  L+ L+L S +   +     ++L   +
Sbjct: 168 IVPL-AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 834 VLNLSNNQLEGPIP 847
            +  ++  L  P  
Sbjct: 225 TVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 1e-13
 Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 37/302 (12%)

Query: 503 LDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN---HLEG 559
               +  +  QI      +     +L+  +   ++ Q       +  +  + +    ++G
Sbjct: 4   TITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG 60

Query: 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFS-----GSLPQTFAK 614
                +     +  L +  N L+  I        L  L +  N          L +    
Sbjct: 61  -----IQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK---- 110

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
              L SL+L  N +   +   LV+   LE L +GNN+I D     L  L +L  L L  N
Sbjct: 111 ---LKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN 163

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPG 734
           +    I D        KL+ +  S N ++ +  L  L++   +   +   +         
Sbjct: 164 Q----ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ-- 217

Query: 735 SSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794
                  +  T+K  D  +          D      +  +PE   +++ +    ++    
Sbjct: 218 ---SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

Query: 795 TG 796
             
Sbjct: 275 KA 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 57/309 (18%), Positives = 115/309 (37%), Gaps = 22/309 (7%)

Query: 233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292
             L     +    ++    +  +   ++  +  L     G +  I      L  L+ L L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLEL 70

Query: 293 EYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELY 352
             +N +  +     NLT+++ L L+ N L     S+I  L ++  + L+ +  +   ++ 
Sbjct: 71  -KDNQITDLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQIT---DVT 123

Query: 353 DFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLD 412
             A L NL+VL L    +   T ++  +   NL  L +    +S+    L    +L  L 
Sbjct: 124 PLAGLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLK 179

Query: 413 LSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQG-SLP 470
             +N+I   I        +  LIE+ L  N ++ +  L    NL  + L + ++    + 
Sbjct: 180 ADDNKISD-ISPL---ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF 235

Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRM 530
                +V   +   S     P++  +  +    +L+ N  S         +   T     
Sbjct: 236 YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTT 295

Query: 531 NNFQGSIPQ 539
             F G++ Q
Sbjct: 296 VPFSGTVTQ 304

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 4e-20
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 24/263 (9%)

Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
            +     +    ++       + ++L  +  L       V  I       +  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSA-FGTGVTTIEGV--QYLNNLIGLELK 71

Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
            N  +  + +   NL ++  L+L  N  +  + A     +  +  LDL+S   +    + 
Sbjct: 72  DNQIT-DL-APLKNLTKITELELSGNP-LKNVSAI--AGLQSIKTLDLTSTQITD--VTP 124

Query: 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340
            + L  L  L L+ N  +  I      LT L +L +   + +  + + +  L  LT +  
Sbjct: 125 LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKA 180

Query: 341 SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD 400
             +  S   ++   A L NL  + L N  +   + ++  ++  NL  + L+   I+  P 
Sbjct: 181 DDNKIS---DISPLASLPNLIEVHLKNNQI---SDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 401 NLRTQHQLELLDLSENQIGGRIP 423
                  L + ++ +   G  I 
Sbjct: 235 FYNN--NLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 28/311 (9%)

Query: 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
             L     +    +N    +  +   ++  +  L       +  I      L  L  L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLEL 70

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
            DN      P     N+T++  L+LS N       S+ + LQ +  L+L         P 
Sbjct: 71  KDNQITDLAPLK---NLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 304 MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVL 363
               L+ L  L L  N+ I +I S +  L NL  + +  +  S   +L   A L  L  L
Sbjct: 125 -LAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTL 178

Query: 364 SLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIP 423
              +  +   + ++  +S PNL  + L    IS+    L     L ++ L+       I 
Sbjct: 179 KADDNKI---SDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT----IT 230

Query: 424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISN 483
           +       + ++   +       I   P    +     S +L  +L     + VS++ + 
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPIA--PATISDNGTYASPNLTWNLTSFINN-VSYTFNQ 287

Query: 484 NSLTGEIPSSF 494
           +         F
Sbjct: 288 SVTFKNTTVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.1 bits (224), Expect = 9e-20
 Identities = 55/305 (18%), Positives = 112/305 (36%), Gaps = 31/305 (10%)

Query: 355 AKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLS 414
             L N   ++    ++   T     +    ++ L      ++     ++  + L  L+L 
Sbjct: 16  PALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELK 71

Query: 415 ENQIGGRIPSWMWDI----GVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSNSLQG-- 467
           +NQI         D+     +  + EL+LS N L ++  +   ++++ L L S  +    
Sbjct: 72  DNQIT--------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 468 SLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLD 527
            L  L  ++    +  N +T  I S    L+++QYL + N  +S  +      S L TL 
Sbjct: 124 PLAGL-SNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLK 179

Query: 528 LRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE 587
              N      P  +     L  + L  N +       L N   L  + + N  ++   P 
Sbjct: 180 ADDNKISDISPLASLP--NLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT-NQPV 234

Query: 588 CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDV 647
              N+ +    ++  + +   P T + +    S NL  N        + V+  + + +  
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSF---INNVSYTFNQSVTF 291

Query: 648 GNNQI 652
            N  +
Sbjct: 292 KNTTV 296

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 31/270 (11%)

Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
               +   +     N T ++  +   ++  +  L       +  I      L+ L  L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTG-VTTI-EGVQYLNNLIGLEL 70

Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
           + N  +  +      N+T++  L+LS N       S+ + LQ +  LDL     + ++  
Sbjct: 71  KDNQ-ITDLAPL--KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ-ITDVTP 124

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM--FTNLTQLS 312
                ++ L  L L  N  + +I S  + L  L +L++       ++ D+    NL++L+
Sbjct: 125 L--AGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLT 176

Query: 313 FLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN----- 367
            L    N+ I  I S +  L NL E++L  +  S   ++   A   NL +++L+N     
Sbjct: 177 TLKADDNK-ISDI-SPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITN 231

Query: 368 ISLSVSTKLTANSSFPNLSALDLSACNISE 397
             +  +  L   +     S   ++   IS+
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 42/271 (15%)

Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSL 465
               +   ++ +   +        +  +  L      +T+I+ + +  NL  L L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 466 QGSLPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTL 523
              L  L     +    +S N L     S+   L SI+ LDL++  ++  +    G S L
Sbjct: 76  T-DLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT-DVTPLAGLSNL 131

Query: 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
           + L L +N      P        L YL +    +   L P L N  KL  L   +N +S 
Sbjct: 132 QVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS- 186

Query: 584 QIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLE 643
            I        L  + ++ N  S                              L N   L 
Sbjct: 187 DISPLASLPNLIEVHLKNNQISDV--------------------------SPLANTSNLF 220

Query: 644 VLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
           ++ + N  I +   ++ + L+   V+   S 
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 18/230 (7%)

Query: 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF 533
            + +  +   +++T     +  +L  I  L      ++  I      + L  L+L+ N  
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI 75

Query: 534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST 593
               P  N    K+T L LSGN L+     ++     ++ LD+ +  ++  +    G S 
Sbjct: 76  TDLAPLKNLT--KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTPLAGLSN 130

Query: 594 LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
           LQVL + +N  +   P   A    L  L++   ++   L P L N   L  L   +N+I 
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186

Query: 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
           D  P  L  L  L  + L++N+    I D         L I+  ++  +T
Sbjct: 187 DISP--LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 47/289 (16%)

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI---- 429
             +  + +  N   +     N+++          +  L      +          I    
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVT--------TIEGVQ 60

Query: 430 GVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
            ++ LI L+L  N +T +  L     +  L L  N L+             ++S      
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-------------NVSA----- 102

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLT 548
                   L SI+ LDL++  ++  +    G S L+ L L +N      P        L 
Sbjct: 103 -----IAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISPLAGLT--NLQ 154

Query: 549 YLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL 608
           YL +    +   L P L N  KL  L   +N +S  I        L  + ++ N  S   
Sbjct: 155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVS 211

Query: 609 PQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657
           P   A +  L  + L    +     P   N   +    V         P
Sbjct: 212 P--LANTSNLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 56/304 (18%), Positives = 108/304 (35%), Gaps = 44/304 (14%)

Query: 79  VTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFP 138
           +  D A  + I +         N+    +   L  +  L+        + I         
Sbjct: 12  IFPDPALANAIKIAAG----KSNVTDTVTQADLDGITTLSAFGTGV--TTIE--GVQYLN 63

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
           +L  L+L     T  + P    N+T++  L+LS N  + ++ S+ + L  ++ LDL ++ 
Sbjct: 64  NLIGLELKDNQIT-DLAPL--KNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDL-TST 117

Query: 199 FVGKIPA----------SLGNN----------ITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
            +  +             L  N          +T L YL + +   S  + +  +NL +L
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKL 175

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
             L  DDN  + +I      ++  L  + L +N  S    S  +N   L  + L      
Sbjct: 176 TTLKADDNK-ISDISPL--ASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT 230

Query: 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVEL-YDFAKL 357
            +      NL   + +       I   P++I +        L+++  S    + Y F + 
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFINNVSYTFNQS 288

Query: 358 KNLK 361
              K
Sbjct: 289 VTFK 292

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 47/301 (15%), Positives = 97/301 (32%), Gaps = 63/301 (20%)

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFS 605
               +    +++      +  +   +  L      ++  I      + L  L+++ N  +
Sbjct: 20  NAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQIT 76

Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
              P        +  L L+GN LK     ++   Q ++ LD+ + QI D  P  L  L  
Sbjct: 77  DLAPLKNLTK--ITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725
           LQVL L  N+    I +         L+ +   + Q++ + PL  L              
Sbjct: 131 LQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT---------- 176

Query: 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK 785
                                               T+    N+    I  +   L +L 
Sbjct: 177 ------------------------------------TLKADDNKI-SDISPL-ASLPNLI 198

Query: 786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP 845
            +++ +N ++    S L N + L  + L++  +  +      +L   +V+   +     P
Sbjct: 199 EVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 846 I 846
            
Sbjct: 257 A 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 649 NNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
              I+  FP     L     +    +     + DT T+     +  +      +T +  +
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTGVTTIEGV 59

Query: 709 WYLESFKAMMHGNNNSVEVGYMRLPGSSN--YYESIFLTMKGI-DLQMERILTTFATIDL 765
            YL +    +   +N +      L    N      + L+   + ++     L +  T+DL
Sbjct: 60  QYLNNLI-GLELKDNQIT----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 766 SSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ 825
           +S +     P  +  L++L+ L +  N +T    S L  LT L+ L + + +++   P  
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 826 LASLNYLSVLNLSNNQLE 843
           LA+L+ L+ L   +N++ 
Sbjct: 169 LANLSKLTTLKADDNKIS 186

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
           IP+        + LDLQSN     +P+   + +T+L  L L+ N         F  L+ L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNF 297
             L + DN     +P  + + +  LA L L  N     +P   F +L +L +L+L YN  
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAK 356
                 +F  LT L  L L  N+L   +P   F+ L  L  + L  +N    V    F  
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKL-DNNQLKRVPEGAFDS 203

Query: 357 LKNLKVLSLSN 367
           L+ LK+L L  
Sbjct: 204 LEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQ 195
                 LDL S   + S+P    + +T+L  L L+ N  +  +P+  F  L  L  L + 
Sbjct: 36  PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPA 254
            N     +P  + + +  LA L L  N     +P   F +L +L YL L  N     +P 
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
            + + +T L  L L +N        +F  L +L  L L+ N         F +L +L  L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 315 GLAYN 319
            L  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 15/196 (7%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           NIP++         +KL+L  N    S + S    +   L LL L       ++P  +  
Sbjct: 34  NIPAD--------TKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK 82

Query: 161 NITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
            +  L  L ++ N  +  +P   F  L  L  L L  N     +P  + +++T+L YL L
Sbjct: 83  ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
             N         F  L  L  L L +N  +  +P    + +T+L  L L +N        
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 280 SFSNLQQLLWLNLEYN 295
           +F +L++L  L L+ N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 68/257 (26%)

Query: 262 QLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
               +D SS   +  IPS+  ++ ++L   +L+ N         F  LT+L  L L  N+
Sbjct: 17  NKNSVDCSSKKLTA-IPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 321 LIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANS 380
           L  ++P+ IF                         +LKNL+ L +++  L     L    
Sbjct: 73  L-QTLPAGIF------------------------KELKNLETLWVTDNKL---QALPIG- 103

Query: 381 SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
            F  L                      L  L L  NQ+   +P  ++D  +  L  L L 
Sbjct: 104 VFDQLV--------------------NLAELRLDRNQL-KSLPPRVFD-SLTKLTYLSLG 141

Query: 441 RNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLP----DLPPHMVSFSISNNSLTGEIP 491
            N L S+     D L   +L+ L L +N L+  +P    D    + +  + NN L     
Sbjct: 142 YNELQSLPKGVFDKLT--SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 492 SSFCNLSSIQYLDLSNN 508
            +F +L  ++ L L  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 39/231 (16%)

Query: 433 TLIELDLSRNFLTSI-DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIP 491
               +D S   LT+I  ++P  + + L L SN L  SLP                     
Sbjct: 17  NKNSVDCSSKKLTAIPSNIPA-DTKKLDLQSNKLS-SLP--------------------S 54

Query: 492 SSFCNLSSIQYLDLSNN---SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKG-CKL 547
            +F  L+ ++ L L++N   +L   I + L N  LETL +  N  Q ++P         L
Sbjct: 55  KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN--LETLWVTDNKLQ-ALPIGVFDQLVNL 111

Query: 548 TYLRLSGNHLEGPLPPSL-TNCVKLQFLDVGNNNLSGQIPE----CLGNSTLQVLDMRMN 602
             LRL  N L+  LPP +  +  KL +L +G N L   +P+     L +  L+ L +  N
Sbjct: 112 AELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS--LKELRLYNN 167

Query: 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
                    F K   L +L L+ N+LK     +  + + L++L +  N  D
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 78/235 (33%)

Query: 637 VNCQY-------------LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDT 683
           V+C                + LD+ +N++          L +L++L L  N+        
Sbjct: 21  VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL------- 73

Query: 684 KTRVP------FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
              +P         L  +  + N+L                     ++ +G         
Sbjct: 74  -QTLPAGIFKELKNLETLWVTDNKLQ--------------------ALPIG--------- 103

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE-VVGKLNSLKSLNISHNNLTG 796
               +F             L   A + L  N+ +  +P  V   L  L  L++ +N L  
Sbjct: 104 ----VF-----------DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ- 146

Query: 797 CIPSSL-RNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIPGG 849
            +P  +   LT L+ L L +N+L  R+P      L  L  L L NNQL+  +P G
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 48/234 (20%), Positives = 73/234 (31%), Gaps = 72/234 (30%)

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI----DDTFPYWLDVLLELQVLILRSNR 675
            L+L  N+L      +      L +L + +N++       F      L  L+ L +  N+
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNK 96

Query: 676 --------FWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV 727
                   F               L  +    NQL                     S+  
Sbjct: 97  LQALPIGVFDQL----------VNLAELRLDRNQLK--------------------SLPP 126

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE-VVGKLNSLKS 786
                         +F             LT    + L  N  Q  +P+ V  KL SLK 
Sbjct: 127 R-------------VF-----------DSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKE 161

Query: 787 LNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 840
           L + +N L      +   LTEL++L L +N+L         SL  L +L L  N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 13/184 (7%)

Query: 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
           S      +  L   +    I  +    +  L Y+ L++ + +  + +       +  L +
Sbjct: 20  STFKAYLNGLL-GQSSTANITEA---QMNSLTYITLANINVT-DL-TGIEYAHNIKDLTI 73

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
           ++ H     P S    ++ L  L +     +     + S L  L  L++ ++     I  
Sbjct: 74  NNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 304 MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVL 363
               L +++ + L+YN  I  I   +  L  L  + + F       +         L  L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQL 186

Query: 364 SLSN 367
              +
Sbjct: 187 YAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292
           S  +      L  +     I  +    +  L Y+ L++   +  + +       +  L +
Sbjct: 20  STFKAYLNGLLGQSS-TANITEA---QMNSLTYITLANINVT-DL-TGIEYAHNIKDLTI 73

Query: 293 EYNNFVGKIPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
                     +    + L+ L  L +   ++      ++  L +LT + +S S    S  
Sbjct: 74  NNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-I 128

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410
           L     L  +  + LS       T +    + P L +L++    + ++   +    +L  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQ 185

Query: 411 LDLSENQIGG 420
           L      IGG
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           + L+      N+   + + +   ++ L +           SG +    +L  L +   + 
Sbjct: 49  ITLANI----NVTDLTGIEYAHNIKDLTINNIHATNYNPISGLS----NLERLRIMGKDV 100

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
           T    P+L + +T L  LD+S ++    I +  + L ++  +DL  N  +  I   L   
Sbjct: 101 TSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247
             +L  L++  +           +  +L  L      
Sbjct: 159 -PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 477 VSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP-QCLGNSTLETLDLRMNNFQG 535
           ++  +  +S       +   ++S+ Y+ L+N +++     +   N  ++ L +   +   
Sbjct: 26  LNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNIHATN 80

Query: 536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST-L 594
             P +      L  LR+ G  +     P+L+    L  LD+ ++     I   +     +
Sbjct: 81  YNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654
             +D+  N     +         L SLN+  + +       + +   L  L   +  I  
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM--FTNLTQLSFLGLAY 318
           +          G S     + + +  L ++ L   N    + D+        +  L +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLTINN 75

Query: 319 NELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA 378
                +  + I  L NL  + +   + + S ++ + + L +L +L +S+ +   S  LT 
Sbjct: 76  IH-ATNY-NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDS-ILTK 131

Query: 379 NSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELD 438
            ++ P ++++DLS          L+T  +L+ L++  + +                    
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD------------------ 173

Query: 439 LSRNFLTSIDHLPWKNLEYLHLDSNSLQG 467
                   I+  P   L  L+  S ++ G
Sbjct: 174 -----YRGIEDFP--KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 50/204 (24%)

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL 413
            A++ +L  ++L+NI++   T LT      N+  L ++  + + + + +     LE L +
Sbjct: 40  EAQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRI 95

Query: 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP 473
               +                     + + + ++  L   +L  L +             
Sbjct: 96  MGKDV---------------------TSDKIPNLSGL--TSLTLLDI------------- 119

Query: 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF 533
                   S+++    I +    L  +  +DLS N     I        L++L+++ +  
Sbjct: 120 --------SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 534 QGSIPQTNAKGCKLTYLRLSGNHL 557
                  +    KL  L      +
Sbjct: 172 HDYRGIEDFP--KLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L+    + +            +  L SL  L+ISH+     I + +  L ++ S+DLS N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 817 KLAGRIPTQLASLNYLSVLNLSNNQL 842
                I   L +L  L  LN+  + +
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 97  WLHGN-IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIP 155
            ++     + + +  L  L +L +   D    KI +       SLTLLD+       SI 
Sbjct: 72  TINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN--LSGLTSLTLLDISHSAHDDSIL 129

Query: 156 PSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215
             + N + ++  +DLS N  I  I      L +L+ L++Q +  V         +  +L 
Sbjct: 130 TKI-NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG-VHDYRGI--EDFPKLN 184

Query: 216 YLDLSSNSFSG 226
            L   S +  G
Sbjct: 185 QLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            + +++          +  L++L+ L I   ++T     +L  LT L  LD+S +     
Sbjct: 70  DLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 822 IPTQLASLNYLSVLNLSNNQL 842
           I T++ +L  ++ ++LS N  
Sbjct: 128 ILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 25/225 (11%), Positives = 64/225 (28%), Gaps = 56/225 (24%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
            ++  L  +         + +   L  + + N  + D     ++    ++ L + +    
Sbjct: 25  YLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINNIH-- 77

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
               +         L  +      +T       + +                        
Sbjct: 78  --ATNYNPISGLSNLERLRIMGKDVTSDK----IPNLSG--------------------- 110

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
                              LT+   +D+S +     I   +  L  + S+++S+N     
Sbjct: 111 -------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
           I   L+ L EL+SL++  + +       +     L+ L   +  +
Sbjct: 152 I-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 36/181 (19%)

Query: 546 KLTYLRLSGN---HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMN 602
            LTY+ L+      L G     +     ++ L + N + +                   N
Sbjct: 45  SLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATN-----------------YN 82

Query: 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDV 662
             SG L         L  L + G  +     P+L     L +LD+ ++  DD+    ++ 
Sbjct: 83  PISG-LSN-------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 663 LLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNN 722
           L ++  + L  N     I D       P+L+ ++   + +     +        +   + 
Sbjct: 135 LPKVNSIDLSYNGA---ITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

Query: 723 N 723
            
Sbjct: 192 T 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           + +   I L++      +   +   +++K L I++ + T    + +  L+ LE L +   
Sbjct: 43  MNSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGK 98

Query: 817 KLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
            +       L+ L  L++L++S++  +  I 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 55/289 (19%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
            S     +    +L        +  +    +  +  +  +++     +      L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 290 LNLEYNNFVGKIPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
           L L  N    K+ D+    NL  L +L L  N+ +  + SS+ +L  L  + L  +  S 
Sbjct: 73  LFLNGN----KLTDIKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS- 125

Query: 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ 407
             ++     L  L+ L L N  +   T +T  S    L  L L    IS+    L    +
Sbjct: 126 --DINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTK 179

Query: 408 LELLDLSENQIGGRIPSWMWDI----GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSN 463
           L+ L LS+N I         D+    G+  L  L+L      +       NL   +   N
Sbjct: 180 LQNLYLSKNHIS--------DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 464 SLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
              GSL               ++   +P     +S I Y  ++      
Sbjct: 232 -TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 279

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 17/235 (7%)

Query: 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE 409
           +++           +L   S+   T     +   ++  +  +  +I      ++    + 
Sbjct: 16  QIFSDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVT 71

Query: 410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGS 468
            L L+ N++   I        +  L  L L  N +  +  L   K L+ L L+ N +   
Sbjct: 72  KLFLNGNKL-TDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-D 126

Query: 469 LPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETL 526
           +  L   P + S  + NN +T    +    L+ +  L L +N +S  I    G + L+ L
Sbjct: 127 INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNL 183

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
            L  N+          K   L  L L             +N V    +   + +L
Sbjct: 184 YLSKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 47/240 (19%)

Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240
            S     +    +L+  +    +  +    +  +  +  +++     +      L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
           L L+ N             +T +                  +NL+ L WL L+ N    K
Sbjct: 73  LFLNGNK------------LTDI---------------KPLANLKNLGWLFLDEN----K 101

Query: 301 IPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
           + D+    +L +L  L L +N  I  I + +  L  L  +YL  +  +   ++   ++L 
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT---DITVLSRLT 156

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
            L  LSL +  +   + +   +    L  L LS  +IS+    L     L++L+L   + 
Sbjct: 157 KLDTLSLEDNQI---SDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 24/274 (8%)

Query: 87  HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
             I  +L       ++    +   L  + ++    +D     +        P++T L L 
Sbjct: 25  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDI--KSVQ--GIQYLPNVTKLFL- 75

Query: 147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPAS 206
           + N    I P    N+  L +L L  N  +  + SS  +L +L+ L L+ N  +  I   
Sbjct: 76  NGNKLTDIKPL--ANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNG-ISDINGL 130

Query: 207 LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266
              ++ QL  L L +N  +    +  S L +L  L L+DN     +P +    +T+L  L
Sbjct: 131 --VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNL 183

Query: 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIP 326
            LS N  S  +  + + L+ L  L L     + K  +  +NL   + +      L+    
Sbjct: 184 YLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 327 SSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNL 360
            S         +      F+  V  + F +   +
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTNEVS-FIFYQPVTI 274

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 34/242 (14%)

Query: 434 LIELDLSRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
            I+ +L +  +T         +++ +  +++ ++             S+           
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-------------SVQG--------- 63

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
               L ++  L L+ N L+  I        L  L L  N  +      + K  KL  L L
Sbjct: 64  -IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSLKDLK--KLKSLSL 119

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF 612
             N +       L +  +L+ L +GNN ++  I      + L  L +  N  S  +    
Sbjct: 120 EHNGIS--DINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIVP-L 174

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
           A    L +L L+ N +       L   + L+VL++ + +  +        L+    +   
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 673 SN 674
             
Sbjct: 233 DG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 45/252 (17%), Positives = 96/252 (38%), Gaps = 38/252 (15%)

Query: 594 LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
               +++  + + ++ Q    S  +  +  N + +K  +   +     +  L +  N++ 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT 81

Query: 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713
           D  P  L  L  L  L L  N+    + D  +     KL+ +   HN ++ +  L +L  
Sbjct: 82  DIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRK 773
            +++  GNN   +     +   S                    LT   T+ L  N+    
Sbjct: 136 LESLYLGNNKITD-----ITVLSR-------------------LTKLDTLSLEDNQI-SD 170

Query: 774 IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 833
           I  +   L  L++L +S N+++     +L  L  L+ L+L S +   +     ++L   +
Sbjct: 171 IVPL-AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 834 VLNLSNNQLEGP 845
            +  ++  L  P
Sbjct: 228 TVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 25/196 (12%)

Query: 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLS 582
               +L+  +   ++ Q       +  +  + + ++  +   +     +  L +  N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT 81

Query: 583 GQIPECLGNSTLQVLDMRMNNFS-----GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLV 637
             I        L  L +  N          L +       L SL+L  N +       LV
Sbjct: 82  -DIKPLANLKNLGWLFLDENKVKDLSSLKDLKK-------LKSLSLEHNGIS--DINGLV 131

Query: 638 NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDC 697
           +   LE L +GNN+I D     L  L +L  L L  N+    I D        KL+ +  
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYL 185

Query: 698 SHNQLTGVLPLWYLES 713
           S N ++ +  L  L++
Sbjct: 186 SKNHISDLRALAGLKN 201

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 58/195 (29%)

Query: 649 NNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
              I   F    D   E     L+       + D  T+     +  +  +++ +  V  +
Sbjct: 11  PTPIKQIFS--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIKSVQGI 64

Query: 709 WYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSN 768
            YL +                                                 + L+ N
Sbjct: 65  QYLPNVT----------------------------------------------KLFLNGN 78

Query: 769 RFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 828
           +    I + +  L +L  L +  N +     SSL++L +L+SL L  N +       L  
Sbjct: 79  KL-TDI-KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGI--SDINGLVH 132

Query: 829 LNYLSVLNLSNNQLE 843
           L  L  L L NN++ 
Sbjct: 133 LPQLESLYLGNNKIT 147

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 49/335 (14%), Positives = 94/335 (28%), Gaps = 77/335 (22%)

Query: 378 ANSSFPNLSALDLSACNISE-----FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGV- 431
           A  S   +    L    I+          L     ++ + LS N IG             
Sbjct: 2   ARFS---IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--------TEAAR 50

Query: 432 ---------HTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482
                      L   + S  F   +     + L  L     +L        P + +  +S
Sbjct: 51  WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL---LQALLKC-----PKLHTVRLS 102

Query: 483 NNSLTGEIPSSFCNL----SSIQYLDLSNNSLS--------------GQIPQCLGNSTLE 524
           +N+          +     + +++L L NN L                   +      L 
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162

Query: 525 TLDLRMNNFQG----SIPQTNAKGCKLTYLRLSGNHL-----EGPLPPSLTNCVKLQFLD 575
           ++    N  +        +T      L  +++  N +     E  L   L  C +L+ LD
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 576 VGNNNLSGQ----IPECL-GNSTLQVLDMRMNNFSGSLPQTFAKS------CVLVSLNLN 624
           + +N  +      +   L     L+ L +     S         +        L +L L 
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 625 GNRLKGP----LPPSL-VNCQYLEVLDVGNNQIDD 654
            N ++      L   +      L  L++  N+  +
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 60/358 (16%), Positives = 111/358 (31%), Gaps = 76/358 (21%)

Query: 518 LGNSTLETLDLRMNNFQG----SIPQTNAKGCKLTYLRLSGNHL--EG--PLPPSLTNCV 569
           +   ++E   L+++        S+     +   +  + LSGN +  E    L  ++ +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL- 628
            L+  +  +        E                    L Q   K   L ++ L+ N   
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALR-------------LLLQALLKCPKLHTVRLSDNAFG 107

Query: 629 -KG--PLPPSLVNCQYLEVLDVGNNQIDDTFPYWL-DVLLELQVLILRSNRFWGPIGDTK 684
                PL   L     LE L + NN +       +   L EL V     N          
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA--------- 158

Query: 685 TRVPFPKLRIMDCSHNQLT--GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
                P LR + C  N+L    +          A    ++  +    M      N     
Sbjct: 159 -----PPLRSIICGRNRLENGSMKEW-------AKTFQSHRLLHTVKM----VQN----- 197

Query: 743 FLTMKGIDLQMERIL---TTFATIDLSSNRFQRK----IPEVVGKLNSLKSLNISHNNLT 795
            +  +GI+  +   L        +DL  N F       +   +    +L+ L ++   L+
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 796 --GC--IPSSLRNL--TELESLDLSSNKL----AGRIPTQLASLNY-LSVLNLSNNQL 842
             G   +  +   L    L++L L  N++       + T +      L  L L+ N+ 
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 45/311 (14%), Positives = 89/311 (28%), Gaps = 61/311 (19%)

Query: 114 LRKLNLAFNDFN--GSKISSGFTDQFPSLTLLDLCSCNFTG----SIPPSLGNNITQLAY 167
           +   +L  +       K       +  S+  + L            +  ++ +    L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEI 64

Query: 168 LDLSINSFIG-----------HIPSSFSNLHQLRHLDLQSNNF----VGKIPASLGNNIT 212
            + S   F G            +  +     +L  + L  N F       +   L  + T
Sbjct: 65  AEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-T 122

Query: 213 QLAYLDLSSNSFS-------------GHIPSSFSNLQQLCYLDLDDNHF----VGEIPAS 255
            L +L L +N                  +     N   L  +    N      + E   +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 256 LGNNITQLAYLDLSSN-----GFSGHIPSSFSNLQQLLWLNLEYNNF----VGKIPDMFT 306
             ++   L  + +  N     G    +    +  Q+L  L+L+ N F       +     
Sbjct: 183 FQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 307 NLTQLSFLGLAYNEL----IGSIPSSIFELLN--LTEIYLSFSNFS--GSVELYDF--AK 356
           +   L  LGL    L      ++  +  +L N  L  + L ++         L      K
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 357 LKNLKVLSLSN 367
           + +L  L L+ 
Sbjct: 302 MPDLLFLELNG 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 46/260 (17%)

Query: 106 SSLFFLPRLRKLNLAFNDFN---GSKISSGFTDQFPSLTLLDLCSCNFT----------- 151
            +L   P+L  + L+ N F       +    +     L  L L +               
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 152 -GSIPPSLGNNITQLAYLDLSINSF----IGHIPSSFSNLHQLRHLDLQSNNF-----VG 201
                     N   L  +    N      +     +F +   L  + +  N         
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 202 KIPASLGNNITQLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHF----VGEIP 253
            +   L     +L  LDL  N+F+      +  +  +   L  L L+D          + 
Sbjct: 207 LLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 254 ASLGNNI-TQLAYLDLSSNGFSG----HIPSSF-SNLQQLLWLNLEYNNF------VGKI 301
            +        L  L L  N         + +     +  LL+L L  N F      V +I
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325

Query: 302 PDMFTNLTQLSFLGLAYNEL 321
            ++F+   +     L   E 
Sbjct: 326 REVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 783 SLKSLNISHNNLTG----CIPSSLRNLTELESLDLSSNKL----AGRIPTQLASLNYLSV 834
           S++  ++  + +T      + + L     ++ + LS N +    A  +   +AS   L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 835 LNLSNNQLEGPIPGGPQ 851
              S+          P+
Sbjct: 65  AEFSDIFTGRVKDEIPE 81

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 18/210 (8%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
                +               N +  +  +  + +  I  +      L  +R+L L  N 
Sbjct: 20  ETIKAN-LKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK 74

Query: 199 FVGKIPASLG--NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
                   +     +T L YL L+ N         F  L  L  L L +N     +P  +
Sbjct: 75  L-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLG 315
            + +T L YL+L+ N         F  L  L  L+L YN     +P+ +F  LTQL  L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLR 187

Query: 316 LAYNELIGSIPSSIFE-LLNLTEIYLSFSN 344
           L  N+L  S+P  +F+ L +L  I+L   N
Sbjct: 188 LYQNQL-KSVPDGVFDRLTSLQYIWL-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 47/186 (25%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 212 TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
            +    +L   S +    +  + L  +  +  +++             +  + YL L  N
Sbjct: 19  AETIKANLKKKSVT-DAVT-QNELNSIDQIIANNSDIKSVQGI---QYLPNVRYLALGGN 73

Query: 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF- 330
                  S+   L  L +L L  N        +F  LT L  L L  N+L  S+P  +F 
Sbjct: 74  KLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFD 130

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS-----VSTKLTANSSFPNL 385
           +L NLT + L+  N   S+    F KL NL  L LS   L      V  KLT       L
Sbjct: 131 KLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------QL 183

Query: 386 SALDLS 391
             L L 
Sbjct: 184 KDLRLY 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 63/254 (24%)

Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
            +    +L     +    +  + L  +  +    ++           L  + +L L  N+
Sbjct: 19  AETIKANLKKKSVT-DAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNK 74

Query: 321 LIGSIPSSIF-ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN 379
           L   I      EL NLT + L+ +    S+    F KL NLK L L    L     L   
Sbjct: 75  L-HDIS--ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL---QSLPDG 127

Query: 380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
                               D L     L  L+L+ NQ+   +P  ++D   + L ELDL
Sbjct: 128 ------------------VFDKLT---NLTYLNLAHNQLQ-SLPKGVFDKLTN-LTELDL 164

Query: 440 SRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF 494
           S N L S+     D L    L+ L L  N L+ S+PD                      F
Sbjct: 165 SYNQLQSLPEGVFDKLT--QLKDLRLYQNQLK-SVPD--------------------GVF 201

Query: 495 CNLSSIQYLDLSNN 508
             L+S+QY+ L +N
Sbjct: 202 DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 37/189 (19%)

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS---IDHLPWKNLEYLHLDSNSLQG 467
            +L +  +     +      ++++ ++  + + + S   I +L   N+ YL L  N L  
Sbjct: 24  ANLKKKSVT-DAVT---QNELNSIDQIIANNSDIKSVQGIQYL--PNVRYLALGGNKLH- 76

Query: 468 SLP--DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN---SLSGQIPQCLGNST 522
            +       ++    ++ N L       F  L++++ L L  N   SL   +   L N  
Sbjct: 77  DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-- 134

Query: 523 LETLDLRMNNFQGSIPQ------TNAKGCKLTYLRLSGNHLEGPLPP----SLTNCVKLQ 572
           L  L+L  N  Q S+P+      TN     LT L LS N L+  LP      LT    L+
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTN-----LTELDLSYNQLQS-LPEGVFDKLTQ---LK 184

Query: 573 FLDVGNNNL 581
            L +  N L
Sbjct: 185 DLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 48/242 (19%), Positives = 73/242 (30%), Gaps = 67/242 (27%)

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
               +  NL    +      +      ++ +   N+ I          L  ++ L L  N
Sbjct: 18  FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGI--QYLPNVRYLALGGN 73

Query: 675 RFWGPIGDTKTRVPFPKL---RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMR 731
           +               +L     +  + NQL                     S+  G   
Sbjct: 74  KL------HDISA-LKELTNLTYLILTGNQLQ--------------------SLPNG--- 103

Query: 732 LPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791
                     +F             LT    + L  N+ Q     V  KL +L  LN++H
Sbjct: 104 ----------VF-----------DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPT----QLASLNYLSVLNLSNNQLEGPIP 847
           N L          LT L  LDLS N+L   +P     +L  L  L    L  NQL+  +P
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR---LYQNQLKS-VP 197

Query: 848 GG 849
            G
Sbjct: 198 DG 199

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 522 TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG-PLPPSLTNCVKLQFLDVGNNN 580
                +L+  +        N     +  +  + + ++       L N   +++L +G N 
Sbjct: 20  ETIKANLKKKSVT-DAVTQNELN-SIDQIIANNSDIKSVQGIQYLPN---VRYLALGGNK 74

Query: 581 LSGQIPECLGNSTLQVLDMRMNNFSGSLPQT-FAKSCVLVSLNLNGNRLKGPLPP----S 635
           L   I      + L  L +  N    SLP   F K   L  L L  N+L+  LP      
Sbjct: 75  LH-DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDK 131

Query: 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
           L N   L  L++ +NQ+        D L  L  L L  N
Sbjct: 132 LTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 39/207 (18%)

Query: 146 CSCNFTG--SIPPSLGNNITQLAYLDLSINSFIGHIPS--SFSNLHQLRHLDLQSNNFVG 201
            SC+     ++P SL +       LDLS N+ +  + +  + + L  L  L L  N+ + 
Sbjct: 23  LSCSKQQLPNVPQSLPSYTA---LLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LN 77

Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
            I +     +  L YLDLSSN         FS+LQ L  L L +N               
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--------------- 122

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN---LTQLSFLGLAY 318
            +  +D           ++F ++ QL  L L  N       ++  +   L +L  L L+ 
Sbjct: 123 HIVVVD----------RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 319 NELIGSIPSSIFELL-NLTEIYLSFSN 344
           N+ +  +P +  + L    +  L   N
Sbjct: 173 NK-LKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 40/190 (21%)

Query: 382 FPNLSALDLSACNISEFPDNLRTQH--QLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
               + LDLS  N+S             L  L LS N +   I S  +   V  L  LDL
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV-PVPNLRYLDL 95

Query: 440 SRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF 494
           S N L ++       L    LE L L +N +   +                      ++F
Sbjct: 96  SSNHLHTLDEFLFSDLQ--ALEVLLLYNNHIV-VVD--------------------RNAF 132

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGN----STLETLDLRMNNFQGSIPQ---TNAKGCKL 547
            +++ +Q L LS N +S    + + +      L  LDL  N  +  +P            
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVK 191

Query: 548 TYLRLSGNHL 557
             L L  N L
Sbjct: 192 NGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 20/176 (11%)

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN--SS 381
           ++P S+        + LS +N S     +   +L NL  L LS+  L     +++     
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---NFISSEAFVP 86

Query: 382 FPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
            PNL  LDLS+ ++    +        LE+L L  N I   +    ++  +  L +L LS
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFE-DMAQLQKLYLS 144

Query: 441 RNFLTSI--------DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
           +N ++          + LP   L  L L SN L+         + ++  +   L  
Sbjct: 145 QNQISRFPVELIKDGNKLP--KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 36/194 (18%)

Query: 470 PDLPPHMVSFSISNNSLTGEIPS--SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLD 527
             LP +     +S+N+L+  + +  +   L+++  L LS+N L+  I     +     + 
Sbjct: 35  QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FIS----SEAFVPVP 88

Query: 528 LRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPP-SLTNCVKLQFLDVGNNNLSGQIP 586
                              L YL LS NHL   L     ++   L+ L + NN++   + 
Sbjct: 89  ------------------NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVD 128

Query: 587 ECL--GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSL---NLNGNRLKGPLPPSLVNCQY 641
                  + LQ L +  N  S    +       L  L   +L+ N+LK      L     
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 642 L--EVLDVGNNQID 653
                L + NN ++
Sbjct: 189 WVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           +     +DLSSN        +   L +L+ L + +N++     ++  ++ +L+ L LS N
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 817 KLAGRIPTQ----LASLNYLSVLNLSNNQLE 843
           +++ R P +       L  L +L+LS+N+L+
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 762 TIDLSSNRFQRKIPEVV-GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
            +DLS N   R   E    +L +L SL +SHN+L      +   +  L  LDLSSN L  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 821 RIPTQ-LASLNYLSVLNLSNNQLE 843
            +     + L  L VL L NN + 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
           ++ LS N       E    + +L+ L++S N+L         +L  LE L L +N +   
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 822 IPT-QLASLNYLSVLNLSNNQLE 843
           +       +  L  L LS NQ+ 
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP----SSLRNLTELESLDLSSNKLA 819
            L +N            +  L+ L +S N ++   P         L +L  LDLSSNKL 
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 820 GRIPTQLASLNYLSV--LNLSNNQL 842
               T L  L       L L NN L
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           LDLS + LH  +        L  L  L L  N      +     +    L  L L     
Sbjct: 93  LDLSSNHLH-TLDEFL-FSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 151 TGSIPPSL---GNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH--LDLQSNNF 199
           +   P  L   GN + +L  LDLS N       +    L       L L +N  
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 30/156 (19%)

Query: 563 PSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP--QTFAKSCVLVS 620
           P+   C     L      L   +P+ L + T  +LD+  NN S  L    T  +   L S
Sbjct: 13  PANCLCAS-NILSCSKQQLP-NVPQSLPSYT-ALLDLSHNNLS-RLRAEWTPTRLTNLHS 68

Query: 621 LNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQI----DDTFPYWLDVLLELQVLILRSNR 675
           L L+ N L   +   + V    L  LD+ +N +    +  F      L  L+VL+L +N 
Sbjct: 69  LLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLF----SDLQALEVLLLYNNH 123

Query: 676 FWGPIGDTKTRVP---F---PKLRIMDCSHNQLTGV 705
                      V    F    +L+ +  S NQ++  
Sbjct: 124 I--------VVVDRNAFEDMAQLQKLYLSQNQISRF 151

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 55/312 (17%), Positives = 103/312 (33%), Gaps = 73/312 (23%)

Query: 392 ACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP 451
           +  + EF       H +  LDLS N +          I    LI+   +    +      
Sbjct: 11  SNPVEEF---TSIPHGVTSLDLSLNNLY--------SISTVELIQA-FANTPAS------ 52

Query: 452 WKNLEYLHLDSNSLQGS--------LPDLPPHMVSFSISNNSLTGEIPSSFCNL-----S 498
              +  L+L  NSL           L  +P ++ S ++S N L+ +              
Sbjct: 53  ---VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 499 SIQYLDLSNNSLSGQIPQCLG------NSTLETLDLRMNNFQ--------GSIPQTNAKG 544
           +I  LDL  N  S +             +++ +L+LR N+            +       
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--- 166

Query: 545 CKLTYLRLSGNHL--EG--PLPPSL-TNCVKLQFLDVGNNNLSGQ----IPECLG--NST 593
             +  L L GN+L  +    L   L +    +  LD+  N L  +    +        + 
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 594 LQVLDMRMNNFSGS----LPQTFAKSCVLVSLNLNGNRLKGP-------LPPSLVNCQYL 642
           +  L++ +N   G     L         L ++ L+ + +K         L  +  N Q +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 643 EVLDVGNNQIDD 654
            ++D    +I  
Sbjct: 287 ILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 57/356 (16%), Positives = 109/356 (30%), Gaps = 54/356 (15%)

Query: 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS----IPPSLGNNITQLAYLDLSI 172
           +N       GS     FT     +T LDL   N        +  +  N    +  L+LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 173 NSF----IGHIPSSF-SNLHQLRHLDLQSNNF----VGKIPASLGNNITQLAYLDLSSNS 223
           NS        +     +    +  L+L  N        ++  +L      +  LDL  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 224 FSG----HIPSSFSNL-QQLCYLDLDDNHF----VGEIPASLGNNITQLAYLDLSSNGFS 274
           FS         +FSNL   +  L+L  N        E+   L      +  L+L  N  +
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 275 ----GHIPSSFSNL-QQLLWLNLEYNNF----VGKIPDMF-TNLTQLSFLGLAYNELIGS 324
                 +    +++   +  L+L  N        ++  +F +    +  L L  N L G 
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 325 IPSSIFELL----NLTEIYLSFSNFS--GSVELYDFAK----LKNLKVLSLSNISLSVS- 373
              ++  L     +L  +YL +         +          ++ + ++  +   +  S 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 374 ----TKLTANSSFPNLSALDLSACNISE------FPDNLRTQHQLELLDLSENQIG 419
               + L    S        L    +          ++L    +L     +   + 
Sbjct: 301 SIPISNLIRELSG-KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 56/346 (16%), Positives = 106/346 (30%), Gaps = 53/346 (15%)

Query: 184 SNLHQLRHLDLQSNNF----VGKIPASLGNNITQLAYLDLSSNSFS----GHIPSSF-SN 234
           S  H +  LDL  NN       ++  +  N    +  L+LS NS        +     + 
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 235 LQQLCYLDLDDNHF----VGEIPASLGNNITQLAYLDLSSNGFSG----HIPSSFSNL-Q 285
              +  L+L  N        E+  +L      +  LDL  N FS         +FSNL  
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 286 QLLWLNLEYNNF----VGKIPDMFTNL-TQLSFLGLAYNELIGSIPSSIFELL-----NL 335
            +  LNL  N+       ++  +   +   ++ L L  N L     + + + L     ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 336 TEIYLSFSNF--SGSVELYDFAKLKN--LKVLSLSNISLS---VSTKLTANSSFPNLSAL 388
           T + LS +        EL          +  L+L    L    +        S  +L  +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 389 DLSACNISEFPDN--------LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
            L    +                   ++ L+D +  +I               +  L   
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH--------PSHSIPISNLIRE 310

Query: 441 RNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSL 486
            +    +  L  + L  +    +       ++P  +     +   L
Sbjct: 311 LSGKADVPSLLNQCL--IFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 38/205 (18%)

Query: 113 RLRKLNLAFNDFN---GSKISSGFTDQFPSLTLLDLCSCNFTG----SIPPSLGNNITQL 165
            +  L+L +NDF+    S+    F++   S+T L+L   +        +   L      +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 166 AYLDLSINSF----IGHIPSSFSNLHQ-LRHLDLQSNNF----VGKIPASLGNNITQLAY 216
             L+L  N+        +    +++   +  LDL +N        ++     +    +  
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 217 LDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
           L+L  N   G    ++     +L+ L  + LD +            N+++     L    
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV---------KNMSKEQCKALG--- 277

Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNF 297
                 ++F N+Q+++ ++      
Sbjct: 278 ------AAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 59/393 (15%), Positives = 110/393 (27%), Gaps = 102/393 (25%)

Query: 496 NLSSIQYLDLSNNSLSGQIPQCLG------NSTLETLDLRMNNFQGSIPQTNAKG----- 544
               +  LDLS N+L       L        +++ +L+L  N+          +      
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
             +T L LSGN L                    ++ L   +       T+ VLD+  N+F
Sbjct: 80  ANVTSLNLSGNFLS----------------YKSSDELVKTLAAI--PFTITVLDLGWNDF 121

Query: 605 SGSLPQTFAK-----SCVLVSLNLNGNRLKGP----LPPSLVNCQ-YLEVLDVGNNQIDD 654
           S      F +        + SLNL GN L       L   L      +  L++  N +  
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 655 TFPYWLDVLLE-----LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW 709
                L   L      +  L L +N     +G                          L 
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANL----LGLK--------------------SYAEL- 216

Query: 710 YLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL--QMERILTTFATIDLSS 767
               F +      N V    +      N      L    ++    ++  L    T+ L  
Sbjct: 217 -AYIFSS----IPNHVVSLNL----CLNC-----LHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 768 NRFQRK-------IPEVVGKLNSLKSLNISHNNLTG----CIPSSLRNL-TELESLDLSS 815
           +  +         +      +  +  ++ +   +       I + +R L  + +   L +
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

Query: 816 NKL----AGRIPTQLASLN-YLSVLNLSNNQLE 843
             L      +   +  ++   L     +   L 
Sbjct: 323 QCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 48/325 (14%), Positives = 100/325 (30%), Gaps = 68/325 (20%)

Query: 565 LTNCVKLQFLDVGNNNLSGQIPECLG------NSTLQVLDMRMNNFSGSLPQTFAK---- 614
            +    +  LD+  NNL       L        +++  L++  N+          +    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 615 -SCVLVSLNLNGNRLKGP----LPPSLVNCQY-LEVLDVGNNQIDDTFPYWLDVLLE--- 665
               + SLNL+GN L       L  +L    + + VLD+G N                  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 666 --LQVLILRSNRFWGPIGDTKTRV-------PFPKLRIMDCSHNQLT--GVLPLWYLESF 714
             +  L LR N     +G   +             +  ++   N L              
Sbjct: 138 ASITSLNLRGND----LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC------AEL 187

Query: 715 KAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL---QMERILTTFATIDLSSNRFQ 771
              +     SV    +    S+N      L +K           I     +++L  N   
Sbjct: 188 AKFLASIPASVTSLDL----SAN-----LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 772 ----RKIPEVVGKLNSLKSLNISHNNLT-----GC--IPSSLRNLTELESLDLSSNKL-- 818
                 +  +   L  L+++ + ++ +       C  + ++  N+ ++  +D +  ++  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 819 --AGRIPTQLASLNY-LSVLNLSNN 840
             +  I   +  L+    V +L N 
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQ 323

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 22/184 (11%)

Query: 355 AKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLS 414
             L N    +L   S+   T L +      +   +    NI      ++    L+ L LS
Sbjct: 16  PGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLS 71

Query: 415 ENQIGGRIPSWMWDI----GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLP 470
            NQI         D+     +  L EL ++RN L +++ +P   L  L LD+N L+    
Sbjct: 72  HNQIS--------DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR-DTD 122

Query: 471 DLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
            L    ++   SI NN L   I      LS ++ LDL  N ++           +  +DL
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDL 179

Query: 529 RMNN 532
               
Sbjct: 180 TGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
            ++  +    N    +L   ++++   + +    ++  +   + I       +  +   T
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-----QSLAGMQFFT 63

Query: 434 -LIELDLSRNFLTSIDHL-PWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIP 491
            L EL LS N ++ +  L     LE L ++ N L+         +    + NN L     
Sbjct: 64  NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD--T 121

Query: 492 SSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551
            S  +L +++ L + NN L   I      S LE LDL  N    +   T  K  K+ ++ 
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTRLK--KVNWID 178

Query: 552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
           L+G                   +   +   
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 18/226 (7%)

Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
            +      +L   S +  +  S   L  +++ +   N+ +  +        T L  L LS
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNG-DNSNIQSLAG--MQFFTNLKELHLS 71

Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
            N  S    S   +L +L  L ++ N  +  +    G     L+ L L +N        S
Sbjct: 72  HNQISD--LSPLKDLTKLEELSVNRNR-LKNLN---GIPSACLSRLFLDNNELRD--TDS 123

Query: 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340
             +L+ L  L++  N  +  I      L++L  L L  NE I +    +  L  +  I L
Sbjct: 124 LIHLKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDL 179

Query: 341 SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLS 386
           +      +  +    +L     +   +        ++   S+ +  
Sbjct: 180 T-GQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
             L      +L     V  + +     ++ +   +  +++    + +       L  L L
Sbjct: 16  PGLANAVKQNL-GKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
             N  + ++      ++T+L  L ++ N          + L +   L L+ N    ++ D
Sbjct: 71  SHNQ-ISDLSPL--KDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNN----ELRD 120

Query: 304 M--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLK 361
                +L  L  L +  N+ + SI   +  L  L  + L  +  +         +LK + 
Sbjct: 121 TDSLIHLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVN 175

Query: 362 VLSLSN-----ISLSVSTKLTANSSFPNLSALDLSACNISE 397
            + L+        +    +L   ++  +     +S   IS 
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 57/237 (24%)

Query: 434 LIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
            ++ +L +  +T +        ++  + D++++Q             S++          
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-------------SLAG--------- 58

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
                ++++ L LS+N +S  +      + LE L +  N  + ++         L+ L L
Sbjct: 59  -MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLK-NLN--GIPSACLSRLFL 113

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF 612
             N L      SL +   L+ L + NN L           ++ +L          L +  
Sbjct: 114 DNNELRDT--DSLIHLKNLEILSIRNNKLK----------SIVMLG--------FLSK-- 151

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
                L  L+L+GN +       L   + +  +D+   +  +    +   L     +
Sbjct: 152 -----LEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 37/195 (18%)

Query: 649 NNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708
              I+  FP     L       L        + D  ++     ++  +  ++ +  +  +
Sbjct: 6   PTPINQVFP--DPGLANAVKQNLGKQS----VTDLVSQKELSGVQNFNGDNSNIQSLAGM 59

Query: 709 WYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSN 768
            +  + K +   +N                        +  DL   + LT    + ++ N
Sbjct: 60  QFFTNLKELHLSHN------------------------QISDLSPLKDLTKLEELSVNRN 95

Query: 769 RFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 828
           R  + +  +      L  L + +N L      SL +L  LE L + +NKL  +    L  
Sbjct: 96  RL-KNLNGI--PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGF 148

Query: 829 LNYLSVLNLSNNQLE 843
           L+ L VL+L  N++ 
Sbjct: 149 LSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 35/213 (16%)

Query: 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIM 695
                     ++G   + D        L  +Q     ++     I        F  L+ +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68

Query: 696 DCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMER 755
             SHNQ++ + PL  L   + +    N         L G  +        +  + L    
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKN-----LNGIPS------ACLSRLFLDNNE 117

Query: 756 I--------LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTE 807
           +        L     + + +N+  + I  ++G L+ L+ L++  N +T      L  L +
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKL-KSI-VMLGFLSKLEVLDLHGNEITN--TGGLTRLKK 173

Query: 808 LESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 840
           +  +DL+  K           + Y   L ++N 
Sbjct: 174 VNWIDLTGQKC------VNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 38/262 (14%), Positives = 80/262 (30%), Gaps = 53/262 (20%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS-GFTDQFPSLTLLDLCSCN 149
            +   S    NI S + + F   L++L+L+ N     +IS          L  L +    
Sbjct: 46  FNGDNS----NIQSLAGMQFFTNLKELHLSHN-----QISDLSPLKDLTKLEELSVNRNR 96

Query: 150 FTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
              ++       ++    L L  N  +     S  +L  L  L +++            N
Sbjct: 97  LK-NLNGIPSACLS---RLFLDNNE-LRDT-DSLIHLKNLEILSIRN------------N 138

Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
            +  +                    L +L  LDL  N  +          + ++ ++DL+
Sbjct: 139 KLKSI---------------VMLGFLSKLEVLDLHGNE-ITNTGGL--TRLKKVNWIDLT 180

Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI--PDMFTNLTQLSFLGLAYNELIGSIPS 327
                    +     Q  L++     +  G+   P   +N        + +  L      
Sbjct: 181 GQ----KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWE-LPVYTDE 235

Query: 328 SIFELLNLTEIYLSFSNFSGSV 349
             ++      +  + + F G+V
Sbjct: 236 VSYKFSEYINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 32/252 (12%), Positives = 79/252 (31%), Gaps = 39/252 (15%)

Query: 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ 651
           +     ++   + +  + Q       + + N + + ++      +     L+ L + +NQ
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSG--VQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQ 74

Query: 652 IDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711
           I D  P  L  L +L+ L +  NR    + +    +P   L  +   +N+L     L +L
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRNR----LKNLNG-IPSACLSRLFLDNNELRDTDSLIHL 127

Query: 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQ 771
           ++ + +   NN                     L      + M   L+    +DL  N   
Sbjct: 128 KNLEILSIRNNK--------------------LK----SIVMLGFLSKLEVLDLHGNEIT 163

Query: 772 RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 831
                 + +L  +  ++++              L    ++     +     P  +++   
Sbjct: 164 NTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGS 219

Query: 832 LSVLNLSNNQLE 843
                +      
Sbjct: 220 YVDGCVLWELPV 231

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           IP +L   IT++    L  N+     P +FS  ++L  +DL +N  + E+       +  
Sbjct: 26  IPTNLPETITEI---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRS 81

Query: 263 LAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
           L  L L  N  +  +P S F  L  L  L L  N       D F +L  L+ L L  N+L
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 322 IGSIPSSIFE-LLNLTEIYL 340
             +I    F  L  +  ++L
Sbjct: 141 -QTIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 17/161 (10%)

Query: 146 CSCNFTG---------SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
           C+C+             IP +L   IT++    L  N+     P +FS   +LR +DL S
Sbjct: 9   CTCSNNIVDCRGKGLTEIPTNLPETITEI---RLEQNTIKVIPPGAFSPYKKLRRIDL-S 64

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQQLCYLDLDDNHFVGEIPAS 255
           NN + ++       +  L  L L  N  +  +P S F  L  L  L L+ N  +  +   
Sbjct: 65  NNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK-INCLRVD 122

Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
              ++  L  L L  N        +FS L+ +  ++L   N
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           N+P          + ++ L  N      I  G    +  L  +DL S N    + P    
Sbjct: 29  NLPET--------ITEIRLEQNTI--KVIPPGAFSPYKKLRRIDL-SNNQISELAPDAFQ 77

Query: 161 NITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
            +  L  L L  N  I  +P S F  L  L+ L L +N  +  +      ++  L  L L
Sbjct: 78  GLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL 135

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
             N        +FS L+ +  + L  N F
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 13/152 (8%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           EIP +L   IT++    L  N      P +FS  ++L  ++L  N      PD F  L  
Sbjct: 25  EIPTNLPETITEI---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
           L+ L L  N++   +P S+FE L +L  + L+ +N    + +  F  L NL +LSL +  
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 370 LSVSTKLTANSSFPNLSALDLS------ACNI 395
           L  +      S    +  + L+       C++
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 383 PNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
             ++ + L    I   P        +L  +DLS NQI   +    +  G+ +L  L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ-GLRSLNSLVLYG 89

Query: 442 NFLTSI-----DHLPWKNLEYLHLDSNSLQGSLP----DLPPHMVSFSISNNSLTGEIPS 492
           N +T +     + L   +L+ L L++N +   L         ++   S+ +N L      
Sbjct: 90  NKITELPKSLFEGLF--SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 493 SFCNLSSIQYLDLSNN 508
           +F  L +IQ + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
                 IDLS+N+     P+    L SL SL +  N +T    S    L  L+ L L++N
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114

Query: 817 KLAGRIPTQL-ASLNYLSVLNLSNNQL 842
           K+   +       L+ L++L+L +N+L
Sbjct: 115 KIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 470 PDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP----QCLGNSTLET 525
            +LP  +    +  N++    P +F     ++ +DLSNN +S ++     Q L +  L +
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS--LNS 84

Query: 526 LDLRMNNFQGSIPQTNAKG-CKLTYLRLSGNHLEGPLPP-SLTNCVKLQFLDVGNNNLS 582
           L L  N     +P++  +G   L  L L+ N +   L   +  +   L  L + +N L 
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            I L  N  +   P        L+ +++S+N ++   P + + L  L SL L  NK+   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 822 IPTQLASLNYLSVLNLSNNQLE 843
             +    L  L +L L+ N++ 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS-SLRNLTELESLDLSS 815
           L +  ++ L  N+       +   L SL+ L ++ N +  C+   + ++L  L  L L  
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 816 NKLAGRIPTQLASLNYLSVLNLSNN 840
           NKL        + L  +  ++L+ N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 521 STLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLEGPLPP----SLTNCVKLQFLD 575
            T+  + L  N  +  IP        KL  + LS N +   L P     L +   L  L 
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS---LNSLV 86

Query: 576 VGNNNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
           +  N ++            LQ+L +  N  +      F     L  L+L  N+L+     
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 635 SLVNCQYLEVLDVGNNQID 653
           +    + ++ + +  N   
Sbjct: 147 TFSPLRAIQTMHLAQNPFI 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 47/213 (22%)

Query: 146 CSCNFTG-----------SIPPSLGNNI-TQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
           C+CN              S+P      I      LDL          ++F  L +L  L+
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPS----GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLN 65

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
           L  N     + A + +++T+L  L L++N  +      F +L QL  L L  N     +P
Sbjct: 66  LDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLP 123

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLS 312
           + + + +T+L  L L++N              QL             IP   F  LT L 
Sbjct: 124 SGVFDRLTKLKELRLNTN--------------QL-----------QSIPAGAFDKLTNLQ 158

Query: 313 FLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSN 344
            L L+ N+L  S+P   F+ L  L  I L F N
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 14/142 (9%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
           LDL S G +    ++F  L +L WLNL+YN        +F +LT+L  LGLA N+L  S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 326 PSSIF-ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN-----ISLSVSTKLTAN 379
           P  +F  L  L ++YL   N   S+    F +L  LK L L+      I      KLT  
Sbjct: 99  PLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-- 155

Query: 380 SSFPNLSALDLSACNISEFPDN 401
               NL  L LS   +   P  
Sbjct: 156 ----NLQTLSLSTNQLQSVPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 97  WLHGN-IPSNSSLFF--LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS 153
            L    + + S   F  L +L  LNL +N      +S+G  D    L  L L +     S
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 154 IPPSLGNNITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNIT 212
           +P  + +++TQL  L L  N  +  +PS  F  L +L+ L L +N     IPA   + +T
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLT 155

Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
            L  L LS+N        +F  L +L  + L  N F
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 55/224 (24%), Positives = 81/224 (36%), Gaps = 79/224 (35%)

Query: 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349
           L+L+           F  LT+L++L L YN+L  ++ + +                    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGV-------------------- 78

Query: 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE 409
               F  L  L  L L+N  L+         S P                D+L    QL+
Sbjct: 79  ----FDDLTELGTLGLANNQLA---------SLPLG------------VFDHLT---QLD 110

Query: 410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI-----DHLPWKNLEYLHLDSNS 464
            L L  NQ+   +PS ++D  +  L EL L+ N L SI     D L   NL+ L L +N 
Sbjct: 111 KLYLGGNQLK-SLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDKLT--NLQTLSLSTNQ 166

Query: 465 LQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508
           LQ S+P                      +F  L  +Q + L  N
Sbjct: 167 LQ-SVPH--------------------GAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 436 ELDLSRNFLTSIDHLPW---KNLEYLHLDSNSLQGSLP----DLPPHMVSFSISNNSLTG 488
           +LDL    L ++    +     L +L+LD N LQ +L     D    + +  ++NN L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQ----CLGNSTLETLDLRMNNFQGSIPQTNA-- 542
                F +L+ +  L L  N L   +P      L    L+ L L  N  Q SIP   A  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK--LKELRLNTNQLQ-SIP-AGAFD 152

Query: 543 KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579
           K   L  L LS N L+     +     KLQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           LT   T+ L++N+       V   L  L  L +  N L          LT+L+ L L++N
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 817 KLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIPGG 849
           +L   IP      L  L  L+LS NQL+  +P G
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNN---SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ 539
           +  L     ++F  L+ + +L+L  N   +LS  +   L    L TL L  N    S+P 
Sbjct: 44  STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE--LGTLGLANNQLA-SLPL 100

Query: 540 -TNAKGCKLTYLRLSGNHLEGPLPP----SLTNCVKLQFLDVGNNNLSGQIPE----CLG 590
                  +L  L L GN L+  LP      LT    L+ L +  N L   IP      L 
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 591 NSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626
           N  LQ L +  N         F +   L ++ L GN
Sbjct: 156 N--LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPP----SLTNCVKLQFLDVGNN 579
           E LDL+          T     KLT+L L  N L+  L       LT    L  L + NN
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE---LGTLGLANN 93

Query: 580 NLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPP-- 634
            L+  +P  +    + L  L +  N    SLP   F +   L  L LN N+L+  +P   
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGA 150

Query: 635 --SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
              L N   L+ L +  NQ+        D L +LQ + L  N
Sbjct: 151 FDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
           L L++N F       +   + QL  ++ S+N  +     +F     +  + L  N     
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKN 359
              MF  L  L  L L  N +   + +  F  L ++  + L   N   +V    F  L +
Sbjct: 97  QHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLY-DNQITTVAPGAFDTLHS 154

Query: 360 LKVLSLSN 367
           L  L+L  
Sbjct: 155 LSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 1/128 (0%)

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
           L L +N F       +   + QL  ++ S+N  +     +F     +  + L  N     
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           +   +   +  L  L L SN  +     SF  L  +  L+L  N      P  F  L  L
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 312 SFLGLAYN 319
           S L L  N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
           +IP            +L L  N+F   + +  F  + P L  ++  S N    I      
Sbjct: 29  HIPQY--------TAELRLNNNEFTVLEATGIF-KKLPQLRKINF-SNNKITDIEEGAFE 78

Query: 161 NITQLAYLDLSINSFIGHIPSS-FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
             + +  + L+ N  + ++    F  L  L+ L L+SN     +       ++ +  L L
Sbjct: 79  GASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
             N  +   P +F  L  L  L+L  N F
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 37/159 (23%)

Query: 359 NLKVLSLSNISLSVSTKLTANSSF---PNLSALDLSACNISEFPDN-LRTQHQLELLDLS 414
               L L+N      T L A   F   P L  ++ S   I++  +        +  + L+
Sbjct: 33  YTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 415 ENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI-----DHLPWKNLEYLHLDSNSLQGSL 469
            N++   +   M+  G+ +L  L L  N +T +       L   ++  L L  N +  ++
Sbjct: 90  SNRL-ENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLS--SVRLLSLYDNQIT-TV 144

Query: 470 PDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508
                                P +F  L S+  L+L  N
Sbjct: 145 A--------------------PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L     I+ S+N+            + +  + ++ N L        + L  L++L L SN
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115

Query: 817 KLAGRIPTQL-ASLNYLSVLNLSNNQL 842
           ++   +       L+ + +L+L +NQ+
Sbjct: 116 RIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 762 TIDLSSNRFQRKIPEVV-GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
            + L++N F       +  KL  L+ +N S+N +T     +    + +  + L+SN+L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 821 RIPTQLASLNYLSVLNLSNNQLE 843
                   L  L  L L +N++ 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 16/158 (10%)

Query: 504 DLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKG-CKLTYLRLSGNHLEGPLP 562
           D SN  L+ +IP+ +   T   L L  N F         K   +L  +  S N +   + 
Sbjct: 17  DCSNQKLN-KIPEHIPQYT-AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IE 73

Query: 563 P----SLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQ-TFAKS 615
                  +    +  + + +N L   +   +  G  +L+ L +R N  +  +   +F   
Sbjct: 74  EGAFEGASG---VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
             +  L+L  N++    P +      L  L++  N  +
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 34/153 (22%)

Query: 436 ELDLSRNFLTSI------DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE 489
           EL L+ N  T +        LP   L  ++  +N +   +                    
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKIT-DIE------------------- 73

Query: 490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCL--GNSTLETLDLRMNNFQGSIPQ-TNAKGCK 546
              +F   S +  + L++N L   +   +  G  +L+TL LR N     +   +      
Sbjct: 74  -EGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSS 130

Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579
           +  L L  N +    P +      L  L++  N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 56/319 (17%), Positives = 103/319 (32%), Gaps = 29/319 (9%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
                ++  +  ++       +  S +  L  +  ++   V        N  + +   DL
Sbjct: 245 LCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDL 304

Query: 220 SSNSFSGHIPSSFSN---LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
            + S +  +P               +        E          QL   +LS    S  
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE-KSTV 363

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
           + S   + ++L  L  E    +  I  +   L  L +      E +         L  + 
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE----KETL----QYFSTLKAVD 415

Query: 337 EIYLSFSNFSGSVELYDFAKLK----NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSA 392
            +  ++ +   S  L + + LK    +++VL L++  L   T L        ++ LDLS 
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSH 472

Query: 393 CNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGV-HTLIELDLSRNFLTSIDHLP 451
             +   P  L     LE+L  S+N +   +      +     L EL L  N L     + 
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNAL-ENVD----GVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 452 W----KNLEYLHLDSNSLQ 466
                  L  L+L  NSL 
Sbjct: 528 PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 6e-12
 Identities = 61/394 (15%), Positives = 111/394 (28%), Gaps = 62/394 (15%)

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE 337
           P+  S      WL               +       +  +    +GS   ++  +++   
Sbjct: 223 PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAP 282

Query: 338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE 397
           + + +    G                    +       +   S   +     L       
Sbjct: 283 LSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSD--SQKECVLLKDRPEC 340

Query: 398 FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEY 457
           +  +  T  QL   +LS  +    + S +        +E +     LT I  +  + L+ 
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM--RALDP 397

Query: 458 LHLDSNSLQGSLPDL----PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           L  +  +LQ     L    P          +    E        + ++ L L++  L+  
Sbjct: 398 LLYEKETLQ-YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-- 454

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573
               L +  LE L                    +T+L LS N L   LPP+L     L+ 
Sbjct: 455 ---VLCH--LEQL------------------LLVTHLDLSHNRLRA-LPPALAALRCLEV 490

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG-PL 632
           L   +N L   +        LQ L                         L  NRL+    
Sbjct: 491 LQASDNALE-NVDGVANLPRLQELL------------------------LCNNRLQQSAA 525

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLEL 666
              LV+C  L +L++  N +         +   L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 54/366 (14%), Positives = 98/366 (26%), Gaps = 62/366 (16%)

Query: 199 FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
            +G+           ++  +   +       +  S +  L  +  +    V        N
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLW-----LNLEYNNFVGKIPDMFTNLTQLSF 313
             + +   DL +   +  +P     +            L  +       D      QL  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFR 353

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373
             L+  +    + S +     L E+            L     ++ L  L     +L   
Sbjct: 354 CELSVEKST-VLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYF 408

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
           + L A          DL +  + E          + +L L+   +               
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--------------- 453

Query: 434 LIELDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
                      T + HL     + +L L                     S+N L   +P 
Sbjct: 454 -----------TVLCHLEQLLLVTHLDL---------------------SHNRLR-ALPP 480

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLR 551
           +   L  ++ L  S+N+L   +        L+ L L  N  Q S        C  L  L 
Sbjct: 481 ALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 552 LSGNHL 557
           L GN L
Sbjct: 540 LQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 56/327 (17%), Positives = 92/327 (28%), Gaps = 48/327 (14%)

Query: 525 TLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQ 584
           ++        GS   T         L +     +G   PS      L    + +      
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 585 IPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV 644
                  S  Q   + + +      +  A    L    L+  +    L   L +C+ L+ 
Sbjct: 318 FRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQE 376

Query: 645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTG 704
           L+  N     T    +  L  L         F                       + L  
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYF-----------------------STLKA 413

Query: 705 VLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERI-------- 756
           V P+               +  +               +  ++ + L  + +        
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKME------------YADVRVLHLAHKDLTVLCHLEQ 461

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L     +DLS NR  R +P  +  L  L+ L  S N L       + NL  L+ L L +N
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

Query: 817 KLAG-RIPTQLASLNYLSVLNLSNNQL 842
           +L        L S   L +LNL  N L
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 8e-10
 Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 20/319 (6%)

Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
           +      AC    F   L    ++  L L  ++    +     D                
Sbjct: 248 VHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAA 307

Query: 445 TSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
           +  D LP      +   S+S +  +            S                 +   +
Sbjct: 308 SLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT------------DEQLFRCE 355

Query: 505 LSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPS 564
           LS    +    +      L+ L+        +I         L Y + +  +       +
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--A 413

Query: 565 LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLN 624
           +         D+ +  L       +  + ++VL +   + +  L     +  ++  L+L+
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLS 471

Query: 625 GNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTK 684
            NRL+  LPP+L   + LEVL   +N +++     +  L  LQ L+L +NR        +
Sbjct: 472 HNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL-QQSAAIQ 527

Query: 685 TRVPFPKLRIMDCSHNQLT 703
             V  P+L +++   N L 
Sbjct: 528 PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 2e-09
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            + L+           + +L  +  L++SHN L   +P +L  L  LE L  S N L   
Sbjct: 445 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N 500

Query: 822 IPTQLASLNYLSVLNLSNNQLE 843
           +   +A+L  L  L L NN+L+
Sbjct: 501 VDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 10/273 (3%)

Query: 573 FLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
            L     +                +        GS   T         L++      G  
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKL 692
            PS V    L    + +     TF          +  +L  +R      D+ T     +L
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT---DEQL 351

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT--MKGID 750
              + S  + T +     LES K +      +       +         ++    ++   
Sbjct: 352 FRCELSVEKSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
                     A +D   ++F  +   +  +   ++ L+++H +LT  +   L  L  +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTH 467

Query: 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
           LDLS N+L   +P  LA+L  L VL  S+N LE
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           IP +      Q   L L  N  +   P  F +L  L  L L  N     +P  + +++TQ
Sbjct: 38  IPTN-----AQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322
           L  LDL +N  +    + F  L  L  L +  N    ++P     LT L+ L L  N+L 
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL- 147

Query: 323 GSIPSSIFE-LLNLTEIYLSFSN 344
            SIP   F+ L +LT  YL F N
Sbjct: 148 KSIPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 22/163 (13%)

Query: 146 CSCNFT---------GSIPPSLGNNI-TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
           CSC+ T          S+P      I T    L L  N      P  F +L  L+ L L 
Sbjct: 17  CSCSGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
           SN     +P  + +++TQL  LDL +N  +    + F  L  L  L +  N    E+P  
Sbjct: 73  SNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG 130

Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWLNLEYNN 296
           +   +T L +L L  N        +F  L  L   +L   + N
Sbjct: 131 I-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL---FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 15/138 (10%)

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           IP +      Q   L L  N  +   P  F +L  L  L L  N        +F +LTQL
Sbjct: 38  IPTN-----AQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 312 SFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISL 370
           + L L  N+L   +PS++F+ L++L E+++   N    +      +L +L  L+L    L
Sbjct: 91  TVLDLGTNQL-TVLPSAVFDRLVHLKELFMC-CNKLTELP-RGIERLTHLTHLALDQNQL 147

Query: 371 SVSTKLTANSSFPNLSAL 388
               K   + +F  LS+L
Sbjct: 148 ----KSIPHGAFDRLSSL 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 388 LDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS 446
           L L    I++    +  +   L+ L L  NQ+G  +P  ++D     L  LDL  N LT 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT-QLTVLDLGTNQLTV 102

Query: 447 I-----DHLPWKNLEYLHLDSNSLQGSLP---DLPPHMVSFSISNNSLTGEIPSSFCNLS 498
           +     D L   +L+ L +  N L   LP   +   H+   ++  N L      +F  LS
Sbjct: 103 LPSAVFDRLV--HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 499 SIQYLDLSNN 508
           S+ +  L  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
           I T    + L  N+  +  P V   L +LK L +  N L         +LT+L  LDL +
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 816 NKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849
           N+L          L +L  L +  N+L   +P G
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           L     + L SN+       V   L  L  L++  N LT    +    L  L+ L +  N
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122

Query: 817 KLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849
           KL   +P  +  L +L+ L L  NQL+  IP G
Sbjct: 123 KLT-ELPRGIERLTHLTHLALDQNQLKS-IPHG 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 18/108 (16%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNN---SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ 539
           +N +T   P  F +L +++ L L +N   +L   +   L    L  LDL  N     +P 
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ--LTVLDLGTNQLT-VLPS 105

Query: 540 ------TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
                        L  L +  N L   LP  +     L  L +  N L
Sbjct: 106 AVFDRLV-----HLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 521 STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPP----SLTNCVKLQFLDV 576
           +  + L L  N      P        L  L L  N L   LP     SLT    L  LD+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQ---LTVLDL 95

Query: 577 GNNNLSGQIPE----CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
           G N L+  +P      L +  L+ L M  N  +  LP+   +   L  L L+ N+LK
Sbjct: 96  GTNQLT-VLPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 73/554 (13%), Positives = 161/554 (29%), Gaps = 83/554 (14%)

Query: 112 PRLRKLNLA----FNDFNGSKISSG---------FTDQFPSLTLLDLCSCNFTGSIPPSL 158
           P++R + L     F DFN      G          +  +  L  + L     T      +
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 159 GNNITQLAYLDLSINSFIG--HIPSSFSNLHQLRHLDLQSNNFV---GKIPASLGNNITQ 213
             +      L LS         + +  +    L+ LDL+ ++     G   +   +  T 
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273
           L  L++S                     ++  +         L      L  L L+    
Sbjct: 186 LVSLNISC-----------------LASEVSFSAL-----ERLVTRCPNLKSLKLNRAVP 223

Query: 274 SGHIPSSFSNLQQLLWLNLEY------NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPS 327
              + +      QL  L           +    +    +   +L  L   ++ +   +P+
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 328 SIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSA 387
                  LT + LS++       +    +   L+ L + +  +  +      S+  +L  
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRE 342

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT-- 445
           L +         +    +  + L +     +    P          L  +      +T  
Sbjct: 343 LRVFPS------EPFVMEPNVALTEQGLVSVSMGCPK---------LESVLYFCRQMTNA 387

Query: 446 SIDHLP--WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYL 503
           ++  +     N+    L     +              ++   L     +   +   ++ L
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDY----------LTLEPLDIGFGAIVEHCKDLRRL 437

Query: 504 DLSNNSLSGQIPQCLGN--STLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSG-NHLEG 559
            LS   L+ ++ + +G     +E L +               GC  L  L +      + 
Sbjct: 438 SLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

Query: 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQVLDMRMNNFSGSLPQTFAKSCV 617
            L  + +    ++ L + + ++S    + LG     L V  +       S P++     V
Sbjct: 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERV 556

Query: 618 LVSLNLNGNRLKGP 631
            +   + G R   P
Sbjct: 557 FIYRTVAGPRFDMP 570

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 73/521 (14%), Positives = 160/521 (30%), Gaps = 71/521 (13%)

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL 413
           + +++      +   +    +  T    FP + +++L                     +L
Sbjct: 37  WYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP------------HFADFNL 84

Query: 414 SENQIGGRIPSWMWDI--GVHTLIELDLSRNFLT--SIDHLP--WKNLEYLHLDSNSLQG 467
             +  GG +  W+  +      L E+ L R  +T   ++ +   +KN + L L S     
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE--- 141

Query: 468 SLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-----GNST 522
                         S + L     +      +++ LDL  + +       L       ++
Sbjct: 142 ------------GFSTDGLA----AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 523 LETLDLRM--NNFQGSIPQTNAKGCK-LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVG-- 577
           L +L++    +    S  +     C  L  L+L+       L   L    +L+ L  G  
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 578 -----NNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP- 631
                 +  SG      G   L+ L    +     LP  ++    L +LNL+   ++   
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTK------- 684
           L   L  C  L+ L V +   D           +L+ L +  +  +    +         
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 685 -TRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIF 743
              +  PKL  +     Q+T         +   +     N        +   +  Y ++ 
Sbjct: 366 SVSMGCPKLESVLYFCRQMTN-------AALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418

Query: 744 LTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTG-CIPSSL 802
               G    +         + LS     +    +      ++ L+++    +   +   L
Sbjct: 419 PLDIGF-GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 803 RNLTELESLDLSSNKLAGR-IPTQLASLNYLSVLNLSNNQL 842
                L  L++       + +    + L  +  L +S+  +
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 48/334 (14%), Positives = 101/334 (30%), Gaps = 33/334 (9%)

Query: 93  LSCSWLHGNIPSNSSLFFL----PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC 148
           L+ S L   + S S+L  L    P L+ L L  N     +  +    + P L  L     
Sbjct: 189 LNISCLASEV-SFSALERLVTRCPNLKSLKL--NRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 149 NF-----TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKI 203
                    S      +   +L  L    ++   ++P+ +S   +L  L+L         
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP---------A 254
              L     +L  L +        +    S  + L  L +  +      P          
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 255 SLGNNITQLAYLDLSSNGFSG----HIPSSFSNLQQL---LWLNLEYNNFVGKIPD---- 303
           S+     +L  +       +      I  +  N+ +    +      +    +  D    
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425

Query: 304 -MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKV 362
            +  +   L  L L+                 +  + ++F+  S     +  +   +L+ 
Sbjct: 426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 363 LSLSNISLSVSTKLTANSSFPNLSALDLSACNIS 396
           L + +        L   S    + +L +S+C++S
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 47/131 (35%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 216 YLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG 275
           YLDL +NS        F  L  L  L L  N     +P  + N +T L YL+LS+N    
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 276 HIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIPSSIFE-LL 333
                F  L QL  L L  N     +PD +F  LTQL  L L  N+L  S+P  +F+ L 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLT 148

Query: 334 NLTEIYLSFSN 344
           +L  I+L   N
Sbjct: 149 SLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
           YLDL +N         F  L  L  L L  N        +F  LT L++L L+ N+L  S
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QS 90

Query: 325 IPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           +P+ +F+ L  L E+ L+ +N   S+    F KL  LK L L  
Sbjct: 91  LPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLYQ 133

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 48/162 (29%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 146 CSCNFT---------GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
           CSC+ T          S+P        Q  YLDL  NS        F  L  L  L L  
Sbjct: 5   CSCSGTTVECYSQGRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
           N     +P  + N +T L YL+LS+N         F  L QL  L L+ N     +P  +
Sbjct: 62  NKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGV 119

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWLNLEYNN 296
            + +TQL  L L  N         F  L  L  +WL   ++N
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL---HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
           P+ T       N   S+P  + + +T L  L L  N         F+ L  L +L+L +N
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
                +P  + + +TQL  L L++N         F  L QL  L L  N  +  +P  + 
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVF 144

Query: 258 NNITQLAYLDLSSN 271
           + +T L Y+ L  N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query: 388 LDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS 446
           LDL   ++   P+        L  L L  N++   +P+ +++    +L  L+LS N L S
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT-SLTYLNLSTNQLQS 90

Query: 447 I-----DHLPWKNLEYLHLDSNSLQGSLP----DLPPHMVSFSISNNSLTGEIPSSFCNL 497
           +     D L    L+ L L++N LQ SLP    D    +    +  N L       F  L
Sbjct: 91  LPNGVFDKL--TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 498 SSIQYLDLSNN 508
           +S+QY+ L +N
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
           I      +DL +N  +     V  +L SL  L +  N L          LT L  L+LS+
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 816 NKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849
           N+L          L  L  L L+ NQL+  +P G
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDG 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           LT+   + L  N+ Q     V  KL SL  LN+S N L          LT+L+ L L++N
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110

Query: 817 KLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIPGG 849
           +L   +P  +   L  L  L L  NQL+  +P G
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDG 142

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 6e-11
 Identities = 66/455 (14%), Positives = 132/455 (29%), Gaps = 80/455 (17%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
           L +L+ ++      +   +      +   L  L L  C           +  T       
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC-----------SGFT-----TD 154

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFV---GKIPASLGNNITQLAYLDLSSNSFSG- 226
            + S +       ++  +++ L ++ ++F    GK    L  + T L  L+     F+  
Sbjct: 155 GLLSIV-------THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207

Query: 227 ---HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSN 283
               + +   N + L  + + D   +  +          L      S      +P  + N
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMN 265

Query: 284 LQQLLWLNLEYNNFVGK--IPDMFTNLTQLSFLGLAYNELIG-SIPSSIFELLNLTEIYL 340
           L     L     +++G   +P +F    Q+  L L Y  L      + I +  NL    L
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV--L 323

Query: 341 SFSNFSGSVELYDFAKL-KNLKVLSLSNISLSVSTKLTAN-----------SSFPNLSAL 388
              N  G   L   A+  K LK L +   +     +                    L  +
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

Query: 389 DLSACNIS-----EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF 443
            +   +I+          L+      L+ L   +   RI     D GV +L+        
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREE---RITDLPLDNGVRSLLI------- 433

Query: 444 LTSIDHLPWKNLEYLHLDSNSLQ------GSLPDLPPHMVSFSISNNSLTGE-IPSSFCN 496
                    K L                   +    P++    +     + E +      
Sbjct: 434 -------GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486

Query: 497 LSSIQYLDLSNNSLSGQIPQCLGNS--TLETLDLR 529
             ++Q L++     S +          +L  L ++
Sbjct: 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 72/520 (13%), Positives = 162/520 (31%), Gaps = 85/520 (16%)

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
           + ++++    +   +L+    FPNL +L L                +  + +L     GG
Sbjct: 53  EHVTMALCYTATPDRLSRR--FPNLRSLKLKGKP------------RAAMFNLIPENWGG 98

Query: 421 RIPSWMWDIGVH--TLIELDLSRNFLT-----SIDHLPWKNLEYLHLDSNSLQGSLPDLP 473
            +  W+ +I  +   L  +   R  ++      +      +LE L LD  S         
Sbjct: 99  YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--------- 149

Query: 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-----GNSTLETLDL 528
                   + + L   +     +   I+ L +  +S S +  + L      N++LE L+ 
Sbjct: 150 ------GFTTDGLLSIVT----HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 529 RMNNFQG---SIPQTNAKGCK-LTYLRLSGNHL--EGPLPPSLTNCVKLQFLDVGNN-NL 581
            M  F        +T A+ C+ L  +++    +        +  N  +     +  +  +
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259

Query: 582 SGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP-LPPSLVNCQ 640
             +    +    L  L +     +  +P  F  +  +  L+L    L+       +  C 
Sbjct: 260 PEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

Query: 641 YLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVP----------FP 690
            LEVL+  N   D           +L+ L +        + D +  V             
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGID 750
           +L  M    + +T        ES +++     N  +   + L           +T   +D
Sbjct: 379 ELEYMAVYVSDITN-------ESLESIGTYLKNLCDFRLVLLDREER------ITDLPLD 425

Query: 751 LQMERIL---TTFATIDLSSNRFQ---RKIPEVVGKLNSLKSLNISHNNLT-GCIPSSLR 803
             +  +L              +       +  +     +++ + + +   +   +    R
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485

Query: 804 NLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNNQL 842
               L+ L++     + R        L  L  L +   + 
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 83/542 (15%), Positives = 158/542 (29%), Gaps = 87/542 (16%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
           S T   +       + P  L      L  L L              N        +    
Sbjct: 49  SETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE-- 106

Query: 199 FVGKIPASLGNNITQLAYLDLSSNSFS--GHIPSSFSNLQQLCYLDLDD-NHFVGEIPAS 255
                   + NN+ QL  +       S       + +    L  L LD  + F  +   S
Sbjct: 107 --------ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158

Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFS----NLQQLLWLNLEYNNFVGKIPDM-----FT 306
           +  +  ++  L +  + FS            +   L  LN     F  KI          
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIAR 217

Query: 307 NLTQLSFLGLAYNELIGSIPSSIFELLNLTEI-YLSFSNFSGSVELY-DFAKLKNLKVLS 364
           N   L  + +   E++  +        NL E    S +   G  E Y +    + L  L 
Sbjct: 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 365 LSNISLSVSTKLTANSSFPNLSALDLSACNIS--EFPDNLRTQHQLELLDLSENQIGGRI 422
           LS +  +    L   +    +  LDL    +   +    ++    LE+L+   N IG   
Sbjct: 277 LSYMGPNEMPILFPFA--AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG--- 330

Query: 423 PSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482
                D G+  L +                K L+ L ++  + +  + D         +S
Sbjct: 331 -----DRGLEVLAQY--------------CKQLKRLRIERGADEQGMEDEEGL-----VS 366

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQT 540
              L     +       ++Y+ +  + ++ +  + +G     L    L            
Sbjct: 367 QRGLI----ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV----------- 411

Query: 541 NAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV--GNNNLSGQIPECLGN--STLQV 596
                +    R++   L+  +   L  C KL+          L+      +G     ++ 
Sbjct: 412 LLDREE----RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 597 LDMRMNNFSGSLPQTFAKSCV-LVSLNLNGNRL--KGPLPPSLVNCQYLEVLDVGNNQID 653
           + +     S      F++ C  L  L + G     +  +  ++     L  L V   +  
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKLPSLRYLWVQGYRAS 526

Query: 654 DT 655
            T
Sbjct: 527 MT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 47/342 (13%), Positives = 86/342 (25%), Gaps = 59/342 (17%)

Query: 92  DLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFT 151
           +     L+ +I        L   RKL      + G             +  LDL      
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 152 GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIP------- 204
                +L      L  L+         +        QL+ L ++       +        
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 205 ----ASLGNNITQLAYLDLSSNSFS----GHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
                +L     +L Y+ +  +  +      I +   NL     + LD    + ++P   
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGL 316
           G                   + S     ++L                    LT L    +
Sbjct: 427 G-------------------VRSLLIGCKKLRRFAFYLRQ---------GGLTDLGLSYI 458

Query: 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
                            N+  + L +   S    +       NL+ L +     S     
Sbjct: 459 GQY------------SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

Query: 377 TANSSFPNLSALDLSACNISEFPDNL----RTQHQLELLDLS 414
            A +  P+L  L +     S    +L    R    +EL+   
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 70/474 (14%), Positives = 136/474 (28%), Gaps = 60/474 (12%)

Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL------------NL 335
           + + L Y     ++   F NL  L   G     +   IP +    +             L
Sbjct: 55  VTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114

Query: 336 TEIYLSFSNFS-GSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF-PNLSALDLSAC 393
             ++      S   ++    A+  +L+ L L   S   +  L +  +    +  L +   
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174

Query: 394 NISEFPDN-----LRTQHQLELLDLSENQIGGRIPSWMWDIGVH--TLIELDLSRNFLTS 446
           + SE          +    LE+L+    +     P  +  I  +  +L+ + +    +  
Sbjct: 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234

Query: 447 IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG-------EIPSSFCNLSS 499
           +                SL   +     +M           G       E+P  F   + 
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 500 IQYLDLSNNSLSGQ--IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK-LTYLRLSGNH 556
           I+ LDL    L  +           LE L+ R       + +  A+ CK L  LR+    
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGA 353

Query: 557 LEGPLPPSLT------------NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
            E  +                  C +L+++ V  ++++ +  E +G     + D R+   
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

Query: 605 SGSLPQTF----------AKSCV-LVSLNLNGNRLK---GPLPPSLVNCQYLEVLDVGNN 650
                 T              C  L        +       L         +  + +G  
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473

Query: 651 QI-DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703
              D+    +      LQ L +R   F             P LR +     + +
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 54/369 (14%), Positives = 107/369 (28%), Gaps = 65/369 (17%)

Query: 330 FELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN---------- 379
           F++ + T  +++ +    +       +  NL+ L L     +    L             
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 380 ----SSFPNLSALDLSACNISEFPDNL---RTQHQLELLDLSE-NQIGGRIPSWMWDIGV 431
               ++   L ++      +S+   +         LE L L + +         +  I  
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT---TDGLLSIVT 161

Query: 432 H--TLIELDLSRNFLTSID-----HLPW--KNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482
           H   +  L +  +  +  D      L     +LE L+                     IS
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-------------IS 208

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542
              L     +   N  S+  + + +  +   +      + LE       N    +P+   
Sbjct: 209 PKDLE----TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 543 KGCKLTYLRLSGNHLEGP--LPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLD 598
                  L   G    GP  +P       +++ LD+    L  +    L      L+VL+
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 599 MRMNNFSGSLPQTFAKSCV-LVSLNLNGNRLKGPLPPSLV------------NCQYLEVL 645
            R       L +  A+ C  L  L +     +  +                  CQ LE +
Sbjct: 325 TRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

Query: 646 DVGNNQIDD 654
            V  + I +
Sbjct: 384 AVYVSDITN 392

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           IP            L L  N F+  +P   SN + L  ++L  N         F+N+TQL
Sbjct: 29  IPRD-----VT--ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 312 SFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
             L L+YN L   IP   F+ L +L  + L  ++ S  V    F  L  L  L++  
Sbjct: 81  LTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA 135

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
           L L  N F   +P  L +N   L  +DLS+N  S     SFSN+ QL  L L  N     
Sbjct: 36  LYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQL--LWLNLEYNN 296
           IP    + +  L  L L  N  S  +P  +F++L  L  L +     N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAI---GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
           I      + L  N+F   +P+ +     L  +++S+N ++     S  N+T+L +L LS 
Sbjct: 29  IPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87

Query: 816 NKLAGRIPTQLASLNYLSVLNLSNNQL 842
           N+L    P     L  L +L+L  N +
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 30/126 (23%)

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI 447
           L L     +  P  L     L L+DLS N+I   + +  +      L+ L LS N L  I
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQ-LLTLILSYNRLRCI 93

Query: 448 -----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQY 502
                D L  K+L  L L  N +   +P+                     +F +LS++ +
Sbjct: 94  PPRTFDGL--KSLRLLSLHGNDIS-VVPE--------------------GAFNDLSALSH 130

Query: 503 LDLSNN 508
           L +  N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 15/123 (12%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN 160
            IP +          +L L  N F    +       +  LTL+DL S N   ++     +
Sbjct: 28  GIPRDV--------TELYLDGNQF---TLVPKELSNYKHLTLIDL-SNNRISTLSNQSFS 75

Query: 161 NITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
           N+TQL  L LS N  +  IP  +F  L  LR L L  N+ +  +P    N+++ L++L +
Sbjct: 76  NMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAI 133

Query: 220 SSN 222
            +N
Sbjct: 134 GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 44/133 (33%)

Query: 436 ELDLSRNFLTSI----DHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIP 491
           EL L  N  T +     +   K+L  + L +N +  +L                      
Sbjct: 35  ELYLDGNQFTLVPKELSNY--KHLTLIDLSNNRIS-TLS--------------------N 71

Query: 492 SSFCNLSSIQYLDLSNNSLSGQIPQCL------GNSTLETLDLRMNNFQGSIPQ---TNA 542
            SF N++ +  L LS N L     +C+      G  +L  L L  N+    +P+    + 
Sbjct: 72  QSFSNMTQLLTLILSYNRL-----RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDL 125

Query: 543 KGCKLTYLRLSGN 555
               L++L +  N
Sbjct: 126 S--ALSHLAIGAN 136

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 39/191 (20%)

Query: 497 LSSIQYLDLSNNSLSGQIPQCLG------NSTLETLDLRMNNFQGSIPQTNAKGCK---- 546
           LSS++ L+L+   ++      +          L+ ++L            +  G +    
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-------DPAGLRTLLP 123

Query: 547 ----LTYLRLSGNHLEGP----LPPSLT-NCVKLQFLDVGNNNLSGQ----IPECL-GNS 592
                  L L  N L       L   L  +  ++  L + NN L+      + E L GN+
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 593 TLQVLDMRMNNFS----GSLPQTFAKSCVLVSLNLNGNRLKGP----LPPSLVNCQYLEV 644
           ++  L +            L     ++  L  LN+  N         L  +      LE+
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243

Query: 645 LDVGNNQIDDT 655
           L +  N++   
Sbjct: 244 LHLYFNELSSE 254

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 62/314 (19%)

Query: 402 LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLD 461
                 L  L+L+  ++          +    +  +  S              L+ ++L 
Sbjct: 68  AEVLSSLRQLNLAGVRMT--------PVKCTVVAAVLGSGR----------HALDEVNLA 109

Query: 462 SNSLQG-SLPDLPPHMVSF---SISNNSLTGEIPSSFC-----NLSSIQYLDLSNNSLSG 512
           S  L    L  L P  +      +  NSL  E           +   I  L LSNN L+ 
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169

Query: 513 QIPQCLG-----NSTLETLDLRMNNFQ----GSIPQTNAKGCKLTYLRLSGNHLEGP--- 560
                L      N+++  L L            +     +  +L  L ++ N        
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 561 -LPPSLTNCVKLQFLDVGNNNLS----GQIPECLG----NSTLQVLDMRMNNFSGSLPQT 611
            L  +      L+ L +  N LS      + +  G     + + V        S      
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS------ 283

Query: 612 FAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL----ELQ 667
                V++S               +     L + D+ +++     P+    LL    E++
Sbjct: 284 -EYWSVILSEVQRNLNS--WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR 340

Query: 668 VLILRSNRFWGPIG 681
            L+ +     G   
Sbjct: 341 ALLEQLGSS-GSPS 353

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 42/293 (14%), Positives = 79/293 (26%), Gaps = 81/293 (27%)

Query: 308 LTQLSFLGLAYNELIGSIPSSIFELL-----NLTEIYLSFSNFSGSVELYDFAK-LKNLK 361
           L+ L  L LA   +     + +  +L      L E+ L+         L          +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRAR 129

Query: 362 VLSLSNISLS------VSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQHQLEL 410
            L L   SL       +   L  +     ++ L LS   ++        + L     +  
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQC--QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 411 LDLSENQIGGRIPSWMWDIGVH----------TLIELDLSRNFLTSI----------DHL 450
           L L    +G        D G+            L EL+++ N               +H 
Sbjct: 188 LSLLHTGLG--------DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH- 238

Query: 451 PWKNLEYLHLDSNSLQ----------GSLPDLPPHMVSFSISNNSLTGEIPSSFCNL--- 497
              +LE LHL  N L           G   +    +V       +++         +   
Sbjct: 239 --PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRN 296

Query: 498 ------------SSIQYLDLSNNSLSGQIPQCLG-----NSTLETLDLRMNNF 533
                         +   DL ++  +   P            +  L  ++ + 
Sbjct: 297 LNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 47/254 (18%)

Query: 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
           S  H L  ++L S         +L     +   L L  NS            + L     
Sbjct: 98  SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP------EACKDLR---- 147

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSG----HIPSSFSNLQQLLWLNLEYNNF-- 297
                       L ++  Q+  L LS+N  +      +    +    +  L+L +     
Sbjct: 148 ----------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197

Query: 298 --VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL----NLTEIYLSFSNFS--GSV 349
             +  +        QL  L +AYN    +   ++        +L  ++L F+  S  G  
Sbjct: 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257

Query: 350 ELYDFAK----LKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ 405
            L D          + V      ++S    +  +    NL++ D            ++  
Sbjct: 258 VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDR---------ARVQRH 308

Query: 406 HQLELLDLSENQIG 419
            +L L DL +++  
Sbjct: 309 LELLLRDLEDSRGA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 44/228 (19%)

Query: 111 LPRLRKLNLAFNDFNGS---KISSGFTDQFPSLTLLDLCSCNFTGS----IPPSLGNNIT 163
             R RKL L  N         +          +T L L +   T +    +   L  N T
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-T 183

Query: 164 QLAYLDLSINSFIG-----HIPSSFSNLHQLRHLDLQSNNF----VGKIPASLGNNITQL 214
            + +L L     +G      + +      QL+ L++  N         +  +   + + L
Sbjct: 184 SVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS-L 241

Query: 215 AYLDLSSNSFS----GHIPSSFSNLQQLCYLDLD--DNHFVGEIPASL------------ 256
             L L  N  S      +       +    + +   +   V E  + +            
Sbjct: 242 ELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWD 301

Query: 257 ---GNNITQLAYLDLSSNGFSGHIPSSFSNL----QQLLWLNLEYNNF 297
                   +L   DL  +  +   P   + L     ++  L  +  + 
Sbjct: 302 RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 8e-09
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
           +    L      L  L + +     H+       L +L  L +  +      PD F    
Sbjct: 22  DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLS 341
           +LS L L++N L  S+     + L+L E+ LS
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 10/70 (14%), Positives = 22/70 (31%)

Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
                     L  L +++   +  +       + +L  L +  +      P +F    +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 239 CYLDLDDNHF 248
             L+L  N  
Sbjct: 83  SRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 767 SNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS-SLRNLTELESLDLSSNKLAGRIPTQ 825
           +          +    +L  L I +      +    LR L EL +L +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 826 -LASLNYLSVLNLSNNQL 842
                  LS LNLS N L
Sbjct: 75  AFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
                +    NLTE+Y+        +EL D   L  L+ L++    L            P
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTP 80

Query: 384 NLSALDLSACNISEFPDNLRTQHQLELLDLSEN 416
            LS L+LS   +            L+ L LS N
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 757 LTTFATIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
                 + + + +  + +    +  L  L++L I  + L    P +      L  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 816 NKLAGRIPTQLASLNYLSVLNLSNNQL 842
           N L   +  +      L  L LS N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 439 LSRNFLTSIDHLPW-KNLEYLHLDSNSL-----QGSLPDLPPHMVSFSISNNSLTGEIPS 492
                L S+ HLP  +NL  L++++           L  L   + + +I  + L    P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPD 74

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQ 534
           +F     +  L+LS N+L     + +   +L+ L L  N   
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLT 445
           S L  +     +   +L     L  L +   Q    +       G+  L  L + ++ L 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLR 69

Query: 446 SI-----DHLPWKNLEYLHLDSNSLQGSLPDL--PPHMVSFSISNNSLT 487
            +        P   L  L+L  N+L+           +    +S N L 
Sbjct: 70  FVAPDAFHFTP--RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI-PSSFSNLHQLRHLDLQS 196
            +LT L + +      +       + +L  L +   S +  + P +F    +L  L+L  
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSF 224
           N     +       ++ L  L LS N  
Sbjct: 90  NALE-SLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 22/122 (18%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542
                 +         ++  L + N      +        L  L                
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLE----LRDLRGLG--------------- 56

Query: 543 KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMN 602
              +L  L +  + L    P +     +L  L++  N L     + +   +LQ L +  N
Sbjct: 57  ---ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Query: 603 NF 604
             
Sbjct: 114 PL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQLE 843
            L  + +         L     L  L + + +    +  + L  L  L  L +  + L 
Sbjct: 12  GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 4/107 (3%)

Query: 562 PPSLTNCVKLQFLDVGNNNLSGQIP-ECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLV 619
              L     L  L + N      +    L     L+ L +  +      P  F  +  L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID-DTFPYWLDVLLE 665
            LNL+ N L+  L    V    L+ L +  N +       WL    E
Sbjct: 84  RLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
           IP+S          L+L SN         F  L QL  L+L  N        +F  LT+L
Sbjct: 26  IPSS-----AT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 312 SFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           + L L  N+L  S+P+ +F+ L  L E+ L  +N   SV    F +L +L+ + L  
Sbjct: 79  TILYLHENKL-QSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQKIWLHT 133

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 37/144 (25%)

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           IP+S          L+L SN         F  L QL  L L  N               Q
Sbjct: 26  IPSS-----AT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQN---------------Q 63

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNEL 321
           +  L              F  L +L  L L + N +  +P+ +F  LTQL  L L  N+L
Sbjct: 64  IQSLP----------DGVFDKLTKLTILYL-HENKLQSLPNGVFDKLTQLKELALDTNQL 112

Query: 322 IGSIPSSIFE-LLNLTEIYLSFSN 344
             S+P  IF+ L +L +I+L  +N
Sbjct: 113 -KSVPDGIFDRLTSLQKIWL-HTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 146 CSCNFT---------GSIPPSLGNNI-TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
           CSC+ T          S+P      I +    L+L  N         F  L QL  L L 
Sbjct: 5   CSCSGTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
            N     +P  + + +T+L  L L  N         F  L QL  L LD N  +  +P  
Sbjct: 61  QNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDG 118

Query: 256 LGNNITQLAYLDLSSN 271
           + + +T L  + L +N
Sbjct: 119 IFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 409 ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI-----DHLPWKNLEYLHLDSN 463
             L+L  N++   +P  ++D  +  L +L LS+N + S+     D L    L  L+L  N
Sbjct: 31  TRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKL--TKLTILYLHEN 86

Query: 464 SLQGSLP----DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508
            LQ SLP    D    +   ++  N L       F  L+S+Q + L  N
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-ELLNLTEIYLSFSNFSGS 348
           L LE N        +F  LTQL+ L L+ N++  S+P  +F +L  LT +YL   N   S
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLH-ENKLQS 90

Query: 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSAL 388
           +    F KL  LK L+L    L    K   +  F  L++L
Sbjct: 91  LPNGVFDKLTQLKELALDTNQL----KSVPDGIFDRLTSL 126

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
           I ++   ++L SN+ Q     V  KL  L  L++S N +          LT+L  L L  
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 816 NKLAGRIPTQL-ASLNYLSVLNLSNNQLEGPIPGG 849
           NKL   +P  +   L  L  L L  NQL+  +P G
Sbjct: 86  NKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDG 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 2e-08
 Identities = 78/491 (15%), Positives = 141/491 (28%), Gaps = 131/491 (26%)

Query: 1   MGYITQPYQLLICLQLLLFYSQCSAILCS-HDQSSALLQFKQLFSFQKHSSLSCEIFQQI 59
           +     P  +L  LQ L    Q      S  D SS +              L     Q  
Sbjct: 189 LKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNI-------------KLRIHSIQAE 233

Query: 60  SRPKMMSWKEDADC-CSWDGVTCDSATGHVIGLDLSCSWLHGNIPS-NSSLF-FLPRLRK 116
            R +++  K   +C      V  ++        +LSC  L   + +    +  FL     
Sbjct: 234 LR-RLLKSKPYENCLLVLLNV-QNAK--AWNAFNLSCKIL---LTTRFKQVTDFLSAATT 286

Query: 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFI 176
            +++ +       S   T      +LL              L      L    L+ N   
Sbjct: 287 THISLDHH-----SMTLTPD-EVKSLLLKY-----------LDCRPQDLPREVLTTN--- 326

Query: 177 GHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ 236
              P         R L +        I  S+ + +         +           + + 
Sbjct: 327 ---P---------RRLSI--------IAESIRDGLATWDNWKHVNC-------DKLTTII 359

Query: 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF--SGHIPSSFSNLQQLLWLNLEY 294
           +     L+        PA       +  +  LS   F  S HIP+    L  L+W ++  
Sbjct: 360 ESSLNVLE--------PAEY-----RKMFDRLSV--FPPSAHIPTI---LLSLIWFDVIK 401

Query: 295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELL----NLTEIYLSFSNFSGSVE 350
           ++    +  +   L + S +     E   SIPS   EL     N   ++ S       V+
Sbjct: 402 SD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI------VD 451

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410
            Y+  K  +   L    +             + ++    L      E     R       
Sbjct: 452 HYNIPKTFDSDDLIPPYLD---------QYFYSHI-GHHLKNIEHPERMTLFRMV----F 497

Query: 411 LDLS--ENQIGGRIPSWMWDIGV-HTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG 467
           LD    E +I     +W     + +TL +L   + ++         N        N++  
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-------DNDPKYERLVNAILD 550

Query: 468 SLPDLPPHMVS 478
            LP +  +++ 
Sbjct: 551 FLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 6e-06
 Identities = 90/543 (16%), Positives = 171/543 (31%), Gaps = 123/543 (22%)

Query: 229 PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLL 288
              +  L+Q   L+L     V  I   LG+  T +A     S      +        ++ 
Sbjct: 134 LQPYLKLRQ-ALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDF------KIF 185

Query: 289 WLNLEYNNFVGKIPDMFTNL-TQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347
           WLNL+  N    + +M   L  Q+     + ++   +I   I  +               
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------------- 232

Query: 348 SVELYDFAKLKNLK--VLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ 405
             EL    K K  +  +L L N    V      N       A +LS C I      L T 
Sbjct: 233 --ELRRLLKSKPYENCLLVLLN----VQNAKAWN-------AFNLS-CKI------LLTT 272

Query: 406 HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSL 465
              ++ D     +              T I LD     LT     P +    L      L
Sbjct: 273 RFKQVTD----FLSA---------ATTTHISLDHHSMTLT-----PDEVKSLL---LKYL 311

Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLET 525
                DLP  +++ +    S+  E            +  ++ + L+  I   L  + LE 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSL--NVLEP 368

Query: 526 LDLRMNNFQG-SI-PQTNAKGCKLTYLRLS---GNHLEGPLPPSLTNCVKLQFLDVGNNN 580
            + R   F   S+ P        +  + LS    + ++  +   +    K   ++     
Sbjct: 369 AEYR-KMFDRLSVFP----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 581 LSGQIPECLGNSTLQVLDMR------MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
            +  IP       +++ +        ++++  ++P+TF                   +PP
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTF--------------DSDDLIPP 467

Query: 635 SLVN--CQYL--EVLDVGNNQIDDTFPYW-LDVLLE-LQVLILRSNRFW---GPIGDTKT 685
            L      ++   + ++ + +    F    LD     L+  I   +  W   G I +T  
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 686 RVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL-------PGSSNY 738
           ++ F K  I D +  +   ++    +  F  +     N +   Y  L          + +
Sbjct: 526 QLKFYKPYICD-NDPKYERLVNA--ILDF--LPKIEENLICSKYTDLLRIALMAEDEAIF 580

Query: 739 YES 741
            E+
Sbjct: 581 EEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 78/255 (30%)

Query: 635 SLVN--CQYLEVLDVGNNQIDDTFPYWLDV--------LLE-LQVLILRSNRFWGPIGDT 683
            +    C   +V    + +I     +WL++        +LE LQ L+ + +  W    D 
Sbjct: 165 WVALDVCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 684 KTRVPFP------KLRIMDCSHNQLTGVLPL---WYLESFKAMMHG-------NNNSVEV 727
            + +         +LR +  S      +L L      +++ A               V  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-- 277

Query: 728 GYMRLPGSSNYYESIFLTMKGIDL-QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK- 785
               L  ++  + S+      +   +++ +L  +             +P  V   N  + 
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ------DLPREVLTTNPRRL 330

Query: 786 SL----------------NISHNNLTGCIPSSLRNLTELESLDL---------SSNKLAG 820
           S+                +++ + LT  I SSL  L   E   +         S++    
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---- 386

Query: 821 RIPTQLASLNYLSVL 835
            IPT L     LS++
Sbjct: 387 -IPTIL-----LSLI 395

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 356 KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSE 415
              ++K L L N   +          F  L  L      ++    NL   ++L+ L+LS+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL----PWKNLEYLHLDSN 463
           N++       + +     L  L+LS N +  +  +      +NL+ L L + 
Sbjct: 74  NRV-SGGLEVLAE-KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 762 TIDLSSNRFQR-KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
            + L ++R    K+  +  +   L+ L+  +  LT    ++L  L +L+ L+LS N+++G
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78

Query: 821 RIPTQLASLNYLSVLNLSNNQLE 843
            +         L+ LNLS N+++
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
                 +   +      I   + KLN LK L +S N ++G +         L  L+LS N
Sbjct: 41  FEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 817 KLAG-RIPTQLASLNYLSVLNLSNN 840
           K+        L  L  L  L+L N 
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
           +++ +L  LD S +   G +       ++L +L+   N  +  I +    L +L  L L+
Sbjct: 17  SDVKEL-VLDNSRSN-EGKLEGLTDEFEELEFLSTI-NVGLTSIAN-LPKLNKLKKLELS 72

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN--ISLSVSTK 375
            N + G +     +  NLT + LS +       +    KL+NLK L L N  ++     +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 376 LTANSSFPNLSALD 389
                  P L+ LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 280 SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIY 339
           + S++++L+  N   N   GK+  +     +L FL       + SI +++ +L  L ++ 
Sbjct: 15  TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLE 70

Query: 340 LSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFP 399
           LS +  SG +E+    K  NL  L+LS   +   + +       NL +LDL  C ++   
Sbjct: 71  LSDNRVSGGLEVL-AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 400 D 400
           D
Sbjct: 130 D 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 50/147 (34%)

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI 447
           LD S  N  +         +LE L      +                          TSI
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGL--------------------------TSI 57

Query: 448 DHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
            +LP    L+ L L                     S+N ++G +        ++ +L+LS
Sbjct: 58  ANLPKLNKLKKLEL---------------------SDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 507 NNSLS--GQIPQCLGNSTLETLDLRMN 531
            N +     I        L++LDL   
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542
           + S  G++         +++L   N  L+  I      + L+ L+L  N   G +     
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 543 KGCKLTYLRLSGNHLEGPL-PPSLTNCVKLQFLDVGNN 579
           K   LT+L LSGN ++       L     L+ LD+ N 
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
              L  L+        + I+     +   L  L+L S N        L      L +L+L
Sbjct: 41  FEELEFLSTINVGL--TSIA-NL-PKLNKLKKLEL-SDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 171 SINSF--IGHIPSSFSNLHQLRHLDLQSNNFVGKIP---ASLGNNITQLAYLD 218
           S N    +  I      L  L+ LDL  N  V  +     ++   + QL YLD
Sbjct: 96  SGNKIKDLSTI-EPLKKLENLKSLDL-FNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 38/161 (23%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN--NITQLAYL 217
           +++ +L   +   N   G +        +L  L   +         S+ N   + +L  L
Sbjct: 17  SDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHI 277
           +LS N  SG +         L +L+L  N            +++ +  L           
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI---------KDLSTIEPL----------- 109

Query: 278 PSSFSNLQQLLWLNLEYNNFVGKIPD----MFTNLTQLSFL 314
                 L+ L  L+L  N  V  + D    +F  L QL++L
Sbjct: 110 ----KKLENLKSLDLF-NCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 27/132 (20%)

Query: 545 CKLTYLRLSGNHL-EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
             +  L L  +   EG L        +L+FL   N  L+                  + N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----------------SIAN 59

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD-TFPYWLDV 662
               L +       L  L L+ NR+ G L      C  L  L++  N+I D +    L  
Sbjct: 60  LP-KLNK-------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111

Query: 663 LLELQVLILRSN 674
           L  L+ L L + 
Sbjct: 112 LENLKSLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 17/142 (11%)

Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPA--SLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
           + ++N  + R LDL+      KIP   +LG  + Q   +D S N         F  L++L
Sbjct: 13  AQYTNAVRDRELDLRGY----KIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRL 66

Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS--GHIPSSFSNLQQLLWLNLEYNN 296
             L +++N  +  I   L   +  L  L L++N     G +    ++L+ L +L +   N
Sbjct: 67  KTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCIL-RN 123

Query: 297 FVGKIPD----MFTNLTQLSFL 314
            V         +   + Q+  L
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVG--KLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
           L  F  ID S N    +I ++ G   L  LK+L +++N +        + L +L  L L+
Sbjct: 41  LDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 815 SNKLAG-RIPTQLASLNYLSVLNLSNN 840
           +N L        LASL  L+ L +  N
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 550 LRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQVLDMRMNNFSGS 607
           ++L+   +E       TN V+ + LD+    +   I E LG +      +D   +N    
Sbjct: 2   VKLTAELIE--QAAQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFS-DNEIRK 56

Query: 608 LPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDV----- 662
           L   F     L +L +N NR+             L  L + NN + +      D+     
Sbjct: 57  L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE----LGDLDPLAS 111

Query: 663 LLELQVLILRSN 674
           L  L  L +  N
Sbjct: 112 LKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
            +DL   +    I  +   L+   +++ S N +          L  L++L +++N++   
Sbjct: 23  ELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI 79

Query: 822 IPTQLASLNYLSVLNLSNNQLE 843
                 +L  L+ L L+NN L 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
            N  +   LDL        I +  + L Q   ++   +N + K+   F  L +L  L + 
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFS-DNEIRKLDG-FPLLRRLKTLLVN 72

Query: 318 YNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN--ISLSVST 374
            N  I  I   + + L +LTE+ L+ ++     +L   A LK+L  L +    ++     
Sbjct: 73  NNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 131

Query: 375 KLTANSSFPNLSALDLSACNISE 397
           +L      P +  LD     + E
Sbjct: 132 RLYVIYKVPQVRVLDFQKVKLKE 154

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 279 SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLNLT 336
           + ++N  +   L+L     +  I ++   L Q   +  + NE+  +   P     L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLK 67

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS 396
            + ++ +     +       L +L  L L+N SL     L   +S  +L+ L +    ++
Sbjct: 68  TLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 397 EFPD 400
               
Sbjct: 127 NKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 33/141 (23%)

Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
            +    ++      LDL    I    +   T  Q + +D S+N+I               
Sbjct: 10  EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--------------- 54

Query: 434 LIELDLSRNFLTSIDHLPW-KNLEYLHLDSN---SLQGSLPDLPPHMVSFSISNNSLT-- 487
                        +D  P  + L+ L +++N    +   L    P +    ++NNSL   
Sbjct: 55  -----------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 488 GEIPSSFCNLSSIQYLDLSNN 508
           G++     +L S+ YL +  N
Sbjct: 104 GDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 34/171 (19%)

Query: 503 LDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNH---LEG 559
           + L+   +  Q  Q         LDLR       I    A   +   +  S N    L+G
Sbjct: 2   VKLTAELIE-QAAQYTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLV 619
                     +L+ L V NN +  +I E L  +               LP        L 
Sbjct: 60  -----FPLLRRLKTLLVNNNRIC-RIGEGLDQA---------------LPD-------LT 91

Query: 620 SLNLNGNRLKGPLP-PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVL 669
            L L  N L        L + + L  L +  N + +   Y L V+ ++  +
Sbjct: 92  ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 762 TIDLSSNRFQR-KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
            + L + +    KI  +  +  +L+ L++ +  L     S+L  L +L+ L+LS N++ G
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG 85

Query: 821 RIPTQLASLNYLSVLNLSNNQLE 843
            +      L  L+ LNLS N+L+
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 257 GNNITQLAYLDLSSNGFS-GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
                 +  L L +   + G I    +    L +L+L  N  +  + +    L +L  L 
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVSN-LPKLPKLKKLE 77

Query: 316 LAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN--ISLSVS 373
           L+ N + G +     +L NLT + LS +       L    KL+ LK L L N  ++    
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 374 TKLTANSSFPNLSALDLSACNISE 397
            + +     P L+ LD       E
Sbjct: 138 YRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDL 390
               + E+ L     +        A+  NL+ LSL N+ L     ++     P L  L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLEL 78

Query: 391 SACNISEFPDNLRTQ-HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS--- 446
           S   I    D L  +   L  L+LS N++   I +      +  L  LDL    +T+   
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 447 -----IDHLPWKNLEYL 458
                   LP   L YL
Sbjct: 138 YRESVFKLLP--QLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
                 + L +      +   + KL  LK L +S N + G +      L  L  L+LS N
Sbjct: 48  FVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 817 KLAG-RIPTQLASLNYLSVLNLSNNQL 842
           KL        L  L  L  L+L N ++
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN--NITQLAYL 168
              +R+L L     N  KI  G T +F +L  L L +         S+ N   + +L  L
Sbjct: 23  PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 169 DLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN-----NITQLAYLDLSSN- 222
           +LS N   G +      L  L HL+L  N         +        +  L  LDL +  
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNCE 131

Query: 223 --SFSGHIPSSFSNLQQLCYLDLDDN 246
             + + +  S F  L QL YLD  D 
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542
             S  G+I        ++++L L N  L   +        L+ L+L  N   G +     
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 543 KGCKLTYLRLSGNHLEGP--LPPSLTNCVKLQFLDVGNN 579
           K   LT+L LSGN L+    L P L     L+ LD+ N 
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 29/133 (21%)

Query: 545 CKLTYLRLSGNHL-EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
             +  L L      +G +       V L+FL + N  L                   ++N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----------------SVSN 66

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDD--TFPYWLD 661
               LP+       L  L L+ NR+ G L         L  L++  N++ D  T    L 
Sbjct: 67  LP-KLPK-------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LK 117

Query: 662 VLLELQVLILRSN 674
            L  L+ L L + 
Sbjct: 118 KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 34/159 (21%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
             + +L  LD   ++  G I    +    L  L L  N  +  + ++L     +L  L+L
Sbjct: 24  AAVREL-VLDNCKSN-DGKIEGLTAEFVNLEFLSL-INVGLISV-SNLPKL-PKLKKLEL 78

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
           S N   G +      L  L +L+L  N            +I+ L  L             
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKL---------KDISTLEPL------------- 116

Query: 280 SFSNLQQLLWLNLEYNNFVGKIPD----MFTNLTQLSFL 314
               L+ L  L+L +N  V  + D    +F  L QL++L
Sbjct: 117 --KKLECLKSLDL-FNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/147 (17%), Positives = 40/147 (27%), Gaps = 50/147 (34%)

Query: 388 LDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI 447
           LD    N  +          LE L L    +                           S+
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--------------------------ISV 64

Query: 448 DHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
            +LP    L+ L L                     S N + G +      L ++ +L+LS
Sbjct: 65  SNLPKLPKLKKLEL---------------------SENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 507 NNSLS--GQIPQCLGNSTLETLDLRMN 531
            N L     +        L++LDL   
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNC 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           +     + L  N   +KI  +    ++L+ L IS+N +     S +  L  L  L +S+N
Sbjct: 69  MENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNN 125

Query: 817 KLAG-RIPTQLASLNYLSVLNLSNNQL 842
           K+       +LA+L+ L  L L+ N L
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           ++ A+L + +    +L LS+N     I SS S ++ L  L+L  N    KI ++      
Sbjct: 39  KMDATL-STLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 311 LSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           L  L ++YN+ I S+ S I +L+NL  +Y+S +  +   E+   A L  L+ L L+ 
Sbjct: 95  LEELWISYNQ-IASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 15/142 (10%)

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN--ISLSVSTKLTANSSFPNLSAL 388
                 ++ L              + LK  K L+LS   I      K+++ S   NL  L
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRIL 75

Query: 389 DLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID 448
            L    I +  +       LE L +S NQI   +        +  L  L +S N +T+  
Sbjct: 76  SLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSGIE---KLVNLRVLYMSNNKITNWG 131

Query: 449 HL----PWKNLEYLHLDSNSLQ 466
            +        LE L L  N L 
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNF 604
           +   L      +E  +  +L+     + L +  NN+  +I   L     L++L +  N  
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

Query: 605 SGSLPQTFAKSCVLVSLNLNGNR---LKGPLPPSLVNCQYLEVLDVGNNQIDDTFP-YWL 660
              +    A +  L  L ++ N+   L G     +     L VL + NN+I +      L
Sbjct: 83  K-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 661 DVLLELQVLILRSN 674
             L +L+ L+L  N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
           L   I   I  + ++ S L   +HL L +NN   KI +SL + +  L  L L  N     
Sbjct: 30  LHGMIPP-IEKMDATLSTLKACKHLALSTNNIE-KI-SSL-SGMENLRILSLGRNLIK-K 84

Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGN--NITQLAYLDLSSNGFS--GHIPSSFSN 283
           I +  +    L  L +  N       ASL     +  L  L +S+N  +  G I    + 
Sbjct: 85  IENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAA 138

Query: 284 LQQLLWLNLEYN 295
           L +L  L L  N
Sbjct: 139 LDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLT 806
           + +D  +   L     + LS+N  + KI   +  + +L+ L++  N +   I +      
Sbjct: 38  EKMDATLST-LKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVAD 93

Query: 807 ELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            LE L +S N++A  + + +  L  L VL +SNN++ 
Sbjct: 94  TLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSL 365
           T   ++  L       I  + +++  L     + LS +N    +     + ++NL++LSL
Sbjct: 23  TEAEKVE-LHGMIPP-IEKMDATLSTLKACKHLALS-TNNIEKIS--SLSGMENLRILSL 77

Query: 366 SNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSW 425
               +     L A +    L  L +S   I+     +     L +L +S N+I       
Sbjct: 78  GRNLIKKIENLDAVA--DTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITN----- 129

Query: 426 MWDI----GVHTLIELDLSRNFLTSIDHLPWKNLEY 457
             +I     +  L +L L+ N L +         EY
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 41/168 (24%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 91  LDLSCSWLHGNIPS----NSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLC 146
            +     LHG IP     +++L  L   + L L+ N+    KISS       +L +L L 
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISS--LSGMENLRILSLG 78

Query: 147 SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIP-- 204
                  I   L      L  L +S N  I  + S    L  LR L + SNN +      
Sbjct: 79  RNLIK-KIEN-LDAVADTLEELWISYN-QIASL-SGIEKLVNLRVLYM-SNNKITNWGEI 133

Query: 205 ASLGNNITQLAYLDLSSNSFSGHIPSS----------FSNLQQLCYLD 242
             L     +L  L L+ N        +             L  L  LD
Sbjct: 134 DKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIP--QCLGNSTLETLDLRMNNFQGSIPQTNAKGCK 546
           ++ ++   L + ++L LS N++  +I     + N  L  L L  N  +  I   +A    
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISSLSGMEN--LRILSLGRNLIK-KIENLDAVADT 94

Query: 547 LTYLRLSGN---HLEGPLPPSLTNCVKLQFLDVGNNNLS--GQIPECLGNSTLQVLDMRM 601
           L  L +S N    L G     +   V L+ L + NN ++  G+I +      L+ L +  
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 602 N 602
           N
Sbjct: 150 N 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            L+     +   + ++L  L   + L LS+N +  +I + L+ +  L +L+L  N ++
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK 83

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 25/202 (12%), Positives = 56/202 (27%), Gaps = 22/202 (10%)

Query: 61  RPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLA 120
                   +  +         D +        L+   + G    +      P L+ L + 
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 121 FNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP 180
                 S +        P+L  L L    + G        ++     L  S + F     
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVL----YVGVEDYGFDGDMNVFRPL-FSKDRF----- 251

Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPASLGN--NITQLAYLDLSSNSFSG----HIPSSFSN 234
                   L+ L +        +         + QL  +D+S+   +      +      
Sbjct: 252 ------PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 235 LQQLCYLDLDDNHFVGEIPASL 256
           ++ L ++++  N+   E+   L
Sbjct: 306 IKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 14/164 (8%)

Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY-NELIGSIPSS 328
           S      +      +  L  L ++  N +        NL  L  +     + ++  I  S
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 329 IFELLNLTEIYLSFSNFSGSVELYDFA------KLKNLKVLSLSN--ISLSVSTKLTANS 380
               L    +Y+   ++    ++  F       +  NLK L + +      V      + 
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 381 SFPNLSALDLSACNIS-----EFPDNLRTQHQLELLDLSENQIG 419
             P L  +D+SA  ++        D++     L+ +++  N + 
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 21/184 (11%)

Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSL--TLLDLCSCNFTGSIPPSLGNNI-TQLAY 167
                 L     DF   +IS         +   +  L +    G+   S+G      L  
Sbjct: 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKS 197

Query: 168 LDLSINSFIGHIPSSF--SNLHQLRHLDL--QSNNFVGKI------PASLGNNITQLAYL 217
           L++        +      S+L  L  L L     ++          P    +    L +L
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 218 DLSSNSFSGHIPSSFSN---LQQLCYLDLDDNHF----VGEIPASLGNNITQLAYLDLSS 270
            +        +   F     L QL  +D+            +   +      L ++++  
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI-KHLKFINMKY 316

Query: 271 NGFS 274
           N  S
Sbjct: 317 NYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 30/227 (13%)

Query: 447 IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLS 506
           +  L    +     +          +  +   F+       G+I      +S I+ +DLS
Sbjct: 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS 165

Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT 566
                   P       L  L ++  N      +       L  L +    L   +   + 
Sbjct: 166 --------PVLDAMPLLNNLKIKGTNNLSIGKKPR---PNLKSLEIISGGLPDSVVEDIL 214

Query: 567 --NCVKLQFLDV--GNNNLSG--------QIPECLGNSTLQVLDMRMNNFSGSLPQTFAK 614
             +   L+ L +  G  +            +        L+ L +        + + F +
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 615 SCV---LVSLNLNGNRLKG----PLPPSLVNCQYLEVLDVGNNQIDD 654
           S +   L +++++   L       L   +   ++L+ +++  N + D
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 14/94 (14%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGK---LNSLKSLNISHNNLTG----CIPSSLRNLTELE 809
                 + +     Q  + E+  +   L  L++++IS   LT      +   +  +  L+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 810 SLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843
            +++  N L+  +  +L   +    +++S++Q  
Sbjct: 311 FINMKYNYLSDEMKKELQK-SLPMKIDVSDSQEY 343

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF--CNLSSIQYLDL---S 506
              L  L +   +         P++ S  I +  L   +       +L +++ L L    
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 507 NNSLSGQIPQCLGN-------STLETLDLRMNNFQGSIPQTNAKG---CKLTYLRLSGNH 556
            +                     L+ L +     Q  + +   +     +L  + +S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 557 L--EG--PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS 592
           L  EG   L   +     L+F+++  N LS ++ + L  S
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 34/188 (18%)

Query: 357 LKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE------FPDNLRTQHQLEL 410
           L  + +L+   I  + +  +      PNL +L++ +  + +         +L    +L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLP 470
               E+           D  ++    L     F          NL++L +     Q  + 
Sbjct: 227 YVGVEDYGF--------DGDMNVFRPLFSKDRF---------PNLKWLGIVDAEEQNVVV 269

Query: 471 ------DLPPHMVSFSISNNSLTGE----IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN 520
                 D+ P + +  IS   LT E    +      +  ++++++  N LS ++ + L  
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

Query: 521 STLETLDL 528
           S    +D+
Sbjct: 330 SLPMKIDV 337

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
           L L  N         L   +  L  L+L  N  +G  P++F     +  L L +N    E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KE 92

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
           I   +   + QL  L+L  N  S  +P SF +L  L  LNL  +N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL-ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPS-SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           IP       T    L L+ N          F  L  L+ L L+ N   G  P+ F   + 
Sbjct: 27  IPLH-----TT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 311 LSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           +  L L  N++   I + +F  L  L  + L   N    V    F  L +L  L+L++
Sbjct: 80  IQELQLGENKI-KEISNKMFLGLHQLKTLNLY-DNQISCVMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 101 NIPSNSSLFFLPRLRKLNLAFNDFNGSKISS-GFTDQFPSLTLLDLCSCNFTGSIPPSLG 159
           +IP ++         +L L  N+    +ISS G   + P L  L+L   N    I P+  
Sbjct: 26  DIPLHT--------TELLLNDNEL--GRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAF 74

Query: 160 NNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLD 218
              + +  L L  N  I  I +  F  LHQL+ L+L  N  +  +      ++  L  L+
Sbjct: 75  EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLN 132

Query: 219 LSSNSF 224
           L+SN F
Sbjct: 133 LASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 756 ILTTFATIDLSSNRFQRKIPE-VVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
           I      + L+ N   R   + + G+L  L  L +  N LTG  P++    + ++ L L 
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86

Query: 815 SNKLAGRIPTQL-ASLNYLSVLNLSNNQL 842
            NK+   I  ++   L+ L  LNL +NQ+
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSL-RNLTELESLDLSS 815
           L     ++L  N+     P      + ++ L +  N +   I + +   L +L++L+L  
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD 111

Query: 816 NKLAGRIPT-QLASLNYLSVLNLSNN 840
           N+++  +       LN L+ LNL++N
Sbjct: 112 NQIS-CVMPGSFEHLNSLTSLNLASN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 25/234 (10%)

Query: 73  CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSG 132
           C  W  +  D +    +  DL+   LH ++        +   R      +       S  
Sbjct: 36  CKRWYRLASDESLWQTL--DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-- 91

Query: 133 FTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHL 192
                  +  +DL +     S    + +  ++L  L L        I ++ +    L  L
Sbjct: 92  ----PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 193 DLQSNNFVG-KIPASLGNNITQLAYLDLSS------NSFSGHIPSSFSNLQQL----CYL 241
           +L   +        +L ++ ++L  L+LS             +      + QL       
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207

Query: 242 DLDDNHFVGEIPASLGNNITQLAYLDLSS-NGFSGHIPSSFSNLQQLLWLNLEY 294
           +L  +       ++L      L +LDLS            F  L  L  L+L  
Sbjct: 208 NLQKSDL-----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 46/260 (17%), Positives = 80/260 (30%), Gaps = 34/260 (13%)

Query: 326 PSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
           P     LL+   I            L +      ++ + LSN  + VST     S    L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 386 SALDLSACNISEFPDNLRTQH-QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
             L L    +S+   N   ++  L  L+L          S         L  L       
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNL----------SGCSGFSEFALQTL------- 163

Query: 445 TSIDHLPWKNLEYLHL------DSNSLQGSLPDLPPHMVSFSIS--NNSLTGE-IPSSFC 495
             +       L+ L+L          +Q ++  +   +   ++S    +L    + +   
Sbjct: 164 --LSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219

Query: 496 NLSSIQYLDLSN-NSLSGQIPQCLGNST-LETLDL-RMNNFQGSIPQTNAKGCKLTYLRL 552
              ++ +LDLS+   L     Q       L+ L L R  +          +   L  L++
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279

Query: 553 SGNHLEGPLPPSLTNCVKLQ 572
            G   +G L         LQ
Sbjct: 280 FGIVPDGTLQLLKEALPHLQ 299

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGS 324
           +D S    +  +P+      Q+L+L   Y+N + K+   +F  LTQL+ L L  N+L   
Sbjct: 14  VDCSGKSLAS-VPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQL-TV 68

Query: 325 IPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           +P+ +F+ L  LT++ L+  N   S+    F  LK+L  + L N
Sbjct: 69  LPAGVFDKLTQLTQLSLN-DNQLKSIPRGAFDNLKSLTHIWLLN 111

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 21/132 (15%)

Query: 496 NLSSIQYLDLSN-NSLSGQIPQCLG-----NSTLETLDLRMNNFQGSIPQTNAKGCK--- 546
           N   ++ ++L+N  ++     +        N+ ++   +        +    A+  K   
Sbjct: 34  NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93

Query: 547 -LTYLRLSGNHLEGP----LPPSLTNCVKLQFLDVGNNNLS------GQIPECL-GNSTL 594
            L  L +  N + G     L  +L +   L  L + N +         +I   L  N+TL
Sbjct: 94  TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL 153

Query: 595 QVLDMRMNNFSG 606
                       
Sbjct: 154 LKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	957
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.49

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-91  Score=860.24  Aligned_cols=712  Identities=32%  Similarity=0.491  Sum_probs=536.1

Q ss_pred             cCCCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccc--
Q 002167           24 SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGN--  101 (957)
Q Consensus        24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~--  101 (957)
                      +++.+.++|++||++||+++.++.               ++++|+.+++||.|+||+|+  .++|++|+|+++++.|.  
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~---------------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~   67 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN---------------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFS   67 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT---------------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHH
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc---------------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccC
Confidence            445567899999999999997542               58899988899999999998  58999999999999998  


Q ss_pred             -cCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCch--hhhhcCCCCCEEEccCCcCCCC
Q 002167          102 -IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP--SLGNNITQLAYLDLSINSFIGH  178 (957)
Q Consensus       102 -~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~--~l~~~l~~L~~L~Ls~n~l~~~  178 (957)
                       +++  ++..+++|+.++++.+.+..  +|+.+ +.+++|++|+|++|.+.|.+|.  .++. +++|++|+|++|.+.+.
T Consensus        68 ~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~  141 (768)
T 3rgz_A           68 AVSS--SLLSLTGLESLFLSNSHING--SVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFP  141 (768)
T ss_dssp             HHHH--HTTTCTTCCEEECTTSCEEE--CCCCC-CCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECC
T ss_pred             ccCh--hHhccCcccccCCcCCCcCC--Cchhh-ccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCc
Confidence             877  88999999999999987743  55666 9999999999999999999998  8887 99999999999999988


Q ss_pred             cchhc-cCCCCCCEEEccCCcCCCCCchhh--hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchh
Q 002167          179 IPSSF-SNLHQLRHLDLQSNNFVGKIPASL--GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS  255 (957)
Q Consensus       179 ~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l--~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~  255 (957)
                      +|..+ .++++|++|++++|.+++..|..+  ..++++|++|++++|.+++..|.  .++++|++|++++|++++.+|. 
T Consensus       142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-  218 (768)
T 3rgz_A          142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-  218 (768)
T ss_dssp             SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-
T ss_pred             CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-
Confidence            88766 899999999999999998877762  23899999999999999876653  8899999999999999987877 


Q ss_pred             HhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcc-cC
Q 002167          256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL-LN  334 (957)
Q Consensus       256 l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~  334 (957)
                      +.. +++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++
T Consensus       219 l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~  295 (768)
T 3rgz_A          219 LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT  295 (768)
T ss_dssp             CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred             ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence            655 999999999999999999999999999999999999999887765  88999999999999998899888775 88


Q ss_pred             CceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh-hhcCCCCCEEEC
Q 002167          335 LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDL  413 (957)
Q Consensus       335 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~L  413 (957)
                      |++|++++|.+.+.++. .+..+++|++|++++|.+.                        +.+|.. +..+++|++|++
T Consensus       296 L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~------------------------~~ip~~~l~~l~~L~~L~L  350 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS------------------------GELPMDTLLKMRGLKVLDL  350 (768)
T ss_dssp             CSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEE------------------------EECCHHHHTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCccch-HHhcCCCccEEECCCCccc------------------------CcCCHHHHhcCCCCCEEeC
Confidence            99999998888754432 3455555666555555421                        255654 677777777777


Q ss_pred             cCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcc
Q 002167          414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS  493 (957)
Q Consensus       414 s~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~  493 (957)
                      ++|.+++.+|..+...  +                                         ++|+.|++++|.+++.+|..
T Consensus       351 s~n~l~~~~p~~l~~l--~-----------------------------------------~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          351 SFNEFSGELPESLTNL--S-----------------------------------------ASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             CSSEEEECCCTTHHHH--T-----------------------------------------TTCSEEECCSSEEEEECCTT
T ss_pred             cCCccCccccHHHHhh--h-----------------------------------------cCCcEEEccCCCcCCCcChh
Confidence            7777777777766554  2                                         13334444444444444444


Q ss_pred             ccC--CCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCC
Q 002167          494 FCN--LSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK  570 (957)
Q Consensus       494 l~~--l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  570 (957)
                      +..  +++|++|++++|.+++.+|..+... +|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++
T Consensus       388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  467 (768)
T 3rgz_A          388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT  467 (768)
T ss_dssp             TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            333  4455555555555555555444332 5555555555555555555555566666666666666666666666666


Q ss_pred             CCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167          571 LQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN  649 (957)
Q Consensus       571 L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  649 (957)
                      |++|++++|++++.+|..+.. ++|++|++++|++++.+|.+++.+++|+.|+|++|++++.+|..+.++++|+.|++++
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            666666666666666665554 6666666666666666666666666666666666666666666666666666666666


Q ss_pred             CccccCccccccccccccEEEccccc---------c-------------cccCCCCCCccCCCCceEEEcCCCcCcCCCc
Q 002167          650 NQIDDTFPYWLDVLLELQVLILRSNR---------F-------------WGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP  707 (957)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~---------~-------------~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip  707 (957)
                      |++++.+|.++.....+..+.+..+.         .             .+..+..  ...++.+..++++.|.+.|.+|
T Consensus       548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~l~~~~~~g~~~  625 (768)
T 3rgz_A          548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ--LNRLSTRNPCNITSRVYGGHTS  625 (768)
T ss_dssp             SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG--GGGGGGTCCSCTTSCEEEEECC
T ss_pred             CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh--hhccccccccccccceecccCc
Confidence            66666666665555444333322211         0             0000000  0111222233333344433333


Q ss_pred             hHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEE
Q 002167          708 LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSL  787 (957)
Q Consensus       708 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  787 (957)
                      .                                            .+..++.|+.|||++|+++|.+|++++++++|+.|
T Consensus       626 ~--------------------------------------------~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  661 (768)
T 3rgz_A          626 P--------------------------------------------TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL  661 (768)
T ss_dssp             C--------------------------------------------SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred             h--------------------------------------------hhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence            2                                            12236789999999999999999999999999999


Q ss_pred             ECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCC
Q 002167          788 NISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLC  867 (957)
Q Consensus       788 ~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc  867 (957)
                      ||++|+++|.||+.|+++++|++||||+|+++|.||..++++++|++||+|+|+|+|+||.++||.+|...+|.||++||
T Consensus       662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred             eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 002167          868 GFPLSKSCSIDE  879 (957)
Q Consensus       868 g~~~~~~c~~~~  879 (957)
                      |.|+. .|....
T Consensus       742 g~~l~-~C~~~~  752 (768)
T 3rgz_A          742 GYPLP-RCDPSN  752 (768)
T ss_dssp             STTSC-CCCSCC
T ss_pred             CCCCc-CCCCCc
Confidence            99987 897633

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3e-72  Score=689.97  Aligned_cols=633  Identities=31%  Similarity=0.450  Sum_probs=540.0

Q ss_pred             EEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCc--hhhcCCCCCcEEECCCCccCccCchhhhhcCCCC
Q 002167           88 VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS--GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQL  165 (957)
Q Consensus        88 v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~--~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L  165 (957)
                      +..++++.++   .++....+..+++|++|+|++|.+.+. +|.  .+ +.+++|++|++++|.+.+.+|..+...+++|
T Consensus        79 L~~l~~~~~~---~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           79 LESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSL-GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             CCEEECTTSC---EEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGG-GGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             ccccCCcCCC---cCCCchhhccCCCCCEEECCCCcCCCc-CCChHHH-hCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            3444555444   333223799999999999999999765 665  66 9999999999999999999998874459999


Q ss_pred             CEEEccCCcCCCCcchh---ccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEe
Q 002167          166 AYLDLSINSFIGHIPSS---FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLD  242 (957)
Q Consensus       166 ~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  242 (957)
                      ++|+|++|.+++..|..   +.++++|++|++++|.+.+..|.  . ++++|++|++++|.+++.+|. ++++++|++|+
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~  229 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--S-RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD  229 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T-TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--c-cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence            99999999999888877   89999999999999999877765  3 899999999999999988887 99999999999


Q ss_pred             ccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCcccccc-CcCceeeccCCcC
Q 002167          243 LDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL-TQLSFLGLAYNEL  321 (957)
Q Consensus       243 Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l  321 (957)
                      +++|++++.+|..+.. +++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+
T Consensus       230 Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          230 ISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             CCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             CcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            9999999899988877 999999999999999888765  89999999999999999999988775 9999999999999


Q ss_pred             CCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh
Q 002167          322 IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN  401 (957)
Q Consensus       322 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~  401 (957)
                      ++.+|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.                        +.+|..
T Consensus       307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~------------------------~~~p~~  362 (768)
T 3rgz_A          307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS------------------------GELPES  362 (768)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE------------------------ECCCTT
T ss_pred             CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC------------------------ccccHH
Confidence            99999999999999999999999998888877888888888888888742                        367777


Q ss_pred             hhcCC-CCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEE
Q 002167          402 LRTQH-QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS  480 (957)
Q Consensus       402 l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~  480 (957)
                      +..++ +|++|++++|.+++.+|..+.....                                          ++|++|+
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------~~L~~L~  400 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPK------------------------------------------NTLQELY  400 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTT------------------------------------------CCCCEEE
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhccc------------------------------------------CCccEEE
Confidence            87776 8999999999998887776543111                                          4566667


Q ss_pred             eccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCC
Q 002167          481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG  559 (957)
Q Consensus       481 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  559 (957)
                      +++|.+++.+|..+.++++|++|++++|.+++.+|..+... +|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus       401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG  480 (768)
T ss_dssp             CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence            77777777777788888888888888888888777776554 78888888888888888888888888888888888888


Q ss_pred             CCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccC
Q 002167          560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVN  638 (957)
Q Consensus       560 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  638 (957)
                      .+|..+.++++|++|++++|++++.+|.+++. ++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+..
T Consensus       481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            88888888888888888888888888888876 88888888888888888888888888999999999888888888877


Q ss_pred             CCCCcEEeCCCC----------------------ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEE
Q 002167          639 CQYLEVLDVGNN----------------------QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMD  696 (957)
Q Consensus       639 l~~L~~L~ls~n----------------------~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ld  696 (957)
                      +..+..+++..+                      .+.+..+..+..++.++.+++..|.+.|.+|...  ..+++|+.||
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~Ld  638 (768)
T 3rgz_A          561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLD  638 (768)
T ss_dssp             TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEE
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEE
Confidence            766665554431                      2445667777888888999999999999988766  6688999999


Q ss_pred             cCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcc
Q 002167          697 CSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE  776 (957)
Q Consensus       697 ls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  776 (957)
                      +++|+++|.+|..+                                            ..++.|+.|||++|+++|.||+
T Consensus       639 Ls~N~l~g~ip~~l--------------------------------------------~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          639 MSYNMLSGYIPKEI--------------------------------------------GSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             CCSSCCBSCCCGGG--------------------------------------------GGCTTCCEEECCSSCCCSCCCG
T ss_pred             CcCCcccccCCHHH--------------------------------------------hccccCCEEeCcCCccCCCCCh
Confidence            99999999999653                                            1257889999999999999999


Q ss_pred             cccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCc-cccc
Q 002167          777 VVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQ-LEGP  845 (957)
Q Consensus       777 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~  845 (957)
                      .|+++++|++||||+|+++|.||+.++++++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus       675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            9999999999999999999999999999999999999999999999975 445556666777885 7774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4e-58  Score=559.79  Aligned_cols=606  Identities=22%  Similarity=0.248  Sum_probs=401.5

Q ss_pred             EEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC
Q 002167          142 LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS  221 (957)
Q Consensus       142 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~  221 (957)
                      .+++++++++ ++|..+.   +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..+. ++++|++|++++
T Consensus         8 ~~~cs~~~L~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~   82 (680)
T 1ziw_A            8 VADCSHLKLT-QVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQH   82 (680)
T ss_dssp             EEECCSSCCS-SCCSCSC---TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCS
T ss_pred             eeECCCCCcc-ccccccC---CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCC
Confidence            4555555554 5554432   3556666666665555555556666666666666665544444444 566666666666


Q ss_pred             CCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167          222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI  301 (957)
Q Consensus       222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  301 (957)
                      |.+++..+..|+++++|++|++++|++++..|..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+++..
T Consensus        83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             CccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            6666444445666666666666666665322333433 666666666666666666666666666777777766666555


Q ss_pred             Ccccc--ccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCC
Q 002167          302 PDMFT--NLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN  379 (957)
Q Consensus       302 p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  379 (957)
                      +..+.  .+++|++|++++|.+++..|..+..+.+|+.|++.++.+.+....                            
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----------------------------  213 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE----------------------------  213 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH----------------------------
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH----------------------------
Confidence            54443  346677777777777666666666666666666666554321110                            


Q ss_pred             CccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceee
Q 002167          380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH  459 (957)
Q Consensus       380 ~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~  459 (957)
                                       .++..+ ..++|+.|++++|.+.+..|.++.....++|+.|++++|.++++.+..+..+    
T Consensus       214 -----------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l----  271 (680)
T 1ziw_A          214 -----------------KLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL----  271 (680)
T ss_dssp             -----------------HHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC----
T ss_pred             -----------------HHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc----
Confidence                             000001 1234445555555554444444443322335555555554444433222221    


Q ss_pred             ccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccC-----CCc----cc-cccccceeecc
Q 002167          460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ-----IPQ----CL-GNSTLETLDLR  529 (957)
Q Consensus       460 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~----~~-~~~~L~~L~L~  529 (957)
                                    ++|++|++++|.+.+..|..|..+++|++|++++|...+.     +|.    .+ ...+|++|+++
T Consensus       272 --------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~  337 (680)
T 1ziw_A          272 --------------PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME  337 (680)
T ss_dssp             --------------TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred             --------------ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence                          5666666677777666777777777788887777655432     221    22 23478888888


Q ss_pred             cccccCcCCCcCCCCCCccEEEccCCcCCCC--CCccccC--CCCCCeEEcCCCccccccCccccC-CcccEEECCCCcC
Q 002167          530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP--LPPSLTN--CVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNF  604 (957)
Q Consensus       530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l  604 (957)
                      +|++.+..+..+..+++|++|++++|.+...  ....+..  .++|+.|++++|++++..|..+.. ++|++|++++|.+
T Consensus       338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  417 (680)
T 1ziw_A          338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI  417 (680)
T ss_dssp             SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence            8888877777788888888888888875432  1222332  257888888888888777777765 7888888888888


Q ss_pred             CCCCc-cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc--cCccccccccccccEEEcccccccccCC
Q 002167          605 SGSLP-QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID--DTFPYWLDVLLELQVLILRSNRFWGPIG  681 (957)
Q Consensus       605 ~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~~  681 (957)
                      ++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.  +..|.++..+++|++|++++|++.+..+
T Consensus       418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~  497 (680)
T 1ziw_A          418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND  497 (680)
T ss_dssp             EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence            77665 57888888888888888888877888888888888888888876  5678888888888888888888876555


Q ss_pred             CCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccce
Q 002167          682 DTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFA  761 (957)
Q Consensus       682 ~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  761 (957)
                      ...  ..+++|+.|++++|++++..+..+-+                                    .....+..+++|+
T Consensus       498 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------~~~~~~~~l~~L~  539 (680)
T 1ziw_A          498 DML--EGLEKLEILDLQHNNLARLWKHANPG------------------------------------GPIYFLKGLSHLH  539 (680)
T ss_dssp             TTT--TTCTTCCEEECCSSCCGGGGSTTSTT------------------------------------SCCCTTTTCTTCC
T ss_pred             hhh--ccccccCEEeCCCCCccccchhhccC------------------------------------CcchhhcCCCCCC
Confidence            433  56788888999988887642211000                                    0000112368899


Q ss_pred             EEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc-CCCCCCeEECccC
Q 002167          762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNN  840 (957)
Q Consensus       762 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~ls~N  840 (957)
                      .|+|++|+++...+..|+++++|+.|+|++|++++..+..|.++++|++|+|++|++++.+|..+. .+++|+.+++++|
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            999999999965556799999999999999999988888899999999999999999999888887 7899999999999


Q ss_pred             cccccCCCCCCCCcc
Q 002167          841 QLEGPIPGGPQFNTF  855 (957)
Q Consensus       841 ~l~g~ip~~~~~~~~  855 (957)
                      ++.|.++...+|..|
T Consensus       620 ~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          620 PFDCTCESIAWFVNW  634 (680)
T ss_dssp             CCCBCCCCCSSEECC
T ss_pred             CcccCCccHHHHHHH
Confidence            999999863445444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.7e-56  Score=539.69  Aligned_cols=598  Identities=22%  Similarity=0.252  Sum_probs=412.9

Q ss_pred             EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167           91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL  170 (957)
Q Consensus        91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L  170 (957)
                      +|+++++++ .+|.  .+.  +++++|+|++|.+.+  +++..|.++++|++|++++|.+.+..|..+.. +++|++|+|
T Consensus         9 ~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L   80 (680)
T 1ziw_A            9 ADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNL   80 (680)
T ss_dssp             EECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEEC
T ss_pred             eECCCCCcc-cccc--ccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEEC
Confidence            566666664 3554  332  789999999999876  55554589999999999999999767777776 999999999


Q ss_pred             cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167          171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG  250 (957)
Q Consensus       171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  250 (957)
                      ++|.+++..+..|+++++|++|++++|.+.+..|..+. ++++|++|++++|.+++..|..++++++|++|++++|.+++
T Consensus        81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhhhccCCCCCEEECCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            99999876666799999999999999999855455665 89999999999999998888889999999999999999986


Q ss_pred             ccchhHhh-hccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCcccc---ccCcCceeeccCCcCCCCCC
Q 002167          251 EIPASLGN-NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFT---NLTQLSFLGLAYNELIGSIP  326 (957)
Q Consensus       251 ~ip~~l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p  326 (957)
                      ..+..+.. .+++|++|++++|.+++..|..+..+.+|+.|+++++.+.+.....+.   ..++|++|++++|.+++..|
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~  239 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN  239 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred             cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence            55554432 257899999999999988888888999999999988877543222111   23678888888888887777


Q ss_pred             cchhcccC--CceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCC-cChhhh
Q 002167          327 SSIFELLN--LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-FPDNLR  403 (957)
Q Consensus       327 ~~l~~l~~--L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~  403 (957)
                      ..+..++.  |++|++++|.+.+.. ...+..+++|++|++++|.                         +.. .|..+.
T Consensus       240 ~~~~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------------------------l~~~~~~~~~  293 (680)
T 1ziw_A          240 TTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNN-------------------------IQHLFSHSLH  293 (680)
T ss_dssp             TTTGGGGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCC-------------------------BSEECTTTTT
T ss_pred             hHhhccCcCCCCEEECCCCCcCccC-cccccCcccccEeeCCCCc-------------------------cCccChhhhc
Confidence            77776654  777777777665322 2223344444444444333                         222 233455


Q ss_pred             cCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEecc
Q 002167          404 TQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISN  483 (957)
Q Consensus       404 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  483 (957)
                      .+++|++|++++|...+.++..                 .+..+....+                  ...++|++|++++
T Consensus       294 ~l~~L~~L~L~~~~~~~~~~~~-----------------~lp~i~~~~~------------------~~l~~L~~L~l~~  338 (680)
T 1ziw_A          294 GLFNVRYLNLKRSFTKQSISLA-----------------SLPKIDDFSF------------------QWLKCLEHLNMED  338 (680)
T ss_dssp             TCTTCCEEECTTCBCCC-----------------------CCEECTTTT------------------TTCTTCCEEECCS
T ss_pred             CCCCccEEeccchhhhcccccc-----------------cccccChhhc------------------ccCCCCCEEECCC
Confidence            5666666666655443322100                 0000000000                  1126777888888


Q ss_pred             CCccCCCCccccCCCCCCEEEcccCcCccC-CCc-cccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC
Q 002167          484 NSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ-IPQ-CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL  561 (957)
Q Consensus       484 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  561 (957)
                      |.+++..+..|..+++|++|++++|.+... ++. .+..                     ...++|+.|++++|++++..
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~---------------------~~~~~L~~L~L~~n~l~~~~  397 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS---------------------LAHSPLHILNLTKNKISKIE  397 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG---------------------GTTSCCCEEECTTSCCCEEC
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc---------------------cccCcCceEECCCCCCCeEC
Confidence            888877777777788888888887765432 111 1110                     01135556666666665555


Q ss_pred             CccccCCCCCCeEEcCCCccccccCc-cccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc--cCCCcccc
Q 002167          562 PPSLTNCVKLQFLDVGNNNLSGQIPE-CLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK--GPLPPSLV  637 (957)
Q Consensus       562 p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~  637 (957)
                      |..+..+++|++|++++|.+++.+|. .+.. ++|++|++++|++.+..+..|..+++|+.|++++|.++  +.+|..+.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            55566666666666666666555542 3332 56666666666666555666666666666666666665  34566666


Q ss_pred             CCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCC------CCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167          638 NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDT------KTRVPFPKLRIMDCSHNQLTGVLPLWYL  711 (957)
Q Consensus       638 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~------~~~~~l~~L~~Ldls~N~l~g~ip~~~~  711 (957)
                      ++++|+.|++++|++++..|..+..+++|++|++++|++.+..+..      .....+++|+.|++++|+++ .+|...+
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~  556 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVF  556 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHc
Confidence            6666666777666666666666666667777777776665432211      12356788999999999988 4553221


Q ss_pred             hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167          712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH  791 (957)
Q Consensus       712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  791 (957)
                                                                 ..++.|+.|||++|++++..+..|..+++|+.|+|++
T Consensus       557 -------------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          557 -------------------------------------------KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             -------------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             -------------------------------------------ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence                                                       1257899999999999988888889999999999999


Q ss_pred             CcCCCCCchhhh-hccCCCEEECCCCcccccCc
Q 002167          792 NNLTGCIPSSLR-NLTELESLDLSSNKLAGRIP  823 (957)
Q Consensus       792 N~l~~~ip~~l~-~L~~L~~L~Ls~N~l~g~ip  823 (957)
                      |++++..|..++ .+++|+.|++++|++....+
T Consensus       594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999999898 89999999999999998654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-54  Score=535.39  Aligned_cols=573  Identities=24%  Similarity=0.254  Sum_probs=367.3

Q ss_pred             cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167          141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS  220 (957)
Q Consensus       141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls  220 (957)
                      +..+.++++++ .+|. +   .++|++|||++|.+++..|..|.++++|++|+|++|...+.++...+.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            35677777777 7776 2   56788888888888877778888888888888888866666643333378888888888


Q ss_pred             CCCCCCCCCcccCCCCcccEEeccCCCCccccchh--HhhhccCCcEEECcCCcCCccCc-ccccCcCCCcEEEeccCcC
Q 002167          221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS--LGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l  297 (957)
                      +|.+++..|..|+++++|++|++++|.+++.+|..  +.. +++|++|++++|.+++..+ ..|+++++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN-LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS-CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc-cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            88888777888888888888888888887656554  443 7778888888777776544 4677777777777777777


Q ss_pred             cccCCcccccc--CcCceeeccCCcCCCCCCcchhcccC------CceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167          298 VGKIPDMFTNL--TQLSFLGLAYNELIGSIPSSIFELLN------LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       298 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      .+..+..+..+  ++|+.|+++.|.+.+..|..+..+.+      |++|++++|.+.+..+......             
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-------------  227 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA-------------  227 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT-------------
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh-------------
Confidence            77777777666  67777777777776665555444333      4444444444332221110000             


Q ss_pred             ccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCC
Q 002167          370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH  449 (957)
Q Consensus       370 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~  449 (957)
                                                       .....++.+.++.+.+...                 ...+.+.....
T Consensus       228 ---------------------------------l~~~~l~~L~l~~~~~~~~-----------------~~~~~l~~~~~  257 (844)
T 3j0a_A          228 ---------------------------------ISKSQAFSLILAHHIMGAG-----------------FGFHNIKDPDQ  257 (844)
T ss_dssp             ---------------------------------SCSCCBSEEECCSSCCBCS-----------------SSCSSSTTGGG
T ss_pred             ---------------------------------cCcccccceeccccccccc-----------------ccccccCCCCh
Confidence                                             0011223333322111100                 00001111100


Q ss_pred             CCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecc
Q 002167          450 LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLR  529 (957)
Q Consensus       450 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~  529 (957)
                      ..+..+                .+++++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..            
T Consensus       258 ~~f~~l----------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~------------  309 (844)
T 3j0a_A          258 NTFAGL----------------ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA------------  309 (844)
T ss_dssp             TTTTTT----------------TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT------------
T ss_pred             hhhhcc----------------ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH------------
Confidence            000000                0245666666666666666666666677777777766666554443            


Q ss_pred             cccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCC
Q 002167          530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSL  608 (957)
Q Consensus       530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~  608 (957)
                                 +..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.. ++|++|++++|.+++. 
T Consensus       310 -----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-  377 (844)
T 3j0a_A          310 -----------FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-  377 (844)
T ss_dssp             -----------TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-
T ss_pred             -----------hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-
Confidence                       344445555555555555444555555555555555555554444444433 5555555555555421 


Q ss_pred             ccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccC-ccccccccccccEEEcccccccccCCCCCCcc
Q 002167          609 PQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT-FPYWLDVLLELQVLILRSNRFWGPIGDTKTRV  687 (957)
Q Consensus       609 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~  687 (957)
                          ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++. .+..+..+++|++|++++|++.+..+.. ...
T Consensus       378 ----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~  448 (844)
T 3j0a_A          378 ----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-TPS  448 (844)
T ss_dssp             ----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-SSC
T ss_pred             ----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-ccc
Confidence                12556666666666666 33432   34567777777777654 2234556777777777777776543322 223


Q ss_pred             CCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEccc
Q 002167          688 PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS  767 (957)
Q Consensus       688 ~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  767 (957)
                      .+++|+.|++++|.+++..+....                                       ...+..+++|+.|||++
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~---------------------------------------~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELC---------------------------------------WDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCC---------------------------------------SSCSSCBCCEECCCCCH
T ss_pred             cCCccccccCCCCccccccccccc---------------------------------------hhhhcCcccccEEECCC
Confidence            467888888888888754331100                                       00012267899999999


Q ss_pred             CccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCC
Q 002167          768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP  847 (957)
Q Consensus       768 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip  847 (957)
                      |++++.+|..|+.+++|+.|+|++|++++..|..+.  ++|++|||++|++++.+|..+.   +|+.|++++|++.|.|+
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            999999999999999999999999999998887776  8999999999999999998764   78899999999999988


Q ss_pred             CCCCCCcccCCcccCCcCCCCCCCCCCCCCCC
Q 002167          848 GGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDE  879 (957)
Q Consensus       848 ~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~  879 (957)
                      ..    .|..|...++..+||.+....|..+.
T Consensus       565 ~~----~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          565 LS----TFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             CC----SHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             cH----HHHHHHHhcCcccccccccCccCCch
Confidence            53    24445556778888887777887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-53  Score=510.53  Aligned_cols=542  Identities=23%  Similarity=0.226  Sum_probs=301.2

Q ss_pred             eeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167          116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ  195 (957)
Q Consensus       116 ~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  195 (957)
                      .++.++..++.  +|..+   .+++++|++++|.+++..|..+.. +++|++|+|++|.+.+..|..|+++++|++|+++
T Consensus        16 ~~~c~~~~l~~--iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           16 TYNCENLGLNE--IPGTL---PNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             EEECTTSCCSS--CCTTS---CTTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEECCCCCccc--CcCCC---CCcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            45555555432  45444   235566666666665443444444 6666666666666655555556666666666666


Q ss_pred             CCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCc
Q 002167          196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG  275 (957)
Q Consensus       196 ~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~  275 (957)
                      +|.+.+..|..+. ++++|++|++++|.+++..|..++++++|++|++++|++.+..+..+.. +++|++|++++|.+++
T Consensus        90 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           90 ANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCE
T ss_pred             CCcccccChhhhc-ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccc
Confidence            6655544444444 5556666666666555544455555555555555555555311122222 5555555555555554


Q ss_pred             cCcccccCcCCCc--EEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchh
Q 002167          276 HIPSSFSNLQQLL--WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYD  353 (957)
Q Consensus       276 ~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  353 (957)
                      ..+..++.+++|+  +|++++|.+.+..|..+.. .+|++|++++|.   .++..+..                      
T Consensus       168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~----------------------  221 (606)
T 3t6q_A          168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG----------------------  221 (606)
T ss_dssp             ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH----------------------
T ss_pred             cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh----------------------
Confidence            4444455555555  4455555554444433322 344444444432   11111111                      


Q ss_pred             hhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCc
Q 002167          354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT  433 (957)
Q Consensus       354 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~  433 (957)
                         +.+++...+.-..                                   +..+...+     +.   +..+.....  
T Consensus       222 ---l~~~~l~~l~~~~-----------------------------------~~~~~~~~-----i~---~~~~~~l~~--  253 (606)
T 3t6q_A          222 ---LKNSTIQSLWLGT-----------------------------------FEDMDDED-----IS---PAVFEGLCE--  253 (606)
T ss_dssp             ---TTTCEEEEEECCC-----------------------------------CTTSCCCC-----CC---GGGGGGGGG--
T ss_pred             ---ccccchhheechh-----------------------------------hccccccc-----cC---hhHhchhhc--
Confidence               1111111111000                                   00000000     00   000100000  


Q ss_pred             ceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccC
Q 002167          434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ  513 (957)
Q Consensus       434 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  513 (957)
                                                              .+++.|++++|.+++..+..|..+++|++|++++|.++ .
T Consensus       254 ----------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  292 (606)
T 3t6q_A          254 ----------------------------------------MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E  292 (606)
T ss_dssp             ----------------------------------------SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred             ----------------------------------------CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence                                                    13444555555555555555666777777777777666 4


Q ss_pred             CCccccc-cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCc-cccCCCCCCeEEcCCCcccccc--Cccc
Q 002167          514 IPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPP-SLTNCVKLQFLDVGNNNLSGQI--PECL  589 (957)
Q Consensus       514 ~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~--p~~~  589 (957)
                      +|..+.. .+|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence            4443322 2455555555554444444455555566666666655544433 2555566666666666555433  3333


Q ss_pred             cC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCc-cccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167          590 GN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ  667 (957)
Q Consensus       590 ~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  667 (957)
                      .. ++|++|++++|++.+..|..|..+++|+.|++++|++++..|. .+.++++|++|++++|.+.+..|..+..     
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  447 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-----  447 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-----
Confidence            33 4555555555555544455555555555555555555544332 2455555555555555555544444444     


Q ss_pred             EEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEE
Q 002167          668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTM  746 (957)
Q Consensus       668 ~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (957)
                                           +++|+.|++++|++++. +|..                                     
T Consensus       448 ---------------------l~~L~~L~L~~n~l~~~~~~~~-------------------------------------  469 (606)
T 3t6q_A          448 ---------------------LPALQHLNLQGNHFPKGNIQKT-------------------------------------  469 (606)
T ss_dssp             ---------------------CTTCCEEECTTCBCGGGEECSS-------------------------------------
T ss_pred             ---------------------CCCCCEEECCCCCCCccccccc-------------------------------------
Confidence                                 44555555555555542 1110                                     


Q ss_pred             echhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccC
Q 002167          747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQL  826 (957)
Q Consensus       747 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l  826 (957)
                           ..+..+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++.+|+.++++++| +|++++|++++.+|..+
T Consensus       470 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~  543 (606)
T 3t6q_A          470 -----NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL  543 (606)
T ss_dssp             -----CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred             -----hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence                 001125789999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             cCCCCCCeEECccCcccccCCCC
Q 002167          827 ASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       827 ~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                      ..+++|++|++++|+++|.++..
T Consensus       544 ~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          544 PILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             HHHHTSSEEECTTCCEECSGGGH
T ss_pred             ccCCCCCEEeCCCCCccccCCcH
Confidence            99999999999999999988743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.3e-53  Score=505.98  Aligned_cols=540  Identities=21%  Similarity=0.193  Sum_probs=306.1

Q ss_pred             CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167          115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL  194 (957)
Q Consensus       115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  194 (957)
                      ++++.+++.++.  +|..+   .++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..|.++++|++|++
T Consensus        14 ~~~~c~~~~l~~--ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           14 ITYQCMDQKLSK--VPDDI---PSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TEEECTTSCCSS--CCTTS---CTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CceEccCCCccc--CCCCC---CCCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            345555555543  44433   255566666666655333334443 556666666666555555555555555555555


Q ss_pred             cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcC
Q 002167          195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGF  273 (957)
Q Consensus       195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l  273 (957)
                      ++|.+.+..|..+. ++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+
T Consensus        88 s~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           88 TGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYI  165 (606)
T ss_dssp             TTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCC
T ss_pred             CCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcc
Confidence            55555544444444 55555555555555554444555555555555555555543 34444443 55555555555555


Q ss_pred             CccCcccccCcCCCc----EEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccc
Q 002167          274 SGHIPSSFSNLQQLL----WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV  349 (957)
Q Consensus       274 ~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  349 (957)
                      ++..+..++.+++|+    +|++++|.+.+..+..+..                         .+|++|++++|.+.+..
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-------------------------~~L~~L~L~~n~~~~~~  220 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-------------------------IKLHELTLRGNFNSSNI  220 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-------------------------CEEEEEEEESCCSCHHH
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccC-------------------------ceeeeeeccCCccchhH
Confidence            544444444443332    4444444444333333322                         24555555555444333


Q ss_pred             cchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEEC-cCCcCCCCCChhhhh
Q 002167          350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL-SENQIGGRIPSWMWD  428 (957)
Q Consensus       350 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~  428 (957)
                      ....+.++++|+.+++...............               ...+..+..+ .++.+++ ..+            
T Consensus       221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~~------------  272 (606)
T 3vq2_A          221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYTN------------  272 (606)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCTTSCCCSCCC---------------GGGGTTGGGS-EEEEEEECCCT------------
T ss_pred             HHHHhccccccccccccccccccCCcccccC---------------hHHhhhhhhc-cHhheeccccc------------
Confidence            3334445555555544433211100000000               0000011111 1222232 222            


Q ss_pred             hccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167          429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN  508 (957)
Q Consensus       429 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  508 (957)
                                                                              .+.+.+|. +..+++|+.|++++|
T Consensus       273 --------------------------------------------------------~~~~~~~~-~~~l~~L~~L~l~~~  295 (606)
T 3vq2_A          273 --------------------------------------------------------DFSDDIVK-FHCLANVSAMSLAGV  295 (606)
T ss_dssp             --------------------------------------------------------TCCGGGGS-CGGGTTCSEEEEESC
T ss_pred             --------------------------------------------------------cccccccc-cccCCCCCEEEecCc
Confidence                                                                    22233332 333444444444444


Q ss_pred             cCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccc--cC
Q 002167          509 SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQ--IP  586 (957)
Q Consensus       509 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p  586 (957)
                      .+. .+|......+|++|++++|++ +.+| .+ .+++|++|++++|+..+..  .+..+++|++|++++|.+++.  +|
T Consensus       296 ~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~  369 (606)
T 3vq2_A          296 SIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS  369 (606)
T ss_dssp             CCC-CCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred             cch-hhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence            443 222111122444444444444 3333 22 4455555555555433322  345566666666666666544  24


Q ss_pred             ccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC-ccccCCCCCcEEeCCCCccccCccccccccc
Q 002167          587 ECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP-PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL  664 (957)
Q Consensus       587 ~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  664 (957)
                      ..+.. ++|++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+.++++|++|++++|.+.+..|..+..++
T Consensus       370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            44433 666777777766663 44667777778888888888777766 5777788888888888888777777776666


Q ss_pred             cccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEE
Q 002167          665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFL  744 (957)
Q Consensus       665 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (957)
                      +|++|++++|++.+.                         .+|..                                   
T Consensus       449 ~L~~L~l~~n~l~~~-------------------------~~~~~-----------------------------------  468 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDN-------------------------TLSNV-----------------------------------  468 (606)
T ss_dssp             TCCEEECTTCEEGGG-------------------------EECSC-----------------------------------
T ss_pred             CCCEEECCCCcCCCc-------------------------chHHh-----------------------------------
Confidence            666666655554331                         11111                                   


Q ss_pred             EEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcc
Q 002167          745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPT  824 (957)
Q Consensus       745 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~  824 (957)
                               +..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|++|||++|+++ .+|.
T Consensus       469 ---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          469 ---------FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             ---------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             ---------hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence                     011467788888888888888999999999999999999999999999999999999999999999 6787


Q ss_pred             cCcCCC-CCCeEECccCcccccCCCC
Q 002167          825 QLASLN-YLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       825 ~l~~l~-~L~~L~ls~N~l~g~ip~~  849 (957)
                      .+..++ +|++|++++|++.|.+|..
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             hHhhhcccCcEEEccCCCcccCCccH
Confidence            799886 6999999999999988853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-51  Score=488.98  Aligned_cols=537  Identities=21%  Similarity=0.234  Sum_probs=400.9

Q ss_pred             EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167           91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL  170 (957)
Q Consensus        91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L  170 (957)
                      ++.++.++. .+|.  .+  -+++++|+|++|.+++. .|..+ +++++|++|++++|.+.+..|..+.. +++|++|+|
T Consensus        17 ~~c~~~~l~-~iP~--~l--~~~l~~L~Ls~n~i~~~-~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L   88 (606)
T 3t6q_A           17 YNCENLGLN-EIPG--TL--PNSTECLEFSFNVLPTI-QNTTF-SRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVL   88 (606)
T ss_dssp             EECTTSCCS-SCCT--TS--CTTCCEEECTTCCCSEE-CTTTS-TTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred             EECCCCCcc-cCcC--CC--CCcCcEEEccCCccCcC-ChhHh-ccCccceEEECCCCccceeChhhccC-ccccCeeeC
Confidence            455555554 3443  22  24799999999999763 34455 99999999999999999777778887 999999999


Q ss_pred             cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167          171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG  250 (957)
Q Consensus       171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  250 (957)
                      ++|.+.+..|..|+++++|++|++++|.+++..+..+. ++++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CCCcccccChhhhcccccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            99999998899999999999999999999865456665 89999999999999997554555569999999999999996


Q ss_pred             ccchhHhhhccCCc--EEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcc
Q 002167          251 EIPASLGNNITQLA--YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS  328 (957)
Q Consensus       251 ~ip~~l~~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  328 (957)
                      ..|..+.. +++|+  .|++++|.+.+..|..+.. .+|++|++++|.   .++..+..+.+++...+....+.+     
T Consensus       168 ~~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----  237 (606)
T 3t6q_A          168 LSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----  237 (606)
T ss_dssp             ECHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----
T ss_pred             cChhhhhh-hcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhcc-----
Confidence            55666665 99999  9999999999877766654 689999999986   344555555555544443322211     


Q ss_pred             hhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCC
Q 002167          329 IFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQL  408 (957)
Q Consensus       329 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L  408 (957)
                            +...++..                                                      .....+.. .+|
T Consensus       238 ------~~~~~i~~------------------------------------------------------~~~~~l~~-~~L  256 (606)
T 3t6q_A          238 ------MDDEDISP------------------------------------------------------AVFEGLCE-MSV  256 (606)
T ss_dssp             ------SCCCCCCG------------------------------------------------------GGGGGGGG-SEE
T ss_pred             ------ccccccCh------------------------------------------------------hHhchhhc-Cce
Confidence                  11000000                                                      00011111 156


Q ss_pred             CEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccC
Q 002167          409 ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG  488 (957)
Q Consensus       409 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  488 (957)
                      +.|++++|.+++..+..+...  +                                          +|++|++++|.++ 
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l--~------------------------------------------~L~~L~l~~n~l~-  291 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCF--S------------------------------------------GLQELDLTATHLS-  291 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTC--T------------------------------------------TCSEEECTTSCCS-
T ss_pred             eEEEeecCccCccCHHHhccc--c------------------------------------------CCCEEeccCCccC-
Confidence            777777777776555544433  3                                          4444444444444 


Q ss_pred             CCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCC-cCCCCCCccEEEccCCcCCCCC--Ccc
Q 002167          489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQ-TNAKGCKLTYLRLSGNHLEGPL--PPS  564 (957)
Q Consensus       489 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~  564 (957)
                      .+|..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +..
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            44555666667777777777766555544433 3677777777776655544 3777888899999998888765  777


Q ss_pred             ccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCC
Q 002167          565 LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL  642 (957)
Q Consensus       565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  642 (957)
                      +..+++|++|++++|.+.+..|..+.. ++|++|++++|++.+..+. .+..+++|+.|++++|.+++..|..+..+++|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            888999999999999998888887766 8899999999998877655 48889999999999999998889999999999


Q ss_pred             cEEeCCCCccccCc---cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhcccc
Q 002167          643 EVLDVGNNQIDDTF---PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMH  719 (957)
Q Consensus       643 ~~L~ls~n~l~~~~---p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~  719 (957)
                      ++|++++|++.+..   +..+..+++|+                          .|++++|++++..|..+         
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~--------------------------~L~Ls~n~l~~~~~~~~---------  496 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLE--------------------------ILVLSFCDLSSIDQHAF---------  496 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCC--------------------------EEECTTSCCCEECTTTT---------
T ss_pred             CEEECCCCCCCccccccchhhccCCCcc--------------------------EEECCCCccCccChhhh---------
Confidence            99999999987632   23455555444                          45555555554444221         


Q ss_pred             CCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCc
Q 002167          720 GNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP  799 (957)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  799 (957)
                                                         ..++.|+.|||++|++++.+|+.+++++.| .|+|++|++++.+|
T Consensus       497 -----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          497 -----------------------------------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             -----------------------------------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             -----------------------------------ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence                                               114678889999999999999999999999 99999999999999


Q ss_pred             hhhhhccCCCEEECCCCcccccCc
Q 002167          800 SSLRNLTELESLDLSSNKLAGRIP  823 (957)
Q Consensus       800 ~~l~~L~~L~~L~Ls~N~l~g~ip  823 (957)
                      ..++.+++|++|++++|++.+..+
T Consensus       541 ~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          541 SLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999998665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-53  Score=511.55  Aligned_cols=499  Identities=19%  Similarity=0.274  Sum_probs=301.9

Q ss_pred             CHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCccccCCC
Q 002167           29 SHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSW---DGVTCDSATGHVIGLDLSCSWLHGNIPSN  105 (957)
Q Consensus        29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~l~g~~~~~  105 (957)
                      ...|+.||.+|++++..+.-      .+....++...+|..+++||.|   .||+|+.. ++|++|+|+++++.|.+|+ 
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w------~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~-   99 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNW------SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD-   99 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGC------CCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG-
T ss_pred             HHHHHHHHHHHHHHcCCCCc------ccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh-
Confidence            34799999999999876531      1111234566799988999999   99999875 8999999999999999998 


Q ss_pred             CCccCCCCCCeeeCCCCCCC------C-----CCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEcc---
Q 002167          106 SSLFFLPRLRKLNLAFNDFN------G-----SKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS---  171 (957)
Q Consensus       106 ~~l~~l~~L~~L~Ls~n~~~------~-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls---  171 (957)
                       +++.+++|++|+|++|.+.      +     ..+|...   +.+|+ ++++++.+.+.+|..+...+..+..+++.   
T Consensus       100 -~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A          100 -AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             -GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             -HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence             9999999999999999651      1     0234333   45566 77777777777776655322222222222   


Q ss_pred             -----------------CCcCCCCcchhccCCCCCCEEEccCCcCCCC-----------------Cchhhh-hCCCCCcE
Q 002167          172 -----------------INSFIGHIPSSFSNLHQLRHLDLQSNNFVGK-----------------IPASLG-NNITQLAY  216 (957)
Q Consensus       172 -----------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~-~~l~~L~~  216 (957)
                                       .|.+++ +|..++++++|++|+|++|.+++.                 +|..++ .++++|++
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~  253 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD  253 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence                             345555 666666666666666666666653                 555542 24666666


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCC-Ccc-ccchhHhhhc------cCCcEEECcCCcCCccCcc--cccCcCC
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVG-EIPASLGNNI------TQLAYLDLSSNGFSGHIPS--SFSNLQQ  286 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~ip~~l~~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~  286 (957)
                      |++++|.+.+.+|..++++++|++|++++|+ ++| .+|..++. +      ++|++|++++|.++ .+|.  .++++++
T Consensus       254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~  331 (636)
T 4eco_A          254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK  331 (636)
T ss_dssp             EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred             EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence            6666666666666666666666666666665 655 56665554 3      56666666666665 5555  5666666


Q ss_pred             CcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC-CceEecCCCCCcccccchhhhcCCCCcEEEc
Q 002167          287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAKLKNLKVLSL  365 (957)
Q Consensus       287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  365 (957)
                      |++|++++|.+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+.                   
T Consensus       332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-------------------  390 (636)
T 4eco_A          332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-------------------  390 (636)
T ss_dssp             CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-------------------
T ss_pred             CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-------------------
Confidence            6666666666655555 5555556666666655555 44444444444 444444444433                   


Q ss_pred             ccccccccccccCCCccccccccccccccCCCcChhhhcC--CCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcc
Q 002167          366 SNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ--HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF  443 (957)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~  443 (957)
                                                     .+|..+...  ++|++|++++|.+++.+|..+......           
T Consensus       391 -------------------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~-----------  428 (636)
T 4eco_A          391 -------------------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT-----------  428 (636)
T ss_dssp             -------------------------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS-----------
T ss_pred             -------------------------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc-----------
Confidence                                           233333222  255666666666655555443210000           


Q ss_pred             cCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc-ccc-
Q 002167          444 LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNS-  521 (957)
Q Consensus       444 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~-  521 (957)
                                   .             ...++|+.|++++|.++...+..+..+++|++|++++|.++ .+|... ... 
T Consensus       429 -------------~-------------~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~  481 (636)
T 4eco_A          429 -------------P-------------FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN  481 (636)
T ss_dssp             -------------C-------------CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred             -------------c-------------ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence                         0             00135555666666665333333455777888888888777 455432 211 


Q ss_pred             -------ccceeecccccccCcCCCcCC--CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCC
Q 002167          522 -------TLETLDLRMNNFQGSIPQTNA--KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS  592 (957)
Q Consensus       522 -------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  592 (957)
                             +|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+.++++|++|++++|+            
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------  547 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------  547 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------
Confidence                   4455555555444 3444443  44555555555555554 44445555555555554443            


Q ss_pred             cccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccC
Q 002167          593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT  655 (957)
Q Consensus       593 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  655 (957)
                           ++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++...
T Consensus       548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence                 2366778888888888888888888888888 57777665  7888888888876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-50  Score=503.29  Aligned_cols=294  Identities=22%  Similarity=0.209  Sum_probs=248.2

Q ss_pred             cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEEC
Q 002167          521 STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDM  599 (957)
Q Consensus       521 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L  599 (957)
                      .+|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+.++++|++|++++|.+++..|..+.. ++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            47888999999888888888999999999999999999988999999999999999999999888888866 99999999


Q ss_pred             CCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEccccccccc
Q 002167          600 RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGP  679 (957)
Q Consensus       600 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~  679 (957)
                      ++|.+.+..+..|..+++|+.|+|++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++.+.
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENL  416 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSS
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccC
Confidence            99999988888899999999999999999842     337889999999999984 3433   56789999999998664


Q ss_pred             CCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhccc
Q 002167          680 IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTT  759 (957)
Q Consensus       680 ~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  759 (957)
                      .. ......+++|+.|++++|++++..+...+                                           ..+++
T Consensus       417 ~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------~~~~~  452 (844)
T 3j0a_A          417 DI-LYFLLRVPHLQILILNQNRFSSCSGDQTP-------------------------------------------SENPS  452 (844)
T ss_dssp             TT-HHHHTTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------------CSCTT
T ss_pred             ch-hhhhhcCCccceeeCCCCccccccccccc-------------------------------------------ccCCc
Confidence            21 11123688999999999999875442110                                           01467


Q ss_pred             ceEEEcccCccC-----ccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCe
Q 002167          760 FATIDLSSNRFQ-----RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV  834 (957)
Q Consensus       760 L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~  834 (957)
                      |+.|+|++|.++     +..|..|..+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++..|..+.  ++|++
T Consensus       453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~  530 (844)
T 3j0a_A          453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI  530 (844)
T ss_dssp             CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred             cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence            899999999997     45567789999999999999999999999999999999999999999998887776  89999


Q ss_pred             EECccCcccccCCCCCCCCcccCCcccCCcCCCCCCC
Q 002167          835 LNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPL  871 (957)
Q Consensus       835 L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~  871 (957)
                      ||+++|+++|.+|..  |.......+.|||..|.++.
T Consensus       531 L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          531 LDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             EECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999999999999964  44555566789999997754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8e-50  Score=479.98  Aligned_cols=527  Identities=21%  Similarity=0.242  Sum_probs=334.5

Q ss_pred             EEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEE
Q 002167           90 GLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD  169 (957)
Q Consensus        90 ~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  169 (957)
                      .++.++.+++ .+|.  .+  .+++++|+|++|.+.+  +++..|.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus        15 ~~~c~~~~l~-~ip~--~~--~~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~   86 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPD--DI--PSSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLI   86 (606)
T ss_dssp             EEECTTSCCS-SCCT--TS--CTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred             ceEccCCCcc-cCCC--CC--CCCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeE
Confidence            4577777765 4454  23  3799999999999976  44434499999999999999999666667776 99999999


Q ss_pred             ccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCC
Q 002167          170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHF  248 (957)
Q Consensus       170 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l  248 (957)
                      |++|.+++..|..|+++++|++|++++|.+.+..+..+. ++++|++|++++|.+++ .+|..++++++|++|++++|++
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            999999998899999999999999999999865556666 99999999999999986 5799999999999999999999


Q ss_pred             ccccchhHhhhccCCc----EEECcCCcCCccCcccccCcCCCcEEEeccCcCc-ccCCccccccCcCceeeccCCcCCC
Q 002167          249 VGEIPASLGNNITQLA----YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV-GKIPDMFTNLTQLSFLGLAYNELIG  323 (957)
Q Consensus       249 ~~~ip~~l~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~  323 (957)
                      ++..|..+.. +++|+    +|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+
T Consensus       166 ~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          166 QTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             eecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            9766666654 66554    89999999996666555554 8999999999987 4677788999999998887655432


Q ss_pred             CC------Ccchhccc--CCceEec-CCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcccccccccccccc
Q 002167          324 SI------PSSIFELL--NLTEIYL-SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACN  394 (957)
Q Consensus       324 ~~------p~~l~~l~--~L~~L~L-~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  394 (957)
                      ..      +..+..+.  .++.+++ ..+.+.+..+                           .+..+++|+.|++++|.
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~---------------------------~~~~l~~L~~L~l~~~~  296 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV---------------------------KFHCLANVSAMSLAGVS  296 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG---------------------------SCGGGTTCSEEEEESCC
T ss_pred             CCcccccChHHhhhhhhccHhheecccccccccccc---------------------------ccccCCCCCEEEecCcc
Confidence            11      11111111  2333333 3333333322                           23344555555555555


Q ss_pred             CCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCC-CCCCCCCccceeeccCccCCCCCCCCC
Q 002167          395 ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKNLEYLHLDSNSLQGSLPDLP  473 (957)
Q Consensus       395 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~  473 (957)
                      +..+| .+..+++|++|++++|.+ +.+|..    .+++|+.|++++|.... .....                     .
T Consensus       297 ~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~~~~~---------------------l  349 (606)
T 3vq2_A          297 IKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISFKKVA---------------------L  349 (606)
T ss_dssp             CCCCC-CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEECCCCC---------------------C
T ss_pred             chhhh-hccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccchhhcc---------------------C
Confidence            55555 556666677777777766 455532    22444444444331111 00001                     1


Q ss_pred             CCccEEEeccCCccCC--CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEE
Q 002167          474 PHMVSFSISNNSLTGE--IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLR  551 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  551 (957)
                      ++|+.|++++|.+++.  .|..+..+++|++|++++|.+++                        +|..+..+++|++|+
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MSANFMGLEELQHLD  405 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------ECCCCTTCTTCCEEE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc------------------------chhhccCCCCCCeeE
Confidence            3444444444444433  24445555555555555555543                        223344445555555


Q ss_pred             ccCCcCCCCCC-ccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCC-CCccccccCCCccEEEccCCcC
Q 002167          552 LSGNHLEGPLP-PSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSG-SLPQTFAKSCVLVSLNLNGNRL  628 (957)
Q Consensus       552 Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l  628 (957)
                      +++|++.+..| ..+.++++|++|++++|.+++..|..+.. ++|++|++++|.+++ .+|..+..+++|+.|++++|++
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            55555554444 34555555555555555555545544433 555555555555554 2455555555555555555555


Q ss_pred             ccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCC-CceEEEcCCCcCcCCCc
Q 002167          629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP-KLRIMDCSHNQLTGVLP  707 (957)
Q Consensus       629 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~-~L~~Ldls~N~l~g~ip  707 (957)
                      ++..|..+.++++|++|++++|++++..|..+..+++|++|++++|++.. +|..  ...++ +|+.+++++|++.+..+
T Consensus       486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~--~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI--LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC--GGGSCTTCCEEECCSCCCCCSST
T ss_pred             CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh--HhhhcccCcEEEccCCCcccCCc
Confidence            55555555555555666666555555555555555566666666665542 3322  23343 46677777777766555


Q ss_pred             h
Q 002167          708 L  708 (957)
Q Consensus       708 ~  708 (957)
                      .
T Consensus       563 ~  563 (606)
T 3vq2_A          563 H  563 (606)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-50  Score=493.23  Aligned_cols=513  Identities=19%  Similarity=0.262  Sum_probs=285.0

Q ss_pred             CCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCC-----CCC--ccc------------cceEecCCCC
Q 002167           26 ILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKED-----ADC--CSW------------DGVTCDSATG   86 (957)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~   86 (957)
                      ..+..+|+.||++||+++.++                   +|+.+     .+|  |.|            .||.|+. .+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~  323 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NG  323 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TS
T ss_pred             cccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CC
Confidence            345568999999999999543                   46443     255  999            9999987 58


Q ss_pred             cEEEEEcCCCCCccccCCCCCccCCCCCCeeeC-CCCCCCCCCCCchhhcC---CCC-----CcE------EEC-CCCcc
Q 002167           87 HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNL-AFNDFNGSKISSGFTDQ---FPS-----LTL------LDL-CSCNF  150 (957)
Q Consensus        87 ~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~i~~~~~~~---l~~-----L~~------L~L-s~n~l  150 (957)
                      +|++|+|+++++.|.+|+  +++.+++|++|+| ++|.+.+. .+......   +..     ++.      ++. ....+
T Consensus       324 ~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             CEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            999999999999999998  9999999999999 88876554 11110000   000     000      000 00000


Q ss_pred             CccCchhhhh----------cCCCCCEEEccC--CcCCCCcchhccCCCCCCEEEccCCcCCC-----------------
Q 002167          151 TGSIPPSLGN----------NITQLAYLDLSI--NSFIGHIPSSFSNLHQLRHLDLQSNNFVG-----------------  201 (957)
Q Consensus       151 ~~~ip~~l~~----------~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------  201 (957)
                      .+.++..+..          ....++.+.+..  |.+++ +|..|+++++|++|+|++|.+++                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence            0000000000          011122222222  44444 45555555555555555555554                 


Q ss_pred             CCchhh-hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC-Ccc-ccchhHhhhcc-------CCcEEECcCC
Q 002167          202 KIPASL-GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVG-EIPASLGNNIT-------QLAYLDLSSN  271 (957)
Q Consensus       202 ~~p~~l-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~ip~~l~~~l~-------~L~~L~Ls~n  271 (957)
                      .+|..+ +.++++|++|+|++|.+.+.+|..|+++++|++|++++|+ ++| .+|..++. ++       +|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCC
Confidence            255554 2256666666666666666666666666666666666665 665 56655544 43       6666666666


Q ss_pred             cCCccCcc--cccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC-CceEecCCCCCccc
Q 002167          272 GFSGHIPS--SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGS  348 (957)
Q Consensus       272 ~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~  348 (957)
                      .++ .+|.  .++++++|++|++++|.+. .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            666 5665  6666666666666666666 555 5666666666666666666 56666666666 666666666665 2


Q ss_pred             ccchhhhcC--CCCcEEEcccccccccc-cc---cCCCccccccccccccccCCCcChhhh-cCCCCCEEECcCCcCCCC
Q 002167          349 VELYDFAKL--KNLKVLSLSNISLSVST-KL---TANSSFPNLSALDLSACNISEFPDNLR-TQHQLELLDLSENQIGGR  421 (957)
Q Consensus       349 ~~~~~l~~l--~~L~~L~L~~~~~~~~~-~~---~~~~~l~~L~~L~L~~~~l~~lp~~l~-~~~~L~~L~Ls~n~l~~~  421 (957)
                      ++ ..+..+  ++|+.|++++|.+.... ..   ......++|+.|++++|.+..+|..+. .+++|+.|++++|.++ .
T Consensus       634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~  711 (876)
T 4ecn_A          634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S  711 (876)
T ss_dssp             CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred             Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence            22 112222  23555555555432110 00   000123355555555555555555443 4555555555555554 3


Q ss_pred             CChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcccc--CCCC
Q 002167          422 IPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC--NLSS  499 (957)
Q Consensus       422 ~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~  499 (957)
                      +|..++....+                  .+.                  -.++|+.|++++|+++ .+|..+.  .+++
T Consensus       712 ip~~~~~~~~~------------------~l~------------------nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~  754 (876)
T 4ecn_A          712 IPENSLKPKDG------------------NYK------------------NTYLLTTIDLRFNKLT-SLSDDFRATTLPY  754 (876)
T ss_dssp             CCTTSSSCTTS------------------CCT------------------TGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred             cChHHhccccc------------------ccc------------------ccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence            43332111000                  000                  0024455555555555 4455554  5566


Q ss_pred             CCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167          500 IQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN  578 (957)
Q Consensus       500 L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  578 (957)
                      |+.|++++|.+++ +|..+.. .+|+.|+|++|+                  ++++|++.+.+|..+.++++|+.|+|++
T Consensus       755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCC
Confidence            6666666666654 3433322 244444444443                  2345777777777788888888888888


Q ss_pred             CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcC
Q 002167          579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL  628 (957)
Q Consensus       579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  628 (957)
                      |++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|+.
T Consensus       816 N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          816 NDI-RKVDEKLT-PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             SCC-CBCCSCCC-SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCC-CccCHhhc-CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            877 57776654 5777777777777655444444443444455555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-47  Score=456.80  Aligned_cols=275  Identities=19%  Similarity=0.229  Sum_probs=184.7

Q ss_pred             ccEEEeccC-CccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccC
Q 002167          476 MVSFSISNN-SLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG  554 (957)
Q Consensus       476 L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  554 (957)
                      ++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+...+|++|++++|.                      
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~----------------------  315 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCK----------------------  315 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCB----------------------
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCc----------------------
Confidence            344555555 555566677777777777777777776 34443332244444444444                      


Q ss_pred             CcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCC--ccccccCCCccEEEccCCcCccCC
Q 002167          555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL--PQTFAKSCVLVSLNLNGNRLKGPL  632 (957)
Q Consensus       555 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~  632 (957)
                        +. .+|.  ..+++|++|++++|.+.+..+. ...++|++|++++|.+++..  |..+..+++|+.|++++|.+++..
T Consensus       316 --~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          316 --FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             --CS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             --cc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence              43 2222  2344555555555555444433 22255666666666655433  556667777777777777776543


Q ss_pred             CccccCCCCCcEEeCCCCccccCcc-ccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167          633 PPSLVNCQYLEVLDVGNNQIDDTFP-YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL  711 (957)
Q Consensus       633 p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~  711 (957)
                      +. +..+++|++|++++|.+.+..| ..+..+++|++|++++|                          .+++.+|..+ 
T Consensus       390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~-  441 (570)
T 2z63_A          390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--------------------------HTRVAFNGIF-  441 (570)
T ss_dssp             EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS--------------------------CCEECCTTTT-
T ss_pred             cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC--------------------------cccccchhhh-
Confidence            33 7777777777777777766544 33444444444444444                          3333333211 


Q ss_pred             hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccC-ccCcccccccCCCcEEECC
Q 002167          712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQ-RKIPEVVGKLNSLKSLNIS  790 (957)
Q Consensus       712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls  790 (957)
                                                                 ..+++|+.|++++|.++ +.+|..++.+++|+.|+|+
T Consensus       442 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  478 (570)
T 2z63_A          442 -------------------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  478 (570)
T ss_dssp             -------------------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             -------------------------------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence                                                       11466778888888887 5788999999999999999


Q ss_pred             CCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCC
Q 002167          791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP  850 (957)
Q Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  850 (957)
                      +|++++..|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            999999999999999999999999999999999999999999999999999999999754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-46  Score=443.13  Aligned_cols=483  Identities=19%  Similarity=0.216  Sum_probs=268.5

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      ++|++|++++|++++..|..+.. +++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..+. ++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCCCCcEE
Confidence            45566666666655444445544 66666666666666655556666666666666666666644444444 66667777


Q ss_pred             EccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167          218 DLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       218 ~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  296 (957)
                      ++++|.+++ ..|..++++++|++|++++|++.+.+|......+++|++|++++|.+++..|..++.+++|++|+++.|.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            777666664 2455667777777777777764445554322336666666666666666666666666666666666666


Q ss_pred             CcccCCccccccCcCceeeccCCcCCCCC--Cc-chhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167          297 FVGKIPDMFTNLTQLSFLGLAYNELIGSI--PS-SIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS  373 (957)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~  373 (957)
                      +....+..+..+++|++|++++|.+++..  |. ....+++|+.|++++|.+.+...                       
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----------------------  240 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF-----------------------  240 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH-----------------------
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH-----------------------
Confidence            54322222234566666666666554321  00 01112233333333322221100                       


Q ss_pred             ccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCC
Q 002167          374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK  453 (957)
Q Consensus       374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  453 (957)
                                            ..++..+..+++|+.+++++|.+.+.                          ....  
T Consensus       241 ----------------------~~l~~~~~~~~~L~~l~l~~~~~~~~--------------------------~~~~--  270 (549)
T 2z81_A          241 ----------------------NELLKLLRYILELSEVEFDDCTLNGL--------------------------GDFN--  270 (549)
T ss_dssp             ----------------------HHHHGGGGGCTTCCEEEEESCEEECC--------------------------SCCC--
T ss_pred             ----------------------HHHHHHhhhhcccccccccccccccc--------------------------cccc--
Confidence                                  01112223334444444444433211                          0000  


Q ss_pred             ccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccc
Q 002167          454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF  533 (957)
Q Consensus       454 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l  533 (957)
                                                        ......+..+++|+.|++.++.+...    ....            
T Consensus       271 ----------------------------------~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~------------  300 (549)
T 2z81_A          271 ----------------------------------PSESDVVSELGKVETVTIRRLHIPQF----YLFY------------  300 (549)
T ss_dssp             ----------------------------------CCTTTCCCCCTTCCEEEEESCBCSCG----GGSC------------
T ss_pred             ----------------------------------ccchhhhhhhcccccccccccccchh----hhcc------------
Confidence                                              00011233455666666666654321    0000            


Q ss_pred             cCcCCCcCCCCCCccEEEccCCcCCCCCCccc-cCCCCCCeEEcCCCccccccCc---cccC-CcccEEECCCCcCCCCC
Q 002167          534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL-TNCVKLQFLDVGNNNLSGQIPE---CLGN-STLQVLDMRMNNFSGSL  608 (957)
Q Consensus       534 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~---~~~~-~~L~~L~Ls~n~l~~~~  608 (957)
                        .++..+....+|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|.   +++. ++|++|++++|++++..
T Consensus       301 --~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  377 (549)
T 2z81_A          301 --DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ  377 (549)
T ss_dssp             --CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred             --cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence              00111112246677777777765 455544 4677777777777777765532   2322 55666666666555432


Q ss_pred             c--cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCc
Q 002167          609 P--QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTR  686 (957)
Q Consensus       609 p--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  686 (957)
                      +  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++..                               
T Consensus       378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-------------------------------  425 (549)
T 2z81_A          378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-------------------------------  425 (549)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-------------------------------
T ss_pred             cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-------------------------------
Confidence            1  23445555555555555554 3444444444444444444433211                               


Q ss_pred             cCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcc
Q 002167          687 VPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLS  766 (957)
Q Consensus       687 ~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  766 (957)
                                          |..                                              ..+.|+.|||+
T Consensus       426 --------------------~~~----------------------------------------------~~~~L~~L~Ls  439 (549)
T 2z81_A          426 --------------------KTC----------------------------------------------IPQTLEVLDVS  439 (549)
T ss_dssp             --------------------CTT----------------------------------------------SCTTCSEEECC
T ss_pred             --------------------cch----------------------------------------------hcCCceEEECC
Confidence                                100                                              01345667777


Q ss_pred             cCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccC
Q 002167          767 SNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI  846 (957)
Q Consensus       767 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  846 (957)
                      +|++++.+    +.+++|+.|+|++|+++ .+|+ .+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+
T Consensus       440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            77776643    46788999999999998 5676 577899999999999999988888999999999999999999998


Q ss_pred             CCCCCC
Q 002167          847 PGGPQF  852 (957)
Q Consensus       847 p~~~~~  852 (957)
                      |....+
T Consensus       514 ~~~~~l  519 (549)
T 2z81_A          514 PRIDYL  519 (549)
T ss_dssp             HHHHHH
T ss_pred             ccHHHH
Confidence            854333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-45  Score=437.22  Aligned_cols=495  Identities=23%  Similarity=0.262  Sum_probs=250.2

Q ss_pred             CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167          112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH  191 (957)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  191 (957)
                      +++++|+|++|.+++  +++..|..+++|++|++++|++.+..|..+.. +++|++|+|++|.+++..|..|+++++|++
T Consensus        28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            356666666666644  22222255666666666666665333333443 666666666666655555555666666666


Q ss_pred             EEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCC----cEE
Q 002167          192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL----AYL  266 (957)
Q Consensus       192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L----~~L  266 (957)
                      |++++|.+.+..+..+. ++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..+.. +++|    +.|
T Consensus       105 L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L  182 (570)
T 2z63_A          105 LVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSL  182 (570)
T ss_dssp             EECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEE
T ss_pred             ccccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhc
Confidence            66666655522222233 55555555555555554 24555555555555555555555333333333 4444    455


Q ss_pred             ECcCCcCCccCcccccCcCCCcEEEeccCcCcc-cCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCC
Q 002167          267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNF  345 (957)
Q Consensus       267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  345 (957)
                      ++++|.+.+..|..+... +|++|++++|.... .++..+..+++++.+.+....+..        ..+++         
T Consensus       183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~---------  244 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE---------  244 (570)
T ss_dssp             ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE---------
T ss_pred             ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh---------
Confidence            555555554444444333 45555554442211 122223333333333322211110        00000         


Q ss_pred             cccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccc-cC-CCcChhhhcCCCCCEEECcCCcCCCCCC
Q 002167          346 SGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC-NI-SEFPDNLRTQHQLELLDLSENQIGGRIP  423 (957)
Q Consensus       346 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l-~~lp~~l~~~~~L~~L~Ls~n~l~~~~p  423 (957)
                        .++...+..++++                       .++.+++.++ .+ ..+|..+..+++|++|++++|.+. .+|
T Consensus       245 --~~~~~~~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~  298 (570)
T 2z63_A          245 --KFDKSALEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK  298 (570)
T ss_dssp             --ECCTTTTGGGGGS-----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred             --hcchhhhcccccc-----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence              0111111111111                       1223333333 11 334455555666666666666655 345


Q ss_pred             hhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCC-CCCCccEEEeccCCccCCC--CccccCCCCC
Q 002167          424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-LPPHMVSFSISNNSLTGEI--PSSFCNLSSI  500 (957)
Q Consensus       424 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L  500 (957)
                      .++..  . +|+.|++++|.+..++...+++|+.|++++|.+.+..+. ..++|+.|++++|.+++..  |..+..++  
T Consensus       299 ~~~~~--~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~--  373 (570)
T 2z63_A          299 DFSYN--F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT--  373 (570)
T ss_dssp             BCCSC--C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS--
T ss_pred             hhhcc--C-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC--
Confidence            44432  2 555666666655554444444455554444444333321 1344444444444443322  33344444  


Q ss_pred             CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCC-ccccCCCCCCeEEcCCC
Q 002167          501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP-PSLTNCVKLQFLDVGNN  579 (957)
Q Consensus       501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n  579 (957)
                                           +|++|++++|++.+..+. +..+++|++|++++|.+.+..+ ..+.++++|++|++++|
T Consensus       374 ---------------------~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          374 ---------------------SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             ---------------------CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             ---------------------ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence                                 455555555544433332 4555666666666666655444 34556666666666666


Q ss_pred             ccccccCccccC-CcccEEECCCCcCC-CCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167          580 NLSGQIPECLGN-STLQVLDMRMNNFS-GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP  657 (957)
Q Consensus       580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  657 (957)
                      .+.+..|..+.. ++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+.++++|++|++++|++++..|
T Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            666655555544 66666666666665 4566666666666667776666666666666666677777777776666666


Q ss_pred             ccccccccccEEEcccccccccCCC
Q 002167          658 YWLDVLLELQVLILRSNRFWGPIGD  682 (957)
Q Consensus       658 ~~l~~l~~L~~L~L~~n~~~~~~~~  682 (957)
                      ..+..+++|++|++++|++.+..+.
T Consensus       512 ~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          512 GIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             HHhhcccCCcEEEecCCcccCCCcc
Confidence            6666667777777777766655543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-45  Score=440.10  Aligned_cols=357  Identities=20%  Similarity=0.270  Sum_probs=306.0

Q ss_pred             cccCCCcChhhhcCCCCCEEECcCCcCCCC-----------------CChhhh--hhccCcceEEECCCcccCCCCCCCC
Q 002167          392 ACNISEFPDNLRTQHQLELLDLSENQIGGR-----------------IPSWMW--DIGVHTLIELDLSRNFLTSIDHLPW  452 (957)
Q Consensus       392 ~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~  452 (957)
                      .|.++.+|..++.+++|++|++++|.+++.                 +|..+.  ..                       
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-----------------------  248 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-----------------------  248 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-----------------------
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-----------------------
Confidence            456666999999999999999999999874                 554433  22                       


Q ss_pred             CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCc-Ccc-CCCccccc-------ccc
Q 002167          453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS-LSG-QIPQCLGN-------STL  523 (957)
Q Consensus       453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~-------~~L  523 (957)
                                           ++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.       .+|
T Consensus       249 ---------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L  307 (636)
T 4eco_A          249 ---------------------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI  307 (636)
T ss_dssp             ---------------------TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred             ---------------------CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence                                 678888899999999999999999999999999998 888 78877654       699


Q ss_pred             ceeecccccccCcCCC--cCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-Cc-ccEEEC
Q 002167          524 ETLDLRMNNFQGSIPQ--TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-ST-LQVLDM  599 (957)
Q Consensus       524 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~-L~~L~L  599 (957)
                      ++|++++|+++ .+|.  .+..+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.. ++ |++|++
T Consensus       308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred             CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence            99999999999 7888  89999999999999999998899 8999999999999999998 88887766 77 999999


Q ss_pred             CCCcCCCCCccccccCC--CccEEEccCCcCccCCCcccc-------CCCCCcEEeCCCCccccCccccccccccccEEE
Q 002167          600 RMNNFSGSLPQTFAKSC--VLVSLNLNGNRLKGPLPPSLV-------NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLI  670 (957)
Q Consensus       600 s~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~  670 (957)
                      ++|.++ .+|..+..++  +|+.|++++|++++.+|..+.       .+++|++|++++|+++...+..+..+++|++|+
T Consensus       385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~  463 (636)
T 4eco_A          385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN  463 (636)
T ss_dssp             CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred             cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence            999999 7888887755  899999999999999998888       888999999999999965555566799999999


Q ss_pred             cccccccccCCCCCCcc------CCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEE
Q 002167          671 LRSNRFWGPIGDTKTRV------PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFL  744 (957)
Q Consensus       671 L~~n~~~~~~~~~~~~~------~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (957)
                      +++|++. .+|......      .+++|+.|++++|+++ .+|..+..                                
T Consensus       464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------  509 (636)
T 4eco_A          464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------------------  509 (636)
T ss_dssp             CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------
T ss_pred             CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------------------
Confidence            9999998 555443211      1238999999999998 56744210                                


Q ss_pred             EEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEEC------CCCcCCCCCchhhhhccCCCEEECCCCcc
Q 002167          745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNI------SHNNLTGCIPSSLRNLTELESLDLSSNKL  818 (957)
Q Consensus       745 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~L~~L~~L~Ls~N~l  818 (957)
                                ..+++|+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|..++++++|++|+|++|++
T Consensus       510 ----------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          510 ----------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             ----------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             ----------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence                      025789999999999998 8999999999999999      56889999999999999999999999999


Q ss_pred             cccCcccCcCCCCCCeEECccCcccc
Q 002167          819 AGRIPTQLASLNYLSVLNLSNNQLEG  844 (957)
Q Consensus       819 ~g~ip~~l~~l~~L~~L~ls~N~l~g  844 (957)
                       +.+|..+.  ++|++||+++|++..
T Consensus       579 -~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          579 -RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             -CccCHhHh--CcCCEEECcCCCCcc
Confidence             78898876  799999999998774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-43  Score=428.66  Aligned_cols=388  Identities=21%  Similarity=0.258  Sum_probs=228.9

Q ss_pred             CCCCCCCCcccCCCCcccEEeccCCCCcc-----------------ccchhHh--hhccCCcEEECcCCcCCccCccccc
Q 002167          222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVG-----------------EIPASLG--NNITQLAYLDLSSNGFSGHIPSSFS  282 (957)
Q Consensus       222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~ip~~l~--~~l~~L~~L~Ls~n~l~~~~p~~l~  282 (957)
                      |.+++ +|..|+++++|++|+|++|++++                 .+|..++  . +++|++|++++|.+.+.+|..++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc-CCCCCEEECcCCCCCccChHHHh
Confidence            44554 55556666666666666666654                 3666653  4 66777777777766666676677


Q ss_pred             CcCCCcEEEeccCc-Ccc-cCCccccccC-------cCceeeccCCcCCCCCCc--chhcccCCceEecCCCCCcccccc
Q 002167          283 NLQQLLWLNLEYNN-FVG-KIPDMFTNLT-------QLSFLGLAYNELIGSIPS--SIFELLNLTEIYLSFSNFSGSVEL  351 (957)
Q Consensus       283 ~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~  351 (957)
                      ++++|++|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|.  .+..+++|++|++++|.+. .++ 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            77777777777776 665 5665555554       7777777777777 6666  6777777777777777665 332 


Q ss_pred             hhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCC-CCEEECcCCcCCCCCChhhhhhc
Q 002167          352 YDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ-LELLDLSENQIGGRIPSWMWDIG  430 (957)
Q Consensus       352 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~  430 (957)
                       .+..++                         +|+.|++++|.+..+|..+..+++ |+.|++++|.++ .+|..+....
T Consensus       590 -~~~~L~-------------------------~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          590 -AFGTNV-------------------------KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             -CCCTTS-------------------------EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             -hhcCCC-------------------------cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence             333333                         344444444444556666666666 777777777766 5565544333


Q ss_pred             cCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcc-ccCCCCCCEEEcccCc
Q 002167          431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS-FCNLSSIQYLDLSNNS  509 (957)
Q Consensus       431 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  509 (957)
                      .++|+.|++++|.+++..+.....+..+             ..++|+.|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~-------------~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDY-------------KGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTC-------------CCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccc-------------cCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence            3335555555555544321100000000             0135666777777766 34443 3467777777777777


Q ss_pred             CccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCcccc--CCCCCCeEEcCCCccccccCc
Q 002167          510 LSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT--NCVKLQFLDVGNNNLSGQIPE  587 (957)
Q Consensus       510 l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~  587 (957)
                      ++ .+|......               .+....++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|.
T Consensus       709 L~-~ip~~~~~~---------------~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          709 MT-SIPENSLKP---------------KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             CS-CCCTTSSSC---------------TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred             CC-ccChHHhcc---------------ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence            77 455432210               0000111224555555555444 3444443  45555555555555543 344


Q ss_pred             cccC-CcccEEEC------CCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc
Q 002167          588 CLGN-STLQVLDM------RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL  660 (957)
Q Consensus       588 ~~~~-~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l  660 (957)
                      .+.. ++|+.|+|      ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+
T Consensus       771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            3333 44555555      45888888888888899999999999998 67887765  589999999998887766666


Q ss_pred             cccccccEEEcccccc
Q 002167          661 DVLLELQVLILRSNRF  676 (957)
Q Consensus       661 ~~l~~L~~L~L~~n~~  676 (957)
                      .....+..+.|.+|+.
T Consensus       848 ~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          848 CPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             HHHHHTTCCEEECCTT
T ss_pred             cccccchheeecCCCc
Confidence            6555555566655543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=411.81  Aligned_cols=462  Identities=21%  Similarity=0.212  Sum_probs=249.6

Q ss_pred             CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167          115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL  194 (957)
Q Consensus       115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  194 (957)
                      ++||+++|.++.  +|..+ .  ++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|++
T Consensus         3 ~~l~ls~n~l~~--ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VPKDL-S--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSS--CCCSC-C--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCccc--ccccc-c--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            466777777653  56555 2  66777777777766444445554 667777777777666666666666666777776


Q ss_pred             cCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCC--cEEECcCC
Q 002167          195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL--AYLDLSSN  271 (957)
Q Consensus       195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L--~~L~Ls~n  271 (957)
                      ++|+++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|++++   ..+.. +++|  ++|++++|
T Consensus        77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~-l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLP-IAHLNISKVLLVLG  148 (520)
T ss_dssp             CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGG-GTTSCEEEEEEEEC
T ss_pred             CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccc-cccceeeEEEeecc
Confidence            666665 45544   46666666666666654 345566666666666666666553   12222 4444  55555555


Q ss_pred             cC--CccCcccccCcC-CCcEEEeccCcCcccCCc-cccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167          272 GF--SGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG  347 (957)
Q Consensus       272 ~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  347 (957)
                      .+  .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.......                 .+.+
T Consensus       149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~  211 (520)
T 2z7x_B          149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLS  211 (520)
T ss_dssp             TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHH
T ss_pred             cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeec
Confidence            55  444444444433 122233333333332221 22333333333333332000000                 0111


Q ss_pred             cccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhh
Q 002167          348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMW  427 (957)
Q Consensus       348 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  427 (957)
                      .++  .+..+++|+.                                                |++++|.+++..+..+.
T Consensus       212 ~~~--~l~~l~~L~~------------------------------------------------L~l~~~~l~~~~~~~~~  241 (520)
T 2z7x_B          212 ILA--KLQTNPKLSN------------------------------------------------LTLNNIETTWNSFIRIL  241 (520)
T ss_dssp             HHH--GGGGCTTCCE------------------------------------------------EEEEEEEEEHHHHHHHH
T ss_pred             chh--hhccccchhh------------------------------------------------ccccccccCHHHHHHHH
Confidence            111  2223333333                                                33333332221111110


Q ss_pred             hh-ccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc-----cCCCCCC
Q 002167          428 DI-GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF-----CNLSSIQ  501 (957)
Q Consensus       428 ~~-~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~  501 (957)
                      .. .                                          .++|++|++++|.+++.+|..+     ..+++|+
T Consensus       242 ~~~~------------------------------------------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~  279 (520)
T 2z7x_B          242 QLVW------------------------------------------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS  279 (520)
T ss_dssp             HHHH------------------------------------------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred             HHhh------------------------------------------hCcccEEEeecccccCccccchhhcccccCceeE
Confidence            00 0                                          0123333333333333333333     4455555


Q ss_pred             EEEcccCcCccCCCc-cc----cccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEc
Q 002167          502 YLDLSNNSLSGQIPQ-CL----GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV  576 (957)
Q Consensus       502 ~L~L~~n~l~~~~p~-~~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  576 (957)
                      .+++++|.+  .+|. .+    ...+|+.|++++|.+.+...  ...+++|++|++++|++++..|..+..+++|++|++
T Consensus       280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  355 (520)
T 2z7x_B          280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL  355 (520)
T ss_dssp             EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred             eccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence            555555555  3331 11    11245555555555443211  134566777777777777666666777777777777


Q ss_pred             CCCcccc--ccCccccC-CcccEEECCCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCcc
Q 002167          577 GNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI  652 (957)
Q Consensus       577 s~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  652 (957)
                      ++|++++  .+|..+.. ++|++|++++|.+++.+|. .+..+++|+.|++++|++++..|..+.  ++|+.|++++|++
T Consensus       356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI  433 (520)
T ss_dssp             CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred             cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence            7777765  44454544 6777777777777764554 366677777777777777766665554  6777777777777


Q ss_pred             ccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCch
Q 002167          653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL  708 (957)
Q Consensus       653 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~  708 (957)
                      + .+|.++..+++|++|++++|++.+ +|.. ....+++|+.+++++|++++..+.
T Consensus       434 ~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          434 K-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             c-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCcccCCc
Confidence            7 566666677777777777777763 3333 235577888888888888887664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=409.48  Aligned_cols=445  Identities=21%  Similarity=0.230  Sum_probs=283.6

Q ss_pred             cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167          141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS  220 (957)
Q Consensus       141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls  220 (957)
                      ++||+++|+++ .+|..+.   ++|++|++++|.+.+..|..|.++++|++|++++|+++                    
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--------------------   58 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--------------------   58 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--------------------
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccC--------------------
Confidence            34566666665 4555443   45555555555555554455555555555555555554                    


Q ss_pred             CCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCc-cCcccccCcCCCcEEEeccCcCcc
Q 002167          221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIPSSFSNLQQLLWLNLEYNNFVG  299 (957)
Q Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~  299 (957)
                           +..|..|+++++|++|++++|+++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+
T Consensus        59 -----~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           59 -----YLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             -----EEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             -----CcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence                 333444444444455555554444 34443   25555555555555554 345555555555555555555543


Q ss_pred             cCCccccccCcC--ceeeccCCcC--CCCCCcchhccc-CCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccc
Q 002167          300 KIPDMFTNLTQL--SFLGLAYNEL--IGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST  374 (957)
Q Consensus       300 ~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~  374 (957)
                         ..+..+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.+....+..+++|+.+++++|.     
T Consensus       130 ---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-----  201 (520)
T 2z7x_B          130 ---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL-----  201 (520)
T ss_dssp             ---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC-----
T ss_pred             ---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc-----
Confidence               234445555  6666666665  455555554443 222344555555443333333333333333333332     


Q ss_pred             cccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCc
Q 002167          375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKN  454 (957)
Q Consensus       375 ~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  454 (957)
                                          ...-...                +.+.+| .+...                         
T Consensus       202 --------------------~~~~~~~----------------~~~~~~-~l~~l-------------------------  219 (520)
T 2z7x_B          202 --------------------EDNKCSY----------------FLSILA-KLQTN-------------------------  219 (520)
T ss_dssp             --------------------STTTTHH----------------HHHHHH-GGGGC-------------------------
T ss_pred             --------------------cccccce----------------eecchh-hhccc-------------------------
Confidence                                0000000                111111 12111                         


Q ss_pred             cceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc---cCCCCCCEEEcccCcCccCCCccc-----cc-cccce
Q 002167          455 LEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF---CNLSSIQYLDLSNNSLSGQIPQCL-----GN-STLET  525 (957)
Q Consensus       455 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~~-----~~-~~L~~  525 (957)
                                         ++|+.|++++|.+++..+..+   ...++|++|++++|.++|.+|..+     .. ..|+.
T Consensus       220 -------------------~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          220 -------------------PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             -------------------TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             -------------------cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence                               455555665555544322111   124699999999999999998876     33 38999


Q ss_pred             eecccccccCcCC-CcCCCC---CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECC
Q 002167          526 LDLRMNNFQGSIP-QTNAKG---CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMR  600 (957)
Q Consensus       526 L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls  600 (957)
                      +++++|.+  .+| ..+..+   .+|+.|++++|.+....  ....+++|++|++++|++++.+|..++. ++|++|+++
T Consensus       281 l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          281 HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             ccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence            99999998  455 333332   67999999999987543  1268899999999999999988988876 999999999


Q ss_pred             CCcCCC--CCccccccCCCccEEEccCCcCccCCCc-cccCCCCCcEEeCCCCccccCccccccccccccEEEccccccc
Q 002167          601 MNNFSG--SLPQTFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW  677 (957)
Q Consensus       601 ~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~  677 (957)
                      +|++++  .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|++.
T Consensus       357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK  434 (520)
T ss_dssp             SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred             CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence            999997  6678899999999999999999986775 488999999999999999988877665  79999999999987


Q ss_pred             ccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhcc
Q 002167          678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM  717 (957)
Q Consensus       678 ~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l  717 (957)
                       .+|...  ..+++|+.|++++|++++ +|...+..++.+
T Consensus       435 -~ip~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  470 (520)
T 2z7x_B          435 -SIPKQV--VKLEALQELNVASNQLKS-VPDGIFDRLTSL  470 (520)
T ss_dssp             -CCCGGG--GGCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             -ccchhh--hcCCCCCEEECCCCcCCc-cCHHHhccCCcc
Confidence             555544  378999999999999994 665544444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.3e-42  Score=413.59  Aligned_cols=531  Identities=22%  Similarity=0.209  Sum_probs=322.8

Q ss_pred             eeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCch-hhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167          117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP-SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ  195 (957)
Q Consensus       117 L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  195 (957)
                      .+-++..++.  +|+.+   -+++++|||++|+|+ .+|+ ++.. +++|++|+|++|.+++..|.+|.++++|++|+|+
T Consensus        36 ~~c~~~~l~~--vP~~l---p~~~~~LdLs~N~i~-~l~~~~f~~-l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           36 YQCMELNFYK--IPDNL---PFSTKNLDLSFNPLR-HLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             EECTTSCCSS--CCSSS---CTTCCEEECTTSCCC-EECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             EECCCCCcCc--cCCCC---CcCCCEEEeeCCCCC-CCCHHHHhC-CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence            3444444543  67655   357899999999998 5554 5555 9999999999999988778889999999999999


Q ss_pred             CCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCC
Q 002167          196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       196 ~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~  274 (957)
                      +|+++ .+|...+.++++|++|++++|++++..+..|+++++|++|++++|++++ .+|..+.. +++|++|++++|.++
T Consensus       109 ~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          109 GNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred             CCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCcccc
Confidence            99988 5665554589999999999999987777788999999999999998874 34555555 888999999988888


Q ss_pred             ccCcccccCcCCCc----EEEeccCcCcccCCccccccCcCceeeccCCcCCCC-CCcchhcccCCceEecCCCCCcccc
Q 002167          275 GHIPSSFSNLQQLL----WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-IPSSIFELLNLTEIYLSFSNFSGSV  349 (957)
Q Consensus       275 ~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~  349 (957)
                      +..+..+..+.+++    .++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..+......
T Consensus       187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  265 (635)
T 4g8a_A          187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  265 (635)
T ss_dssp             EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             ccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence            87777777665443    56777777765444433 334456666666644321 1222334444444443322211100


Q ss_pred             cchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccC----CCcChhhhcCCCCCEEECcCCcCCCCCChh
Q 002167          350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI----SEFPDNLRTQHQLELLDLSENQIGGRIPSW  425 (957)
Q Consensus       350 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l----~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~  425 (957)
                      ..                    .............+....+..+..    ..++..+....+++.+++.++.+....+  
T Consensus       266 ~l--------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--  323 (635)
T 4g8a_A          266 NL--------------------EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--  323 (635)
T ss_dssp             CC--------------------SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--
T ss_pred             cc--------------------ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--
Confidence            00                    000001111122222222222211    1223334455566666666665543211  


Q ss_pred             hhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEc
Q 002167          426 MWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDL  505 (957)
Q Consensus       426 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  505 (957)
                      +.  ....++.|++.+|.+..+....+..++.+++..|......                       ....+++|+.+++
T Consensus       324 ~~--~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----------------------~~~~l~~L~~L~l  378 (635)
T 4g8a_A          324 FS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----------------------SEVDLPSLEFLDL  378 (635)
T ss_dssp             GG--SCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC-----------------------CCCBCTTCCEEEC
T ss_pred             cc--cchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc-----------------------ccccccccccchh
Confidence            11  1245556666666555555444444444444444333222                       2234555666666


Q ss_pred             ccCcCccC--CCccc-cccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC-CccccCCCCCCeEEcCCCcc
Q 002167          506 SNNSLSGQ--IPQCL-GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL-PPSLTNCVKLQFLDVGNNNL  581 (957)
Q Consensus       506 ~~n~l~~~--~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l  581 (957)
                      ++|.+...  .+... ...+|+.+++..|.... .+..+..+++|+.+++++|...... +..+..+++++.++++.|.+
T Consensus       379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l  457 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT  457 (635)
T ss_dssp             CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred             hccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            66655421  12111 12256666666555543 2334555666666666666554433 23456666777777777777


Q ss_pred             ccccCccccC-CcccEEECCCCcCC-CCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccc
Q 002167          582 SGQIPECLGN-STLQVLDMRMNNFS-GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW  659 (957)
Q Consensus       582 ~~~~p~~~~~-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~  659 (957)
                      .+..+..+.. ++|++|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..
T Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  537 (635)
T 4g8a_A          458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  537 (635)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred             ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence            6666665544 66777777776533 345666777777777777777777666777777777777777777777776777


Q ss_pred             ccccccccEEEcccccccccCCCCCCccCC-CCceEEEcCCCcCcCCCc
Q 002167          660 LDVLLELQVLILRSNRFWGPIGDTKTRVPF-PKLRIMDCSHNQLTGVLP  707 (957)
Q Consensus       660 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l-~~L~~Ldls~N~l~g~ip  707 (957)
                      |..+++|++|+|++|++.+..+...  ..+ ++|+.|++++|+++..-.
T Consensus       538 ~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          538 YKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGG
T ss_pred             HhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCC
Confidence            7777777777777777766665544  233 567788888888776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-42  Score=411.18  Aligned_cols=489  Identities=22%  Similarity=0.243  Sum_probs=309.8

Q ss_pred             CccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCc
Q 002167           73 CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG  152 (957)
Q Consensus        73 ~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~  152 (957)
                      .|.|.|+ |+..          +++++ .+|+  .+  .++|++|+|++|.+++. .|..+ ..+++|++|++++|++.+
T Consensus         3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~-~~l~~L~~L~Ls~n~i~~   64 (549)
T 2z81_A            3 SCDASGV-CDGR----------SRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDL-RACANLQVLILKSSRINT   64 (549)
T ss_dssp             EECTTSE-EECT----------TSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTT-SSCTTCCEEECTTSCCCE
T ss_pred             cCCCCce-EECC----------CCccc-cccc--cC--CCCccEEECcCCccCcc-Chhhh-hcCCcccEEECCCCCcCc
Confidence            4999998 8543          33443 3444  23  26888888888888653 34444 888888888888888886


Q ss_pred             cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC-CCchhhhhCCCCCcEEEccCCCCCCCCC-c
Q 002167          153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVG-KIPASLGNNITQLAYLDLSSNSFSGHIP-S  230 (957)
Q Consensus       153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~~l~~L~~L~Ls~n~l~~~~p-~  230 (957)
                      ..|..+.. +++|++|+|++|.+.+..|..|+++++|++|++++|.+.+ ..|..+. ++++|++|++++|.+.+.+| .
T Consensus        65 ~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~  142 (549)
T 2z81_A           65 IEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRI  142 (549)
T ss_dssp             ECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTT
T ss_pred             cChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHh
Confidence            55566665 8888888888888888777778888888888888888875 3455555 78888888888888444444 5


Q ss_pred             ccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCccc-ccCcCCCcEEEeccCcCcccC---Ccccc
Q 002167          231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNFVGKI---PDMFT  306 (957)
Q Consensus       231 ~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~---p~~l~  306 (957)
                      .++++++|++|++++|++++.+|..+.. +++|++|++++|.+.. +|.. +..+++|++|++++|.+.+..   .....
T Consensus       143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  220 (549)
T 2z81_A          143 DFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDE  220 (549)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred             hhhcccccCeeeccCCcccccChhhhhc-cccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhh
Confidence            7888888888888888888777877776 8888888888888763 3333 456888888888888887642   12234


Q ss_pred             ccCcCceeeccCCcCCCCCCc----chhcccCCceEecCCCCCcccccc-----hhhhcCCCCcEEEccccccccccccc
Q 002167          307 NLTQLSFLGLAYNELIGSIPS----SIFELLNLTEIYLSFSNFSGSVEL-----YDFAKLKNLKVLSLSNISLSVSTKLT  377 (957)
Q Consensus       307 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~~  377 (957)
                      .+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+....     ..+..+++|+.|++.++.+.......
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~  300 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY  300 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence            577888888888887654333    334567788888888776543211     22345566666666665532211110


Q ss_pred             CC----CccccccccccccccCCCcChhh-hcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167          378 AN----SSFPNLSALDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW  452 (957)
Q Consensus       378 ~~----~~l~~L~~L~L~~~~l~~lp~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  452 (957)
                      ..    ...++|+.|++++|.++.+|..+ ..+++|++|++++|++++.+|..                           
T Consensus       301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------  353 (549)
T 2z81_A          301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------------  353 (549)
T ss_dssp             CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------------
T ss_pred             cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc---------------------------
Confidence            00    01233444444444444444433 23444444444444443322211                           


Q ss_pred             CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCC--ccc-cccccceeecc
Q 002167          453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP--QCL-GNSTLETLDLR  529 (957)
Q Consensus       453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~-~~~~L~~L~L~  529 (957)
                                                            +..+..+++|++|++++|.+++..+  ..+ ...+|++|+++
T Consensus       354 --------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          354 --------------------------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             --------------------------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             --------------------------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence                                                  0112333344444444444432111  111 11244444444


Q ss_pred             cccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCc
Q 002167          530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP  609 (957)
Q Consensus       530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p  609 (957)
                      +|+++ .+|..+..+++|++|++++|++++ +|..+  .++|++|++++|++++.++   ..++|++|++++|+++ .+|
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~---~l~~L~~L~Ls~N~l~-~ip  467 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLK-TLP  467 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCC
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc---cCChhcEEECCCCccC-cCC
Confidence            44444 344445555666666666666653 22222  2467777777777765331   2367888888888887 555


Q ss_pred             cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167          610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP  657 (957)
Q Consensus       610 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  657 (957)
                      . ...+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            5 4567888888888888888878888888899999999998887766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-41  Score=407.78  Aligned_cols=536  Identities=22%  Similarity=0.224  Sum_probs=309.5

Q ss_pred             EEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC
Q 002167          168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH  247 (957)
Q Consensus       168 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  247 (957)
                      .+-++-.++ .+|..+.  +++++|+|++|++++..+..+. ++++|++|+|++|++++..|.+|.++++|++|+|++|+
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            343443444 4554332  4678888888877733333444 77888888888888776666777778888888888887


Q ss_pred             CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcc-cCCccccccCcCceeeccCCcCCCCCC
Q 002167          248 FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYNELIGSIP  326 (957)
Q Consensus       248 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p  326 (957)
                      ++ .+|...+.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+
T Consensus       112 l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          112 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            77 5555544447778888887777776666667777777777777777764 346667777777777777777776666


Q ss_pred             cchhcccCCc----eEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhh
Q 002167          327 SSIFELLNLT----EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNL  402 (957)
Q Consensus       327 ~~l~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l  402 (957)
                      ..+..+.+++    .++++.|.+....+ ..+ ....++.+++.++....                       ...+..+
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~-~~~~~~~l~l~~n~~~~-----------------------~~~~~~~  245 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAF-KEIRLHKLTLRNNFDSL-----------------------NVMKTCI  245 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECT-TTT-TTCEEEEEEEESCCSSH-----------------------HHHHHHH
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCc-ccc-cchhhhhhhhhcccccc-----------------------cccchhh
Confidence            6665554433    34444444432111 100 11112222222221000                       0111223


Q ss_pred             hcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEec
Q 002167          403 RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS  482 (957)
Q Consensus       403 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  482 (957)
                      ..+..++...+..+.....                    ..+.......+..+                  ..+....+.
T Consensus       246 ~~l~~l~~~~l~~~~~~~~--------------------~~l~~~~~~~~~~~------------------~~l~~~~l~  287 (635)
T 4g8a_A          246 QGLAGLEVHRLVLGEFRNE--------------------GNLEKFDKSALEGL------------------CNLTIEEFR  287 (635)
T ss_dssp             HTTTTCEEEEEEEECCTTS--------------------CCCSCCCTTTTGGG------------------GGSEEEEEE
T ss_pred             cCCcccccccccccccccc--------------------cccccccccccccc------------------cchhhhhhh
Confidence            3333333333322111100                    00000000111110                  111122221


Q ss_pred             cCCc---cCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCC
Q 002167          483 NNSL---TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG  559 (957)
Q Consensus       483 ~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  559 (957)
                      .+..   ....+..+..+.+++.+++.++.+.+. +.......++.|++.+|++.+..+.   .+..|+.+++.+|.+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~  363 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN  363 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence            1111   111223344455666666666665532 2222223556666666555433322   23455666666665543


Q ss_pred             CCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC-cc
Q 002167          560 PLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP-PS  635 (957)
Q Consensus       560 ~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~  635 (957)
                      ..  ....+++|+.|++++|.+..  ..+..... .+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..
T Consensus       364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence            22  23355666666666666542  22222222 455666666555542 23345555566666666555544433 34


Q ss_pred             ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhh
Q 002167          636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESF  714 (957)
Q Consensus       636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l  714 (957)
                      +..+++++.+++++|.+.+..+..+..++                          .++.+++++|++.+. +|..     
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--------------------------~L~~L~Ls~N~~~~~~~~~~-----  489 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLS--------------------------SLEVLKMAGNSFQENFLPDI-----  489 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCT--------------------------TCCEEECTTCEEGGGEECSC-----
T ss_pred             cccccccccccccccccccccccccccch--------------------------hhhhhhhhhcccccccCchh-----
Confidence            55555566666666655555554444444                          445555555543322 2211     


Q ss_pred             hccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcC
Q 002167          715 KAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL  794 (957)
Q Consensus       715 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  794 (957)
                                                             +..+++|+.|||++|++++.+|..|+++++|++|+|++|++
T Consensus       490 ---------------------------------------~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l  530 (635)
T 4g8a_A          490 ---------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  530 (635)
T ss_dssp             ---------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ---------------------------------------hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence                                                   11257889999999999999999999999999999999999


Q ss_pred             CCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCCC
Q 002167          795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip~  848 (957)
                      ++..|..|+++++|++|||++|++++.+|..+..+ ++|++|++++|+++|.|..
T Consensus       531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99999999999999999999999999999999998 7899999999999998864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.6e-40  Score=388.17  Aligned_cols=467  Identities=21%  Similarity=0.227  Sum_probs=253.1

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      ...+++++++|+++ .+|..+.   ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. ++++|++|
T Consensus        31 ~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L  105 (562)
T 3a79_B           31 ELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYL  105 (562)
T ss_dssp             --CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEE
T ss_pred             CCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEE
Confidence            33456666666665 4555442   4566666666665555555555555555555555555543344443 55555555


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  296 (957)
                      ++++|.++ .+|..  .+++|++|++++|++++ .+|..+.. +++|++|++++|.+.+.   .+..+++|         
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L---------  169 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHL---------  169 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTS---------
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhc---------
Confidence            55555554 33333  45555555555555542 12233333 45555555555544431   22233333         


Q ss_pred             CcccCCccccccCcCceeeccCCcC--CCCCCcchhccc-CCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167          297 FVGKIPDMFTNLTQLSFLGLAYNEL--IGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS  373 (957)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~  373 (957)
                                   +|++|++++|.+  ++..|..+..+. ..-.++++.|.+.+.+....+..+++|+.+++++|.....
T Consensus       170 -------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          170 -------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             -------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred             -------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence                         114444444444  444444443322 0112344444444333333333444444444444321000


Q ss_pred             ccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh-hccCcceEEECCCcccCCCCCCCC
Q 002167          374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD-IGVHTLIELDLSRNFLTSIDHLPW  452 (957)
Q Consensus       374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~  452 (957)
                                          .+...+..+..++.|+.++++++.+.+.....+.. ..                      
T Consensus       237 --------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~----------------------  274 (562)
T 3a79_B          237 --------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW----------------------  274 (562)
T ss_dssp             --------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT----------------------
T ss_pred             --------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh----------------------
Confidence                                00111223445555555655555444221111100 00                      


Q ss_pred             CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc-----cCCCCCCEEEcccCcCccCCCcc-----ccccc
Q 002167          453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF-----CNLSSIQYLDLSNNSLSGQIPQC-----LGNST  522 (957)
Q Consensus       453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~~-----~~~~~  522 (957)
                                          .++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+|..     +...+
T Consensus       275 --------------------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          275 --------------------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN  332 (562)
T ss_dssp             --------------------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred             --------------------cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence                                0234444444444444444444     4444455555555554  33321     11235


Q ss_pred             cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEEC
Q 002167          523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDM  599 (957)
Q Consensus       523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~L  599 (957)
                      |++|++++|.+.....  ...+++|++|++++|++++..|..+.++++|++|++++|++++  .+|..+.. ++|++|++
T Consensus       333 L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          333 IKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             ceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence            6677777766643221  1456777888888888777777777778888888888887775  33444544 77888888


Q ss_pred             CCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccc
Q 002167          600 RMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWG  678 (957)
Q Consensus       600 s~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~  678 (957)
                      ++|.+++.+|. .+..+++|+.|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++.+
T Consensus       411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence            88888774544 477778888888888888776665554  67888888888877 456666688888888888888774


Q ss_pred             cCCCCCCccCCCCceEEEcCCCcCcCCCchH
Q 002167          679 PIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW  709 (957)
Q Consensus       679 ~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~  709 (957)
                       +|.. ....+++|+.+++++|++.+..|..
T Consensus       488 -l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          488 -VPDG-VFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             -CCTT-STTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             -CCHH-HHhcCCCCCEEEecCCCcCCCcchH
Confidence             4433 2356788899999999998877753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.9e-40  Score=388.03  Aligned_cols=196  Identities=20%  Similarity=0.249  Sum_probs=156.5

Q ss_pred             CCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCC
Q 002167          111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLR  190 (957)
Q Consensus       111 l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  190 (957)
                      +...+++++++|.+++  +|..+   .++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|.++++|+
T Consensus        30 ~~~~~~l~ls~~~L~~--ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           30 NELESMVDYSNRNLTH--VPKDL---PPRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             ---CCEEECTTSCCCS--CCTTS---CTTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cCCCcEEEcCCCCCcc--CCCCC---CCCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            4455899999999975  78766   389999999999999555567776 99999999999999988899999999999


Q ss_pred             EEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCC-CCcccCCCCcccEEeccCCCCccccchhHhhhccCC--cEEE
Q 002167          191 HLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH-IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL--AYLD  267 (957)
Q Consensus       191 ~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L--~~L~  267 (957)
                      +|++++|.++ .+|..   .+++|++|++++|.+++. .|..|+++++|++|++++|++++.   .+.. +++|  ++|+
T Consensus       104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-l~~L~L~~L~  175 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP-VAHLHLSCIL  175 (562)
T ss_dssp             EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG-GTTSCEEEEE
T ss_pred             EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh-hhhceeeEEE
Confidence            9999999998 77876   799999999999999873 468999999999999999999852   2332 5666  9999


Q ss_pred             CcCCcC--CccCcccccCcC-CCcEEEeccCcCcccCCc-cccccCcCceeeccCCc
Q 002167          268 LSSNGF--SGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNE  320 (957)
Q Consensus       268 Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~  320 (957)
                      +++|.+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred             eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence            999999  888888877764 122456677776654443 34456666667666664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.7e-40  Score=360.94  Aligned_cols=293  Identities=32%  Similarity=0.515  Sum_probs=237.3

Q ss_pred             CCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCcc--
Q 002167           27 LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCS--WDGVTCDSAT--GHVIGLDLSCSWLHG--  100 (957)
Q Consensus        27 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~l~g--  100 (957)
                      .|.++|++||++||+++.++.               .+++|..+++||.  |.||.|+..+  ++|++|+|+++.+.|  
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~---------------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~   66 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc---------------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCc
Confidence            599999999999999996542               5789988889998  9999998655  799999999999998  


Q ss_pred             ccCCCCCccCCCCCCeeeCCC-CCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc
Q 002167          101 NIPSNSSLFFLPRLRKLNLAF-NDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI  179 (957)
Q Consensus       101 ~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~  179 (957)
                      .+++  .+..+++|++|++++ |.+.+. +|..+ +.+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+
T Consensus        67 ~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~  141 (313)
T 1ogq_A           67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGG-GGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCC
T ss_pred             ccCh--hHhCCCCCCeeeCCCCCccccc-CChhH-hcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcC
Confidence            7776  788888888888884 777654 67666 78888888888888888788887776 888888888888888788


Q ss_pred             chhccCCCCCCEEEccCCcCCCCCchhhhhCCC-CCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhh
Q 002167          180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT-QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN  258 (957)
Q Consensus       180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~  258 (957)
                      |..+.++++|++|++++|.+++.+|..++ .++ +|++|++++|.+++.+|..++.++ |++|++++|++++.+|..+..
T Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          142 PPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred             ChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence            88888888888888888888777887777 666 788888888888877787777776 888888888887666666655


Q ss_pred             hccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceE
Q 002167          259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI  338 (957)
Q Consensus       259 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  338 (957)
                       +++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+
T Consensus       220 -l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          220 -DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             -TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             -CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence             78888888888888765554 677788888888888887777888888888888888888887777765 677777777


Q ss_pred             ecCCCC
Q 002167          339 YLSFSN  344 (957)
Q Consensus       339 ~L~~n~  344 (957)
                      ++++|.
T Consensus       297 ~l~~N~  302 (313)
T 1ogq_A          297 AYANNK  302 (313)
T ss_dssp             GTCSSS
T ss_pred             HhcCCC
Confidence            777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-39  Score=373.23  Aligned_cols=284  Identities=29%  Similarity=0.351  Sum_probs=170.2

Q ss_pred             CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEcc
Q 002167          474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS  553 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  553 (957)
                      ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|...  .+|++|++++|++++ +| .+..+++|++|+++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            567777777777775 56 58888889999999998885 55443  378888888888776 44 57777888888888


Q ss_pred             CCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC
Q 002167          554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP  633 (957)
Q Consensus       554 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  633 (957)
                      +|++++ +|...   ++|++|++++|.++ .+|.....++|++|++++|++++ +|..   .++|+.|++++|++++ +|
T Consensus       204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~  273 (454)
T 1jl5_A          204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LP  273 (454)
T ss_dssp             SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cC
Confidence            887775 33322   47778888888777 56653333778888888877775 3432   3677778888877775 44


Q ss_pred             ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhh
Q 002167          634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES  713 (957)
Q Consensus       634 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~  713 (957)
                      ..   .++|++|++++|++++. |..   .++|++|++++|++.+. +.     ..++|+.|++++|++++ +|..    
T Consensus       274 ~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~-----~~~~L~~L~Ls~N~l~~-lp~~----  335 (454)
T 1jl5_A          274 EL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD-----LPPSLEELNVSNNKLIE-LPAL----  335 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC-----CCTTCCEEECCSSCCSC-CCCC----
T ss_pred             cc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC-----CcCcCCEEECCCCcccc-cccc----
Confidence            43   36777788887777762 111   15677777777776552 11     11467777777777765 4421    


Q ss_pred             hhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCc
Q 002167          714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN  793 (957)
Q Consensus       714 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  793 (957)
                                                                 +++|+.|++++|++++ +|.   .+++|+.|+|++|+
T Consensus       336 -------------------------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          336 -------------------------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence                                                       2456777777777774 555   36777777777777


Q ss_pred             CCC--CCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccc--cCCCCC
Q 002167          794 LTG--CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG--PIPGGP  850 (957)
Q Consensus       794 l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~~  850 (957)
                      +++  .+|.+++.+        +.|++.|.+|..   +++|++||+++|+++|  .||...
T Consensus       369 l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          369 LREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             CSSCCCCCTTCCEE--------ECCC-----------------------------------
T ss_pred             CCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhhH
Confidence            777  666655433        346666666653   3678899999999988  788653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.6e-38  Score=360.47  Aligned_cols=372  Identities=25%  Similarity=0.324  Sum_probs=255.2

Q ss_pred             cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhh-----------ccCcceEEECCCcccCCCCCC
Q 002167          382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI-----------GVHTLIELDLSRNFLTSIDHL  450 (957)
Q Consensus       382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----------~~~~L~~L~Ls~n~l~~~~~~  450 (957)
                      ..+|++|++++|.++.+|+.++.+++|++|++++|.+.+.+|..++..           ....+++|++++|.+++++..
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            456777777777777788777888888888888887777777665432           113458889999988887663


Q ss_pred             CCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeeccc
Q 002167          451 PWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRM  530 (957)
Q Consensus       451 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~  530 (957)
                       .++|++|++++|.+++ +|..+++|+.|++++|.+++. |..   .++|++|++++|.+++ +|......+|++|++++
T Consensus        90 -~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           90 -PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN  162 (454)
T ss_dssp             -CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred             -cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence             4788888998888887 677778899999999888753 221   2688999999998885 67544445899999999


Q ss_pred             ccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCcc
Q 002167          531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQ  610 (957)
Q Consensus       531 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~  610 (957)
                      |++++ +|...   .+|++|++++|++++ +| .+.++++|++|++++|++++ +|...  ++|++|++++|.++ .+|.
T Consensus       163 N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp~  232 (454)
T 1jl5_A          163 NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELPE  232 (454)
T ss_dssp             SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCCC
T ss_pred             CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-cccc
Confidence            98886 44433   588999999998886 45 58888999999999998875 55432  57889999999888 5664


Q ss_pred             ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCC
Q 002167          611 TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP  690 (957)
Q Consensus       611 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~  690 (957)
                       +..+++|++|++++|++++ +|..   .++|+.|++++|++++ +|..   .++|++|++++|++.+.. .     ..+
T Consensus       233 -~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-----~~~  297 (454)
T 1jl5_A          233 -LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-----LPP  297 (454)
T ss_dssp             -CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C-----CCT
T ss_pred             -cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C-----cCC
Confidence             8888889999999998885 4543   3788889999988886 4443   378888888888877621 1     125


Q ss_pred             CceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCcc
Q 002167          691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRF  770 (957)
Q Consensus       691 ~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  770 (957)
                      +|+.|++++|++++. |.                                               ...+|+.|++++|++
T Consensus       298 ~L~~L~l~~N~l~~i-~~-----------------------------------------------~~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          298 NLYYLNASSNEIRSL-CD-----------------------------------------------LPPSLEELNVSNNKL  329 (454)
T ss_dssp             TCCEEECCSSCCSEE-CC-----------------------------------------------CCTTCCEEECCSSCC
T ss_pred             cCCEEECcCCcCCcc-cC-----------------------------------------------CcCcCCEEECCCCcc
Confidence            788888888888751 10                                               024678899999999


Q ss_pred             CccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccc--cCcccCcCCCCCCeEECccCcccccCCC
Q 002167          771 QRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG--RIPTQLASLNYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       771 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~ls~N~l~g~ip~  848 (957)
                      ++ +|..   +++|+.|++++|++++ +|.   .+++|++|++++|++++  .+|.++..        +++|++.|.+|.
T Consensus       330 ~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~  393 (454)
T 1jl5_A          330 IE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE  393 (454)
T ss_dssp             SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------
T ss_pred             cc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc
Confidence            87 6654   5788999999999984 666   47889999999999998  77776543        346888888886


Q ss_pred             C
Q 002167          849 G  849 (957)
Q Consensus       849 ~  849 (957)
                      .
T Consensus       394 ~  394 (454)
T 1jl5_A          394 L  394 (454)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.4e-38  Score=361.18  Aligned_cols=379  Identities=17%  Similarity=0.197  Sum_probs=237.9

Q ss_pred             ccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCC-CCCCCCCccceeeccCccC
Q 002167          387 ALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKNLEYLHLDSNSL  465 (957)
Q Consensus       387 ~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~L~~L~l~~n~l  465 (957)
                      .++.+++.++.+|.   -.++|++|++++|.+++..|..+...  ++|++|++++|.+.. +....+..           
T Consensus        14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~-----------   77 (455)
T 3v47_A           14 NAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRL--QDLQFLKVEQQTPGLVIRNNTFRG-----------   77 (455)
T ss_dssp             EEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSC--TTCCEEECCCCSTTCEECTTTTTT-----------
T ss_pred             ccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccC--ccccEEECcCCcccceECcccccc-----------
Confidence            34555556666665   22567777777777766555555433  444444444443321 11111111           


Q ss_pred             CCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCC
Q 002167          466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC  545 (957)
Q Consensus       466 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  545 (957)
                             .++|++|++++|.+++..|..|..+++|++|++++|.+++.++..                     ..+..++
T Consensus        78 -------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~~l~  129 (455)
T 3v47_A           78 -------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------------NFFKPLT  129 (455)
T ss_dssp             -------CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------------STTTTCT
T ss_pred             -------cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---------------------ccccCcc
Confidence                   134444444444444444555555555555555555544322221                     1244455


Q ss_pred             CccEEEccCCcCCCCCCcc-ccCCCCCCeEEcCCCccccccCccccC---CcccEEECCCCcCCCCCccc--------cc
Q 002167          546 KLTYLRLSGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPECLGN---STLQVLDMRMNNFSGSLPQT--------FA  613 (957)
Q Consensus       546 ~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~Ls~n~l~~~~p~~--------~~  613 (957)
                      +|++|++++|++++..|.. +.++++|++|++++|.+++..|..+..   .+|+.|++++|.+.+..+..        +.
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence            5555555555555554443 555555555555555555555544432   45555555555555433322        12


Q ss_pred             cCCCccEEEccCCcCccCCCccccCC---CCCcEEeCCCCcccc----------Cccccccc--cccccEEEcccccccc
Q 002167          614 KSCVLVSLNLNGNRLKGPLPPSLVNC---QYLEVLDVGNNQIDD----------TFPYWLDV--LLELQVLILRSNRFWG  678 (957)
Q Consensus       614 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~ls~n~l~~----------~~p~~l~~--l~~L~~L~L~~n~~~~  678 (957)
                      .+++|++|++++|++++..|..+...   ++|+.|++++|...+          ..+..+..  .++|++|++++|.+.+
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence            34556666666665555554444332   555666665554332          22222332  2578888888888877


Q ss_pred             cCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcc
Q 002167          679 PIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILT  758 (957)
Q Consensus       679 ~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  758 (957)
                      .++...  ..+++|+.|++++|++++..|..+                                            ..++
T Consensus       290 ~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------------------~~l~  323 (455)
T 3v47_A          290 LLKSVF--SHFTDLEQLTLAQNEINKIDDNAF--------------------------------------------WGLT  323 (455)
T ss_dssp             ECTTTT--TTCTTCCEEECTTSCCCEECTTTT--------------------------------------------TTCT
T ss_pred             cchhhc--ccCCCCCEEECCCCcccccChhHh--------------------------------------------cCcc
Confidence            666554  557788888888888887666331                                            1257


Q ss_pred             cceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECc
Q 002167          759 TFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS  838 (957)
Q Consensus       759 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls  838 (957)
                      +|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..+..+..+++|++|+++
T Consensus       324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence            89999999999999999999999999999999999999999999999999999999999998877888999999999999


Q ss_pred             cCcccccCCCCCCCCcc
Q 002167          839 NNQLEGPIPGGPQFNTF  855 (957)
Q Consensus       839 ~N~l~g~ip~~~~~~~~  855 (957)
                      +|+++|.+|...++..|
T Consensus       404 ~N~l~~~~~~~~~l~~~  420 (455)
T 3v47_A          404 TNPWDCSCPRIDYLSRW  420 (455)
T ss_dssp             SSCBCCCTTTTHHHHHH
T ss_pred             CCCcccCCCcchHHHHH
Confidence            99999999965544334

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.1e-37  Score=355.01  Aligned_cols=176  Identities=24%  Similarity=0.313  Sum_probs=120.5

Q ss_pred             cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167          141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS  220 (957)
Q Consensus       141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls  220 (957)
                      +.++.+++.++ .+|. +   .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45666777766 6776 2   36788888888888777777788888888888888877666655444478888888888


Q ss_pred             CCCCCCCCCcccCCCCcccEEeccCCCCccccchh--HhhhccCCcEEECcCCcCCccCccc-ccCcCCCcEEEeccCcC
Q 002167          221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS--LGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  297 (957)
                      +|.+++..|..|+++++|++|++++|++++.++..  +.. +++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            88887777777888888888888888877554443  433 677777777777776655554 56666666666666666


Q ss_pred             cccCCcccccc--CcCceeeccCCcCC
Q 002167          298 VGKIPDMFTNL--TQLSFLGLAYNELI  322 (957)
Q Consensus       298 ~~~~p~~l~~l--~~L~~L~L~~n~l~  322 (957)
                      .+..+..+..+  .+|+.|++++|.+.
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~  193 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQ  193 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred             cccChhhhhccccccccccccccCccc
Confidence            66555555444  34555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=339.06  Aligned_cols=329  Identities=20%  Similarity=0.210  Sum_probs=240.8

Q ss_pred             CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167          473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL  552 (957)
Q Consensus       473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  552 (957)
                      ++.++.|++++|.+++..+..|.++++|++|++++|.+++.                       .|..+..+++|++|+|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------------~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-----------------------EPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------------------CTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----------------------ChhhhhCCccCCEEEC
Confidence            44555666666666655555666666666666666655544                       3444555566666666


Q ss_pred             cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167          553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP  631 (957)
Q Consensus       553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  631 (957)
                      ++|++++..+..|.++++|++|++++|.+.+..|..+.. ++|++|++++|.+++..+..|..+++|+.|++++|++++.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            666666555555666677777777777766666655554 6677777777777766666777777777777777777765


Q ss_pred             CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167          632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL  711 (957)
Q Consensus       632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~  711 (957)
                      .+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.++...  ....+|+.|++++|++++ +|...+
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~-~~~~~~  244 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTA-VPYLAV  244 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCS-CCHHHH
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccc-cCHHHh
Confidence            55667777777777777777777766777777778888888777766666544  234488999999998875 443322


Q ss_pred             hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167          712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH  791 (957)
Q Consensus       712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  791 (957)
                                                                 ..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus       245 -------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          245 -------------------------------------------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             -------------------------------------------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred             -------------------------------------------cCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence                                                       1257899999999999999899999999999999999


Q ss_pred             CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167          792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP  870 (957)
Q Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~  870 (957)
                      |++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.++..+.+.......+.++...|..|
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            9999999999999999999999999999988888999999999999999999987754333222334566777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.9e-34  Score=330.74  Aligned_cols=355  Identities=19%  Similarity=0.172  Sum_probs=223.0

Q ss_pred             hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEe
Q 002167          402 LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSI  481 (957)
Q Consensus       402 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  481 (957)
                      +..+++|++|++++|.+++. | .+.  .+++|++|++++|.+++++...+++|++|++++|.+++......++|++|++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L  113 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIE--KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC  113 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGG--GCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhc--ccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence            44455555555555555532 3 222  2255555555555555544334444444444444444321122355566666


Q ss_pred             ccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC
Q 002167          482 SNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL  561 (957)
Q Consensus       482 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  561 (957)
                      ++|.+++. |  +..+++|++|++++|.+++. + .....+|++|++++|+..+.+  .+..+++|++|++++|++++ +
T Consensus       114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l  185 (457)
T 3bz5_A          114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L  185 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred             CCCcCCee-c--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence            66666542 2  55666666666666666652 2 222336666666666544444  35556666667776666665 2


Q ss_pred             CccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCC
Q 002167          562 PPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQ  640 (957)
Q Consensus       562 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  640 (957)
                      |  +..+++|+.|++++|++++. +  ++. ++|++|++++|++++ +|  +..+++|+.|++++|++++..   +..++
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~  254 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLS  254 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred             c--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCC
Confidence            3  56666666777766666643 1  322 666666666666665 34  566666677777776666542   34455


Q ss_pred             CCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccC
Q 002167          641 YLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG  720 (957)
Q Consensus       641 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~  720 (957)
                      +|+.|++++|              +|+.|++++|++.+.+|.    ..+++|+.||+++|.+.|.+|... ..++.+.  
T Consensus       255 ~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~-~~L~~L~--  313 (457)
T 3bz5_A          255 KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQA-AGITELD--  313 (457)
T ss_dssp             TCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTT-CCCSCCC--
T ss_pred             CCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCC-CcceEec--
Confidence            6666665554              456677788877777663    347888899999998888877421 1111110  


Q ss_pred             CCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCch
Q 002167          721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS  800 (957)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  800 (957)
                                                       ....+.|+.|++++|++++. +  ++++++|+.|++++|++++    
T Consensus       314 ---------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~----  353 (457)
T 3bz5_A          314 ---------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD----  353 (457)
T ss_dssp             ---------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB----
T ss_pred             ---------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC----
Confidence                                             01146889999999999994 3  9999999999999999997    


Q ss_pred             hhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167          801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       801 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                          ++.|+.|++++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence                24677788999999987     34567888999999999999975

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.7e-34  Score=325.68  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=89.4

Q ss_pred             ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167          476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN  555 (957)
Q Consensus       476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  555 (957)
                      |+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.  ....|+.|++++|             ++|++|++++|
T Consensus       266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~-------------~~L~~L~L~~N  328 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQN-------------PKLVYLYLNNT  328 (457)
T ss_dssp             CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTC-------------TTCCEEECTTC
T ss_pred             CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhhc-------------ccCCEEECCCC
Confidence            4456666666666665  45678888888888887777764  2246677766655             57888888888


Q ss_pred             cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167          556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS  635 (957)
Q Consensus       556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  635 (957)
                      ++++. +  +.++++|+.|++++|++++ +      +.|+.|+++.|.+.|.     ..+..|+.+++++|+++|.+|..
T Consensus       329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~-l------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          329 ELTEL-D--VSHNTKLKSLSCVNAHIQD-F------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSCC-C--CTTCTTCSEEECCSSCCCB-C------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ccccc-c--cccCCcCcEEECCCCCCCC-c------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            88874 2  7788888888888888875 2      3466667777777654     23445666677777777776654


Q ss_pred             c
Q 002167          636 L  636 (957)
Q Consensus       636 l  636 (957)
                      +
T Consensus       394 ~  394 (457)
T 3bz5_A          394 L  394 (457)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.5e-33  Score=324.33  Aligned_cols=283  Identities=27%  Similarity=0.335  Sum_probs=191.1

Q ss_pred             ccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCe
Q 002167          494 FCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF  573 (957)
Q Consensus       494 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  573 (957)
                      +..+++|++|++++|.+++. +......+|++|++++|++.+. + .+..+++|++|+++ |.+.+..  .+.++++|++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~  181 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLER  181 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCE
T ss_pred             hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCE
Confidence            44444444444444444432 2122223455555555544432 1 24555666666664 3333222  2666666666


Q ss_pred             EEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167          574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID  653 (957)
Q Consensus       574 L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  653 (957)
                      |++++|.+.+ ++.....++|++|++++|.+++..|  ++.+++|+.|++++|++++.  ..+..+++|+.|++++|.++
T Consensus       182 L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          182 LDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EECcCCcCCC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            6666666653 2322222667777777777665544  55667777777777777643  35667777777777777777


Q ss_pred             cCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccC
Q 002167          654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLP  733 (957)
Q Consensus       654 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~  733 (957)
                      +..|  +..+++|+.|++++|.+.+..+    ...+++|+.|++++|++++..|.                         
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~-------------------------  305 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPI-------------------------  305 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGG-------------------------
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchhh-------------------------
Confidence            6554  6677777777777777665433    34577888888888888765441                         


Q ss_pred             CCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEEC
Q 002167          734 GSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDL  813 (957)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~L  813 (957)
                                           ..+++|+.|+|++|++++..|  ++.+++|+.|++++|++++.  ..++++++|++|++
T Consensus       306 ---------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          306 ---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA  360 (466)
T ss_dssp             ---------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ---------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence                                 115788999999999998776  78999999999999999986  46899999999999


Q ss_pred             CCCcccccCcccCcCCCCCCeEECccCccccc
Q 002167          814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP  845 (957)
Q Consensus       814 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  845 (957)
                      ++|++++.+|  +..+++|+.|++++|++++.
T Consensus       361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          361 GHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999999887  88999999999999999983

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.7e-33  Score=319.79  Aligned_cols=261  Identities=25%  Similarity=0.314  Sum_probs=197.2

Q ss_pred             ccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCe
Q 002167          494 FCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF  573 (957)
Q Consensus       494 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  573 (957)
                      +..+++|++|++++|.+.+ ++......+|++|+++ |.+.+..  .+..+++|++|++++|.+.+.  ..+..+++|++
T Consensus       130 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  203 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLES  203 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCE
Confidence            4555555555555555553 2332233355556554 3333222  266677888888888887654  34778888888


Q ss_pred             EEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167          574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID  653 (957)
Q Consensus       574 L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  653 (957)
                      |++++|.+.+..| ....++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.++
T Consensus       204 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          204 LIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred             EEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence            8888888876555 22237888888888888753  457788889999999988886544  788888999999999888


Q ss_pred             cCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccC
Q 002167          654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLP  733 (957)
Q Consensus       654 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~  733 (957)
                      +..+  +..+++|++|++++|++.+..+    ...+++|+.|++++|++++..|..                        
T Consensus       279 ~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~------------------------  328 (466)
T 1o6v_A          279 NISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISPVS------------------------  328 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGGG------------------------
T ss_pred             cccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchhhc------------------------
Confidence            7655  7888899999999998876544    356889999999999998866521                        


Q ss_pred             CCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEEC
Q 002167          734 GSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDL  813 (957)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~L  813 (957)
                                            .+++|+.|++++|++++.  ..++.+++|+.|++++|++++.+|  +..+++|+.|++
T Consensus       329 ----------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          329 ----------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             ----------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             ----------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence                                  157899999999999986  578999999999999999999887  899999999999


Q ss_pred             CCCccccc
Q 002167          814 SSNKLAGR  821 (957)
Q Consensus       814 s~N~l~g~  821 (957)
                      ++|++++.
T Consensus       383 ~~n~~~~~  390 (466)
T 1o6v_A          383 NDQAWTNA  390 (466)
T ss_dssp             CCEEEECC
T ss_pred             cCCcccCC
Confidence            99999973

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3e-33  Score=305.24  Aligned_cols=259  Identities=32%  Similarity=0.538  Sum_probs=196.3

Q ss_pred             CCccEEEccCCcCCC--CCCccccCCCCCCeEEcCC-CccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccE
Q 002167          545 CKLTYLRLSGNHLEG--PLPPSLTNCVKLQFLDVGN-NNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVS  620 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  620 (957)
                      .+++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..++. ++|++|++++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356677777777776  6677777777777777773 6666666665544 66666666666666666666666666666


Q ss_pred             EEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCC
Q 002167          621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN  700 (957)
Q Consensus       621 L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N  700 (957)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..++                         ++|+.|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------------------------~~L~~L~L~~N  184 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------------------------KLFTSMTISRN  184 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-------------------------TTCCEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-------------------------hcCcEEECcCC
Confidence            66666666666666666666666666666666666665555443                         14555556666


Q ss_pred             cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccc
Q 002167          701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK  780 (957)
Q Consensus       701 ~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~  780 (957)
                      +++|.+|..+                                            ..+. |+.|++++|.+++.+|..++.
T Consensus       185 ~l~~~~~~~~--------------------------------------------~~l~-L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          185 RLTGKIPPTF--------------------------------------------ANLN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             EEEEECCGGG--------------------------------------------GGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred             eeeccCChHH--------------------------------------------hCCc-ccEEECcCCcccCcCCHHHhc
Confidence            6666666432                                            0123 788999999999999999999


Q ss_pred             cCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcc
Q 002167          781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSY  860 (957)
Q Consensus       781 l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~  860 (957)
                      +++|+.|+|++|++++.+|. +..+++|++|+|++|+++|.+|..+..+++|++|++++|+++|.+|...++..+....+
T Consensus       220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l  298 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence            99999999999999988777 88899999999999999999999999999999999999999999999888888888889


Q ss_pred             cCCcCCCCCCCCCCC
Q 002167          861 SGNSGLCGFPLSKSC  875 (957)
Q Consensus       861 ~gn~~lcg~~~~~~c  875 (957)
                      .||+.+||.|++ .|
T Consensus       299 ~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          299 ANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CSSSEEESTTSS-CC
T ss_pred             cCCCCccCCCCC-CC
Confidence            999999998875 47

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-31  Score=301.21  Aligned_cols=349  Identities=19%  Similarity=0.207  Sum_probs=238.0

Q ss_pred             ccCCCCCCCCCcc-ccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCc
Q 002167           63 KMMSWKEDADCCS-WDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLT  141 (957)
Q Consensus        63 ~l~~W~~~~~~c~-w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~  141 (957)
                      .+++|..+.+||. |.+..|.....++     ...........  .-..++++++|++++|.+..  +|..++..+++|+
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~   72 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE   72 (390)
T ss_dssp             -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred             CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence            3678998888885 5555553221121     22111111111  23467899999999998865  7777778999999


Q ss_pred             EEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC
Q 002167          142 LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS  221 (957)
Q Consensus       142 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~  221 (957)
                      +|++++|.+.+..|..+.. +++|++|+|++|.+.+..|..++++++|++|++++|.+. .+|..++.++++|++|++++
T Consensus        73 ~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~  150 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN  150 (390)
T ss_dssp             EEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCC
Confidence            9999999998544456665 999999999999999888888999999999999999988 67777655899999999999


Q ss_pred             CCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167          222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI  301 (957)
Q Consensus       222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  301 (957)
                      |.+++..|..++++++|++|++++|+++ .++  +.. +++|++|++++|.+++     +...++|++|++++|.+... 
T Consensus       151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~-l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-  220 (390)
T 3o6n_A          151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL-IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-  220 (390)
T ss_dssp             SCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGG-CTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred             CccCccChhhccCCCCCCEEECCCCcCC-ccc--ccc-ccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence            9999888888999999999999999988 444  333 8899999999998874     34456899999999988754 


Q ss_pred             CccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCc
Q 002167          302 PDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSS  381 (957)
Q Consensus       302 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~  381 (957)
                      |.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+.+. ....+..+++|+.|++++|.+           
T Consensus       221 ~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-----------  284 (390)
T 3o6n_A          221 RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRL-----------  284 (390)
T ss_dssp             EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCC-----------
T ss_pred             cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcC-----------
Confidence            32  2347889999999988753  5677888888888888887743 234456666666666666654           


Q ss_pred             cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeecc
Q 002167          382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLD  461 (957)
Q Consensus       382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~  461 (957)
                                    +.+|..+..+++|++|++++|++. .+|..+...  ++|+.|++++|.++.++...+++|++|+++
T Consensus       285 --------------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~  347 (390)
T 3o6n_A          285 --------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLTLS  347 (390)
T ss_dssp             --------------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred             --------------cccCcccCCCCCCCEEECCCCcce-ecCcccccc--CcCCEEECCCCccceeCchhhccCCEEEcC
Confidence                          333333344455555555555554 333333322  555555555555555444444444444444


Q ss_pred             CccC
Q 002167          462 SNSL  465 (957)
Q Consensus       462 ~n~l  465 (957)
                      +|++
T Consensus       348 ~N~~  351 (390)
T 3o6n_A          348 HNDW  351 (390)
T ss_dssp             SSCE
T ss_pred             CCCc
Confidence            4443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-32  Score=322.07  Aligned_cols=332  Identities=21%  Similarity=0.218  Sum_probs=272.3

Q ss_pred             CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167          474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRL  552 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  552 (957)
                      .+++.+++++|.+....+..+..+++|++|++++|.+++..|..+... +|++|+|++|.+++..|..+..+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            567788888888776666667788889999999998887777565544 8899999999988888888888999999999


Q ss_pred             cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167          553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP  631 (957)
Q Consensus       553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  631 (957)
                      ++|.+++..+..|.++++|++|++++|.+++..|..++. ++|++|++++|.+++..   +..+++|+.|++++|.+++ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-
Confidence            999998766666788999999999999998888877766 88999999999988652   5667889999999998874 


Q ss_pred             CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167          632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL  711 (957)
Q Consensus       632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~  711 (957)
                          +...++|+.|++++|.+....+..   .++|+.|++++|.+.+.    .....+++|+.|++++|.+++.+|..+ 
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~-  274 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF-  274 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG-
T ss_pred             ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHHHh-
Confidence                345568999999999887654332   36899999999998764    234668899999999999998877542 


Q ss_pred             hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167          712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH  791 (957)
Q Consensus       712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  791 (957)
                                                                 ..+++|+.|+|++|.+++ +|..++.+++|+.|+|++
T Consensus       275 -------------------------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          275 -------------------------------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             -------------------------------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             -------------------------------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence                                                       125789999999999987 577888899999999999


Q ss_pred             CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167          792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP  870 (957)
Q Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~  870 (957)
                      |.++ .+|..++.+++|++|+|++|++++..   +..+++|++|++++|+++|.++.. .+..+....+.++...|+.+
T Consensus       311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            9999 57888999999999999999998753   677889999999999999976533 35666677788999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5e-32  Score=314.94  Aligned_cols=321  Identities=22%  Similarity=0.179  Sum_probs=277.2

Q ss_pred             CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCc
Q 002167          501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN  580 (957)
Q Consensus       501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  580 (957)
                      +.++.+++.++ .+|..+. ..++.|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus        14 ~~v~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcC-cCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            46777777776 5565442 378899999999988888899999999999999999999889999999999999999999


Q ss_pred             cccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccc
Q 002167          581 LSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW  659 (957)
Q Consensus       581 l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~  659 (957)
                      +++..+..+.. ++|++|+|++|.+.+..+..|..+++|+.|++++|.+++..+..|.++++|++|++++|++++..+..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            99665566655 99999999999999999999999999999999999999988999999999999999999999988888


Q ss_pred             ccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCcc
Q 002167          660 LDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYY  739 (957)
Q Consensus       660 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  739 (957)
                      +..+++|+.|++++|.+.+..+...  ..+++|+.|++++|++.+.+|...+.                           
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------  222 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY---------------------------  222 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc---------------------------
Confidence            9999999999999999987665443  67899999999999988877754211                           


Q ss_pred             ceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167          740 ESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA  819 (957)
Q Consensus       740 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~  819 (957)
                                       ..+|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus       223 -----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          223 -----------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             -----------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             -----------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence                             247899999999999766678999999999999999999999999999999999999999999


Q ss_pred             ccCcccCcCCCCCCeEECccCcccccCCCC-CCCCcccCCcccCCcCCCCC
Q 002167          820 GRIPTQLASLNYLSVLNLSNNQLEGPIPGG-PQFNTFGNDSYSGNSGLCGF  869 (957)
Q Consensus       820 g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg~  869 (957)
                      +..|..+..+++|++|++++|++++..|.. ..+.........+|+..|.+
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            999999999999999999999999754432 12223334456788877753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.1e-31  Score=301.04  Aligned_cols=331  Identities=21%  Similarity=0.232  Sum_probs=259.4

Q ss_pred             CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167          474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRL  552 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  552 (957)
                      ++++.+++++|.+....+..+..+++|++|++++|.+++..+..+.. .+|++|++++|++++..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            56777788887777555555777888888888888888666655544 38888888888888877888888888999999


Q ss_pred             cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167          553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP  631 (957)
Q Consensus       553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  631 (957)
                      ++|+++...+..+.++++|++|++++|.+.+..|..+.. ++|++|++++|.+++.   .+..+++|+.|++++|.+++ 
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-  200 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-  200 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-
Confidence            999888655555788889999999999888777776765 8899999999988864   35667888999999988764 


Q ss_pred             CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167          632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL  711 (957)
Q Consensus       632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~  711 (957)
                          +...++|++|++++|.+.....   ...++|+.|++++|.+.+.    .....+++|+.|++++|.+++..|..+ 
T Consensus       201 ----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~-  268 (390)
T 3o6n_A          201 ----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF-  268 (390)
T ss_dssp             ----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG-
T ss_pred             ----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcChhHc-
Confidence                2344678999999998876532   2347899999999988764    234568899999999999988766432 


Q ss_pred             hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167          712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH  791 (957)
Q Consensus       712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  791 (957)
                                                                 ..+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus       269 -------------------------------------------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          269 -------------------------------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             -------------------------------------------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             -------------------------------------------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence                                                       125789999999999986 577778899999999999


Q ss_pred             CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCC
Q 002167          792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGF  869 (957)
Q Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~  869 (957)
                      |+++ .+|..++.+++|++|++++|+++.. |  +..+++|++|++++|++++..... .+..+....+.+++..|..
T Consensus       305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred             Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence            9999 5688899999999999999999865 3  778899999999999999864432 2444555556677666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=2.5e-32  Score=299.68  Aligned_cols=275  Identities=19%  Similarity=0.260  Sum_probs=182.8

Q ss_pred             cCCCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCC----CCCCCCccccceEecC--------CCCcEEEE
Q 002167           24 SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSW----KEDADCCSWDGVTCDS--------ATGHVIGL   91 (957)
Q Consensus        24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l   91 (957)
                      ....+..+|++||++||+++..++.             ..+.+|    ....++|.|.|+.|..        ...+|+.|
T Consensus        20 ~~~~~~~~~~~aLl~~k~~~~~~~~-------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L   86 (328)
T 4fcg_A           20 QGSTALRPYHDVLSQWQRHYNADRN-------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL   86 (328)
T ss_dssp             C--CCCCCHHHHHHHHHHHHHHCCT-------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEE
T ss_pred             eccccCchHHHHHHHHHHhccCCch-------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEE
Confidence            3345677899999999999855443             145788    4467899999999953        12345555


Q ss_pred             EcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEcc
Q 002167           92 DLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS  171 (957)
Q Consensus        92 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  171 (957)
                      +|+++.+. .                           +|..+ ..+++|++|+|++|.+. .+|..++. +++|++|+|+
T Consensus        87 ~L~~n~l~-~---------------------------lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls  135 (328)
T 4fcg_A           87 ELRSVPLP-Q---------------------------FPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLA  135 (328)
T ss_dssp             EEESSCCS-S---------------------------CCSCG-GGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEE
T ss_pred             EccCCCch-h---------------------------cChhh-hhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECC
Confidence            55555544 3                           44444 44555555555555555 55555554 5555555555


Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhh--------hCCCCCcEEEccCCCCCCCCCcccCCCCcccEEec
Q 002167          172 INSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG--------NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL  243 (957)
Q Consensus       172 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  243 (957)
                      +|.+. .+|..++++++|++|++++|++.+.+|..+.        .++++|++|++++|.++ .+|..++++++|++|++
T Consensus       136 ~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L  213 (328)
T 4fcg_A          136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI  213 (328)
T ss_dssp             SCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred             CCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence            55555 4455555555555555555555555555442        13677777777777776 66666777777777777


Q ss_pred             cCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167          244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG  323 (957)
Q Consensus       244 s~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  323 (957)
                      ++|+++ .+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus       214 ~~N~l~-~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          214 RNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             ESSCCC-CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             cCCCCC-cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            777776 46666555 7777777777777777777777777777777777777777777777777778888887777777


Q ss_pred             CCCcchhcccCCceEecCCCCCc
Q 002167          324 SIPSSIFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       324 ~~p~~l~~l~~L~~L~L~~n~l~  346 (957)
                      .+|..++.+++|+.+++..+.+.
T Consensus       292 ~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          292 RLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hccHHHhhccCceEEeCCHHHHH
Confidence            77777777777777777765443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-30  Score=310.41  Aligned_cols=346  Identities=20%  Similarity=0.229  Sum_probs=245.0

Q ss_pred             ccCCCCCCCCCcc----ccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCC
Q 002167           63 KMMSWKEDADCCS----WDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFP  138 (957)
Q Consensus        63 ~l~~W~~~~~~c~----w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~  138 (957)
                      .+++|.++.+||.    |.++.|+.      .++.........+    .-..+++++.|++++|.+..  +|+.+|..++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~   75 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSFR   75 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc------eecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccCC
Confidence            5789998888874    65555531      1222222221111    23457889999999998865  7777778999


Q ss_pred             CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEE
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLD  218 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~  218 (957)
                      +|++|+|++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|.+. .+|..++.++++|++|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence            9999999999998665667776 999999999999999888888999999999999999998 66766545899999999


Q ss_pred             ccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCc
Q 002167          219 LSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV  298 (957)
Q Consensus       219 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  298 (957)
                      +++|.+++..|..|+++++|++|++++|.+++ ++  +.. +++|+.|++++|.+++     +...++|++|++++|.+.
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~-l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSL-IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGG-CTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhh-hhhhhhhhcccCcccc-----ccCCchhheeeccCCccc
Confidence            99999998888889999999999999999884 44  233 7899999999998874     345568999999999887


Q ss_pred             ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccC
Q 002167          299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA  378 (957)
Q Consensus       299 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  378 (957)
                      ...+..   .++|+.|++++|.+++  +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+        
T Consensus       225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--------  290 (597)
T 3oja_B          225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRL--------  290 (597)
T ss_dssp             EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSCC--------
T ss_pred             cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCCC--------
Confidence            543332   3678899999998875  3677888888888888888775432 3455666666666666653        


Q ss_pred             CCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCcccee
Q 002167          379 NSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYL  458 (957)
Q Consensus       379 ~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L  458 (957)
                                       ..+|..+..+++|+.|++++|.++ .+|..+...  ++|+.|++++|.++.++...+++|+.|
T Consensus       291 -----------------~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~L~~L  350 (597)
T 3oja_B          291 -----------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNL  350 (597)
T ss_dssp             -----------------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCCTTCCCSEE
T ss_pred             -----------------CCCCcccccCCCCcEEECCCCCCC-ccCcccccC--CCCCEEECCCCCCCCcChhhcCCCCEE
Confidence                             344444444555666666666555 344444332  556666666665555544444444444


Q ss_pred             eccCccC
Q 002167          459 HLDSNSL  465 (957)
Q Consensus       459 ~l~~n~l  465 (957)
                      ++++|++
T Consensus       351 ~l~~N~~  357 (597)
T 3oja_B          351 TLSHNDW  357 (597)
T ss_dssp             ECCSSCE
T ss_pred             EeeCCCC
Confidence            4444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.9e-30  Score=285.88  Aligned_cols=303  Identities=22%  Similarity=0.290  Sum_probs=241.9

Q ss_pred             CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEcc
Q 002167          474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS  553 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  553 (957)
                      ++++.|++++|.+... + .+..+++|++|++++|.+++. +......+|++|++++|.+++.  ..+..+++|++|+++
T Consensus        44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLN  118 (347)
T ss_dssp             TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECT
T ss_pred             ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECc
Confidence            5667777777766543 3 377788888888888888754 3333445888888888887753  357788899999999


Q ss_pred             CCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC
Q 002167          554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP  633 (957)
Q Consensus       554 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  633 (957)
                      +|.+.+..+  +..+++|++|++++|.....++.....++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+
T Consensus       119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          119 EDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred             CCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence            998886433  888999999999999766566554344889999999998886544  7888999999999999885433


Q ss_pred             ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhh
Q 002167          634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES  713 (957)
Q Consensus       634 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~  713 (957)
                        +..+++|+.|++++|.+.+..+  +..+++|++|++++|++.+..+    ...+++|+.|++++|.+++. +.     
T Consensus       195 --~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~-----  260 (347)
T 4fmz_A          195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-NA-----  260 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG-----
T ss_pred             --ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-hh-----
Confidence              8889999999999999887665  8888999999999998876544    45688999999999988763 21     


Q ss_pred             hhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCc
Q 002167          714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN  793 (957)
Q Consensus       714 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  793 (957)
                                                              ...+++|+.|++++|++++.  +.++.+++|+.|+|++|+
T Consensus       261 ----------------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          261 ----------------------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             ----------------------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             ----------------------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc
Confidence                                                    01257899999999999875  468999999999999999


Q ss_pred             CCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167          794 LTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE  843 (957)
Q Consensus       794 l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  843 (957)
                      +++..|..++.+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999999999999999998777  889999999999999885

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.3e-29  Score=277.46  Aligned_cols=237  Identities=26%  Similarity=0.391  Sum_probs=160.4

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      .+..+++|++|+++++.+..  ++. + ..+++|++|++++|.++ .+|. +.. +++|++|++++|.++. ++ .+.++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~~-~-~~~~~L~~L~l~~n~i~-~~~~-~~~-l~~L~~L~L~~n~i~~-~~-~~~~l  109 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQG-I-EYLTNLEYLNLNGNQIT-DISP-LSN-LVKLTNLYIGTNKITD-IS-ALQNL  109 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CTT-G-GGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             cchhcccccEEEEeCCcccc--chh-h-hhcCCccEEEccCCccc-cchh-hhc-CCcCCEEEccCCcccC-ch-HHcCC
Confidence            45577888888888888754  333 4 77888888888888887 5665 554 8888888888888775 33 57888


Q ss_pred             CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167          187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL  266 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L  266 (957)
                      ++|++|++++|.+. .++. +. .+++|++|++++|.....++ .+..+++|++|++++|.+. .++. +.. +++|++|
T Consensus       110 ~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~-l~~L~~L  182 (347)
T 4fmz_A          110 TNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IAN-LTDLYSL  182 (347)
T ss_dssp             TTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCSEE
T ss_pred             CcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hcc-CCCCCEE
Confidence            88888888888877 3444 44 78888888888886554433 3777888888888888776 3333 333 7788888


Q ss_pred             ECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCc
Q 002167          267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  346 (957)
                      ++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.
T Consensus       183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence            888887764322  6777777777777777765433  6677777777777777664322  556666666666666555


Q ss_pred             ccccchhhhcCCCCcEEEcccc
Q 002167          347 GSVELYDFAKLKNLKVLSLSNI  368 (957)
Q Consensus       347 ~~~~~~~l~~l~~L~~L~L~~~  368 (957)
                      +.   ..+..+++|+.|++++|
T Consensus       257 ~~---~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          257 DI---NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             CC---GGGTTCTTCCEEECCSS
T ss_pred             CC---hhHhcCCCcCEEEccCC
Confidence            31   22334444444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.2e-29  Score=274.67  Aligned_cols=288  Identities=20%  Similarity=0.241  Sum_probs=219.6

Q ss_pred             CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167          499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN  578 (957)
Q Consensus       499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  578 (957)
                      +++.++++++.++ .+|..+. ..+++|++++|++.+..+..+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            5888888888887 5665543 4788999999988887788888999999999999999988888899999999999999


Q ss_pred             CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc--cCCCccccCCCCCcEEeCCCCccccCc
Q 002167          579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK--GPLPPSLVNCQYLEVLDVGNNQIDDTF  656 (957)
Q Consensus       579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~n~l~~~~  656 (957)
                      |.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.++  +..|..+..+ +|+.|++++|++++ +
T Consensus       112 n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          112 NHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I  187 (332)
T ss_dssp             SCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred             CcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence            9988 5666554 78999999999998777777888999999999999886  3667778877 88999999998886 4


Q ss_pred             cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCC
Q 002167          657 PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSS  736 (957)
Q Consensus       657 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  736 (957)
                      |..+.  ++|++|++++|.+.+..+...  ..+++|+.|++++|++++..|..+                          
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~--------------------------  237 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL--------------------------  237 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG--------------------------
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh--------------------------
Confidence            44333  678888888888766554433  456777888888887776554321                          


Q ss_pred             CccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhc------cCCCE
Q 002167          737 NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL------TELES  810 (957)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L------~~L~~  810 (957)
                                        ..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++..+..|...      .+|+.
T Consensus       238 ------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~  298 (332)
T 2ft3_A          238 ------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG  298 (332)
T ss_dssp             ------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred             ------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence                              11466777888888877 677777778888888888888877666666543      56778


Q ss_pred             EECCCCccc--ccCcccCcCCCCCCeEECccCc
Q 002167          811 LDLSSNKLA--GRIPTQLASLNYLSVLNLSNNQ  841 (957)
Q Consensus       811 L~Ls~N~l~--g~ip~~l~~l~~L~~L~ls~N~  841 (957)
                      |++++|++.  +..|..+..++.|+.+++++|+
T Consensus       299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             eEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888776  5666777777888888887774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.4e-28  Score=271.02  Aligned_cols=197  Identities=21%  Similarity=0.235  Sum_probs=135.1

Q ss_pred             CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167          499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN  578 (957)
Q Consensus       499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  578 (957)
                      +++.++++++.++ .+|..+. ..+++|++++|++++..+..+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCcc-ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            5677777777776 4554432 3677888888888777777788888888888888888877788888888888888888


Q ss_pred             CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCcc--CCCccccCCCCCcEEeCCCCccccCc
Q 002167          579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG--PLPPSLVNCQYLEVLDVGNNQIDDTF  656 (957)
Q Consensus       579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~  656 (957)
                      |+++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++.  ..+..+.++++|++|++++|.++.. 
T Consensus       110 n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-  186 (330)
T 1xku_A          110 NQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  186 (330)
T ss_dssp             SCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             CcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-
Confidence            8887 5555443 678888888888887777777778888888888887753  5566777777777777777777643 


Q ss_pred             cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcC
Q 002167          657 PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTG  704 (957)
Q Consensus       657 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g  704 (957)
                      |..+.  ++|++|++++|++.+..+...  ..+++|+.|++++|++++
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCE
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCce
Confidence            33222  455555555555544333222  334455555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=7.1e-32  Score=312.48  Aligned_cols=392  Identities=19%  Similarity=0.157  Sum_probs=241.3

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCC----CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCC-
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG----HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT-  212 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~-  212 (957)
                      ++|++|++++|++++.....+...+++|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567777777777643334433347788888888887764    34666777888888888888876555555555565 


Q ss_pred             ---CCcEEEccCCCCCC----CCCcccCCCCcccEEeccCCCCccccchhHhhh----ccCCcEEECcCCcCCccC----
Q 002167          213 ---QLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN----ITQLAYLDLSSNGFSGHI----  277 (957)
Q Consensus       213 ---~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~----l~~L~~L~Ls~n~l~~~~----  277 (957)
                         +|++|++++|.+++    .++..+.++++|++|++++|.+.+..+..+...    .++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    347778888889999998888875555544432    346888888888887633    


Q ss_pred             cccccCcCCCcEEEeccCcCcccCCcccc-----ccCcCceeeccCCcCCCC----CCcchhcccCCceEecCCCCCccc
Q 002167          278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFT-----NLTQLSFLGLAYNELIGS----IPSSIFELLNLTEIYLSFSNFSGS  348 (957)
Q Consensus       278 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~  348 (957)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45566778888888888887654444333     245788888888877653    455666677777777777766532


Q ss_pred             ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCC-----cChhhhcCCCCCEEECcCCcCCCCCC
Q 002167          349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQHQLELLDLSENQIGGRIP  423 (957)
Q Consensus       349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~~~~L~~L~Ls~n~l~~~~p  423 (957)
                      ... .+..                    .....+++|++|++++|.++.     ++..+..+++|++|++++|.+++..+
T Consensus       243 ~~~-~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          243 GMA-ELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHH-HHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHH-HHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            110 0000                    000123344444444444443     56667778888888888887765444


Q ss_pred             hhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC----CCccccCCCC
Q 002167          424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE----IPSSFCNLSS  499 (957)
Q Consensus       424 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~p~~l~~l~~  499 (957)
                      ..+...-                                       ....++|+.|++++|.+++.    ++..+..+++
T Consensus       302 ~~l~~~l---------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  342 (461)
T 1z7x_W          302 RLLCETL---------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  342 (461)
T ss_dssp             HHHHHHH---------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             HHHHHHh---------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence            3333210                                       00013445555555555443    3445556677


Q ss_pred             CCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC-CCCCccEEEccCCcCCC----CCCccccCCCCCCeE
Q 002167          500 IQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLRLSGNHLEG----PLPPSLTNCVKLQFL  574 (957)
Q Consensus       500 L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L  574 (957)
                      |++|++++|.+++..+..+..                   .+. ..++|++|++++|++++    .+|..+..+++|++|
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQ-------------------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             ccEEEccCCccccccHHHHHH-------------------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            777777777776443322211                   000 13466777777776664    456666677777777


Q ss_pred             EcCCCccccccCcc----cc--CCcccEEECCCCcCCCCC
Q 002167          575 DVGNNNLSGQIPEC----LG--NSTLQVLDMRMNNFSGSL  608 (957)
Q Consensus       575 ~Ls~n~l~~~~p~~----~~--~~~L~~L~Ls~n~l~~~~  608 (957)
                      ++++|++++.-...    +.  ..+|+.|++.++.+....
T Consensus       404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            77777766431111    11  135777777777665433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.5e-32  Score=313.39  Aligned_cols=388  Identities=19%  Similarity=0.160  Sum_probs=209.3

Q ss_pred             CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC----CCCcccCCCCcccEEeccCCCCccccchhHhhhcc---
Q 002167          189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT---  261 (957)
Q Consensus       189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~---  261 (957)
                      |++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+...++   
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~   84 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   84 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence            44444444444322222222244555555555555442    12344555566666666666655444444444444   


Q ss_pred             -CCcEEECcCCcCCc----cCcccccCcCCCcEEEeccCcCcccCCcccc-----ccCcCceeeccCCcCCCCC----Cc
Q 002167          262 -QLAYLDLSSNGFSG----HIPSSFSNLQQLLWLNLEYNNFVGKIPDMFT-----NLTQLSFLGLAYNELIGSI----PS  327 (957)
Q Consensus       262 -~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~----p~  327 (957)
                       +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..    +.
T Consensus        85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence             46666666666653    3455666666777777777666543333222     2345777777777665432    34


Q ss_pred             chhcccCCceEecCCCCCcccccchhhh----cCCCCcEEEcccccccccccccCCCccccccccccccccCCC-----c
Q 002167          328 SIFELLNLTEIYLSFSNFSGSVELYDFA----KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----F  398 (957)
Q Consensus       328 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l  398 (957)
                      .+..+++|++|++++|.+.+........    ..++|+.|++++|                         .++.     +
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-------------------------~l~~~~~~~l  219 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-------------------------GVTSDNCRDL  219 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-------------------------CCBTTHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-------------------------CCcHHHHHHH
Confidence            4445566666666666654221111000    1223444444333                         3332     4


Q ss_pred             ChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccE
Q 002167          399 PDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS  478 (957)
Q Consensus       399 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  478 (957)
                      +..+..+++|++|++++|.+++.....+...-                                       ....++|++
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~---------------------------------------~~~~~~L~~  260 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGL---------------------------------------LHPSSRLRT  260 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH---------------------------------------TSTTCCCCE
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHH---------------------------------------hcCCCCceE
Confidence            55666677777777777766532221111100                                       000134444


Q ss_pred             EEeccCCccCC----CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccC
Q 002167          479 FSISNNSLTGE----IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG  554 (957)
Q Consensus       479 L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  554 (957)
                      |++++|.+++.    ++..+..+++|++|++++|.+++..+..+...                  .....++|++|++++
T Consensus       261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------------------LLEPGCQLESLWVKS  322 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH------------------HTSTTCCCCEEECTT
T ss_pred             EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH------------------hccCCccceeeEcCC
Confidence            44455544432    34455566777777777776654322221110                  001124677777777


Q ss_pred             CcCCCC----CCccccCCCCCCeEEcCCCccccccCcccc------CCcccEEECCCCcCCC----CCccccccCCCccE
Q 002167          555 NHLEGP----LPPSLTNCVKLQFLDVGNNNLSGQIPECLG------NSTLQVLDMRMNNFSG----SLPQTFAKSCVLVS  620 (957)
Q Consensus       555 n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~  620 (957)
                      |.+++.    ++..+..+++|++|++++|.+++..+..+.      .++|++|++++|.+++    .+|..+..+++|++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            777654    455667778888888888888765444332      3578888888888875    66777777888888


Q ss_pred             EEccCCcCccCCCcc----c-cCCCCCcEEeCCCCccccCccc
Q 002167          621 LNLNGNRLKGPLPPS----L-VNCQYLEVLDVGNNQIDDTFPY  658 (957)
Q Consensus       621 L~Ls~n~l~~~~p~~----l-~~l~~L~~L~ls~n~l~~~~p~  658 (957)
                      |++++|++++.-...    + ....+|+.|++.++.+....++
T Consensus       403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            888888876531111    1 1234677777777666544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-27  Score=262.94  Aligned_cols=222  Identities=21%  Similarity=0.287  Sum_probs=137.5

Q ss_pred             CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEE
Q 002167          473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLR  551 (957)
Q Consensus       473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  551 (957)
                      +++++.|++++|.+++..|..|.++++|++|++++|.+++..|..+.. .+|++|++++|+++ .+|..+.  ++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            345566666666666555666666777777777777766555555443 36666666666666 3333333  5677777


Q ss_pred             ccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc
Q 002167          552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK  629 (957)
Q Consensus       552 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  629 (957)
                      +++|++.+..+..+.++++|++|++++|.++.  ..|..+...+|++|++++|++++ +|..+.  ++|++|++++|.++
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence            77777776666667777777777777777742  44544444467777777777664 444332  56777777777777


Q ss_pred             cCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCc
Q 002167          630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT  703 (957)
Q Consensus       630 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~  703 (957)
                      +..+..+..+++|+.|++++|++++..+.++..+++|++|++++|++. .+|...  ..+++|+.|++++|+++
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL--PDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG--GGCTTCCEEECCSSCCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh--hcCccCCEEECCCCCCC
Confidence            666667777777777777777777766666666666666666666554 222221  33444444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=4.7e-27  Score=258.85  Aligned_cols=196  Identities=24%  Similarity=0.302  Sum_probs=96.2

Q ss_pred             CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEE
Q 002167          473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLR  551 (957)
Q Consensus       473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  551 (957)
                      ++.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+... +|++|++++|+++ .+|..+.  ++|++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            3455566666666665555556666666666666666665545444332 5555555555554 2232222  4555555


Q ss_pred             ccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcC
Q 002167          552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL  628 (957)
Q Consensus       552 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  628 (957)
                      +++|++++..+..+.++++|++|++++|.+..  ..+..+.. ++|++|++++|.++. +|..+.  ++|++|++++|++
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence            55555555444455555555555555555532  33333332 444444444444442 222221  3444444444444


Q ss_pred             ccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccc
Q 002167          629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN  674 (957)
Q Consensus       629 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n  674 (957)
                      ++..|..+..+++|++|++++|++++..+.++..+++|++|++++|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            4444444444444444444444444443333444333333333333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=262.65  Aligned_cols=257  Identities=19%  Similarity=0.202  Sum_probs=169.1

Q ss_pred             CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEcc
Q 002167          546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLN  624 (957)
Q Consensus       546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  624 (957)
                      +|++|++++|++++..+..+.++++|++|++++|++++..|..+.. ++|++|++++|++++..+..|..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            4555555555555444444555555555555555555444444443 555666666666554444446666666666666


Q ss_pred             CCcCccCCC-ccccCCCCCcEEeCCCC-ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcC
Q 002167          625 GNRLKGPLP-PSLVNCQYLEVLDVGNN-QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQL  702 (957)
Q Consensus       625 ~n~l~~~~p-~~l~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l  702 (957)
                      +|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+...  ..+++|+.|++++|++
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCS
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCcc
Confidence            666664332 35666666666666666 3555555566666677777777776666555443  4466777777777776


Q ss_pred             cCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCccccc---
Q 002167          703 TGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVG---  779 (957)
Q Consensus       703 ~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~---  779 (957)
                      + .+|...                                           ...+++|+.|++++|++++..+..+.   
T Consensus       211 ~-~~~~~~-------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          211 I-LLLEIF-------------------------------------------VDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             T-THHHHH-------------------------------------------HHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             c-cchhhh-------------------------------------------hhhcccccEEECCCCcccccccccccccc
Confidence            4 233221                                           12256788889999988886665543   


Q ss_pred             ccCCCcEEECCCCcCCC----CCchhhhhccCCCEEECCCCcccccCccc-CcCCCCCCeEECccCcccccCCCC
Q 002167          780 KLNSLKSLNISHNNLTG----CIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       780 ~l~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                      ..+.++.++|++|.+++    .+|+.++.+++|++||+++|+++ .+|.. +..+++|++|++++|+++|.+|.-
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            45678889999998887    47888999999999999999999 56655 589999999999999999998843

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.8e-29  Score=300.44  Aligned_cols=443  Identities=14%  Similarity=0.101  Sum_probs=190.5

Q ss_pred             CCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCC--CCCCch-----------hhcCCC
Q 002167           72 DCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNG--SKISSG-----------FTDQFP  138 (957)
Q Consensus        72 ~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~i~~~-----------~~~~l~  138 (957)
                      -|++|.++.+... .   .+.+..+ ....++.  .+..+++|++|+|+++....  ..+|..           ++..++
T Consensus        40 vck~W~~~~~~~~-~---~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETR-E---HVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHC-C---EEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccc-c---EEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            3558999865322 1   2233322 1111111  34567777777776643210  001111           112455


Q ss_pred             CCcEEECCCCccCccCchhhhhcCCC-CCEEEccCCcC-CC-CcchhccCCCCCCEEEccCCcCCCCCch---hhhhCCC
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGNNITQ-LAYLDLSINSF-IG-HIPSSFSNLHQLRHLDLQSNNFVGKIPA---SLGNNIT  212 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~-L~~L~Ls~n~l-~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~~l~  212 (957)
                      +|++|+|++|.+++..+..+...+++ |++|+|++|.. .. .++....++++|++|+|++|.+.+.-..   .+...++
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~  192 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT  192 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence            55555555555554444444331222 55555555431 10 1112223455555555555544332111   1112445


Q ss_pred             CCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEe
Q 002167          213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL  292 (957)
Q Consensus       213 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  292 (957)
                      +|++|++++|.+++...                    +.++..+.. +++|++|++++|.+.+ ++..+..+++|++|++
T Consensus       193 ~L~~L~L~~n~~~~~~~--------------------~~l~~~~~~-~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l  250 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISP--------------------KDLETIARN-CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG  250 (592)
T ss_dssp             CCCEEECTTCCCSSCCH--------------------HHHHHHHHH-CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred             CccEEEeeccCCCccCH--------------------HHHHHHHhh-CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence            55555555555442111                    112222222 4444444444444442 3344444444555544


Q ss_pred             ccCcCc---ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167          293 EYNNFV---GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       293 ~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      +.+...   +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+.+......+..+++|+.|+++++.
T Consensus       251 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~  329 (592)
T 3ogk_B          251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI  329 (592)
T ss_dssp             CBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG
T ss_pred             cccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc
Confidence            432111   1222334444555555555432 223444444555555555555554332222234455555555555221


Q ss_pred             ccccccccCCCcccccccccccc----------c-cCC--CcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceE
Q 002167          370 LSVSTKLTANSSFPNLSALDLSA----------C-NIS--EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE  436 (957)
Q Consensus       370 ~~~~~~~~~~~~l~~L~~L~L~~----------~-~l~--~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~  436 (957)
                       ...........+++|++|++++          | .++  .++.....+++|++|+++.+.+++..+..+.. .+++|+.
T Consensus       330 -~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~  407 (592)
T 3ogk_B          330 -GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCD  407 (592)
T ss_dssp             -HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCE
T ss_pred             -CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcE
Confidence             1110001111234444444442          2 222  12223345677777777666666544444432 1233333


Q ss_pred             EECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC-----CCccccCCCCCCEEEcccCc--
Q 002167          437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE-----IPSSFCNLSSIQYLDLSNNS--  509 (957)
Q Consensus       437 L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~--  509 (957)
                      |+++.+.                                      ..|.+++.     ++..+..+++|++|++++|.  
T Consensus       408 L~l~~~~--------------------------------------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~  449 (592)
T 3ogk_B          408 FRLVLLD--------------------------------------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG  449 (592)
T ss_dssp             EEEEECS--------------------------------------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred             EEEeecC--------------------------------------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence            3332110                                      02223321     22224456666666665433  


Q ss_pred             CccCCCcccc--ccccceeecccccccC-cCCCcCCCCCCccEEEccCCcCCCC-CCccccCCCCCCeEEcCCCccccc
Q 002167          510 LSGQIPQCLG--NSTLETLDLRMNNFQG-SIPQTNAKGCKLTYLRLSGNHLEGP-LPPSLTNCVKLQFLDVGNNNLSGQ  584 (957)
Q Consensus       510 l~~~~p~~~~--~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~  584 (957)
                      +++..+..+.  .++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus       450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            3332222221  2245555555555543 2233334456666666666665432 233334566666666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.6e-26  Score=253.35  Aligned_cols=226  Identities=19%  Similarity=0.266  Sum_probs=211.0

Q ss_pred             CCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167          136 QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA  215 (957)
Q Consensus       136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~  215 (957)
                      ..+++++|+|++|.+. .+|..++. +++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+. ++++|+
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCC
T ss_pred             cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCC
Confidence            4588999999999998 99999998 999999999999999 88999999999999999999998 8899887 899999


Q ss_pred             EEEccCCCCCCCCCcccCC---------CCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCC
Q 002167          216 YLDLSSNSFSGHIPSSFSN---------LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ  286 (957)
Q Consensus       216 ~L~Ls~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  286 (957)
                      +|++++|++.+.+|..++.         +++|++|++++|+++ .+|..+.. +++|++|++++|.+++ +|..+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-CchhhccCCC
Confidence            9999999999899988765         999999999999998 99998877 9999999999999995 6778999999


Q ss_pred             CcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcc
Q 002167          287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS  366 (957)
Q Consensus       287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  366 (957)
                      |++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++. .+..+++|+.+++.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECC
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999988774 57899999999998


Q ss_pred             cccc
Q 002167          367 NISL  370 (957)
Q Consensus       367 ~~~~  370 (957)
                      .+.+
T Consensus       310 ~~~~  313 (328)
T 4fcg_A          310 PHLQ  313 (328)
T ss_dssp             GGGS
T ss_pred             HHHH
Confidence            7764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-26  Score=249.03  Aligned_cols=233  Identities=25%  Similarity=0.324  Sum_probs=166.3

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccc--cCccc-cCCcccEEECCCCcCCCCCccccccCCCccEE
Q 002167          545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQ--IPECL-GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSL  621 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  621 (957)
                      ++|++|++++|+++...+..+.++++|++|++++|.++..  .|..+ ..++|++|++++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4566666666666644444466667777777777766522  12222 2366666666666666 345556677777777


Q ss_pred             EccCCcCccCCC-ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCC
Q 002167          622 NLNGNRLKGPLP-PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN  700 (957)
Q Consensus       622 ~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N  700 (957)
                      ++++|++++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.                     
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------  165 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------  165 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------
Confidence            777777765544 4666777777777777777666666665555555555555544321                     


Q ss_pred             cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccc
Q 002167          701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK  780 (957)
Q Consensus       701 ~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~  780 (957)
                          .+|..+                                            ..+++|+.|+|++|++++..|..++.
T Consensus       166 ----~~~~~~--------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          166 ----FLPDIF--------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             ----EECSCC--------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ----cchhHH--------------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcC
Confidence                122110                                            11467888899999998888899999


Q ss_pred             cCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCC
Q 002167          781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIP  847 (957)
Q Consensus       781 l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip  847 (957)
                      +++|+.|+|++|++++..+..+..+++|++||+++|++++.+|..+..+ ++|++|++++|+++|.++
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999999999999888889999999999999999999999999998 499999999999998765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.6e-27  Score=262.26  Aligned_cols=282  Identities=17%  Similarity=0.187  Sum_probs=207.0

Q ss_pred             CCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEE
Q 002167          496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLD  575 (957)
Q Consensus       496 ~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  575 (957)
                      .++.....+++++.++ .+|..+. .+|++|++++|++++..+..+..+++|++|++++|++++..|..+.++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            3455556677777776 4555433 2677777777777766666777788888888888888877777788888888888


Q ss_pred             cCCCccccccCccccC-CcccEEECCCCcCCCCCc-cccccCCCccEEEccCCc-CccCCCccccCCCCCcEEeCCCCcc
Q 002167          576 VGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLP-QTFAKSCVLVSLNLNGNR-LKGPLPPSLVNCQYLEVLDVGNNQI  652 (957)
Q Consensus       576 Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~l  652 (957)
                      +++|++++..+..+.. ++|++|++++|++++..+ ..+..+++|++|++++|+ +.+..+..+.++++|++|++++|++
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            8888887544443544 788888888888875433 467788888888888884 6655567788888888888888888


Q ss_pred             ccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceeccccc
Q 002167          653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL  732 (957)
Q Consensus       653 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~  732 (957)
                      ++..|..+..+++|++|++++|.+....+..  ...+++|+.|++++|++++..+..+..                    
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------  244 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSELST--------------------  244 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccccccccccc--------------------
Confidence            8877888888888888888888763322111  123678888999998888755432100                    


Q ss_pred             CCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCc----cCcccccccCCCcEEECCCCcCCCCCchh-hhhccC
Q 002167          733 PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQR----KIPEVVGKLNSLKSLNISHNNLTGCIPSS-LRNLTE  807 (957)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~L~~  807 (957)
                                           ......++.++|+++.+++    .+|+.++.+++|+.|+|++|+++ .+|.. |+++++
T Consensus       245 ---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~  302 (353)
T 2z80_A          245 ---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS  302 (353)
T ss_dssp             -----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             ---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence                                 0113556778888888876    57888999999999999999999 45655 699999


Q ss_pred             CCEEECCCCcccccCc
Q 002167          808 LESLDLSSNKLAGRIP  823 (957)
Q Consensus       808 L~~L~Ls~N~l~g~ip  823 (957)
                      |++|+|++|++++..|
T Consensus       303 L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          303 LQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             CCEEEeeCCCccCcCC
Confidence            9999999999998766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.9e-26  Score=259.47  Aligned_cols=252  Identities=20%  Similarity=0.217  Sum_probs=164.7

Q ss_pred             ceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCc
Q 002167          524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN  603 (957)
Q Consensus       524 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~  603 (957)
                      ..++.++..++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.+++..|.                
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----------------  117 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG----------------  117 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh----------------
Confidence            44555555444 2333322  3555555555555555555555555555555555555544444                


Q ss_pred             CCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCC
Q 002167          604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDT  683 (957)
Q Consensus       604 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~  683 (957)
                             .|.++++|++|+|++|++++..+..|.++++|++|++++|++....+..|..+++|++|++++|...+.++..
T Consensus       118 -------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  190 (452)
T 3zyi_A          118 -------AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG  190 (452)
T ss_dssp             -------TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             -------hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence                   4444444444444444444433344444555555555555544444444455555555555554333333321


Q ss_pred             CCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEE
Q 002167          684 KTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATI  763 (957)
Q Consensus       684 ~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  763 (957)
                       ....+++|+.|++++|++++. |..                                             ..+++|+.|
T Consensus       191 -~~~~l~~L~~L~L~~n~l~~~-~~~---------------------------------------------~~l~~L~~L  223 (452)
T 3zyi_A          191 -AFEGLFNLKYLNLGMCNIKDM-PNL---------------------------------------------TPLVGLEEL  223 (452)
T ss_dssp             -TTTTCTTCCEEECTTSCCSSC-CCC---------------------------------------------TTCTTCCEE
T ss_pred             -hccCCCCCCEEECCCCccccc-ccc---------------------------------------------cccccccEE
Confidence             123456667777777766642 210                                             015788999


Q ss_pred             EcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167          764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE  843 (957)
Q Consensus       764 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  843 (957)
                      +|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             ccCCC
Q 002167          844 GPIPG  848 (957)
Q Consensus       844 g~ip~  848 (957)
                      +.+.-
T Consensus       304 CdC~~  308 (452)
T 3zyi_A          304 CDCDI  308 (452)
T ss_dssp             CSTTT
T ss_pred             CCCCc
Confidence            87653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=4.5e-26  Score=248.12  Aligned_cols=256  Identities=29%  Similarity=0.414  Sum_probs=214.4

Q ss_pred             ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccC--
Q 002167           74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFT--  151 (957)
Q Consensus        74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--  151 (957)
                      |.|.+|.|...            +++ .+|.  .  -.++|++|+|++|.+..  +|..+|..+++|++|++++|.+.  
T Consensus         7 C~~~~l~c~~~------------~l~-~ip~--~--~~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~   67 (306)
T 2z66_A            7 CSGTEIRCNSK------------GLT-SVPT--G--IPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK   67 (306)
T ss_dssp             EETTEEECCSS------------CCS-SCCS--C--CCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred             eCCCEEEcCCC------------Ccc-cCCC--C--CCCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence            78988888643            222 2332  2  23689999999999974  77776699999999999999987  


Q ss_pred             ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcc
Q 002167          152 GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS  231 (957)
Q Consensus       152 ~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~  231 (957)
                      +.+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..
T Consensus        68 ~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  145 (306)
T 2z66_A           68 GCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  145 (306)
T ss_dssp             EEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred             cCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence            333677776 999999999999987 467779999999999999999885444233348999999999999999888888


Q ss_pred             cCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCc
Q 002167          232 FSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ  310 (957)
Q Consensus       232 l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  310 (957)
                      +.++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            9999999999999999986 46666665 999999999999999888889999999999999999999877778899999


Q ss_pred             CceeeccCCcCCCCCCcchhccc-CCceEecCCCCCcccccc
Q 002167          311 LSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVEL  351 (957)
Q Consensus       311 L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~  351 (957)
                      |++|++++|.+++..|..+..++ +|++|++++|.+.+..+.
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            99999999999988888888884 899999999998865443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.3e-28  Score=265.34  Aligned_cols=249  Identities=20%  Similarity=0.222  Sum_probs=158.9

Q ss_pred             ccceeecccccccCcCCCcCCCCCCccEEEccCCcCC-CCCCcccc-------CCCCCCeEEcCCCccccccCccc--cC
Q 002167          522 TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE-GPLPPSLT-------NCVKLQFLDVGNNNLSGQIPECL--GN  591 (957)
Q Consensus       522 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~  591 (957)
                      +|++|++++|.+  .+|..+...  |+.|++++|++. ..+|..+.       ++++|++|++++|.+++.+|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            566666666666  444433322  566666666552 33444433       45556666666666655555543  22


Q ss_pred             -CcccEEECCCCcCCCCCccccccC-----CCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccc
Q 002167          592 -STLQVLDMRMNNFSGSLPQTFAKS-----CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE  665 (957)
Q Consensus       592 -~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  665 (957)
                       ++|++|++++|++++. |..+..+     ++|++|+|++|++++..|..|+++++|++|++++|++.+.++        
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------  190 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------  190 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence             5555555555555544 4444444     555555555555555444555555555555555555443211        


Q ss_pred             ccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC--CchHHHhhhhccccCCCCCceecccccCCCCCccceEE
Q 002167          666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV--LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIF  743 (957)
Q Consensus       666 L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~--ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  743 (957)
                                    .+.......+++|+.|++++|++++.  ++..                                  
T Consensus       191 --------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----------------------------------  222 (312)
T 1wwl_A          191 --------------LISALCPLKFPTLQVLALRNAGMETPSGVCSA----------------------------------  222 (312)
T ss_dssp             --------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH----------------------------------
T ss_pred             --------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHH----------------------------------
Confidence                          11111124466777777777777641  1211                                  


Q ss_pred             EEEechhHHHHhhcccceEEEcccCccCccCc-ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccC
Q 002167          744 LTMKGIDLQMERILTTFATIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRI  822 (957)
Q Consensus       744 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i  822 (957)
                               .+..+++|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. 
T Consensus       223 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-  289 (312)
T 1wwl_A          223 ---------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-  289 (312)
T ss_dssp             ---------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred             ---------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-
Confidence                     12235789999999999999886 56677899999999999999 7888777  8999999999999987 


Q ss_pred             cccCcCCCCCCeEECccCccccc
Q 002167          823 PTQLASLNYLSVLNLSNNQLEGP  845 (957)
Q Consensus       823 p~~l~~l~~L~~L~ls~N~l~g~  845 (957)
                      |. +..+++|++|++++|++++.
T Consensus       290 p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          290 PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hh-HhhCCCCCEEeccCCCCCCC
Confidence            66 89999999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=256.56  Aligned_cols=252  Identities=20%  Similarity=0.210  Sum_probs=165.5

Q ss_pred             cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCC
Q 002167          523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMN  602 (957)
Q Consensus       523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n  602 (957)
                      ...++.++..++ .+|..+.  ++++.|+|++|++.+..+..|.++++|++|+|++|.++                    
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------------  101 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--------------------  101 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--------------------
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--------------------
Confidence            334455444444 2333322  34555555555555444455555555555555555554                    


Q ss_pred             cCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCC
Q 002167          603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGD  682 (957)
Q Consensus       603 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~  682 (957)
                         +..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++....+..|..+++|++|++++|...+.++.
T Consensus       102 ---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          102 ---TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             ---EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             ---ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence               44444455555555555555555544444455555555555555555544444555555555555555444333332


Q ss_pred             CCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceE
Q 002167          683 TKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFAT  762 (957)
Q Consensus       683 ~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  762 (957)
                      . ....+++|+.|++++|+++. +|..                                             ..+++|+.
T Consensus       179 ~-~~~~l~~L~~L~L~~n~l~~-~~~~---------------------------------------------~~l~~L~~  211 (440)
T 3zyj_A          179 G-AFEGLSNLRYLNLAMCNLRE-IPNL---------------------------------------------TPLIKLDE  211 (440)
T ss_dssp             T-TTTTCSSCCEEECTTSCCSS-CCCC---------------------------------------------TTCSSCCE
T ss_pred             c-hhhcccccCeecCCCCcCcc-cccc---------------------------------------------CCCcccCE
Confidence            1 12445666777777776653 2310                                             01578899


Q ss_pred             EEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcc
Q 002167          763 IDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL  842 (957)
Q Consensus       763 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l  842 (957)
                      |||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|++++..+..+..+++|+.|++++|++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             cccCC
Q 002167          843 EGPIP  847 (957)
Q Consensus       843 ~g~ip  847 (957)
                      .+.+.
T Consensus       292 ~CdC~  296 (440)
T 3zyj_A          292 NCNCD  296 (440)
T ss_dssp             ECSST
T ss_pred             cCCCC
Confidence            98765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=6.5e-29  Score=297.29  Aligned_cols=187  Identities=19%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             CCCCCcEEEccCCCCCCCCCcccCCC--CcccEEeccCCC-CccccchhHhhhccCCcEEECcCCcCCcc----Cccccc
Q 002167          210 NITQLAYLDLSSNSFSGHIPSSFSNL--QQLCYLDLDDNH-FVGEIPASLGNNITQLAYLDLSSNGFSGH----IPSSFS  282 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~  282 (957)
                      .+++|++|+|++|.+++..+..++..  .+|++|++++|. +.......+...+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            44555555555554443333333332  225555555543 11000111122255555555555554433    222233


Q ss_pred             CcCCCcEEEeccCcCc----ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCC
Q 002167          283 NLQQLLWLNLEYNNFV----GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK  358 (957)
Q Consensus       283 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  358 (957)
                      .+++|++|++++|.+.    +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....  ..        
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~--------  258 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG--------  258 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT--------
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc--cc--------
Confidence            4455555555555544    1222233344555555555544442 3344444444444444421110  00        


Q ss_pred             CCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167          359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG  420 (957)
Q Consensus       359 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~  420 (957)
                                   ..........+++|+.|+++++....+|..+..+++|++|++++|.+++
T Consensus       259 -------------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          259 -------------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             -------------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             -------------hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence                         0011122233445555555555445666666667777777777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.1e-25  Score=242.20  Aligned_cols=228  Identities=21%  Similarity=0.224  Sum_probs=144.7

Q ss_pred             cEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCC
Q 002167          548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN  626 (957)
Q Consensus       548 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  626 (957)
                      ++++.+++.++. +|..+  .++|++|++++|.+++..+..+.. ++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            456666665552 33322  245566666666655444444433 55555555555555554555555555555555555


Q ss_pred             c-CccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC
Q 002167          627 R-LKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV  705 (957)
Q Consensus       627 ~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~  705 (957)
                      + +++..|..+..+++|++|++++|.+++..|..+..+                          ++|+.|++++|++++.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------~~L~~L~l~~n~l~~~  144 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------------------------AALQYLYLQDNALQAL  144 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCCCCC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC--------------------------cCCCEEECCCCccccc
Confidence            4 443334555555555555555555555444444444                          4555555555555543


Q ss_pred             CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCc
Q 002167          706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK  785 (957)
Q Consensus       706 ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  785 (957)
                      .+..+                                            ..+++|+.|+|++|++++..+..++.+++|+
T Consensus       145 ~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          145 PDDTF--------------------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             CTTTT--------------------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CHhHh--------------------------------------------ccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            32110                                            1146677888888888876667788888888


Q ss_pred             EEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167          786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       786 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~  848 (957)
                      .|+|++|++++..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++.++.
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            888888888888888888888888888888888887777788888888888888888887664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.8e-27  Score=259.64  Aligned_cols=247  Identities=21%  Similarity=0.215  Sum_probs=193.0

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCcc-CccCchhhh-------hcCCCCCEEEccCCcCCCCcch
Q 002167          110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF-TGSIPPSLG-------NNITQLAYLDLSINSFIGHIPS  181 (957)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~ip~~l~-------~~l~~L~~L~Ls~n~l~~~~p~  181 (957)
                      ..++|++|++++|.+   .+|..+.. .  |++|++++|.+ .+.+|..+.       . +++|++|+|++|.+++.+|.
T Consensus        41 ~~~~L~~l~l~~n~l---~~p~~~~~-~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE---ADLGQFTD-I--IKSLSLKRLTVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEECTTHHHHCCTT---CCCHHHHH-H--HHHCCCCEEEEEEEECBHHHHHHHHHHHT-TSCCCEEEEEEEBCBSCCCC
T ss_pred             cCCCceeEeeccccc---ccHHHHHH-H--HhhcccccccccCCCcCHHHHHHHHHhcC-cCCccEEEccCCcccchhHH
Confidence            345677888888887   37776633 2  88888888888 456777665       4 88899999999998888887


Q ss_pred             hc--cCCCCCCEEEccCCcCCCCCchhhhhCC-----CCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcccc--
Q 002167          182 SF--SNLHQLRHLDLQSNNFVGKIPASLGNNI-----TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI--  252 (957)
Q Consensus       182 ~l--~~l~~L~~L~L~~n~l~~~~p~~l~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i--  252 (957)
                      .+  ..+++|++|++++|.+++. |..+. .+     ++|++|++++|.+++..|..++++++|++|++++|++.+.+  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence            76  8889999999999988865 76665 55     88999999999998888888899999999999999887653  


Q ss_pred             chhH-hhhccCCcEEECcCCcCCc--cCc-ccccCcCCCcEEEeccCcCcccCC-ccccccCcCceeeccCCcCCCCCCc
Q 002167          253 PASL-GNNITQLAYLDLSSNGFSG--HIP-SSFSNLQQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELIGSIPS  327 (957)
Q Consensus       253 p~~l-~~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~  327 (957)
                      +..+ ...+++|++|++++|.+++  .++ ..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|.
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~  270 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK  270 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence            3333 1348899999999998873  222 334577899999999999887664 45667889999999999888 7777


Q ss_pred             chhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccc
Q 002167          328 SIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS  371 (957)
Q Consensus       328 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~  371 (957)
                      .+.  ++|++|++++|++++. +.  +..+++|++|++++|.++
T Consensus       271 ~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          271 GLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTT
T ss_pred             hcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCC
Confidence            766  7899999999988865 32  778889999999988754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=255.85  Aligned_cols=172  Identities=27%  Similarity=0.312  Sum_probs=81.3

Q ss_pred             ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167          476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN  555 (957)
Q Consensus       476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  555 (957)
                      ++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.  ...+|++|+|++|++++ +|.   .+++|++|++++|
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCC
Confidence            444455555444 3343332  45555555555554 2333  12345555555555442 222   3355555555555


Q ss_pred             cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167          556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS  635 (957)
Q Consensus       556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  635 (957)
                      ++++. |.   .+++|+.|++++|++++ +|..+  ++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|  
T Consensus       112 ~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~--  177 (622)
T 3g06_A          112 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP--  177 (622)
T ss_dssp             CCCCC-CC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC--
T ss_pred             cCCCC-CC---CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc--
Confidence            55532 22   34555555555555552 33321  455555555555553 222   23455555555555553 33  


Q ss_pred             ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccc
Q 002167          636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRF  676 (957)
Q Consensus       636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~  676 (957)
                       ..+++|+.|++++|.+++. |..   +++|+.|++++|.+
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l  213 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRL  213 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCC
T ss_pred             -ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCcc
Confidence             3345555555555555542 211   24444555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.1e-24  Score=252.96  Aligned_cols=263  Identities=29%  Similarity=0.338  Sum_probs=220.0

Q ss_pred             CCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcC
Q 002167          498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVG  577 (957)
Q Consensus       498 ~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  577 (957)
                      .+++.|++++|.++ .+|..+. .+|++|++++|+++. +|.   .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            46899999999998 7777665 699999999999984 454   56899999999999985 554   77999999999


Q ss_pred             CCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167          578 NNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP  657 (957)
Q Consensus       578 ~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  657 (957)
                      +|++++ +|.  ..++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   ..++|+.|++++|.+++ +|
T Consensus       110 ~N~l~~-l~~--~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          110 SNPLTH-LPA--LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             SCCCCC-CCC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCC-CCC--CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence            999985 555  44789999999999985 5543   4899999999999985 454   34789999999999987 44


Q ss_pred             ccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCC
Q 002167          658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN  737 (957)
Q Consensus       658 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  737 (957)
                         ..+++|+.|++++|.+.+ ++.     .+++|+.|++++|.++. +|..                            
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~-l~~~----------------------------  219 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS-LPAL----------------------------  219 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS-CCCC----------------------------
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc-cCCC----------------------------
Confidence               457899999999999876 332     24789999999999874 3311                            


Q ss_pred             ccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCc
Q 002167          738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK  817 (957)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (957)
                                         +++|+.|+|++|++++ +|   ..+++|+.|+|++|++++ +|.   .+++|++|+|++|+
T Consensus       220 -------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          220 -------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             -------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             -------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCC
Confidence                               3678999999999987 56   556899999999999995 665   67899999999999


Q ss_pred             ccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167          818 LAGRIPTQLASLNYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       818 l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~  848 (957)
                      ++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus       273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            99 7899999999999999999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.9e-27  Score=256.75  Aligned_cols=247  Identities=21%  Similarity=0.183  Sum_probs=147.3

Q ss_pred             CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEE
Q 002167          543 KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSL  621 (957)
Q Consensus       543 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  621 (957)
                      .+++|++|++++|++++..|..+..+++|++|++++|.+++..+  +.. ++|++|++++|.+++..     ..++|+.|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            34456666666666655555556666666666666666654433  222 55666666666555321     22556666


Q ss_pred             EccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCc
Q 002167          622 NLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQ  701 (957)
Q Consensus       622 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~  701 (957)
                      ++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+.+..+... ...+++|+.|++++|.
T Consensus       105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF  180 (317)
T ss_dssp             ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSC
T ss_pred             ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCc
Confidence            66666665443322   3456666666666666555556556666666666555544332221 1134556666666666


Q ss_pred             CcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCccccccc
Q 002167          702 LTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL  781 (957)
Q Consensus       702 l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l  781 (957)
                      +++..+..                                              .+++|+.|+|++|++++. |..+..+
T Consensus       181 l~~~~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l  213 (317)
T 3o53_A          181 IYDVKGQV----------------------------------------------VFAKLKTLDLSSNKLAFM-GPEFQSA  213 (317)
T ss_dssp             CCEEECCC----------------------------------------------CCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred             Cccccccc----------------------------------------------ccccCCEEECCCCcCCcc-hhhhccc
Confidence            55421100                                              035677777777777754 4447777


Q ss_pred             CCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc-ccCcccCcCCCCCCeEECc-cCcccccCCC
Q 002167          782 NSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS-NNQLEGPIPG  848 (957)
Q Consensus       782 ~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls-~N~l~g~ip~  848 (957)
                      ++|+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       214 ~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            788888888887773 5777777778888888888887 6777777777777777777 3456666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=2.6e-24  Score=231.54  Aligned_cols=224  Identities=23%  Similarity=0.266  Sum_probs=117.0

Q ss_pred             EEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEE
Q 002167           89 IGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYL  168 (957)
Q Consensus        89 ~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L  168 (957)
                      +.+++++.++.. +|.    ...++|++|++++|.+++  ++...|..+++|++|++++|.+.+..|..+.. +++|++|
T Consensus        14 ~~~~c~~~~l~~-ip~----~~~~~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPV----GIPAASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQL   85 (285)
T ss_dssp             CEEECCSSCCSS-CCT----TCCTTCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEE
T ss_pred             eEEEcCcCCccc-CCc----CCCCCceEEEeeCCcCCc--cCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEE
Confidence            455666666542 332    123466666666666644  33333356666666666666665444444544 6666666


Q ss_pred             EccCCc-CCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC
Q 002167          169 DLSINS-FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH  247 (957)
Q Consensus       169 ~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  247 (957)
                      ++++|. +....|..+.++++|++|++++|.+.+..|..+. ++++|++|++++|.+++..+..++++++|++|++++|+
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            666664 4444455555666666666666655543333333 55556666665555554444445555555555555555


Q ss_pred             CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC
Q 002167          248 FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       248 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      ++ .+|......+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       165 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            55 333322222555555555555555444455555555555555555554443344444444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=5.7e-24  Score=244.78  Aligned_cols=227  Identities=23%  Similarity=0.252  Sum_probs=102.9

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      ++|++|+|++|++++..|..+.. +++|++|+|++|.+.+..+..|.++++|++|+|++|.++ .+|...+.++++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            34444444444444333333333 444444444444444444444444444444444444444 2222222244444444


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  297 (957)
                      +|++|.++...+..|.++++|++|++++|...+.++...+..+++|++|++++|.+++. | .+..+++|++|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence            44444444333334444444555554443333344433333344455555555544422 2 244444555555555555


Q ss_pred             cccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167          298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      .+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence            4444444455555555555555544444444444455555555555444 2233334444445555554444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6.6e-27  Score=280.02  Aligned_cols=205  Identities=16%  Similarity=0.102  Sum_probs=113.2

Q ss_pred             CCCCCEEEccCCcCCCCcchhcc-CCCCCCEEEccCC-cCCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc----CCC
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFS-NLHQLRHLDLQSN-NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF----SNL  235 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l  235 (957)
                      +++|++|+|++|.+++..+..+. .+++|++|++++| .+.......+..++++|++|++++|.+++..+..+    ..+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            56666666666666555444443 4666666666666 33322122233356677777777666554433333    355


Q ss_pred             CcccEEeccCCC--CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc-------CcccCCcccc
Q 002167          236 QQLCYLDLDDNH--FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN-------FVGKIPDMFT  306 (957)
Q Consensus       236 ~~L~~L~Ls~n~--l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~l~  306 (957)
                      ++|++|++++|.  +.......+...+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ ++..+.
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~  262 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALS  262 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHh
Confidence            677777777775  2211122222336777777777773222356666677777777755442       222 233566


Q ss_pred             ccCcCcee-eccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccc
Q 002167          307 NLTQLSFL-GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI  368 (957)
Q Consensus       307 ~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~  368 (957)
                      ++++|+.| .+.... .+.++..+..+++|++|++++|.+.+......+..+++|+.|++++|
T Consensus       263 ~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          263 GCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             cCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            67777777 333322 12344445566777777777777553332223445666666666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-25  Score=259.36  Aligned_cols=235  Identities=21%  Similarity=0.178  Sum_probs=110.2

Q ss_pred             CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccC
Q 002167          546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG  625 (957)
Q Consensus       546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  625 (957)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..| ....++|++|+|++|.+++..     ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence            34444444444444444444444444444444444443333 111144444444444444221     114455555555


Q ss_pred             CcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC
Q 002167          626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV  705 (957)
Q Consensus       626 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~  705 (957)
                      |.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+.+.++.... ..+++|+.|++++|.+++.
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCccccc
Confidence            555443322   234455555555555555555555555555555555554433222110 1233444444444444432


Q ss_pred             CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCc
Q 002167          706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK  785 (957)
Q Consensus       706 ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  785 (957)
                      .+..                                              .+++|+.|+|++|.+++..| .++.+++|+
T Consensus       185 ~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~  217 (487)
T 3oja_A          185 KGQV----------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT  217 (487)
T ss_dssp             ECCC----------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred             cccc----------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence            1100                                              02445555566665555333 355566666


Q ss_pred             EEECCCCcCCCCCchhhhhccCCCEEECCCCccc-ccCcccCcCCCCCCeEECc
Q 002167          786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS  838 (957)
Q Consensus       786 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls  838 (957)
                      .|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            66666666664 4555555666666666666665 4555555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=6.5e-26  Score=247.79  Aligned_cols=245  Identities=22%  Similarity=0.223  Sum_probs=193.7

Q ss_pred             ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCC
Q 002167          522 TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRM  601 (957)
Q Consensus       522 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~  601 (957)
                      +|++|++++|++++..|..+..+++|++|++++|++++..+  +..+++|++|++++|.+++..+    .++|++|++++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~  108 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCC
Confidence            56666666666665555666777888888888888876544  7788888888888888874332    26888888888


Q ss_pred             CcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc-cccccccEEEcccccccccC
Q 002167          602 NNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL-DVLLELQVLILRSNRFWGPI  680 (957)
Q Consensus       602 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~  680 (957)
                      |++++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..
T Consensus       109 n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            8888655443   5678899999999888777788888999999999999888777766 47889999999999887653


Q ss_pred             CCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccc
Q 002167          681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTF  760 (957)
Q Consensus       681 ~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  760 (957)
                      +.    ..+++|+.|++++|++++..|. +                                            ..+++|
T Consensus       186 ~~----~~l~~L~~L~Ls~N~l~~l~~~-~--------------------------------------------~~l~~L  216 (317)
T 3o53_A          186 GQ----VVFAKLKTLDLSSNKLAFMGPE-F--------------------------------------------QSAAGV  216 (317)
T ss_dssp             CC----CCCTTCCEEECCSSCCCEECGG-G--------------------------------------------GGGTTC
T ss_pred             cc----cccccCCEEECCCCcCCcchhh-h--------------------------------------------cccCcc
Confidence            22    2378999999999999875442 1                                            125789


Q ss_pred             eEEEcccCccCccCcccccccCCCcEEECCCCcCC-CCCchhhhhccCCCEEECC-CCcccccCccc
Q 002167          761 ATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT-GCIPSSLRNLTELESLDLS-SNKLAGRIPTQ  825 (957)
Q Consensus       761 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls-~N~l~g~ip~~  825 (957)
                      +.|+|++|++++ +|..++.+++|+.|+|++|.++ +.+|..++.+++|+.|+++ .+.+.|..|..
T Consensus       217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            999999999984 7888999999999999999999 8899999999999999999 45677766654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=241.11  Aligned_cols=229  Identities=28%  Similarity=0.279  Sum_probs=168.2

Q ss_pred             CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167          112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH  191 (957)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  191 (957)
                      +++++|+|++|.+..  ++...|..+++|++|+|++|.+.+..+..+.. +++|++|+|++|.++...+..|.++++|++
T Consensus        64 ~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCE--ECTTTTSSCSSCCEEECCSSCCCEECGGGGTT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCe--eCHHHhhCCCCCCEEECCCCcCCccChhhccC-CccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            678888888888865  33333478888888888888887444445554 888888888888888666667888888888


Q ss_pred             EEccCCcCCCCCchhhhhCCCCCcEEEccCCC-CCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcC
Q 002167          192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNS-FSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS  270 (957)
Q Consensus       192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~  270 (957)
                      |++++|.+. .++...+.++++|++|++++|. +....+..|.++++|++|++++|+++ .+|. +.. +++|++|++++
T Consensus       141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-l~~L~~L~Ls~  216 (440)
T 3zyj_A          141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-LIKLDELDLSG  216 (440)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT-CSSCCEEECTT
T ss_pred             eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC-CcccCEEECCC
Confidence            888888877 4444333478888888888754 44333446778888888888888877 6663 333 77888888888


Q ss_pred             CcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167          271 NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG  347 (957)
Q Consensus       271 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  347 (957)
                      |.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            88877777778888888888888888877777777778888888888887776666666677777777777776653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.8e-23  Score=221.27  Aligned_cols=217  Identities=25%  Similarity=0.335  Sum_probs=121.6

Q ss_pred             CCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCcc
Q 002167           71 ADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF  150 (957)
Q Consensus        71 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l  150 (957)
                      .++|.|.|+.|... +.++.+++++++++. +|.  .+  .+++++|+|++|.+.+  ++...|..+++|++|++++|.+
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~--~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l   73 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NI--PADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKL   73 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCSC--CCTTSSSSCTTCCEEECCSSCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CC--CCCCCEEECcCCCCCe--eCHHHhcCCCCCCEEECCCCcc
Confidence            47899999999653 445678888887763 443  22  2466777777776654  3433336666666666666666


Q ss_pred             CccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCc
Q 002167          151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS  230 (957)
Q Consensus       151 ~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~  230 (957)
                      + .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+.
T Consensus        74 ~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           74 Q-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             S-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTT
T ss_pred             C-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCCcCCccCHh
Confidence            6 55554433366666666666666555445555556666666665555532222222 555555555555555544444


Q ss_pred             ccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCc
Q 002167          231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ  310 (957)
Q Consensus       231 ~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  310 (957)
                      .|..+++|++|++++|+++                         +..+..+..+++|++|++++|.+++..+..+..+++
T Consensus       152 ~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLK-------------------------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCS-------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HccCCcccceeEecCCcCc-------------------------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            4455555555555555544                         333334444555555555555555444444555555


Q ss_pred             CceeeccCCcCC
Q 002167          311 LSFLGLAYNELI  322 (957)
Q Consensus       311 L~~L~L~~n~l~  322 (957)
                      |+.|++++|.+.
T Consensus       207 L~~L~l~~N~~~  218 (270)
T 2o6q_A          207 LKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCBC
T ss_pred             CCEEEecCCCee
Confidence            555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.5e-26  Score=276.81  Aligned_cols=133  Identities=16%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CCCCCcEEEccCCCCCCCCCcccC-CCCcccEEeccCC-CCccccchhHhhhccCCcEEECcCCcCCccCccccc----C
Q 002167          210 NITQLAYLDLSSNSFSGHIPSSFS-NLQQLCYLDLDDN-HFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS----N  283 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~----~  283 (957)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666666666655544444443 4566666666666 333222223333366777777776666544333332    4


Q ss_pred             cCCCcEEEeccCc--Ccc-cCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCC
Q 002167          284 LQQLLWLNLEYNN--FVG-KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSF  342 (957)
Q Consensus       284 l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  342 (957)
                      +++|++|++++|.  +.. .++..+..+++|++|++++|...+.++..+..+++|++|+++.
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            4566666666664  111 1111123346666666666632222445555566666666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.1e-23  Score=221.97  Aligned_cols=212  Identities=21%  Similarity=0.202  Sum_probs=146.6

Q ss_pred             cccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcc
Q 002167          593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR  672 (957)
Q Consensus       593 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~  672 (957)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444455555555555665555555444555555666666666666555555555566666666666


Q ss_pred             cccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhH
Q 002167          673 SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL  751 (957)
Q Consensus       673 ~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (957)
                      +|.+.+..+..  ...+++|+.|++++|++++. +|..+                                         
T Consensus       109 ~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~-----------------------------------------  145 (276)
T 2z62_A          109 ETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF-----------------------------------------  145 (276)
T ss_dssp             TSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG-----------------------------------------
T ss_pred             CCCccccCchh--cccCCCCCEEECcCCccceecCchhh-----------------------------------------
Confidence            66554433322  24566777777777777652 45331                                         


Q ss_pred             HHHhhcccceEEEcccCccCccCcccccccCCCc----EEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc
Q 002167          752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK----SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA  827 (957)
Q Consensus       752 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~  827 (957)
                         ..+++|+.|+|++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|++|++++|++++..+..+.
T Consensus       146 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          146 ---SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             ---GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTT
T ss_pred             ---ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhc
Confidence               1257888999999999988888888887777    8999999999776665554 4899999999999988777889


Q ss_pred             CCCCCCeEECccCcccccCCCCCC
Q 002167          828 SLNYLSVLNLSNNQLEGPIPGGPQ  851 (957)
Q Consensus       828 ~l~~L~~L~ls~N~l~g~ip~~~~  851 (957)
                      .+++|+.|++++|+++|.+|.-..
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~l~~  245 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPRIDY  245 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTTTHH
T ss_pred             ccccccEEEccCCcccccCCchHH
Confidence            999999999999999999986543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=6.4e-24  Score=245.57  Aligned_cols=222  Identities=21%  Similarity=0.185  Sum_probs=190.5

Q ss_pred             CCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEE
Q 002167          567 NCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL  645 (957)
Q Consensus       567 ~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  645 (957)
                      .+++|++|++++|.+++..|..+.. ++|++|+|++|.+++..|  +..+++|+.|+|++|.+++..     ..++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            3458999999999999887878866 999999999999997766  899999999999999998643     33899999


Q ss_pred             eCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCc
Q 002167          646 DVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV  725 (957)
Q Consensus       646 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~  725 (957)
                      ++++|.+++..+.   .+++|+.|++++|.+.+..+...  ..+++|+.|++++|.+++.+|..+..             
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------  166 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA-------------  166 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG-------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh-------------
Confidence            9999999987664   45889999999999988776554  56889999999999999987754311             


Q ss_pred             eecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhc
Q 002167          726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL  805 (957)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L  805 (957)
                                                    .+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++..| .+..+
T Consensus       167 ------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l  213 (487)
T 3oja_A          167 ------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSA  213 (487)
T ss_dssp             ------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred             ------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCC
Confidence                                          25789999999999998733  4469999999999999998555 59999


Q ss_pred             cCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc-ccCC
Q 002167          806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE-GPIP  847 (957)
Q Consensus       806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~ip  847 (957)
                      ++|+.|||++|++++ +|..+..+++|+.|++++|++. |.+|
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999999999999996 7888999999999999999998 4444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=7.2e-22  Score=210.38  Aligned_cols=207  Identities=28%  Similarity=0.316  Sum_probs=149.3

Q ss_pred             CCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167          571 LQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN  650 (957)
Q Consensus       571 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  650 (957)
                      .+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCC-ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            455666666655 3444332 45666777777666555556677777777777777776554455666777777777777


Q ss_pred             ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceeccc
Q 002167          651 QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM  730 (957)
Q Consensus       651 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~  730 (957)
                      ++++..+..+..+++|++|++++                          |++++..|..                     
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~--------------------------n~l~~~~~~~---------------------  128 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDR--------------------------NQLKSLPPRV---------------------  128 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCS--------------------------SCCCCCCTTT---------------------
T ss_pred             cCCcCCHhHcccccCCCEEECCC--------------------------CccCeeCHHH---------------------
Confidence            76665555555555554444444                          4444333211                     


Q ss_pred             ccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCE
Q 002167          731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES  810 (957)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~  810 (957)
                                             +..+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|..+++|++
T Consensus       129 -----------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          129 -----------------------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             -----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             -----------------------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                   011467888889999888877777899999999999999999988888999999999


Q ss_pred             EECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167          811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       811 L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                      |+|++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            999999999877778999999999999999999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=3.5e-23  Score=225.41  Aligned_cols=205  Identities=21%  Similarity=0.206  Sum_probs=129.7

Q ss_pred             ccEEECCCCcCCCCCcccc--ccCCCccEEEccCCcCccCCC----ccccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167          594 LQVLDMRMNNFSGSLPQTF--AKSCVLVSLNLNGNRLKGPLP----PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ  667 (957)
Q Consensus       594 L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  667 (957)
                      |++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4444444444444444443  444444444444444444332    2223444555555555555444444555555555


Q ss_pred             EEEccccccccc--CCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167          668 VLILRSNRFWGP--IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT  745 (957)
Q Consensus       668 ~L~L~~n~~~~~--~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (957)
                      +|++++|++.+.  ++.......+++|++|++++|+++.. |...                                   
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~-----------------------------------  216 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC-----------------------------------  216 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH-----------------------------------
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH-----------------------------------
Confidence            555555554332  11111123466777788888877531 2110                                   


Q ss_pred             EechhHHHHhhcccceEEEcccCccCccCccccccc---CCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccC
Q 002167          746 MKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL---NSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRI  822 (957)
Q Consensus       746 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i  822 (957)
                           ...+..+++|+.|||++|++++.+|+.++.+   ++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. 
T Consensus       217 -----~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-  287 (310)
T 4glp_A          217 -----AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-  287 (310)
T ss_dssp             -----HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred             -----HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence                 0012235789999999999999989888887   69999999999999 6788775  8999999999999974 


Q ss_pred             cccCcCCCCCCeEECccCcccc
Q 002167          823 PTQLASLNYLSVLNLSNNQLEG  844 (957)
Q Consensus       823 p~~l~~l~~L~~L~ls~N~l~g  844 (957)
                      |. +..+++|+.|++++|+++.
T Consensus       288 ~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ch-hhhCCCccEEECcCCCCCC
Confidence            43 6788999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.9e-22  Score=215.12  Aligned_cols=203  Identities=22%  Similarity=0.213  Sum_probs=129.4

Q ss_pred             CCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEe
Q 002167          567 NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD  646 (957)
Q Consensus       567 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  646 (957)
                      .+++|+.|++++|.+. .++.....++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3444444444444443 222211124444444444444431  2445555666666666666555555555666666666


Q ss_pred             CCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCce
Q 002167          647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVE  726 (957)
Q Consensus       647 ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~  726 (957)
                      +++|++++..+..+..+++|++|++++                          |++++..|..+                
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------------------n~l~~~~~~~~----------------  153 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAH--------------------------NQLQSLPKGVF----------------  153 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCS--------------------------SCCCCCCTTTT----------------
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCC--------------------------CccCccCHHHh----------------
Confidence            666666555544444444444444444                          43433222110                


Q ss_pred             ecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhcc
Q 002167          727 VGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLT  806 (957)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~  806 (957)
                                                  ..+++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..++.++
T Consensus       154 ----------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          154 ----------------------------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ----------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                                        1146678888888888887777888999999999999999998888899999


Q ss_pred             CCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167          807 ELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  849 (957)
                      +|++|++++|++.+..|       .|++++++.|+++|.||..
T Consensus       206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            99999999999987654       6888999999999999965

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.3e-21  Score=209.32  Aligned_cols=211  Identities=21%  Similarity=0.171  Sum_probs=109.4

Q ss_pred             CCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEE
Q 002167          472 LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYL  550 (957)
Q Consensus       472 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  550 (957)
                      +++++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.. .+|++|++++|++++..+..+..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            3456667777777776666666777777777777777766544433332 255555555555554444445555555555


Q ss_pred             EccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCcc
Q 002167          551 RLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG  630 (957)
Q Consensus       551 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  630 (957)
                      ++++|++.+..+..+..+++|++|++++|.+++.                      .+|..+..+++|+.|++++|++++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCc
Confidence            5555555544444444555555555555554431                      134444445555555555555544


Q ss_pred             CCCccccCCCCCc----EEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCC
Q 002167          631 PLPPSLVNCQYLE----VLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVL  706 (957)
Q Consensus       631 ~~p~~l~~l~~L~----~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~i  706 (957)
                      ..+..+..+++|+    .|++++|++++..+..+.. .+|+.|++++|++.+..+...  ..+++|+.|++++|++++..
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT--TTCCSCCEEECCSSCBCCCT
T ss_pred             CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh--cccccccEEEccCCcccccC
Confidence            4444444333333    4555555554433333322 245555555555443322221  34556666666666666655


Q ss_pred             c
Q 002167          707 P  707 (957)
Q Consensus       707 p  707 (957)
                      |
T Consensus       241 ~  241 (276)
T 2z62_A          241 P  241 (276)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3e-21  Score=207.39  Aligned_cols=206  Identities=24%  Similarity=0.268  Sum_probs=147.2

Q ss_pred             ccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcE
Q 002167          565 LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV  644 (957)
Q Consensus       565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  644 (957)
                      +.++++++++++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|+|++|.+++..+  ...+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            455666777777777766 4454332 567777777777776666677777777777777777765432  256667777


Q ss_pred             EeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCC
Q 002167          645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS  724 (957)
Q Consensus       645 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~  724 (957)
                      |++++|+++ .+|..+..+                          ++|+.|++++|++++..|..+              
T Consensus        82 L~Ls~N~l~-~l~~~~~~l--------------------------~~L~~L~l~~N~l~~l~~~~~--------------  120 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTL--------------------------PALTVLDVSFNRLTSLPLGAL--------------  120 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTC--------------------------TTCCEEECCSSCCCCCCSSTT--------------
T ss_pred             EECCCCcCC-cCchhhccC--------------------------CCCCEEECCCCcCcccCHHHH--------------
Confidence            777777665 334444444                          444555555555554333211              


Q ss_pred             ceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhh
Q 002167          725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRN  804 (957)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  804 (957)
                                                    ..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus       121 ------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  170 (290)
T 1p9a_G          121 ------------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (290)
T ss_dssp             ------------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             ------------------------------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence                                          12467888888888888877778889999999999999999777777889


Q ss_pred             ccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccC
Q 002167          805 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI  846 (957)
Q Consensus       805 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  846 (957)
                      +++|++|+|++|+++ .+|..+..+..|+.+++++|++.+.+
T Consensus       171 l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            999999999999998 68888888889999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.9e-21  Score=207.37  Aligned_cols=212  Identities=23%  Similarity=0.316  Sum_probs=162.3

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      .+..+++|+.|++++|.+..  ++ .+ ..+++|++|++++|.+.+ ++ .+.. +++|++|++++|.+++..+..+.++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--~~-~l-~~l~~L~~L~l~~n~l~~-~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVRYLALGGNKLHD-IS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKL  108 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECTTSCCCC-CG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccceeeeeeCCCCccc--cc-cc-ccCCCCcEEECCCCCCCC-ch-hhcC-CCCCCEEECCCCccCccChhHhcCC
Confidence            45677888888888888754  22 34 778888888888888874 43 5665 8888888888888887777778888


Q ss_pred             CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167          187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL  266 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L  266 (957)
                      ++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..++++++|++|++++|+++ .++......+++|++|
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEE
Confidence            8888888888888744444344 7888888888888888777777788888888888888887 4444443348888888


Q ss_pred             ECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC
Q 002167          267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN  334 (957)
Q Consensus       267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  334 (957)
                      ++++|.+++..+..+..+++|++|++++|.+.+.       +++|+.++++.|.++|.+|.+++.+..
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            8888888877777788888888888888877643       456788888888888888887766544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=9e-23  Score=225.28  Aligned_cols=263  Identities=17%  Similarity=0.180  Sum_probs=204.1

Q ss_pred             CCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCC--CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCC
Q 002167           71 ADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFL--PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC  148 (957)
Q Consensus        71 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n  148 (957)
                      .-|..|.++.|+.  ..++.++++++.+.+.     .+..+  +++++|++++|.+.+.  +..+ ..+++|++|++++|
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~-~~~~~L~~L~L~~~  103 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEH-FSPFRVQHMDLSNS  103 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSC-CCCBCCCEEECTTC
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhh-ccCCCCCEEEccCC
Confidence            3466899998863  4578899999877632     45556  8999999999998764  3335 57899999999999


Q ss_pred             ccCcc-CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCC-cCCCC-CchhhhhCCCCCcEEEccCC-CC
Q 002167          149 NFTGS-IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN-NFVGK-IPASLGNNITQLAYLDLSSN-SF  224 (957)
Q Consensus       149 ~l~~~-ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~~l~~L~~L~Ls~n-~l  224 (957)
                      .+.+. +|..+.. +++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+. ++++|++|++++| .+
T Consensus       104 ~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          104 VIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDF  181 (336)
T ss_dssp             EECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTC
T ss_pred             CcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCc
Confidence            98865 7766666 999999999999998888889999999999999999 67653 455455 8999999999999 88


Q ss_pred             CCC-CCcccCCCC-cccEEeccCC--CCc-cccchhHhhhccCCcEEECcCCc-CCccCcccccCcCCCcEEEeccCc-C
Q 002167          225 SGH-IPSSFSNLQ-QLCYLDLDDN--HFV-GEIPASLGNNITQLAYLDLSSNG-FSGHIPSSFSNLQQLLWLNLEYNN-F  297 (957)
Q Consensus       225 ~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~ip~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l  297 (957)
                      ++. ++..+..++ +|++|++++|  .++ +.+|..+.. +++|++|++++|. +++..+..+..+++|++|++++|. +
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence            754 566788889 9999999999  455 456665555 9999999999998 777777888999999999999985 3


Q ss_pred             cccCCccccccCcCceeeccCCcCCCCCCcchhcc-cCCceEecCCCCCccccc
Q 002167          298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL-LNLTEIYLSFSNFSGSVE  350 (957)
Q Consensus       298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~  350 (957)
                      .......+..+++|++|++++| ++.   ..+..+ ..++.|++++|.+++..+
T Consensus       261 ~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          261 IPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccC
Confidence            3222235778899999999988 332   233444 347777788888876544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.6e-23  Score=228.44  Aligned_cols=260  Identities=17%  Similarity=0.173  Sum_probs=139.3

Q ss_pred             eecccccccCcCCCcCCCCCCccEEEccCCcCCCCCC----ccccCCC-CCCeEEcCCCccccccCccccC------Ccc
Q 002167          526 LDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP----PSLTNCV-KLQFLDVGNNNLSGQIPECLGN------STL  594 (957)
Q Consensus       526 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~------~~L  594 (957)
                      +.++.|.+++.+|..+....+|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..      ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555444444445555555555554444    4444454 4555555555554433332221      344


Q ss_pred             cEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCC-CCCcEEeCCCCccccCccccccc-----cccccE
Q 002167          595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNC-QYLEVLDVGNNQIDDTFPYWLDV-----LLELQV  668 (957)
Q Consensus       595 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~p~~l~~-----l~~L~~  668 (957)
                      ++|++++|.+++..+..+...                    +..+ ++|++|++++|++++..+..+..     .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence            555555554444333322211                    2222 44555555555544443333222     134555


Q ss_pred             EEcccccccccCCCCC--CccCC-CCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167          669 LILRSNRFWGPIGDTK--TRVPF-PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT  745 (957)
Q Consensus       669 L~L~~n~~~~~~~~~~--~~~~l-~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (957)
                      |++++|.+.+......  ....+ ++|+.|++++|++++..+..+...+.                              
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------  192 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------  192 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------
Confidence            5555554432111000  00112 26777777777777665543321111                              


Q ss_pred             EechhHHHHhhc-ccceEEEcccCccCcc----Ccccccc-cCCCcEEECCCCcCCCCCchh----hhhccCCCEEECCC
Q 002167          746 MKGIDLQMERIL-TTFATIDLSSNRFQRK----IPEVVGK-LNSLKSLNISHNNLTGCIPSS----LRNLTELESLDLSS  815 (957)
Q Consensus       746 ~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~----l~~L~~L~~L~Ls~  815 (957)
                                .. ++|+.|||++|.+++.    ++..+.. .++|+.|||++|.+++..+..    +..+++|++|+|++
T Consensus       193 ----------~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          193 ----------SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             ----------TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             ----------hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence                      12 4678888888888763    4455555 358888888888888765543    34567888888888


Q ss_pred             CcccccC-------cccCcCCCCCCeEECccCccccc
Q 002167          816 NKLAGRI-------PTQLASLNYLSVLNLSNNQLEGP  845 (957)
Q Consensus       816 N~l~g~i-------p~~l~~l~~L~~L~ls~N~l~g~  845 (957)
                      |++.+..       +..+..+++|++||+++|++.+.
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8854433       34667788888888888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5.8e-23  Score=228.86  Aligned_cols=175  Identities=25%  Similarity=0.247  Sum_probs=135.9

Q ss_pred             EEEcccCcCccCCCcccccc-ccceeecccccccCcCC----CcCCCCC-CccEEEccCCcCCCCCCccccCC-----CC
Q 002167          502 YLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIP----QTNAKGC-KLTYLRLSGNHLEGPLPPSLTNC-----VK  570 (957)
Q Consensus       502 ~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~  570 (957)
                      .++++.|.+++.+|.....+ +|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999999888777 59999999999998776    6777788 89999999999998888777775     99


Q ss_pred             CCeEEcCCCccccccCcccc-----C-CcccEEECCCCcCCCCCccccc----c-CCCccEEEccCCcCccCCC----cc
Q 002167          571 LQFLDVGNNNLSGQIPECLG-----N-STLQVLDMRMNNFSGSLPQTFA----K-SCVLVSLNLNGNRLKGPLP----PS  635 (957)
Q Consensus       571 L~~L~Ls~n~l~~~~p~~~~-----~-~~L~~L~Ls~n~l~~~~p~~~~----~-l~~L~~L~Ls~n~l~~~~p----~~  635 (957)
                      |++|++++|.+++..+..+.     . ++|++|++++|.+++..+..+.    . .++|++|+|++|.+++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999876665332     2 6899999999999877665543    3 3589999999998886443    33


Q ss_pred             ccCCC-CCcEEeCCCCccccCcccccccc-----ccccEEEcccccc
Q 002167          636 LVNCQ-YLEVLDVGNNQIDDTFPYWLDVL-----LELQVLILRSNRF  676 (957)
Q Consensus       636 l~~l~-~L~~L~ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~~  676 (957)
                      +..++ +|++|++++|++++..+..+...     ++|++|+|++|.+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            45555 88889999888887766554432     3555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=9.2e-21  Score=203.53  Aligned_cols=202  Identities=24%  Similarity=0.298  Sum_probs=103.7

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      +++++++.++++++.++ .+|..+.   +++++|+|++|.+++..+..|.++++|++|++++|.+++ ++.. . .+++|
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~-~l~~L   79 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-G-TLPVL   79 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-S-CCTTC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-C-CCCcC
Confidence            34444444444444444 4444332   244455555555444444445555555555555554442 2221 1 44555


Q ss_pred             cEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167          215 AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY  294 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  294 (957)
                      ++|++++|.++ .+|..+..+++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            55555555554 34444555555555555555555 33322222255555555555555544444455555666666666


Q ss_pred             CcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCc
Q 002167          295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFS  346 (957)
Q Consensus       295 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  346 (957)
                      |++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6665444445555666666666666665 45555555666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=7.7e-21  Score=200.01  Aligned_cols=121  Identities=24%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++|+
T Consensus       106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            35667777777777776667778889999999999999988887899999999999999999988888899999999999


Q ss_pred             CccCcccccCCCCCCCCccc------CCcccCCcCCCCCCCCCCCCCC
Q 002167          837 LSNNQLEGPIPGGPQFNTFG------NDSYSGNSGLCGFPLSKSCSID  878 (957)
Q Consensus       837 ls~N~l~g~ip~~~~~~~~~------~~~~~gn~~lcg~~~~~~c~~~  878 (957)
                      +++|+++|..+....+..|.      .....|+ .+|+.|....|..+
T Consensus       186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            99999998755432222221      0111233 35666666677653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=2.2e-22  Score=222.09  Aligned_cols=250  Identities=18%  Similarity=0.183  Sum_probs=167.3

Q ss_pred             ccEEEccCCcCCCCCCccccCC--CCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCC-CccccccCCCccEEEc
Q 002167          547 LTYLRLSGNHLEGPLPPSLTNC--VKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSCVLVSLNL  623 (957)
Q Consensus       547 L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L  623 (957)
                      ++.+++++|.+.   +..+..+  ++++.|++++|.+.+..+.....++|++|++++|.+++. ++..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            556666666554   3445555  666777777777666665554446677777777776654 5666667777777777


Q ss_pred             cCCcCccCCCccccCCCCCcEEeCCCC-ccccC-ccccccccccccEEEcccc-ccccc-CCCCCCccCCC-CceEEEcC
Q 002167          624 NGNRLKGPLPPSLVNCQYLEVLDVGNN-QIDDT-FPYWLDVLLELQVLILRSN-RFWGP-IGDTKTRVPFP-KLRIMDCS  698 (957)
Q Consensus       624 s~n~l~~~~p~~l~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~l~-~L~~Ldls  698 (957)
                      ++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..  ...++ +|+.|+++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l~  203 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNLS  203 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEECC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEeC
Confidence            777776666666777777777777777 55542 5555667777777777777 55432 1111  13456 77777777


Q ss_pred             CC--cCc-CCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCc-cCccC
Q 002167          699 HN--QLT-GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNR-FQRKI  774 (957)
Q Consensus       699 ~N--~l~-g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~i  774 (957)
                      +|  .++ +.+|..                                            ...+++|+.|++++|. +++..
T Consensus       204 ~~~~~~~~~~l~~~--------------------------------------------~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          204 GYRKNLQKSDLSTL--------------------------------------------VRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             SCGGGSCHHHHHHH--------------------------------------------HHHCTTCSEEECTTCTTCCGGG
T ss_pred             CCcccCCHHHHHHH--------------------------------------------HhhCCCCCEEeCCCCCcCCHHH
Confidence            77  343 222211                                            2236789999999999 78888


Q ss_pred             cccccccCCCcEEECCCCc-CCCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCCCC
Q 002167          775 PEVVGKLNSLKSLNISHNN-LTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPGG  849 (957)
Q Consensus       775 p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~  849 (957)
                      +..++.+++|+.|+|++|. ++......++++++|++|++++| ++.   ..+..+ ..|..|++++|+++|..|..
T Consensus       240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            8899999999999999995 33222236888999999999999 332   233334 24777789999999988854

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.6e-22  Score=227.75  Aligned_cols=196  Identities=20%  Similarity=0.189  Sum_probs=125.4

Q ss_pred             ccCCCccEEEccCCcCcc----CCCccccCCCCCcEEeCCCCccccCcccccc----cc---------ccccEEEccccc
Q 002167          613 AKSCVLVSLNLNGNRLKG----PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLD----VL---------LELQVLILRSNR  675 (957)
Q Consensus       613 ~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~  675 (957)
                      ..+++|++|+|++|.+++    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455556666666665554    2444555566666666666665433332222    22         566666666666


Q ss_pred             cc-ccCCCC-CCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHH
Q 002167          676 FW-GPIGDT-KTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQM  753 (957)
Q Consensus       676 ~~-~~~~~~-~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (957)
                      +. +.++.. .....+++|+.|++++|+++..--.....                                       ..
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~---------------------------------------~~  211 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EG  211 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TT
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH---------------------------------------HH
Confidence            54 122110 01123556777777777765210000000                                       01


Q ss_pred             HhhcccceEEEcccCccC----ccCcccccccCCCcEEECCCCcCCCC----Cchhhhh--ccCCCEEECCCCcccc---
Q 002167          754 ERILTTFATIDLSSNRFQ----RKIPEVVGKLNSLKSLNISHNNLTGC----IPSSLRN--LTELESLDLSSNKLAG---  820 (957)
Q Consensus       754 ~~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~--L~~L~~L~Ls~N~l~g---  820 (957)
                      ...+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|++|+|++|++++   
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~  291 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  291 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence            112577888999999886    67888888899999999999999876    6666744  8899999999999988   


Q ss_pred             -cCcccC-cCCCCCCeEECccCcccccCC
Q 002167          821 -RIPTQL-ASLNYLSVLNLSNNQLEGPIP  847 (957)
Q Consensus       821 -~ip~~l-~~l~~L~~L~ls~N~l~g~ip  847 (957)
                       .+|..+ .++++|++|++++|++++..|
T Consensus       292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          292 RTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             588777 668999999999999987764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.8e-20  Score=201.35  Aligned_cols=225  Identities=17%  Similarity=0.168  Sum_probs=158.0

Q ss_pred             CCCCcEEECCCCccCccCch---hhhhcCCCCCEEEccCCcCCCCcchhc--cCCCCCCEEEccCCcCCCCCc----hhh
Q 002167          137 FPSLTLLDLCSCNFTGSIPP---SLGNNITQLAYLDLSINSFIGHIPSSF--SNLHQLRHLDLQSNNFVGKIP----ASL  207 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l  207 (957)
                      ...++.+.+.++.+....-.   .... +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34567777777766522111   1122 5678888888888888877777  788888888888888876544    233


Q ss_pred             hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccc--cchhH-hhhccCCcEEECcCCcCCccCcc----c
Q 002167          208 GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE--IPASL-GNNITQLAYLDLSSNGFSGHIPS----S  280 (957)
Q Consensus       208 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip~~l-~~~l~~L~~L~Ls~n~l~~~~p~----~  280 (957)
                      . .+++|++|++++|.+++..|..++++++|++|++++|++.+.  ++... ...+++|++|++++|.++. ++.    .
T Consensus       142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred             h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence            4 678888888888888877778888888888888888887643  22221 1237788888888888862 222    2


Q ss_pred             ccCcCCCcEEEeccCcCcccCCcccccc---CcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcC
Q 002167          281 FSNLQQLLWLNLEYNNFVGKIPDMFTNL---TQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKL  357 (957)
Q Consensus       281 l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  357 (957)
                      +..+++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|.+++. +  .+..+
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~--~~~~l  293 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P--QPDEL  293 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C--CTTSC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c--hhhhC
Confidence            4677888888888888887767666666   58888888888887 5666654  6788888888887743 1  14566


Q ss_pred             CCCcEEEcccccc
Q 002167          358 KNLKVLSLSNISL  370 (957)
Q Consensus       358 ~~L~~L~L~~~~~  370 (957)
                      ++|+.|++++|.+
T Consensus       294 ~~L~~L~L~~N~l  306 (310)
T 4glp_A          294 PEVDNLTLDGNPF  306 (310)
T ss_dssp             CCCSCEECSSTTT
T ss_pred             CCccEEECcCCCC
Confidence            7777777777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=3.9e-20  Score=193.17  Aligned_cols=197  Identities=17%  Similarity=0.150  Sum_probs=130.5

Q ss_pred             CcccEEECCCCcCCCCCccccccCCCccEEEccCCc-CccCCCccccCCCCCcEEeCCC-CccccCccccccccccccEE
Q 002167          592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNR-LKGPLPPSLVNCQYLEVLDVGN-NQIDDTFPYWLDVLLELQVL  669 (957)
Q Consensus       592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L  669 (957)
                      ++|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            356667777776666555566777777777777775 6655555677777777777776 77776666667777777777


Q ss_pred             EcccccccccCCCCCCccCCCCce---EEEcCCC-cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167          670 ILRSNRFWGPIGDTKTRVPFPKLR---IMDCSHN-QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT  745 (957)
Q Consensus       670 ~L~~n~~~~~~~~~~~~~~l~~L~---~Ldls~N-~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (957)
                      ++++|++.+ +|.   ...+++|+   .|++++| ++++..+..                                    
T Consensus       111 ~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~------------------------------------  150 (239)
T 2xwt_C          111 GIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPVNA------------------------------------  150 (239)
T ss_dssp             EEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECTTT------------------------------------
T ss_pred             eCCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCccc------------------------------------
Confidence            777777655 333   23344444   7777777 665433311                                    


Q ss_pred             EechhHHHHhhcccce-EEEcccCccCccCcccccccCCCcEEECCCCc-CCCCCchhhhhc-cCCCEEECCCCcccccC
Q 002167          746 MKGIDLQMERILTTFA-TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN-LTGCIPSSLRNL-TELESLDLSSNKLAGRI  822 (957)
Q Consensus       746 ~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L-~~L~~L~Ls~N~l~g~i  822 (957)
                              +..++.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|++||+++|++++ +
T Consensus       151 --------~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          151 --------FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             --------TTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             --------ccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence                    11246677 7888888887 444443333778888888884 776666778888 888888888888875 3


Q ss_pred             cccCcCCCCCCeEECccC
Q 002167          823 PTQLASLNYLSVLNLSNN  840 (957)
Q Consensus       823 p~~l~~l~~L~~L~ls~N  840 (957)
                      |..  .+++|+.|+++++
T Consensus       221 ~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCT--TCTTCSEEECTTC
T ss_pred             Chh--HhccCceeeccCc
Confidence            433  5667778877765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=2.8e-21  Score=217.51  Aligned_cols=238  Identities=21%  Similarity=0.263  Sum_probs=104.0

Q ss_pred             CccCCCCCCeeeCCCCCCCCCC---CCchhhcCCCCCcEEECCCC---ccCccCchhhh------hcCCCCCEEEccCCc
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSK---ISSGFTDQFPSLTLLDLCSC---NFTGSIPPSLG------NNITQLAYLDLSINS  174 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~---i~~~~~~~l~~L~~L~Ls~n---~l~~~ip~~l~------~~l~~L~~L~Ls~n~  174 (957)
                      .+..+++|++|+|++|.+++..   ++..+ ..+++|++|+|++|   ++.+.+|..+.      ..+++|++|+|++|.
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3445555666666665554321   01112 45555666666553   33334444331      125555555555555


Q ss_pred             CCC----CcchhccCCCCCCEEEccCCcCCCCCchhhhh---CC---------CCCcEEEccCCCCC-CCCC---cccCC
Q 002167          175 FIG----HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN---NI---------TQLAYLDLSSNSFS-GHIP---SSFSN  234 (957)
Q Consensus       175 l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---~l---------~~L~~L~Ls~n~l~-~~~p---~~l~~  234 (957)
                      +.+    .+|..+.++++|++|+|++|.+.+..+..+..   .+         ++|++|++++|.++ +.+|   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            554    24445555555555555555553222222221   11         45555555555544 1222   23334


Q ss_pred             CCcccEEeccCCCCccc-----cchhHhhhccCCcEEECcCCcCC----ccCcccccCcCCCcEEEeccCcCccc----C
Q 002167          235 LQQLCYLDLDDNHFVGE-----IPASLGNNITQLAYLDLSSNGFS----GHIPSSFSNLQQLLWLNLEYNNFVGK----I  301 (957)
Q Consensus       235 l~~L~~L~Ls~n~l~~~-----ip~~l~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~----~  301 (957)
                      +++|++|++++|+++..     +|..+.. +++|++|++++|.++    ..+|..+..+++|++|+|++|.+.+.    +
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            44555555555544311     1112222 444555555555443    23344444444444444444444432    2


Q ss_pred             Ccccc--ccCcCceeeccCCcCCC----CCCcch-hcccCCceEecCCCCCc
Q 002167          302 PDMFT--NLTQLSFLGLAYNELIG----SIPSSI-FELLNLTEIYLSFSNFS  346 (957)
Q Consensus       302 p~~l~--~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~L~~n~l~  346 (957)
                      +..+.  .+++|++|++++|.+++    .+|..+ .++++|++|++++|.++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            23331  14444444444444443    233333 22344444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.2e-19  Score=196.94  Aligned_cols=195  Identities=23%  Similarity=0.372  Sum_probs=131.4

Q ss_pred             ccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcE
Q 002167          565 LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV  644 (957)
Q Consensus       565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  644 (957)
                      ...+++|++|++++|.+. .+|.....++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            345666777777777665 34432223666666666666664333  56666666666666666542  24555566666


Q ss_pred             EeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCC
Q 002167          645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS  724 (957)
Q Consensus       645 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~  724 (957)
                      |++++|++++..+  +.                          .+++|+.|++++|++++..+.                
T Consensus       112 L~l~~n~l~~~~~--l~--------------------------~l~~L~~L~l~~n~l~~~~~l----------------  147 (308)
T 1h6u_A          112 LDLTSTQITDVTP--LA--------------------------GLSNLQVLYLDLNQITNISPL----------------  147 (308)
T ss_dssp             EECTTSCCCCCGG--GT--------------------------TCTTCCEEECCSSCCCCCGGG----------------
T ss_pred             EECCCCCCCCchh--hc--------------------------CCCCCCEEECCCCccCcCccc----------------
Confidence            6666665554321  33                          345566666666666543320                


Q ss_pred             ceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhh
Q 002167          725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRN  804 (957)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  804 (957)
                                                    ..+++|+.|++++|++++..+  ++.+++|+.|+|++|++++..+  +..
T Consensus       148 ------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~  193 (308)
T 1h6u_A          148 ------------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LAS  193 (308)
T ss_dssp             ------------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred             ------------------------------cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcC
Confidence                                          114678888899888887544  8889999999999999987654  888


Q ss_pred             ccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccc
Q 002167          805 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG  844 (957)
Q Consensus       805 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  844 (957)
                      +++|++|++++|++++..|  +..+++|++|++++|++++
T Consensus       194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            9999999999999987654  7889999999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=4e-19  Score=186.87  Aligned_cols=175  Identities=23%  Similarity=0.247  Sum_probs=92.1

Q ss_pred             CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167          499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN  578 (957)
Q Consensus       499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  578 (957)
                      ..++++++++.++ .+|..+. ..++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            3455666666665 3443332 2555555555555555555555556666666666666655555555566666666666


Q ss_pred             CccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167          579 NNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP  657 (957)
Q Consensus       579 n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  657 (957)
                      |++++..+..+.. ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            6555444444433 555555555555554444445555555555555555554444445555555555555555554444


Q ss_pred             ccccccccccEEEccccc
Q 002167          658 YWLDVLLELQVLILRSNR  675 (957)
Q Consensus       658 ~~l~~l~~L~~L~L~~n~  675 (957)
                      ..+..+++|++|++++|+
T Consensus       173 ~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTTCTTCCEEECCSCC
T ss_pred             HHHhCCCCCCEEEeeCCc
Confidence            444444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2.2e-19  Score=194.78  Aligned_cols=194  Identities=23%  Similarity=0.361  Sum_probs=100.6

Q ss_pred             ccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCC
Q 002167          108 LFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH  187 (957)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  187 (957)
                      ...+++|++|++++|.+..  ++ .+ ..+++|++|++++|.+. .++. +.. +++|++|++++|.+.+. + .+..++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~-~~l~~L~~L~L~~n~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~-~~~~l~  107 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GV-QYLNNLIGLELKDNQIT-DLAP-LKN-LTKITELELSGNPLKNV-S-AIAGLQ  107 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECCSSCCC-CCGG-GTT-CCSCCEEECCSCCCSCC-G-GGTTCT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hh-hccCCCCEEEccCCcCC-CChh-Hcc-CCCCCEEEccCCcCCCc-h-hhcCCC
Confidence            3445666666666666543  23 23 55666666666666665 3444 443 66666666666665532 2 355566


Q ss_pred             CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167          188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD  267 (957)
Q Consensus       188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  267 (957)
                      +|++|++++|.+.+ ++. +. .+++|++|++++|.+++..+  ++.+++|++|++++|+++ .++. +.. +++|++|+
T Consensus       108 ~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~  179 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LAN-LSKLTTLK  179 (308)
T ss_dssp             TCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEE
T ss_pred             CCCEEECCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh-hcC-CCCCCEEE
Confidence            66666666665553 332 33 55556666666555554322  555555555555555554 2332 222 55555555


Q ss_pred             CcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC
Q 002167          268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      +++|.+++..+  +..+++|++|++++|.+.+..  .+..+++|++|++++|.++
T Consensus       180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            55555543222  445555555555555554332  1444555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=2.6e-19  Score=186.83  Aligned_cols=183  Identities=20%  Similarity=0.259  Sum_probs=102.1

Q ss_pred             CCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCc-CccCCCccccc-cccceeeccc-ccccCcCCCcCCCCC
Q 002167          469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS-LSGQIPQCLGN-STLETLDLRM-NNFQGSIPQTNAKGC  545 (957)
Q Consensus       469 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~l~  545 (957)
                      +|..+++++.|++++|.+++..+..|..+++|++|++++|. +++..+..+.. .+|++|++++ |++++..+..+..++
T Consensus        26 ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           26 IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             CCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             cCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            34455677788888888777666677778888888888886 66444434432 3666666665 566555555555556


Q ss_pred             CccEEEccCCcCCCCCCccccCCCCCC---eEEcCCC-ccccccCccccC-Cccc-EEECCCCcCCCCCccccccCCCcc
Q 002167          546 KLTYLRLSGNHLEGPLPPSLTNCVKLQ---FLDVGNN-NLSGQIPECLGN-STLQ-VLDMRMNNFSGSLPQTFAKSCVLV  619 (957)
Q Consensus       546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~-~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~  619 (957)
                      +|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..+.. ++|+ +|++++|+++...+..|.. ++|+
T Consensus       106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD  182 (239)
T ss_dssp             TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred             CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence            66666666666554 333 55555555   5555555 555433333333 5555 5555555555222222222 4555


Q ss_pred             EEEccCCc-CccCCCccccCC-CCCcEEeCCCCcccc
Q 002167          620 SLNLNGNR-LKGPLPPSLVNC-QYLEVLDVGNNQIDD  654 (957)
Q Consensus       620 ~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~ls~n~l~~  654 (957)
                      .|++++|+ +++..+..|.++ ++|+.|++++|++++
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            55555553 544434445555 555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=5.9e-20  Score=213.68  Aligned_cols=209  Identities=22%  Similarity=0.340  Sum_probs=143.1

Q ss_pred             ccCCCCCCCCCc-----cccce-EecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcC
Q 002167           63 KMMSWKEDADCC-----SWDGV-TCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQ  136 (957)
Q Consensus        63 ~l~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~  136 (957)
                      .+.+|..+.++|     .|.|+ .|..  ++++.|+|+++++.+ +|.  .+  +++|++|+|++|.++.  +|    ..
T Consensus        32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip----~~   98 (571)
T 3cvr_A           32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP----EL   98 (571)
T ss_dssp             HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC----CC
T ss_pred             HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc----cc
Confidence            355776666777     79999 6863  578899999998886 665  33  3778888888888863  55    23


Q ss_pred             CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      +++|++|++++|.+++ +|. +..   +|++|+|++|.+++ +|.   .+++|++|++++|.+++ +|.    .+++|++
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~  164 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEV  164 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCE
Confidence            6788888888888874 776 432   78888888888776 554   57778888888887774 564    4577788


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCC-------cEEECcCCcCCccCcccccCcCCCcE
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL-------AYLDLSSNGFSGHIPSSFSNLQQLLW  289 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~  289 (957)
                      |++++|.+++ +|. |.  ++|++|++++|+++ .+|. +..   +|       +.|++++|.++ .+|..+..+++|++
T Consensus       165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~  234 (571)
T 3cvr_A          165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT  234 (571)
T ss_dssp             EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred             EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence            8888887775 555 54  77777777777776 6665 322   44       66666666666 45555555666666


Q ss_pred             EEeccCcCcccCCcccccc
Q 002167          290 LNLEYNNFVGKIPDMFTNL  308 (957)
Q Consensus       290 L~L~~n~l~~~~p~~l~~l  308 (957)
                      |++++|.+++.+|..+..+
T Consensus       235 L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          235 IILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             EECCSSSCCHHHHHHHHHH
T ss_pred             EEeeCCcCCCcCHHHHHHh
Confidence            6666666665555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3e-19  Score=207.69  Aligned_cols=188  Identities=28%  Similarity=0.381  Sum_probs=139.6

Q ss_pred             CCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167          570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN  649 (957)
Q Consensus       570 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  649 (957)
                      +|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+|   ..+++|+.|+|++|++++ +|. +.+  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            89999999999986 776553 68999999999988 566   457889999999999987 666 655  889999999


Q ss_pred             CccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecc
Q 002167          650 NQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY  729 (957)
Q Consensus       650 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~  729 (957)
                      |++++ +|.   .+++|+.|++++|.+.+ +|.     .+++|+.|++++|++++ +|. +                   
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l-------------------  178 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L-------------------  178 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C-------------------
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h-------------------
Confidence            98887 554   57888888888888765 443     35678888888888776 442 1                   


Q ss_pred             cccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCC-------cEEECCCCcCCCCCchhh
Q 002167          730 MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL-------KSLNISHNNLTGCIPSSL  802 (957)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l  802 (957)
                                                 .++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+++ .+|..+
T Consensus       179 ---------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          179 ---------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ---------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ---------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence                                       145677788888877 5565 554  66       77888888777 467777


Q ss_pred             hhccCCCEEECCCCcccccCcccCcCCC
Q 002167          803 RNLTELESLDLSSNKLAGRIPTQLASLN  830 (957)
Q Consensus       803 ~~L~~L~~L~Ls~N~l~g~ip~~l~~l~  830 (957)
                      ..+++|++|+|++|++++.+|..+..++
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            7778888888888888777777766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5.7e-19  Score=179.99  Aligned_cols=183  Identities=29%  Similarity=0.399  Sum_probs=115.4

Q ss_pred             ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc
Q 002167           74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS  153 (957)
Q Consensus        74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~  153 (957)
                      |.|.+|.|...            ++. .+|.    ...++|++|++++|.+.+  ++...|..+++|++|++++|+++ .
T Consensus         7 C~~~~v~c~~~------------~l~-~~p~----~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~-~   66 (208)
T 2o6s_A            7 CSGTTVECYSQ------------GRT-SVPT----GIPAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQ-S   66 (208)
T ss_dssp             EETTEEECCSS------------CCS-SCCS----CCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCC-C
T ss_pred             ECCCEEEecCC------------Ccc-CCCC----CCCCCCcEEEcCCCccCc--CChhhhcccccCcEEECCCCccC-c
Confidence            78999999653            111 2222    224577788888887764  45544477777777777777777 5


Q ss_pred             CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccC
Q 002167          154 IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFS  233 (957)
Q Consensus       154 ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~  233 (957)
                      +|...+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ++...+.++++|++|++++|.+++..+..+.
T Consensus        67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  145 (208)
T 2o6s_A           67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD  145 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence            555443337777777777777776655556777777777777777763 3333323667777777777777655555566


Q ss_pred             CCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcC
Q 002167          234 NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQ  285 (957)
Q Consensus       234 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  285 (957)
                      ++++|++|++++|.+.+.        +++|++|+++.|.++|.+|..++.++
T Consensus       146 ~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             cCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCCceeeccCcccc
Confidence            666677777666665532        34555666666666666665555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=3.7e-19  Score=197.00  Aligned_cols=244  Identities=22%  Similarity=0.216  Sum_probs=169.8

Q ss_pred             ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc
Q 002167           74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS  153 (957)
Q Consensus        74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~  153 (957)
                      |.|..|.|..            ++++ .+|.  .+  .+++++|+|++|.++.  +|+..|.++++|++|+|++|.+.+.
T Consensus         9 C~~~~v~C~~------------~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~   69 (350)
T 4ay9_X            9 CSNRVFLCQE------------SKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEV   69 (350)
T ss_dssp             EETTEEEEES------------TTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred             eeCCEEEecC------------CCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCc
Confidence            6677777753            2333 3444  23  3678999999999864  7776668899999999999998777


Q ss_pred             CchhhhhcCCCCCE-EEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC-CCCCCCCCcc
Q 002167          154 IPPSLGNNITQLAY-LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS-NSFSGHIPSS  231 (957)
Q Consensus       154 ip~~l~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~-n~l~~~~p~~  231 (957)
                      +|...+.+++++++ +.+++|+++...|..|.++++|++|++++|.+....+..+. ...++..|++.+ +.+....+..
T Consensus        70 i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~  148 (350)
T 4ay9_X           70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNS  148 (350)
T ss_dssp             ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTS
T ss_pred             cChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccc
Confidence            88766555887765 66677888877788889999999999999988743333333 667788888865 4566555556


Q ss_pred             cCCCC-cccEEeccCCCCccccchhHhhhccCCcEEECcC-CcCCccCcccccCcCCCcEEEeccCcCcccCCccccccC
Q 002167          232 FSNLQ-QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS-NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT  309 (957)
Q Consensus       232 l~~l~-~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  309 (957)
                      |..+. .+++|++++|+++ .+|..++. ..+|++|++++ |.++...+..|..+++|++|++++|+++...+..+.+++
T Consensus       149 f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  226 (350)
T ss_dssp             STTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             hhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence            66664 6888889988887 77777766 67888888875 455533334678888888888888888865554454444


Q ss_pred             cCceeeccCCcCCCCCCcchhcccCCceEecCCC
Q 002167          310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFS  343 (957)
Q Consensus       310 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  343 (957)
                         .|.+.++.-...+|. +..+++|+.+++.++
T Consensus       227 ---~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          227 ---KLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             ---EEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             ---HhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence               444433332335553 666777777776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=3.6e-18  Score=189.00  Aligned_cols=243  Identities=17%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             ceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCcc-ccC-Cccc-EEECC
Q 002167          524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC-LGN-STLQ-VLDMR  600 (957)
Q Consensus       524 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~-~~L~-~L~Ls  600 (957)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|.. +.. ++++ .+.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            44555555555 344433  245666666666666444445666666666666666655444432 222 3332 23444


Q ss_pred             CCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccC
Q 002167          601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI  680 (957)
Q Consensus       601 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~  680 (957)
                      .|++++..|..|..+++|++|++++|+++                        ...+..+....++..|++.++.....+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS------------------------SCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             CCcccccCchhhhhccccccccccccccc------------------------cCCchhhcccchhhhhhhccccccccc
Confidence            44555444444555555555555555554                        433333334444444444443222222


Q ss_pred             CCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccc
Q 002167          681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTF  760 (957)
Q Consensus       681 ~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  760 (957)
                      +..........++.|++++|+++...+ ..+                                            ....+
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f--------------------------------------------~~~~L  179 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHN-SAF--------------------------------------------NGTQL  179 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECT-TSS--------------------------------------------TTEEE
T ss_pred             cccchhhcchhhhhhccccccccCCCh-hhc--------------------------------------------cccch
Confidence            222111112346677777777764222 110                                            02456


Q ss_pred             eEEEcccCccCccCc-ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECcc
Q 002167          761 ATIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN  839 (957)
Q Consensus       761 ~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~  839 (957)
                      +.|++++|+..+.+| ..|+.+++|+.|||++|+++...+..   +.+|+.|.+.+++--..+| .+.++++|+.+++++
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            777887543334444 46788888888888888888554433   3445555555555445666 377788888888876


Q ss_pred             Ccc
Q 002167          840 NQL  842 (957)
Q Consensus       840 N~l  842 (957)
                      +.-
T Consensus       256 ~~~  258 (350)
T 4ay9_X          256 PSH  258 (350)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.9e-18  Score=173.00  Aligned_cols=161  Identities=28%  Similarity=0.370  Sum_probs=78.3

Q ss_pred             CCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEec
Q 002167          164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL  243 (957)
Q Consensus       164 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  243 (957)
                      +|++|++++|.+++..+..+.++++|++|++++|++. .+|...+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4444444444444433334444444455555444444 223222224455555555555554444444455555555555


Q ss_pred             cCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167          244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG  323 (957)
Q Consensus       244 s~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  323 (957)
                      ++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|+++|
T Consensus       108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            555554 2333222225555555555555554444445555555555555554432       23455666666666666


Q ss_pred             CCCcchhccc
Q 002167          324 SIPSSIFELL  333 (957)
Q Consensus       324 ~~p~~l~~l~  333 (957)
                      .+|..++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            6665555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.5e-17  Score=170.16  Aligned_cols=168  Identities=24%  Similarity=0.287  Sum_probs=125.9

Q ss_pred             ccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcE
Q 002167           63 KMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL  142 (957)
Q Consensus        63 ~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~  142 (957)
                      ....|..+...|+|.+|.|...            ++ +.+|.  .+  .++|++|+|++|.+.+. .+..+ ..+++|++
T Consensus         8 ~~~~~~~~~~~Cs~~~v~c~~~------------~l-~~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~-~~l~~L~~   68 (229)
T 3e6j_A            8 HHSAACPSQCSCSGTTVDCRSK------------RH-ASVPA--GI--PTNAQILYLHDNQITKL-EPGVF-DSLINLKE   68 (229)
T ss_dssp             ---CCCCTTCEEETTEEECTTS------------CC-SSCCS--CC--CTTCSEEECCSSCCCCC-CTTTT-TTCTTCCE
T ss_pred             hhhccCCCCCEEeCCEeEccCC------------Cc-CccCC--CC--CCCCCEEEcCCCccCcc-CHHHh-hCccCCcE
Confidence            4455666778999999999643            11 23443  22  37888999999888763 34444 88888999


Q ss_pred             EECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCC
Q 002167          143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN  222 (957)
Q Consensus       143 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n  222 (957)
                      |+|++|++. .+|...+..+++|++|+|++|.+++..+..|..+++|++|++++|++. .+|..+. .+++|++|++++|
T Consensus        69 L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N  145 (229)
T 3e6j_A           69 LYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQN  145 (229)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSS
T ss_pred             EECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCC
Confidence            999988886 676655444888888888888888777777888888888888888887 7787776 7888888888888


Q ss_pred             CCCCCCCcccCCCCcccEEeccCCCCcccc
Q 002167          223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEI  252 (957)
Q Consensus       223 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i  252 (957)
                      .+++..+..+..+++|++|++++|.+.+..
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            888766677888888888888888877544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=4.5e-19  Score=214.38  Aligned_cols=233  Identities=19%  Similarity=0.224  Sum_probs=134.2

Q ss_pred             CCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCC-CCCCccccceEecCCCCcEEEEEcCCCCCccccCCCC
Q 002167           28 CSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKE-DADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNS  106 (957)
Q Consensus        28 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~-~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~  106 (957)
                      ..+.++++|+++.........             ..-..|.. .+..+.|.++.+..  ++++.++|.++++... +.  
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~--  190 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKT-------------AKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQ--  190 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHT-------------TC--------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccC-------------cccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hh--
Confidence            456788999999888644322             13346644 34567899988864  6899999998887653 22  


Q ss_pred             CccCCCCCCeeeCCCCCCCCC-------CCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc
Q 002167          107 SLFFLPRLRKLNLAFNDFNGS-------KISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI  179 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~-------~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~  179 (957)
                      .+     ++.++|+.+.+.+.       .++...|..+++|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+
T Consensus       191 ~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~l  262 (727)
T 4b8c_D          191 AL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-EL  262 (727)
T ss_dssp             ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CC
T ss_pred             hH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-cc
Confidence            22     33344444433321       133444588999999999999998 89998887 999999999999998 88


Q ss_pred             chhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhh
Q 002167          180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN  259 (957)
Q Consensus       180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~  259 (957)
                      |..|+++++|++|+|++|.++ .+|..++ ++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+...
T Consensus       263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          263 PAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             CGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             ChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            888999999999999999998 8898887 8999999999999997 678889999999999999999998888777642


Q ss_pred             ccCCcEEECcCCcCCccCcccccCcCCCcEEEeccC
Q 002167          260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN  295 (957)
Q Consensus       260 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  295 (957)
                      -..+..+++++|.+++.+|..      |+.|+++.|
T Consensus       340 ~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          340 SVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             chhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            222334778888888877754      445556555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=4.8e-18  Score=174.36  Aligned_cols=93  Identities=27%  Similarity=0.293  Sum_probs=85.4

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      +++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            46778888888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccCCCC
Q 002167          837 LSNNQLEGPIPGG  849 (957)
Q Consensus       837 ls~N~l~g~ip~~  849 (957)
                      +++|+++|.++-.
T Consensus       160 L~~N~l~c~c~l~  172 (220)
T 2v70_A          160 LLANPFNCNCYLA  172 (220)
T ss_dssp             CCSCCEECSGGGH
T ss_pred             ecCcCCcCCCchH
Confidence            9999999988743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=4.2e-17  Score=167.27  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL  837 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  837 (957)
                      ++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            44556666666666555556777888889999999998888888999999999999999999888888899999999999


Q ss_pred             ccCcccccCC
Q 002167          838 SNNQLEGPIP  847 (957)
Q Consensus       838 s~N~l~g~ip  847 (957)
                      ++|++.+.++
T Consensus       160 ~~N~~~c~c~  169 (220)
T 2v9t_B          160 AQNPFICDCH  169 (220)
T ss_dssp             CSSCEECSGG
T ss_pred             CCCCcCCCCc
Confidence            9999988665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=8.9e-17  Score=172.61  Aligned_cols=172  Identities=28%  Similarity=0.393  Sum_probs=94.4

Q ss_pred             ccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCC
Q 002167          108 LFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH  187 (957)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  187 (957)
                      +..+++|++|++++|.+..  ++ .+ ..+++|++|++++|.++ .++. +.. +++|++|++++|.+.+ +| .+..++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~-~~l~~L~~L~L~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~-~l~~l~  112 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVTKLFLNGNKLT-DIKP-LAN-LKNLGWLFLDENKVKD-LS-SLKDLK  112 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hH-hcCCCCCEEEccCCccC-CCcc-ccc-CCCCCEEECCCCcCCC-Ch-hhccCC
Confidence            3455666666666666643  22 23 55666666666666665 3443 443 6666666666666554 22 256666


Q ss_pred             CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167          188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD  267 (957)
Q Consensus       188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  267 (957)
                      +|++|++++|.+.+ + ..+. .+++|++|++++|.+++.  ..++.+++|++|++++|++++ ++. +.. +++|++|+
T Consensus       113 ~L~~L~L~~n~i~~-~-~~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l~~-l~~L~~L~  184 (291)
T 1h6t_A          113 KLKSLSLEHNGISD-I-NGLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAG-LTKLQNLY  184 (291)
T ss_dssp             TCCEEECTTSCCCC-C-GGGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTT-CTTCCEEE
T ss_pred             CCCEEECCCCcCCC-C-hhhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-hcC-CCccCEEE
Confidence            66666666666553 2 2333 556666666666666543  345555666666666665553 222 332 55555555


Q ss_pred             CcCCcCCccCcccccCcCCCcEEEeccCcCc
Q 002167          268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV  298 (957)
Q Consensus       268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  298 (957)
                      +++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus       185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          185 LSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            55555553 22 2555555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=6.2e-17  Score=173.80  Aligned_cols=189  Identities=25%  Similarity=0.308  Sum_probs=138.3

Q ss_pred             CCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEE
Q 002167          114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD  193 (957)
Q Consensus       114 L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  193 (957)
                      +..+++..+.+.+.   ... ..+++|++|++++|.+. .++. +.. +++|++|++++|.+++..+  +.++++|++|+
T Consensus        26 ~~~~~l~~~~~~~~---~~~-~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~   96 (291)
T 1h6t_A           26 TIKDNLKKKSVTDA---VTQ-NELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHTTCSCTTSE---ECH-HHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HHHHHhcCCCcccc---cch-hhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence            34445555555432   122 56788889999988887 5553 555 8889999999888886544  88888888888


Q ss_pred             ccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcC
Q 002167          194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF  273 (957)
Q Consensus       194 L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l  273 (957)
                      +++|.+.+ ++ .+. .+++|++|++++|.+++.  ..+..+++|++|++++|++++ + ..+.. +++|++|++++|.+
T Consensus        97 l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~N~l  168 (291)
T 1h6t_A           97 LDENKVKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQI  168 (291)
T ss_dssp             CCSSCCCC-GG-GGT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGG-CTTCSEEECCSSCC
T ss_pred             CCCCcCCC-Ch-hhc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhcc-CCCCCEEEccCCcc
Confidence            88888874 44 354 788888888888888754  457788888888888888873 4 34444 88888888888888


Q ss_pred             CccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167          274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG  323 (957)
Q Consensus       274 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  323 (957)
                      ++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            76544  77888888888888888753 3 37778888888888887664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=3.6e-16  Score=184.09  Aligned_cols=176  Identities=28%  Similarity=0.389  Sum_probs=129.8

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      .+..+++|+.|++++|.+..  ++ .+ ..+++|+.|+|++|.+. .+|. +.. +++|++|+|++|.+.+ +| .+..+
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~--l~-~l-~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l~-~l~~l  108 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-LS-SLKDL  108 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC--CT-TG-GGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CT-TSTTC
T ss_pred             chhcCCCCCEEECcCCCCCC--Ch-HH-ccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-Ch-hhccC
Confidence            35677888888888888765  33 34 77888888888888887 4554 555 8888888888888775 33 57888


Q ss_pred             CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167          187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL  266 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L  266 (957)
                      ++|++|+|++|.+.+ ++ .+. .+++|+.|+|++|.+++.  ..++.+++|+.|+|++|++.+..|  +.. +++|+.|
T Consensus       109 ~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L  180 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNL  180 (605)
T ss_dssp             TTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT-CTTCCEE
T ss_pred             CCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc-CCCCCEE
Confidence            888888888888874 33 454 788888888888888765  567788888888888888875444  443 7888888


Q ss_pred             ECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167          267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI  301 (957)
Q Consensus       267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  301 (957)
                      +|++|.+++.  ..+..+++|+.|+|++|.+.+..
T Consensus       181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             ECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             ECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            8888887753  35777778888888877776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=160.79  Aligned_cols=152  Identities=22%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             EEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEE
Q 002167           90 GLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD  169 (957)
Q Consensus        90 ~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  169 (957)
                      .++++++.+.. +|.  .+  .+.+++|+|++|.+++. .+..+|..+++|++|+|++|.+++..+..+.. +++|++|+
T Consensus        15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~   87 (220)
T 2v70_A           15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEIL   87 (220)
T ss_dssp             EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEE
T ss_pred             EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEE
Confidence            34555555542 333  11  23345566665555442 12222355555555555555555322223333 55555555


Q ss_pred             ccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167          170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       170 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      |++|.+++..+..|.++++|++|+|++|.+.+..|..+. .+++|++|+|++|.+++..|..|..+++|++|++++|.+.
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            555555554444455555555555555555543343333 4555555555555555444455555555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2e-16  Score=186.24  Aligned_cols=192  Identities=24%  Similarity=0.311  Sum_probs=130.1

Q ss_pred             CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167          112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH  191 (957)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  191 (957)
                      ..+..++++.+.+.+.  . .+ ..+++|+.|++++|.+. .+| .+.. +++|++|+|++|.+.+..|  +..+++|++
T Consensus        21 ~~l~~l~l~~~~i~~~--~-~~-~~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDA--V-TQ-NELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHTTCSCTTSE--E-CH-HHHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHhccCCCcccc--c-ch-hcCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            3445556666655432  1 12 56777888888888876 555 4555 7888888888888776544  777888888


Q ss_pred             EEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCC
Q 002167          192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN  271 (957)
Q Consensus       192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n  271 (957)
                      |+|++|.+.+ +| .+. .+++|++|+|++|.+++.  ..+..+++|+.|+|++|++++ + ..+.. +++|+.|+|++|
T Consensus        92 L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N  163 (605)
T 1m9s_A           92 LFLDENKIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDN  163 (605)
T ss_dssp             EECCSSCCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSS
T ss_pred             EECcCCCCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCC
Confidence            8888887763 33 444 677788888887777753  347777777777777777763 3 34443 777777777777


Q ss_pred             cCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCC
Q 002167          272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS  324 (957)
Q Consensus       272 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  324 (957)
                      .+.+..|  +..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            7775544  67777777777777777653  3466777777777777776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=5.1e-16  Score=160.31  Aligned_cols=153  Identities=27%  Similarity=0.312  Sum_probs=112.4

Q ss_pred             CcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEc
Q 002167          140 LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL  219 (957)
Q Consensus       140 L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~L  219 (957)
                      -+.++++++.+. .+|..+.   ++|++|+|++|.+.+..|..|.++++|++|+|++|++. .+|...+..+++|++|+|
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence            456777777776 7776553   57888888888888777777888888888888888876 555554447788888888


Q ss_pred             cCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcc
Q 002167          220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG  299 (957)
Q Consensus       220 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  299 (957)
                      ++|.+++..+..|..+++|++|++++|+++ .+|..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            888887666666777888888888888877 77777655 7777777777777775555566677777777777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=3.7e-16  Score=160.21  Aligned_cols=150  Identities=21%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCc
Q 002167          501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN  580 (957)
Q Consensus       501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  580 (957)
                      +.++++++.++ .+|..+. .+++.|++++|++++..+..+..+++|++|+|++|++++..|..|.++++|         
T Consensus        14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L---------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL---------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC---------
T ss_pred             CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC---------
Confidence            45666666655 3443322 244444444444444433344444444444444444444444444444444         


Q ss_pred             cccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc
Q 002167          581 LSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL  660 (957)
Q Consensus       581 l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l  660 (957)
                                    ++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+
T Consensus        83 --------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           83 --------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence                          444444444443333334444444445555444444444444444555555555555444444444


Q ss_pred             cccccccEEEccccc
Q 002167          661 DVLLELQVLILRSNR  675 (957)
Q Consensus       661 ~~l~~L~~L~L~~n~  675 (957)
                      ..+++|++|++++|+
T Consensus       149 ~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hCCCCCCEEEeCCCC
Confidence            444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.9e-16  Score=175.88  Aligned_cols=174  Identities=24%  Similarity=0.225  Sum_probs=123.7

Q ss_pred             CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC-CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCC
Q 002167          501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN  579 (957)
Q Consensus       501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  579 (957)
                      +.++++++.++ .+|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            46777777766 3554432 2567777777777766666666 7788888888888888777777888888888888888


Q ss_pred             ccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccc---cCCCCCcEEeCCCCccccC
Q 002167          580 NLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL---VNCQYLEVLDVGNNQIDDT  655 (957)
Q Consensus       580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~~  655 (957)
                      ++++..+..+.. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|++++|+++..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            887666655554 778888888888887777778888888888888888875443444   5678888888888888876


Q ss_pred             ccccccccccc--cEEEcccccc
Q 002167          656 FPYWLDVLLEL--QVLILRSNRF  676 (957)
Q Consensus       656 ~p~~l~~l~~L--~~L~L~~n~~  676 (957)
                      .+..+..++.+  +.|+|++|++
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CHHHhhhccHhhcceEEecCCCc
Confidence            66666666653  5566655554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=1.6e-16  Score=176.51  Aligned_cols=128  Identities=24%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhh-cCCCCCEEEccCCcCCCCcchhccCCCCCCEEE
Q 002167          115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD  193 (957)
Q Consensus       115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  193 (957)
                      ++++++++.+..  +|..+   .+.+++|+|++|+++ .++...+. .+++|++|+|++|.+++..+..|.++++|++|+
T Consensus        21 ~~l~c~~~~l~~--iP~~~---~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSL---PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCSS--CCSSC---CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCc--cCccC---CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            355555555543  44433   234555555555555 23322221 255555555555555544444455555555555


Q ss_pred             ccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167          194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       194 L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      |++|++.+ ++...+..+++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus        95 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           95 LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            55555542 22222224555555555555555444444555555555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=6.7e-17  Score=161.97  Aligned_cols=113  Identities=22%  Similarity=0.399  Sum_probs=96.8

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      +++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccCCCCCCCCcc-cCCcccCCcCCCCCC
Q 002167          837 LSNNQLEGPIPGGPQFNTF-GNDSYSGNSGLCGFP  870 (957)
Q Consensus       837 ls~N~l~g~ip~~~~~~~~-~~~~~~gn~~lcg~~  870 (957)
                      +++|+++|.+|..+ +..| ....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence            99999999987432 2111 222344555556554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=2.6e-16  Score=166.21  Aligned_cols=169  Identities=20%  Similarity=0.272  Sum_probs=117.6

Q ss_pred             CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEc
Q 002167          592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLIL  671 (957)
Q Consensus       592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L  671 (957)
                      ..+..+++++|.+++..  .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            45666677777776433  46677778888888887763 44 57777788888888887776544  556666665555


Q ss_pred             ccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhH
Q 002167          672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL  751 (957)
Q Consensus       672 ~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (957)
                      ++|++.+.. ...                                                                   
T Consensus        93 ~~N~l~~l~-~~~-------------------------------------------------------------------  104 (263)
T 1xeu_A           93 NRNRLKNLN-GIP-------------------------------------------------------------------  104 (263)
T ss_dssp             CSSCCSCCT-TCC-------------------------------------------------------------------
T ss_pred             CCCccCCcC-ccc-------------------------------------------------------------------
Confidence            555543211 000                                                                   


Q ss_pred             HHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCC
Q 002167          752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY  831 (957)
Q Consensus       752 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~  831 (957)
                           ...|+.|+|++|++++.  +.++.+++|+.|+|++|++++. | .++.+++|++|++++|++++.  ..+..+++
T Consensus       105 -----~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~  173 (263)
T 1xeu_A          105 -----SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK  173 (263)
T ss_dssp             -----CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred             -----cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence                 03456677777777653  3477788888888888888875 3 588888888888888888876  66788888


Q ss_pred             CCeEECccCccccc
Q 002167          832 LSVLNLSNNQLEGP  845 (957)
Q Consensus       832 L~~L~ls~N~l~g~  845 (957)
                      |+.|++++|++++.
T Consensus       174 L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          174 VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCEEEEEEEEEECC
T ss_pred             CCEEeCCCCcccCC
Confidence            88888888888865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=9.1e-17  Score=169.67  Aligned_cols=171  Identities=22%  Similarity=0.330  Sum_probs=116.8

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167          110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL  189 (957)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  189 (957)
                      .++.++.++++.+.+++  ++ .+ ..+++|++|++++|.+. .+| .+.. +++|++|+|++|.+++..+  +.++++|
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~-~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L   87 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQ-KELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CH-HHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred             HHHHHHHHHhcCCCccc--cc-ch-hhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCC
Confidence            34556666777776654  22 23 66777788888877776 566 5555 7778888888877775544  7777778


Q ss_pred             CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167          190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS  269 (957)
Q Consensus       190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  269 (957)
                      ++|++++|++++ +|.. . . ++|++|++++|.+++.  ..++++++|++|++++|+++ .++ .+.. +++|++|+++
T Consensus        88 ~~L~L~~N~l~~-l~~~-~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~l~~-l~~L~~L~L~  158 (263)
T 1xeu_A           88 EELSVNRNRLKN-LNGI-P-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-MLGF-LSKLEVLDLH  158 (263)
T ss_dssp             CEEECCSSCCSC-CTTC-C-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-GGGG-CTTCCEEECT
T ss_pred             CEEECCCCccCC-cCcc-c-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-HHcc-CCCCCEEECC
Confidence            888888777763 4432 2 2 7777777777777753  34777777777777777776 344 3444 7777777777


Q ss_pred             CCcCCccCcccccCcCCCcEEEeccCcCccc
Q 002167          270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK  300 (957)
Q Consensus       270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  300 (957)
                      +|.+++.  ..+..+++|++|++++|.+.+.
T Consensus       159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            7777755  5577777777777777777644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.9e-18  Score=200.79  Aligned_cols=182  Identities=18%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCc-------------CCCCcchhccCCCCCCEEE-ccCCcCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS-------------FIGHIPSSFSNLHQLRHLD-LQSNNFV  200 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~  200 (957)
                      ..+++|+.|+|++|++. .+|..++. +++|+.|++++|.             ..+..|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45777778888888776 77888877 7888888876664             4566677777778888777 5554332


Q ss_pred             CCCchh------hhh-CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcC
Q 002167          201 GKIPAS------LGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF  273 (957)
Q Consensus       201 ~~~p~~------l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l  273 (957)
                       .++..      +.. ....|++|++++|.+++ +|. ++++++|++|++++|+++ .+|..+.. +++|+.|+|++|.+
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNAL  498 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCC
Confidence             11110      000 11246777777777764 454 666777777777777776 66666655 67777777777776


Q ss_pred             CccCcccccCcCCCcEEEeccCcCcccC-CccccccCcCceeeccCCcCCCCC
Q 002167          274 SGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYNELIGSI  325 (957)
Q Consensus       274 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~  325 (957)
                      ++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..
T Consensus       499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            64 45 5666667777777777666654 666666666666666666666443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=2.9e-16  Score=158.22  Aligned_cols=152  Identities=16%  Similarity=0.275  Sum_probs=85.1

Q ss_pred             CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEE
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL  241 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  241 (957)
                      +++|++|++++|.+. .+| .+..+++|++|++++|.+. . +..+. .+++|++|++++|.+++..|..++++++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            445555555555554 333 3555555555555555443 1 22333 55666666666666655555556666666666


Q ss_pred             eccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167          242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL  321 (957)
Q Consensus       242 ~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  321 (957)
                      ++++|++++..|..+.. +++|++|++++|...+.+| .+..+++|++|++++|.+.+. + .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhh-CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            66666666555555544 6666666666665222333 466666666666666666542 2 456666666666666665


Q ss_pred             C
Q 002167          322 I  322 (957)
Q Consensus       322 ~  322 (957)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=9.1e-16  Score=154.56  Aligned_cols=154  Identities=19%  Similarity=0.272  Sum_probs=94.9

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      ..+++|++|++++|.+. .+| .+.. +++|++|++++|.+..  +..+..+++|++|++++|.+++..+..+. .+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence            44566677777776666 555 4554 6677777777665432  23566667777777777766655555555 66677


Q ss_pred             cEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167          215 AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY  294 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  294 (957)
                      ++|++++|.+++..|..++++++|++|++++|...+.+| .+.. +++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~-l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT-LPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG-CSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcC-CCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            777777776666556666666777777777766223555 3433 6667777777776664 22 566666677777766


Q ss_pred             CcCc
Q 002167          295 NNFV  298 (957)
Q Consensus       295 n~l~  298 (957)
                      |++.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            6654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.9e-18  Score=202.36  Aligned_cols=215  Identities=20%  Similarity=0.186  Sum_probs=140.9

Q ss_pred             CccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceee
Q 002167          380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH  459 (957)
Q Consensus       380 ~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~  459 (957)
                      ...++|+.|++++|.++.+|..++.+++|+.|++++|......|..                                  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------------------------------  391 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL----------------------------------  391 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------------------------------
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH----------------------------------
Confidence            4567788888888888888888888888888887655321011100                                  


Q ss_pred             ccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEE-cccCcCccCCCccccccccceeecccccccCcCC
Q 002167          460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD-LSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIP  538 (957)
Q Consensus       460 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~  538 (957)
                                           +..+...+..|..+..+++|+.|+ ++.|.+.          .|+.+.+.+|.++...+
T Consensus       392 ---------------------l~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~----------~L~~l~l~~n~i~~l~~  440 (567)
T 1dce_A          392 ---------------------MRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----------DLRSKFLLENSVLKMEY  440 (567)
T ss_dssp             ---------------------HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHhcccccCCHHHHHHHHhcccCcchhhcccc----------hhhhhhhhcccccccCc
Confidence                                 011122344566666777777777 5555432          56666667776654322


Q ss_pred             CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167          539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV  617 (957)
Q Consensus       539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~  617 (957)
                            ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++. ++|+.|+|++|.+++ +| .++.+++
T Consensus       441 ------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~  509 (567)
T 1dce_A          441 ------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPR  509 (567)
T ss_dssp             ------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred             ------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCC
Confidence                  247778888888775 454 777788888888888777 66666655 777777777777775 45 6777777


Q ss_pred             ccEEEccCCcCccCC-CccccCCCCCcEEeCCCCccccCcccc---ccccccccEEE
Q 002167          618 LVSLNLNGNRLKGPL-PPSLVNCQYLEVLDVGNNQIDDTFPYW---LDVLLELQVLI  670 (957)
Q Consensus       618 L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p~~---l~~l~~L~~L~  670 (957)
                      |+.|+|++|++++.. |..+..+++|+.|++++|++++..|..   +..+++|++|+
T Consensus       510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            777777777777665 777777777777777777777664432   22356666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=2.9e-16  Score=189.78  Aligned_cols=142  Identities=24%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             cCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCcccccc
Q 002167          536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAK  614 (957)
Q Consensus       536 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~  614 (957)
                      ..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++. ++|++|+|++|.|+ .+|..|+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34555666667777777777766 45555566777777777777766 56665544 66677777777666 55666666


Q ss_pred             CCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccc-ccEEEcccccccccCC
Q 002167          615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE-LQVLILRSNRFWGPIG  681 (957)
Q Consensus       615 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~~~~~~~  681 (957)
                      +++|++|+|++|.++ .+|..|.++++|+.|+|++|++++.+|..+..+.. +..+++++|.+.+.+|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            666777777666665 55666666666666666666666666665554321 1224455555544443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=1.2e-14  Score=145.44  Aligned_cols=113  Identities=26%  Similarity=0.333  Sum_probs=81.8

Q ss_pred             CCcEEECCCCccCccCchh-hhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          139 SLTLLDLCSCNFTGSIPPS-LGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~-l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      +|++|++++|.+.+..+.. +.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+. ++++|++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCTTCCEE
T ss_pred             CCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-CCCCCCEE
Confidence            6677777777776333332 444 77777777777777777777777777777777777777755444454 77888888


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCccccc
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP  253 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  253 (957)
                      +|++|++++..|..+..+++|++|++++|.+.+..+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            888888887777788888888888888888876655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=2.6e-14  Score=139.82  Aligned_cols=134  Identities=24%  Similarity=0.300  Sum_probs=100.3

Q ss_pred             CCCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          136 QFPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       136 ~l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      ..++|++|++++|.+. +.+|..+.. +++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+. ++++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCC
Confidence            3467888888888887 677777665 88888888888887765  6678888888888888888866666654 68888


Q ss_pred             cEEEccCCCCCCCC-CcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEECcCCcCC
Q 002167          215 AYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls~n~l~  274 (957)
                      ++|++++|.+++.. +..+..+++|++|++++|.++ .+|.   .....+++|++|++++|.+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888888887542 266778888888888888887 4443   23333777777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=3.5e-14  Score=135.80  Aligned_cols=128  Identities=20%  Similarity=0.261  Sum_probs=90.6

Q ss_pred             CCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167          137 FPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA  215 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~  215 (957)
                      .++|++|++++|.+. +.+|..+.. +++|++|++++|.+++.  ..++++++|++|++++|.+++.+|..+. .+++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCC
Confidence            456777777777776 667766665 77888888888877755  5677788888888888887765666554 678888


Q ss_pred             EEEccCCCCCCC-CCcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEECc
Q 002167          216 YLDLSSNSFSGH-IPSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDLS  269 (957)
Q Consensus       216 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls  269 (957)
                      +|++++|.+++. .+..++.+++|++|++++|.+++ +|.   .....+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence            888888887753 23667777788888888887773 333   233337777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=6.4e-14  Score=137.03  Aligned_cols=132  Identities=23%  Similarity=0.269  Sum_probs=77.0

Q ss_pred             CCCCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcE
Q 002167          187 HQLRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY  265 (957)
Q Consensus       187 ~~L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~  265 (957)
                      ++|++|++++|.+. +.+|..+. .+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+.. +++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence            44555555555544 34444433 455555555555555543  45566666666666666666445554443 667777


Q ss_pred             EECcCCcCCccC-cccccCcCCCcEEEeccCcCcccCC---ccccccCcCceeeccCCcCC
Q 002167          266 LDLSSNGFSGHI-PSSFSNLQQLLWLNLEYNNFVGKIP---DMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       266 L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~  322 (957)
                      |++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            777777666431 2556666677777777776665433   35666666777776666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=2.8e-14  Score=136.45  Aligned_cols=126  Identities=25%  Similarity=0.259  Sum_probs=87.2

Q ss_pred             CCccEEEccCCcCC-CCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEE
Q 002167          545 CKLTYLRLSGNHLE-GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLN  622 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  622 (957)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++. ++|++|++++|.+++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666666 55666666677777777777776644  33333 6777777777777766777777777788888


Q ss_pred             ccCCcCccC-CCccccCCCCCcEEeCCCCccccCcc---ccccccccccEEEcc
Q 002167          623 LNGNRLKGP-LPPSLVNCQYLEVLDVGNNQIDDTFP---YWLDVLLELQVLILR  672 (957)
Q Consensus       623 Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~L~  672 (957)
                      +++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888777753 33667777888888888888777655   467777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=3.9e-14  Score=155.11  Aligned_cols=194  Identities=14%  Similarity=0.117  Sum_probs=91.2

Q ss_pred             CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCC----CCCCCCcccCCCCc
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS----FSGHIPSSFSNLQQ  237 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~----l~~~~p~~l~~l~~  237 (957)
                      +++|+.|+|.+ .++..-+.+|.+|++|+.+++++|.+. .++...+..+.++.++....+.    ........|.++..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666665 555444455666666666666666555 3444444355555555444321    11112223333444


Q ss_pred             cc-EEeccCCCCccccchhHh---------------------------hhccCCcEEECcCCcCCccCcccccCcCCCcE
Q 002167          238 LC-YLDLDDNHFVGEIPASLG---------------------------NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW  289 (957)
Q Consensus       238 L~-~L~Ls~n~l~~~ip~~l~---------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  289 (957)
                      |+ .+.+...   +.++..++                           ..+++|+.+++++|.++...+.+|.++++|++
T Consensus       178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            44 2332221   12222222                           12455555555555555444445555555555


Q ss_pred             EEeccCcCcccCCccccccCcCc-eeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEE
Q 002167          290 LNLEYNNFVGKIPDMFTNLTQLS-FLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVL  363 (957)
Q Consensus       290 L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  363 (957)
                      +++.+| +....+.+|.++.+|+ .+++.. .++...+.+|.++++|+.++++.|.+. .++...|.++++|+.+
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence            555554 4444445555555555 555554 333333344555555555555555444 3333444445555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=4.4e-13  Score=134.02  Aligned_cols=109  Identities=30%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      ++|++|++++|.++ .+|..+.. +++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+. .+++|++|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC-CCCCCCEE
Confidence            46667777777766 66665655 77777777777777766666677777777777777777644333443 66777777


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      +|++|.++...+..|..+++|++|++++|.+.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77777776555555666777777777777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.3e-13  Score=134.79  Aligned_cols=93  Identities=26%  Similarity=0.297  Sum_probs=86.7

Q ss_pred             ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL  837 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  837 (957)
                      +.++.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            56889999999999999999999999999999999999888888999999999999999999888888999999999999


Q ss_pred             ccCcccccCCCCC
Q 002167          838 SNNQLEGPIPGGP  850 (957)
Q Consensus       838 s~N~l~g~ip~~~  850 (957)
                      ++|++++.++...
T Consensus       110 ~~N~~~c~c~~l~  122 (170)
T 3g39_A          110 LNNPWDCACSDIL  122 (170)
T ss_dssp             CSSCBCTTBGGGH
T ss_pred             CCCCCCCCchhHH
Confidence            9999999877433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=6.6e-13  Score=130.99  Aligned_cols=129  Identities=26%  Similarity=0.321  Sum_probs=60.9

Q ss_pred             CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167          115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL  194 (957)
Q Consensus       115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  194 (957)
                      +.++++++.+..  +|..+   .++|++|++++|++. .+|......+++|++|++++|.+++..+..+.++++|++|++
T Consensus        10 ~~l~~~~~~l~~--~p~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           10 TEIRCNSKGLTS--VPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TEEECCSSCCSS--CCTTC---CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCCCCcc--CCCCC---CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            455555555533  33322   245555555555555 333322222555555555555555444444455555555555


Q ss_pred             cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167          195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG  250 (957)
Q Consensus       195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  250 (957)
                      ++|.+++ +|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        84 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            5555542 222222244555555555555554333334445555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=9.3e-13  Score=131.62  Aligned_cols=109  Identities=31%  Similarity=0.401  Sum_probs=58.9

Q ss_pred             cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeec
Q 002167          237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGL  316 (957)
Q Consensus       237 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  316 (957)
                      +|++|++++|+++ .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            4455555555554 44444333 555555555555555444455555555555555555555555555555555666666


Q ss_pred             cCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167          317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSG  347 (957)
Q Consensus       317 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  347 (957)
                      ++|.++...+..+..+++|+.|++++|.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6655554333445555666666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.42  E-value=1.5e-12  Score=128.34  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEc
Q 002167          545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNL  623 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  623 (957)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.. ++|++|++++|.+++..+..|..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            45666666666666555555666677777777777666444444433 66666666666666655556666777777777


Q ss_pred             cCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167          624 NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP  657 (957)
Q Consensus       624 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  657 (957)
                      ++|++++..+..+..+++|++|++++|++.+..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7777765555556667777777777777665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=4.9e-13  Score=131.11  Aligned_cols=91  Identities=26%  Similarity=0.313  Sum_probs=84.5

Q ss_pred             ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL  837 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l  837 (957)
                      +.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            57889999999999999999999999999999999999987777899999999999999999877777999999999999


Q ss_pred             ccCcccccCCC
Q 002167          838 SNNQLEGPIPG  848 (957)
Q Consensus       838 s~N~l~g~ip~  848 (957)
                      ++|++.+.++.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999987653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=6.3e-13  Score=130.96  Aligned_cols=132  Identities=23%  Similarity=0.301  Sum_probs=91.4

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      ..+++|++|++++|.+. .+|. +....++|++|++++|.+++.  ..+.++++|++|++++|.++ .+|..++..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            55677777777777777 5553 444244788888888877754  46777888888888888877 4554443377888


Q ss_pred             cEEEccCCCCCCCCCc--ccCCCCcccEEeccCCCCccccchh----HhhhccCCcEEECcCCcCC
Q 002167          215 AYLDLSSNSFSGHIPS--SFSNLQQLCYLDLDDNHFVGEIPAS----LGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~ip~~----l~~~l~~L~~L~Ls~n~l~  274 (957)
                      ++|++++|.++ .+|.  .+..+++|++|++++|.+. .+|..    +.. +++|++||++.|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~-l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK-VPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH-CCccceeCCCcCCHH
Confidence            88888888875 3444  6777777888888887776 55654    433 777777777776554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=4.3e-13  Score=146.82  Aligned_cols=44  Identities=9%  Similarity=0.244  Sum_probs=26.2

Q ss_pred             CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc
Q 002167          474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL  518 (957)
Q Consensus       474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  518 (957)
                      ++|+.+++.+ .++...+.+|.+|++|+.+++.+|.+....+..+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF  144 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL  144 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhh
Confidence            5566666666 5555555667777777777777776654444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1.2e-11  Score=138.15  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=163.7

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167          110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL  189 (957)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  189 (957)
                      .+..++.+.+..+ ++  .|+...|.++ +|+.+.+..+ +. .|+...+.+ .+|+.+++.. .+...-+.+|.+|++|
T Consensus       111 ~~~~l~~i~ip~~-i~--~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK--SIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             ECSSCSEEECCTT-CC--EECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             ecCCccEEEECCc-cC--EehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence            3466777777653 21  2455555665 7888888776 55 666666653 4688888885 5665666778888889


Q ss_pred             CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167          190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS  269 (957)
Q Consensus       190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  269 (957)
                      +.+++.+|.+. .++...+ .+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++ .|+...+.+ .+|+.+.+.
T Consensus       183 ~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp  256 (401)
T 4fdw_A          183 KKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP  256 (401)
T ss_dssp             CEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE
T ss_pred             CeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC
Confidence            99998888877 6777776 4688888888744 66566677888888888888765 44 666666664 678888884


Q ss_pred             CCcCCccCcccccCcCCCcEEEeccCcCc-----ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCC
Q 002167          270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFV-----GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN  344 (957)
Q Consensus       270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  344 (957)
                       +.++.....+|.++++|+.+++.++.+.     ...+.+|..+++|+.+.+.. .++..-...|.++.+|+.+.+..+ 
T Consensus       257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence             4455455667888888888888776654     34556677777777777773 354344455666677777777543 


Q ss_pred             CcccccchhhhcCCCCcEEEccccc
Q 002167          345 FSGSVELYDFAKLKNLKVLSLSNIS  369 (957)
Q Consensus       345 l~~~~~~~~l~~l~~L~~L~L~~~~  369 (957)
                      +. .+....|.++ +|+.+++.++.
T Consensus       334 l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          334 VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            22 3444556666 66666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=8.1e-15  Score=147.70  Aligned_cols=85  Identities=27%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             hhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCC
Q 002167          157 SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ  236 (957)
Q Consensus       157 ~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  236 (957)
                      .+.. +++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+. .+++|++|++++|.+++ +| .+.+++
T Consensus        43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCc-CC-ccccCC
Confidence            4443 4455555555444443 33 3444444444444444444 3333332 33444444444444432 12 233333


Q ss_pred             cccEEeccCCCC
Q 002167          237 QLCYLDLDDNHF  248 (957)
Q Consensus       237 ~L~~L~Ls~n~l  248 (957)
                      +|++|++++|++
T Consensus       116 ~L~~L~l~~N~i  127 (198)
T 1ds9_A          116 NLRVLYMSNNKI  127 (198)
T ss_dssp             HSSEEEESEEEC
T ss_pred             CCCEEECCCCcC
Confidence            444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=1e-11  Score=138.84  Aligned_cols=246  Identities=13%  Similarity=0.077  Sum_probs=186.8

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167          107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL  186 (957)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  186 (957)
                      ++..+ +|+.+++..+ +.  .|....|.++ +|+.+.+.. .+. .++...+.+|++|+.++++.|.++......|. +
T Consensus       131 aF~~~-~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             hcccC-CccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            55554 7999999876 43  2555665764 799999986 565 66666666699999999999988866556666 6


Q ss_pred             CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167          187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL  266 (957)
Q Consensus       187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L  266 (957)
                      .+|+.+.+..+ +. .++...+.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++ .++...+.+|++|+.+
T Consensus       203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEV  276 (401)
T ss_dssp             CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEE
T ss_pred             cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEE
Confidence            89999999854 54 667666668999999999875 55555667777 789999994 4455 6777777779999999


Q ss_pred             ECcCCcCC-----ccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecC
Q 002167          267 DLSSNGFS-----GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS  341 (957)
Q Consensus       267 ~Ls~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  341 (957)
                      ++.++.+.     ...+..|.+|++|+.+.+. +.+......+|.++++|+.+.+..+ ++..-..+|.++ +|+.+++.
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence            99887765     3556778999999999998 4577677788999999999999665 554556678888 99999999


Q ss_pred             CCCCcccccchhhhcCC-CCcEEEcccccc
Q 002167          342 FSNFSGSVELYDFAKLK-NLKVLSLSNISL  370 (957)
Q Consensus       342 ~n~l~~~~~~~~l~~l~-~L~~L~L~~~~~  370 (957)
                      +|... .+....|.+++ +++.+.+..+..
T Consensus       354 ~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          354 GTTPP-QVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence            98776 34445566664 678888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.7e-12  Score=127.86  Aligned_cols=130  Identities=16%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             CCCCCccEEEccCCcCCCCCCccccCC-CCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccE
Q 002167          542 AKGCKLTYLRLSGNHLEGPLPPSLTNC-VKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVS  620 (957)
Q Consensus       542 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  620 (957)
                      ..+.+|++|++++|+++. +|. +..+ ++|++|++++|.+++. +..-..++|++|++++|.+++..+..|..+++|+.
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            345667777777777663 343 3333 3777777777777643 22222266777777777766544444566777777


Q ss_pred             EEccCCcCccCCCc--cccCCCCCcEEeCCCCccccCccc----cccccccccEEEcccccc
Q 002167          621 LNLNGNRLKGPLPP--SLVNCQYLEVLDVGNNQIDDTFPY----WLDVLLELQVLILRSNRF  676 (957)
Q Consensus       621 L~Ls~n~l~~~~p~--~l~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~~  676 (957)
                      |++++|+++ .+|.  .+..+++|+.|++++|+++.. |.    .+..+++|++|++++|..
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            777777764 3443  566677777777777776643 33    255566666665555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=2e-14  Score=144.79  Aligned_cols=134  Identities=22%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             CCCCCEEEccCCcCCCCcch------hccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCC
Q 002167          162 ITQLAYLDLSINSFIGHIPS------SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL  235 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  235 (957)
                      ...++.++++.+.+.+.+|.      .+..+++|++|++++|.+.+ +| .+. ++++|++|++++|.++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence            55566666666666555544      66667777777777776663 55 444 5666666666666666 445555555


Q ss_pred             CcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCc-ccccCcCCCcEEEeccCcCcccCC
Q 002167          236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQLLWLNLEYNNFVGKIP  302 (957)
Q Consensus       236 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p  302 (957)
                      ++|++|++++|+++ .+| .+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.+|
T Consensus        93 ~~L~~L~L~~N~l~-~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           93 DTLEELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHCSEEEEEEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CcCCEEECcCCcCC-cCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            66666666666665 344 3433 5666666666666653221 345555666666666665554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=1.8e-11  Score=119.48  Aligned_cols=102  Identities=24%  Similarity=0.260  Sum_probs=51.6

Q ss_pred             CeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCc
Q 002167          572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ  651 (957)
Q Consensus       572 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  651 (957)
                      +.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus        12 ~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            34444444444 2333221 445555555555555555555555555555555555554444445555555555555555


Q ss_pred             cccCccccccccccccEEEccccc
Q 002167          652 IDDTFPYWLDVLLELQVLILRSNR  675 (957)
Q Consensus       652 l~~~~p~~l~~l~~L~~L~L~~n~  675 (957)
                      +++..+..|..+++|++|+|++|+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCC
Confidence            555444444444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.26  E-value=1.1e-10  Score=131.00  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=33.0

Q ss_pred             chhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEecc
Q 002167          180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLD  244 (957)
Q Consensus       180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  244 (957)
                      ..+|.++.+|+.+.+..+ ++ .+....+.++++|+.+++..+ ++.....+|.++++|+.+.+.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            345666777777766533 33 444444445666666666543 333334445555555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=3.6e-11  Score=117.72  Aligned_cols=103  Identities=21%  Similarity=0.246  Sum_probs=55.7

Q ss_pred             CeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCc
Q 002167          572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ  651 (957)
Q Consensus       572 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  651 (957)
                      +.+++++|.+. .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|++|++++|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            34555555543 3444332 455555666666555555556666666666666666665444445566666666666666


Q ss_pred             cccCccccccccccccEEEcccccc
Q 002167          652 IDDTFPYWLDVLLELQVLILRSNRF  676 (957)
Q Consensus       652 l~~~~p~~l~~l~~L~~L~L~~n~~  676 (957)
                      +++..+..|..+++|++|+|++|++
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCc
Confidence            6554444455555555544444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.18  E-value=3.6e-10  Score=126.82  Aligned_cols=158  Identities=13%  Similarity=0.013  Sum_probs=101.1

Q ss_pred             cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc
Q 002167          153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF  232 (957)
Q Consensus       153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l  232 (957)
                      .|....+.++.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ +. .++...+.++.+|+.+.+..+ +......+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            566655556999999999854 66556678999999999999765 44 566666668999998877654 333445566


Q ss_pred             CCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCc
Q 002167          233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS  312 (957)
Q Consensus       233 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  312 (957)
                      .++..++........   .+....+.++++|+.+.+..+. .......|.++.+|+.+.+..+ +......+|.++..|+
T Consensus       137 ~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            666554444333322   3334444457777777776543 2244456667777777776654 3334455566666666


Q ss_pred             eeeccCC
Q 002167          313 FLGLAYN  319 (957)
Q Consensus       313 ~L~L~~n  319 (957)
                      .+.+..+
T Consensus       212 ~i~~~~~  218 (394)
T 4fs7_A          212 NMEFPNS  218 (394)
T ss_dssp             BCCCCTT
T ss_pred             eeecCCC
Confidence            6665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.8e-12  Score=143.56  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CCCCeeeCCCCCCCCCC---CCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhc-----
Q 002167          112 PRLRKLNLAFNDFNGSK---ISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSF-----  183 (957)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l-----  183 (957)
                      ++|++|+|++|.++...   +...+....++|++|+|++|.+.+.....+...+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666666654321   1111111235666677776666543333443335566666666666654333332     


Q ss_pred             cCCCCCCEEEccCCcCCCC----CchhhhhCCCCCcEEEccCCCCCCCC----CcccCCCCcccEEeccCCCCc
Q 002167          184 SNLHQLRHLDLQSNNFVGK----IPASLGNNITQLAYLDLSSNSFSGHI----PSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~----~p~~l~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      ...++|++|+|++|.++..    ++..+. .+++|++|+|++|.+++..    +..+...++|++|+|++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            2345566666666655421    122222 4555556666555554321    233444455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.4e-12  Score=144.39  Aligned_cols=63  Identities=25%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             ccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCceeeccCCcCC
Q 002167          260 ITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       260 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  322 (957)
                      +++|++|+|++|.+++.    ++..+...++|++|+|++|.+++.    ++..+...++|++|+|++|.++
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            34444555544444321    122333444455555555544431    1122233344555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=6.6e-11  Score=130.52  Aligned_cols=90  Identities=22%  Similarity=0.244  Sum_probs=83.1

Q ss_pred             cccceEEEccc-CccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeE
Q 002167          757 LTTFATIDLSS-NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL  835 (957)
Q Consensus       757 l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  835 (957)
                      +++|+.|+|++ |.|++..|..|++|++|+.|+|++|+|++..|..|++|++|++|||++|+|++..|..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            46789999996 999999999999999999999999999999999999999999999999999987777777776 9999


Q ss_pred             ECccCcccccCC
Q 002167          836 NLSNNQLEGPIP  847 (957)
Q Consensus       836 ~ls~N~l~g~ip  847 (957)
                      ++++|++.+.++
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            999999998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.7e-09  Score=119.16  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             EECCCC-ccCccCchhhhhcCCCCCEEEccC-CcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167          143 LDLCSC-NFTGSIPPSLGNNITQLAYLDLSI-NSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS  220 (957)
Q Consensus       143 L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls  220 (957)
                      ++++++ +++ .+|. +.. +++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..+. ++++|++|+|+
T Consensus        13 v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECC
T ss_pred             EEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCC
Confidence            466665 565 5666 554 66677777764 666666666667777777777777776654444444 67777777777


Q ss_pred             CCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167          221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      +|++++..+..+..++ |++|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777655555555554 777777777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=6.5e-08  Score=108.32  Aligned_cols=108  Identities=13%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167          539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV  617 (957)
Q Consensus       539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~  617 (957)
                      ..|..+..|+.+.+.++.. ......|.++++|+.+.+.. .++..-...+.. .+|+.+++..+ ++.....+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3455555566665544322 12334455555555555532 222111222222 44444444332 22222334444444


Q ss_pred             ccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167          618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN  650 (957)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  650 (957)
                      |+.+.+..+ ++..-..+|.+|++|+.+++.++
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            444444322 22222234444444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.91  E-value=8.5e-08  Score=107.36  Aligned_cols=132  Identities=12%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCC
Q 002167          491 PSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK  570 (957)
Q Consensus       491 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  570 (957)
                      ..+|.++..|+.+.+.++...                        .....+..+.+|+.+.+. +.++......|.+|.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~------------------------I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~  312 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS------------------------IGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS  312 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE------------------------ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT
T ss_pred             cceeeecccccEEecccccce------------------------ecCcccccccccccccCC-CcccccCceeecCCCC
Confidence            345667777777776544321                        112233444555555553 2333333445666666


Q ss_pred             CCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167          571 LQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN  649 (957)
Q Consensus       571 L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  649 (957)
                      |+.+++..+ ++..-...+.. .+|+.+.+..+ ++..-..+|.++++|+.+++.++....   ..+..++.|+.+.+..
T Consensus       313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            666666543 33222333433 66666666543 444455678889999999998876542   4567788888887766


Q ss_pred             Ccc
Q 002167          650 NQI  652 (957)
Q Consensus       650 n~l  652 (957)
                      +.+
T Consensus       388 ~~~  390 (394)
T 4gt6_A          388 GSI  390 (394)
T ss_dssp             ---
T ss_pred             CCE
Confidence            543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=7.9e-09  Score=113.12  Aligned_cols=142  Identities=16%  Similarity=0.277  Sum_probs=78.2

Q ss_pred             CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhh-hCCCCCcEEEccC--CCCCCC---
Q 002167          154 IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG-NNITQLAYLDLSS--NSFSGH---  227 (957)
Q Consensus       154 ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~~l~~L~~L~Ls~--n~l~~~---  227 (957)
                      ++..+.. +++|+.|+|++|.-. .++. +. +++|++|++..|.+.......+. ..+++|++|+|+.  +...+.   
T Consensus       164 L~~ll~~-~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          164 LSPVLDA-MPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             CHHHHHT-CTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHHHHhc-CCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            4444444 677777777766311 2222 32 67778887777766533333333 1577788877753  111111   


Q ss_pred             --CCccc--CCCCcccEEeccCCCCccccchhHhh--hccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcC
Q 002167          228 --IPSSF--SNLQQLCYLDLDDNHFVGEIPASLGN--NITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNF  297 (957)
Q Consensus       228 --~p~~l--~~l~~L~~L~Ls~n~l~~~ip~~l~~--~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  297 (957)
                        +...+  ..+++|++|++++|.+.+..+..+..  .+++|++|+|+.|.+.+.    ++..+..+++|+.|+++.|.+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence              01112  24677888888877776544444432  256677777777766643    223334556666666666655


Q ss_pred             cc
Q 002167          298 VG  299 (957)
Q Consensus       298 ~~  299 (957)
                      +.
T Consensus       320 ~d  321 (362)
T 2ra8_A          320 SD  321 (362)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=2.2e-09  Score=117.49  Aligned_cols=203  Identities=16%  Similarity=0.186  Sum_probs=134.2

Q ss_pred             CcEEEEEcCCCCCcc-c-------cCCCCCccCCCCCCeeeCCCCCCCCC--------CCCchhhcCCCCCcEEECCCCc
Q 002167           86 GHVIGLDLSCSWLHG-N-------IPSNSSLFFLPRLRKLNLAFNDFNGS--------KISSGFTDQFPSLTLLDLCSCN  149 (957)
Q Consensus        86 ~~v~~l~L~~~~l~g-~-------~~~~~~l~~l~~L~~L~Ls~n~~~~~--------~i~~~~~~~l~~L~~L~Ls~n~  149 (957)
                      .+|+.|.+......| .       +..  ++..+++|+.|.+........        .+. .++..+++|+.|+|++|.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~--s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVE--NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHT--THHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHH--hhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCC
Confidence            468888888766543 1       122  456789999999976543211        133 334789999999999884


Q ss_pred             cCccCchhhhhcCCCCCEEEccCCcCCCCcchhcc--CCCCCCEEEccC--CcCCCC-----Cchhhh-hCCCCCcEEEc
Q 002167          150 FTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS--NLHQLRHLDLQS--NNFVGK-----IPASLG-NNITQLAYLDL  219 (957)
Q Consensus       150 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~-----~p~~l~-~~l~~L~~L~L  219 (957)
                      -. .++. + . +++|++|+|..|.+.......+.  .+++|++|+|+.  +...+.     +...+. ..+++|++|+|
T Consensus       184 ~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          184 NL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI  259 (362)
T ss_dssp             TC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred             Cc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence            22 3444 3 3 88999999999887655444444  799999999863  221111     111111 25799999999


Q ss_pred             cCCCCCCCCCccc---CCCCcccEEeccCCCCccccchhHh---hhccCCcEEECcCCcCCccCcccccCcCCCcEEEec
Q 002167          220 SSNSFSGHIPSSF---SNLQQLCYLDLDDNHFVGEIPASLG---NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE  293 (957)
Q Consensus       220 s~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~ip~~l~---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  293 (957)
                      .+|.+.+..+..+   ..+++|++|+|+.|.+.+..+..+.   ..+++|+.|++++|.++...-..+...- ...++++
T Consensus       260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~  338 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVS  338 (362)
T ss_dssp             ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECC
T ss_pred             CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEec
Confidence            9999875433333   3578999999999998864333332   2379999999999998765444444311 3557776


Q ss_pred             cCc
Q 002167          294 YNN  296 (957)
Q Consensus       294 ~n~  296 (957)
                      .++
T Consensus       339 ~~~  341 (362)
T 2ra8_A          339 DSQ  341 (362)
T ss_dssp             SBC
T ss_pred             CCc
Confidence            665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.56  E-value=3.4e-06  Score=93.73  Aligned_cols=107  Identities=19%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167          539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV  617 (957)
Q Consensus       539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~  617 (957)
                      ..+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +...-...+.. .+|+.+.+.++.++.....+|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            33444555666655443 33333445555666666665433 22111122222 45555555555444444445555555


Q ss_pred             ccEEEccCCcCccCCCccccCCCCCcEEeCC
Q 002167          618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG  648 (957)
Q Consensus       618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  648 (957)
                      |+.++|..+ ++..-..+|.+|++|+.+.+.
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            666655433 332333455555556555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.44  E-value=1.2e-05  Score=89.42  Aligned_cols=99  Identities=9%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             cCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCc
Q 002167          540 TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVL  618 (957)
Q Consensus       540 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L  618 (957)
                      .+..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-...+.. .+|+.++|..+ ++..-..+|.++.+|
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            3444455555555432 32233344555666666666555554333334433 55666666533 443445677888888


Q ss_pred             cEEEccCCcCccCCCccccCCCC
Q 002167          619 VSLNLNGNRLKGPLPPSLVNCQY  641 (957)
Q Consensus       619 ~~L~Ls~n~l~~~~p~~l~~l~~  641 (957)
                      +.+.+..+ ++..-..+|.+|..
T Consensus       336 ~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          336 STISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CEEEECCc-cCEEchhHhhCCCC
Confidence            88877654 44334456666643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.8e-07  Score=96.85  Aligned_cols=84  Identities=29%  Similarity=0.347  Sum_probs=60.2

Q ss_pred             EEcccCcc---CccCcccccccCCCcEEECCCCcCCC--CCchhhhhccCCCEEECCCCcccccCcccCcCCC--CCCeE
Q 002167          763 IDLSSNRF---QRKIPEVVGKLNSLKSLNISHNNLTG--CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN--YLSVL  835 (957)
Q Consensus       763 L~Ls~N~l---~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L  835 (957)
                      ++++.|..   .+.++....+++.|+.|+||+|++++  .+|..++.+++|+.|+|++|++++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            55666632   22223333567888888888888888  5667788888888999998888875  3344444  88889


Q ss_pred             ECccCcccccCCC
Q 002167          836 NLSNNQLEGPIPG  848 (957)
Q Consensus       836 ~ls~N~l~g~ip~  848 (957)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999998887773

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=4.3e-07  Score=94.00  Aligned_cols=80  Identities=29%  Similarity=0.383  Sum_probs=68.6

Q ss_pred             hhcccceEEEcccCccCc--cCcccccccCCCcEEECCCCcCCCCCchhhhhcc--CCCEEECCCCcccccCcc------
Q 002167          755 RILTTFATIDLSSNRFQR--KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLT--ELESLDLSSNKLAGRIPT------  824 (957)
Q Consensus       755 ~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~--~L~~L~Ls~N~l~g~ip~------  824 (957)
                      +.++.|+.|+|++|+|++  .+|..++.+++|+.|+|++|++++.  +.+..+.  +|++|+|++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457899999999999999  6678888999999999999999986  4466666  999999999999998873      


Q ss_pred             -cCcCCCCCCeEE
Q 002167          825 -QLASLNYLSVLN  836 (957)
Q Consensus       825 -~l~~l~~L~~L~  836 (957)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367788888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=2.8e-07  Score=90.84  Aligned_cols=86  Identities=24%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             ccceEEEcccCccCcc----CcccccccCCCcEEECCCCcCCCC----CchhhhhccCCCEEEC--CCCccccc----Cc
Q 002167          758 TTFATIDLSSNRFQRK----IPEVVGKLNSLKSLNISHNNLTGC----IPSSLRNLTELESLDL--SSNKLAGR----IP  823 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~L~~L~~L~L--s~N~l~g~----ip  823 (957)
                      +.|+.|||++|.+...    +.+.+...++|+.|+|++|.++..    +...+...++|++|+|  ++|.+...    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            4566666666666542    233334445666677777766643    3444555566777777  66666543    23


Q ss_pred             ccCcCCCCCCeEECccCccc
Q 002167          824 TQLASLNYLSVLNLSNNQLE  843 (957)
Q Consensus       824 ~~l~~l~~L~~L~ls~N~l~  843 (957)
                      ..+...++|++|++++|++.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            34445566777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.12  E-value=1.1e-06  Score=86.51  Aligned_cols=17  Identities=24%  Similarity=0.364  Sum_probs=9.5

Q ss_pred             cCCCCCcEEECCCC-ccC
Q 002167          135 DQFPSLTLLDLCSC-NFT  151 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n-~l~  151 (957)
                      ...++|++|+|++| .+.
T Consensus        33 ~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             TTCTTCCEEECTTCTTCC
T ss_pred             hcCCCCCEEEecCCCCCC
Confidence            44555666666555 554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=9.3e-06  Score=77.70  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=43.1

Q ss_pred             CCCEEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCC----CCCcEEEccCCC-CCCCCCcccCCCCc
Q 002167          164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNI----TQLAYLDLSSNS-FSGHIPSSFSNLQQ  237 (957)
Q Consensus       164 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  237 (957)
                      +|++||+++|.++..--..+.++++|++|+|++|. +++.--..+. .+    ++|++|+|++|. +++..-..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            34555555554443333344555666666666653 4433233333 22    356666666653 55433344556667


Q ss_pred             ccEEeccCCC
Q 002167          238 LCYLDLDDNH  247 (957)
Q Consensus       238 L~~L~Ls~n~  247 (957)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=1.2e-05  Score=77.01  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             ccceEEEcccCccCccCcccccccCCCcEEECCCCc-CCCCCchhhhhc----cCCCEEECCCCc-ccccCcccCcCCCC
Q 002167          758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN-LTGCIPSSLRNL----TELESLDLSSNK-LAGRIPTQLASLNY  831 (957)
Q Consensus       758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L----~~L~~L~Ls~N~-l~g~ip~~l~~l~~  831 (957)
                      ..|+.||+++|.++..--..+..+++|+.|+|++|. ++..--..++.+    ++|++|||++|. ++..-=..++.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999998777788999999999999995 776544556654    379999999985 77654456788999


Q ss_pred             CCeEECccCc
Q 002167          832 LSVLNLSNNQ  841 (957)
Q Consensus       832 L~~L~ls~N~  841 (957)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0018  Score=58.87  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             EEECCCCcCC-CCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCC
Q 002167          786 SLNISHNNLT-GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP  847 (957)
Q Consensus       786 ~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip  847 (957)
                      .++-+++.++ ..+|..+.  .+|++|||++|+|+...+..|..+++|+.|+|++|++.+.+-
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4566666665 34454322  357777777777776666667777788888888888776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.63  E-value=0.00036  Score=68.00  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             CCccEEEccCC-cCCCC----CCccccCCCCCCeEEcCCCccccccCcccc-----CCcccEEECCCCcCC
Q 002167          545 CKLTYLRLSGN-HLEGP----LPPSLTNCVKLQFLDVGNNNLSGQIPECLG-----NSTLQVLDMRMNNFS  605 (957)
Q Consensus       545 ~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----~~~L~~L~Ls~n~l~  605 (957)
                      +.|++|+|++| ++...    +.+.+..-+.|+.|+|++|++.+.--..+.     +++|++|+|+.|.|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            45666666654 44321    223344445566666666665432222211     145555555555555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.52  E-value=0.00096  Score=65.01  Aligned_cols=86  Identities=21%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             ccCCCCCCeEEcCCC-ccccc----cCccccC-CcccEEECCCCcCCCC----CccccccCCCccEEEccCCcCccC---
Q 002167          565 LTNCVKLQFLDVGNN-NLSGQ----IPECLGN-STLQVLDMRMNNFSGS----LPQTFAKSCVLVSLNLNGNRLKGP---  631 (957)
Q Consensus       565 l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~---  631 (957)
                      +.+-+.|+.|+|++| ++...    +-+.+.. ..|+.|+|++|.+...    +.+.+..-+.|+.|+|++|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344567888888875 65431    2222333 6788888888877642    334445566777777777777642   


Q ss_pred             -CCccccCCCCCcEEeCCCC
Q 002167          632 -LPPSLVNCQYLEVLDVGNN  650 (957)
Q Consensus       632 -~p~~l~~l~~L~~L~ls~n  650 (957)
                       +.+.+..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             2234555566777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.49  E-value=0.004  Score=56.58  Aligned_cols=57  Identities=23%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             eEEEcccCccC-ccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167          761 ATIDLSSNRFQ-RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA  819 (957)
Q Consensus       761 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~  819 (957)
                      ..+|-++++++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36899999997 46776544  47999999999999888888999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	957
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-27
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 83/325 (25%), Positives = 115/325 (35%), Gaps = 43/325 (13%)

Query: 27  LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCC--SWDGVTCDSA 84
           LC+     ALLQ K+       ++LS             SW    DCC  +W GV CD+ 
Sbjct: 2   LCNPQDKQALLQIKK--DLGNPTTLS-------------SWLPTTDCCNRTWLGVLCDTD 46

Query: 85  TG--HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL 142
           T    V  LDLS   L    P  SSL  LP L  L +   +     I         +   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQLH 104

Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
               +        P   + I  L  LD S N+  G +P S S+L  L  +    N   G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG------------ 250
           IP S G+       + +S N  +G IP +F+NL         +                 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 251 ---------EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301
                                L  LDL +N   G +P   + L+ L  LN+ +NN  G+I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 302 PDMFTNLTQLSFLGLAYNELIGSIP 326
           P    NL +      A N+ +   P
Sbjct: 285 PQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 62/269 (23%), Positives = 93/269 (34%), Gaps = 9/269 (3%)

Query: 614 KSCVLVSLNLNGNRLKG--PLPPSLVNCQYLEVLDV-GNNQIDDTFPYWLDVLLELQVLI 670
           ++  + +L+L+G  L    P+P SL N  YL  L + G N +    P  +  L +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 671 LRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW---YLESFKAMMHGNNNSVEV 727
           +      G             L  +D S+N L+G LP               GN  S  +
Sbjct: 108 ITHTNVSGA--IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSL 787
                  S  +        +                   S         V+   +     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 788 NISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847
                N        +     L  LDL +N++ G +P  L  L +L  LN+S N L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 848 GGPQFNTFGNDSYSGNSGLCGFPLSKSCS 876
            G     F   +Y+ N  LCG PL  +C+
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 64/335 (19%), Positives = 100/335 (29%), Gaps = 72/335 (21%)

Query: 206 SLGNNITQLAYLDLSSNSFSG--HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL 263
                  ++  LDLS  +      IPSS +NL  L +L +   + +          +TQL
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
            YL ++    SG IP   S ++ L+ L+  YN   G +P   ++L  L  +    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
           +IP S      L        N                                       
Sbjct: 164 AIPDSYGSFSKLFTSMTISRN--------------------------------------- 184

Query: 384 NLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF 443
                      ++           L  +DLS N + G              I L  +   
Sbjct: 185 ----------RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 444 LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYL 503
                    KNL  L L +N + G+                     +P     L  +  L
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGT---------------------LPQGLTQLKFLHSL 273

Query: 504 DLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIP 538
           ++S N+L G+IPQ       +      N      P
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 9/260 (3%)

Query: 400 DNLRTQHQLELLDLSENQIGGR--IPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNL 455
           D     +++  LDLS   +     IPS + ++     + +    N +  I         L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 456 EYLHLDSNSLQGSLPDLPPHMVS---FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
            YL++   ++ G++PD    + +      S N+L+G +P S  +L ++  +    N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 513 QIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
            IP   G+   L T      N              L ++ LS N LEG       +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
           Q + +  N+L+  + +   +  L  LD+R N   G+LPQ   +   L SLN++ N L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 632 LPPSLVNCQYLEVLDVGNNQ 651
           + P   N Q  +V    NN+
Sbjct: 284 I-PQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 62/259 (23%), Positives = 96/259 (37%), Gaps = 9/259 (3%)

Query: 359 NLKVLSLSNISLSVSTKLTAN-SSFPNLSALDLSACN--ISEFPDNLRTQHQLELLDLSE 415
            +  L LS ++L     + ++ ++ P L+ L +   N  +   P  +    QL  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPP 474
             + G IP ++  I     ++   +    T    +    NL  +  D N + G++PD   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 475 HMVS----FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRM 530
                    +IS N LTG+IP +F NL+       S N L G      G+          
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-SRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG 590
            N              L  L L  N + G LP  LT    L  L+V  NNL G+IP+   
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 591 NSTLQVLDMRMNNFSGSLP 609
                V     N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.1 bits (235), Expect = 3e-21
 Identities = 78/420 (18%), Positives = 133/420 (31%), Gaps = 49/420 (11%)

Query: 422 IPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS 480
           I     D  +   ++  L +  +T  +       +  L  D   +               
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--------------- 56

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQT 540
               S+ G        L+++  ++ SNN L+  I      + L  + +  N      P  
Sbjct: 57  ---KSIDG-----VEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITPLA 107

Query: 541 NAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMR 600
           N              + +      L N   L  L++ +N +S         S  Q+    
Sbjct: 108 NLTNLTGLT----LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660
                  L        + +S N   +               LE L   NNQI D  P  +
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLA------KLTNLESLIATNNQISDITPLGI 217

Query: 661 DVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG 720
                L  L L  N+         T      L  +D ++NQ++ + PL  L     +  G
Sbjct: 218 LT--NLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 271

Query: 721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
            N         L G +          +  D+     L     + L  N      P  V  
Sbjct: 272 ANQIS--NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 840
           L  L+ L  ++N ++    SSL NLT +  L    N+++   P  LA+L  ++ L L++ 
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 73/385 (18%), Positives = 123/385 (31%), Gaps = 35/385 (9%)

Query: 233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292
           + L +     L   +    +  +   ++ Q+  L     G           L  L  +N 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 73

Query: 293 EYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELY 352
             N      P    NLT+L  + +  N++    P +    L    ++ +       ++  
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 353 DFAKLKNLKVLSLSNISLSVSTKLTANS------------SFPNLSALDLSACNISEFPD 400
                  L   ++S+IS                       +          + N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 401 NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP-WKNLEYLH 459
            L     LE L  + NQI    P  +       L EL L+ N L  I  L    NL  L 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLASLTNLTDLD 247

Query: 460 LDSNSLQGSLP-DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL 518
           L +N +    P      +    +  N ++   P     L+++  L+L+ N L    P   
Sbjct: 248 LANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS- 304

Query: 519 GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578
               L  L L  NN     P ++    KL  L  + N +      SL N   + +L  G+
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 579 NNLSGQIPECLGN-STLQVLDMRMN 602
           N +S   P  L N + +  L +   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 5e-17
 Identities = 76/418 (18%), Positives = 133/418 (31%), Gaps = 61/418 (14%)

Query: 129 ISSGFTD-QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH 187
           I+  FTD          L   N T ++  +  + +T L    L I S           L+
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-----DGVEYLN 66

Query: 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247
            L  ++  +N      P     N+T+L  + +++N  +   P +         L  +   
Sbjct: 67  NLTQINFSNNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 248 FVGEIPASL--------GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299
            +  +             N I+ ++ L   ++       +  ++L+ L  L       + 
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 300 K----IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFA 355
                   +   LT L  L    N++    P  I    NL E+ L+ +       +   A
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD---IGTLA 238

Query: 356 KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSE 415
            L NL  L L+N  +S    L   S    L+ L L A  IS                   
Sbjct: 239 SLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTN-----L 290

Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL-PWKNLEYLHLDSNSLQGSLPDLPP 474
                ++        +  L  L L  N ++ I  +     L+ L   +N +         
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD------- 343

Query: 475 HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMN 531
                            SS  NL++I +L   +N +S   P  L N + +  L L   
Sbjct: 344 ----------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 95  CSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSI 154
                  +   S +  L  L  L L FN+ +     S        L  L   +   +   
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS----SLTKLQRLFFANNKVSD-- 343

Query: 155 PPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
             SL  N+T + +L    N      P   +NL ++  L L   
Sbjct: 344 VSSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 28/289 (9%)

Query: 146 CSCNFTG---------SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
           C C+             +P  L  +      LDL  N         F NL  L  L L +
Sbjct: 8   CQCHLRVVQCSDLGLEKVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILIN 64

Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
           N      P +    + +L  L LS N            LQ+L   + +       +   L
Sbjct: 65  NKISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGL 316
             N   +  L  +    SG    +F  +++L ++ +   N       +  +LT+L    L
Sbjct: 124 --NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---L 178

Query: 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376
             N++     +S+  L NL ++ LSF++ S            +L+ L L+N  L      
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL--VKVP 235

Query: 377 TANSSFPNLSALDLSACNISEFPDN-------LRTQHQLELLDLSENQI 418
              +    +  + L   NIS    N          +     + L  N +
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 1e-18
 Identities = 59/273 (21%), Positives = 99/273 (36%), Gaps = 23/273 (8%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           ++P  L  +      LDL +N  +      F NL+ L  L L  N      P  F  L +
Sbjct: 24  KVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 311 LSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISL 370
           L  L L+ N+L          L  L        N    V    F  L  + V+ L    L
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 371 SVSTKL-TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
             S     A      LS + ++  NI+  P  L     L  L L  N+I     + +   
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLK-- 192

Query: 430 GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP-----PHMVSFSISNN 484
           G++ L +L LS N ++++D+    N  +L     +    +          ++    + NN
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 485 SLTGEIPSSFC------NLSSIQYLDLSNNSLS 511
           +++    + FC        +S   + L +N + 
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 6e-18
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 17/284 (5%)

Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
           P   LLDL +   T        N +  L  L L  N      P +F+ L +L  L L  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
               ++P  +   + +L   +         + +  + +  +  L  +     G    +  
Sbjct: 90  QL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQ 147

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
             + +L+Y+ ++    +        +L +   L+L+ N            L  L+ LGL+
Sbjct: 148 -GMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSN-----ISLSV 372
           +N +      S+    +L E++   +N          A  K ++V+ L N     I  + 
Sbjct: 204 FNSISAVDNGSLANTPHLRELH--LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 373 STKLTANSSFPNLSALDLSACNISEF---PDNLRTQHQLELLDL 413
                 N+   + S + L +  +  +   P   R  +    + L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 8e-17
 Identities = 62/298 (20%), Positives = 102/298 (34%), Gaps = 27/298 (9%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGF 133
           C    V C          DL    +  ++P +           L+L  N    ++I  G 
Sbjct: 10  CHLRVVQCS---------DLGLEKVPKDLPPD--------TALLDLQNNKI--TEIKDGD 50

Query: 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
                +L  L L +   +   P +    + +L  L LS N            L +LR  +
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
            +       +   L  N   +  L  +    SG    +F  +++L Y+ + D +    IP
Sbjct: 110 NEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIP 166

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSF 313
             L  +   L  L L  N  +    +S   L  L  L L +N+          N   L  
Sbjct: 167 QGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 314 LGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS 371
           L L  N+L+  +P  + +   +  +YL  +N S            N K  S S +SL 
Sbjct: 224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 7/259 (2%)

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           +L  +      L+    DLPP      + NN +T      F NL ++  L L NN +S  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 514 IPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQ 572
            P        LE L L  N  +    +      +L         +   +   L   + ++
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 573 FLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
                  +   +     G   L  + +   N +            L  L+L+GN++    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVD 187

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKL 692
             SL     L  L +  N I       L     L+ L L +N+     G          +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD---HKYI 244

Query: 693 RIMDCSHNQLTGVLPLWYL 711
           +++   +N ++ +    + 
Sbjct: 245 QVVYLHNNNISAIGSNDFC 263

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 45/323 (13%), Positives = 84/323 (26%), Gaps = 36/323 (11%)

Query: 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE 558
            ++ +  S+  L  ++P+ L       LDL+ N               L  L L  N + 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 559 GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVL 618
              P +    VKL+ L +  N L     +         +                   ++
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 619 VSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWG 678
           V L  N  +  G    +    + L  + + +  I         +   L  L L  N+   
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITK 185

Query: 679 PIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNY 738
               +                  L G+  L  L      +   +N        L      
Sbjct: 186 VDAAS------------------LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 739 YESIFLTMKGIDLQMERILTTFATIDLSSNRFQR------KIPEVVGKLNSLKSLNISHN 792
              +                    + L +N            P    K  S   +++  N
Sbjct: 228 NNKLV-----KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

Query: 793 NLT--GCIPSSLRNLTELESLDL 813
            +      PS+ R +    ++ L
Sbjct: 283 PVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 2e-13
 Identities = 60/304 (19%), Positives = 110/304 (36%), Gaps = 19/304 (6%)

Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNN 603
           C L  ++ S   LE  +P  L        LD+ NN ++        N   L  L +  N 
Sbjct: 10  CHLRVVQCSDLGLEK-VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
            S   P  FA    L  L L+ N+LK  LP  +   + L+ L V  N+I        + L
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGL 123

Query: 664 LELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNN 723
            ++ V+ L +N       +        KL  +  +   +T  +P     S   +    N 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNK 182

Query: 724 SVEVGYMRLPGSSNYYE--SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL 781
             +V    L G +N  +    F ++  +D            + L++N+  + +P  +   
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241

Query: 782 NSLKSLNISHNNLTG------CIPSSLRNLTELESLDLSSNKLAGR--IPTQLASLNYLS 833
             ++ + + +NN++       C P           + L SN +      P+    +   +
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

Query: 834 VLNL 837
            + L
Sbjct: 302 AVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 5/238 (2%)

Query: 607 SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLEL 666
            +P+          L+L  N++         N + L  L + NN+I    P     L++L
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 667 QVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVE 726
           + L L  N+        K      +LR+ +    ++   +     +     +  N     
Sbjct: 82  ERLYLSKNQLKEL--PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 727 VGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKS 786
                          I +    I    + +  +   + L  N+  +     +  LN+L  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 787 LNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 844
           L +S N+++     SL N   L  L L++NKL  ++P  LA   Y+ V+ L NN +  
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 48/261 (18%), Positives = 79/261 (30%), Gaps = 29/261 (11%)

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
            C L  +  +   L+  +P  L       +LD+ NN+I +        L  L  LIL +N
Sbjct: 9   QCHLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPG 734
           +               KL  +  S NQL  +         +  +H N             
Sbjct: 66  KISKISPGAFAP--LVKLERLYLSKNQLKELPEKMPKTLQELRVHEN------------- 110

Query: 735 SSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794
                    +T     +           +  +  +           +  L  + I+  N+
Sbjct: 111 --------EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNT 854
           T        +LTEL    L  NK+       L  LN L+ L LS N +     G      
Sbjct: 163 TTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 855 FGNDSYSGNSGLCGFPLSKSC 875
              + +  N+ L   P   + 
Sbjct: 220 HLRELHLNNNKLVKVPGGLAD 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 15/185 (8%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           ++L  + L  +   N +   + +L  + +A        I++      PSLT L L     
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----NITTIPQGLPPSLTELHLDGNKI 183

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
           T     SL   +  LA L LS NS       S +N   LR L L +N  V         +
Sbjct: 184 TKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--AD 240

Query: 211 ITQLAYLDLSSNSFSGHIPSSF------SNLQQLCYLDLDDNHF-VGEIPASLGNNITQL 263
              +  + L +N+ S    + F      +       + L  N     EI  S    +   
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 264 AYLDL 268
           A + L
Sbjct: 301 AAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 58/278 (20%), Positives = 90/278 (32%), Gaps = 13/278 (4%)

Query: 146 CSCNFTG--SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKI 203
            SC   G  ++P  +         + L  N       +SF     L  L L SN      
Sbjct: 16  TSCPQQGLQAVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL 263
            A+              +       P++F  L +L  L L D   + E+   L   +  L
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAAL 131

Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
            YL L  N        +F +L  L  L L  N         F  L  L  L L  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 324 SIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP 383
             P + F  L        F+N   ++     A L+ L+ L L++       +     ++ 
Sbjct: 192 VHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW- 249

Query: 384 NLSALDLSACNIS-EFPDNLRTQHQLELLDLSENQIGG 420
            L     S+  +    P  L      +L  L+ N + G
Sbjct: 250 -LQKFRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 9e-13
 Identities = 51/266 (19%), Positives = 86/266 (32%), Gaps = 9/266 (3%)

Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
           +P  +         + L  N  S    +SF   + L  L L  N       A+       
Sbjct: 26  VPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322
                  +       P++F  L +L  L+L+        P +F  L  L +L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 323 GSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF 382
                +  +L NLT ++L   N   SV    F  L +L  L L    ++           
Sbjct: 143 ALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIP-SWMWDIGVHTLIELDLSR 441
             ++    +    +   + L     L+ L L++N          +W      L +   S 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----WLQKFRGSS 257

Query: 442 NFLTSIDHLPWKNLEYLHLDSNSLQG 467
           + +           +   L +N LQG
Sbjct: 258 SEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-12
 Identities = 52/255 (20%), Positives = 85/255 (33%), Gaps = 6/255 (2%)

Query: 458 LHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC 517
                  LQ     +P       +  N ++    +SF    ++  L L +N L+      
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 518 LGNSTLETLDLRMNNFQGS--IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLD 575
                L       +N Q     P T     +L  L L    L+   P        LQ+L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 576 VGNNNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP 634
           + +N L     +   +   L  L +  N  S    + F     L  L L+ NR+    P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 635 SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRI 694
           +  +   L  L +  N +       L  L  LQ L L  N +   + D + R  +  L+ 
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW---VCDCRARPLWAWLQK 252

Query: 695 MDCSHNQLTGVLPLW 709
              S +++   LP  
Sbjct: 253 FRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 10/256 (3%)

Query: 382 FPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
                 + L    IS  P    R    L +L L  N +     +    + +   ++L  +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 441 RN--FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS---FSISNNSLTGEIPSSFC 495
                +          L  LHLD   LQ   P L   + +     + +N+L      +F 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554
           +L ++ +L L  N +S    +      +L+ L L  N      P       +L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAK 614
           N+L      +L     LQ+L + +N            + LQ      +    SLPQ  A 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 615 SCVLVSLNLNGNRLKG 630
             +     L  N L+G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 43/276 (15%), Positives = 77/276 (27%), Gaps = 28/276 (10%)

Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMN--NF 604
              + L GN +      S   C  L  L + +N L+           L       +    
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL 664
               P TF     L +L+L+   L+   P        L+ L + +N +          L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
            L  L L  NR                L  +    N++  V P  + +  + M       
Sbjct: 154 NLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL--- 208

Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL 784
                      +N   ++          ++        + L+ N +             L
Sbjct: 209 ----------FANNLSALPTEALAPLRALQ-------YLRLNDNPWV-CDCRARPLWAWL 250

Query: 785 KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG 820
           +    S + +   +P  L          L++N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 33/181 (18%), Positives = 51/181 (28%), Gaps = 10/181 (5%)

Query: 70  DADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKI 129
           D       G         +  L L  + L        +   L  L  L L  N  +   +
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISS--V 168

Query: 130 SSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189
                    SL  L L   N    + P    ++ +L  L L  N+       + + L  L
Sbjct: 169 PERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
           ++L L  N +V             L     SS+     +P   +         L  N   
Sbjct: 228 QYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQ 282

Query: 250 G 250
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 8/172 (4%)

Query: 685 TRVP---FPKLRIMDCSHNQLTGVLP-----LWYLESFKAMMHGNNNSVEVGYMRLPGSS 736
             VP       + +    N+++ V          L       +         +  L    
Sbjct: 24  QAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 737 NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTG 796
               S    ++ +D      L    T+ L     Q   P +   L +L+ L +  N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 797 CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
               + R+L  L  L L  N+++         L+ L  L L  N++    P 
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 42/235 (17%), Positives = 71/235 (30%), Gaps = 5/235 (2%)

Query: 642 LEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN- 700
            + + +  N+I             L +L L SN          T +   +   +  +   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 701 ---QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERIL 757
                     L  L +   +       +  G  R   +  Y       ++ +     R L
Sbjct: 94  RSVDPATFHGLGRLHTLH-LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817
                + L  NR           L+SL  L +  N +    P + R+L  L +L L +N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 818 LAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLS 872
           L+      LA L  L  L L++N         P +        S +   C  P  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (168), Expect = 8e-13
 Identities = 58/445 (13%), Positives = 107/445 (24%), Gaps = 27/445 (6%)

Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLD 244
           ++ LD+Q         A L   + Q   + L     +      I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 245 DNHF----VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
            N      V  +   L     ++  L L +   +G      S+  + L    E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNL 360
           + D    L     L          +        +   +           EL       N 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
             + +    L  S          +      +  ++     +  +  +L L       +G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 421 RIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS 480
                        L                         L +      L      +    
Sbjct: 244 AELCPGLLHPSSRLRT----LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQT 540
                 T   P        ++    +    S        N  L  L +  N  + +  + 
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 541 NAKG-----CKLTYLRLSGNHLEG----PLPPSLTNCVKLQFLDVGNNNLSGQIPECLG- 590
             +G       L  L L+   +       L  +L     L+ LD+ NN L       L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 591 -----NSTLQVLDMRMNNFSGSLPQ 610
                   L+ L +    +S  +  
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 3e-11
 Identities = 54/450 (12%), Positives = 110/450 (24%), Gaps = 19/450 (4%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSF----IGHIPSSFSNLHQLRHLDL 194
            +  LD+     + +    L   + Q   + L            I S+      L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 195 QSNNF----VGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250
           +SN      V  +   L     ++  L L +   +G      S+  +     L + H   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSD 121

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
            +    G  +     LD         +     +      L               +N   
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 311 LSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISL 370
                    + +   P  +  L   +    S +       +   A L+ L + S     +
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 371 SVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
            ++          +                       L   +  +               
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEI 490
           +     L+      +                S+ L  +   L   + +  + +  +    
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 491 PSSFCNLSSIQYLDLSNNSLSGQIPQCLG-----NSTLETLDLRMNNFQGSIPQTNAKG- 544
                  S ++ L L++  +S      L      N +L  LDL  N    +      +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 545 ----CKLTYLRLSGNHLEGPLPPSLTNCVK 570
               C L  L L   +    +   L    K
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 7e-09
 Identities = 47/442 (10%), Positives = 98/442 (22%), Gaps = 17/442 (3%)

Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN---NITQLAYLDL 170
           ++ L++   + + ++ +           ++ L  C  T +    + +       LA L+L
Sbjct: 4   IQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
             N              Q     +Q  +         G  +       L +        +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWL 290
              +       +   +         L       A  +  ++            +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
                     + D    L  L                 I             SN  G V 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410
           + +           L  + +                     +        N        L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLS---RNFLTSIDHLPWKNLEYLHLDSNSLQG 467
           L  +  + G ++ S        T                +  L   N          L  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 468 SLPDLPPHMVSFSISNNSLTGE----IPSSFCNLSSIQYLDLSNNSLSGQIPQCLG---- 519
            L      +    +++  ++      + ++     S++ LDLSNN L       L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 520 --NSTLETLDLRMNNFQGSIPQ 539
                LE L L    +   +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-08
 Identities = 53/485 (10%), Positives = 121/485 (24%), Gaps = 52/485 (10%)

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQHQLELLDL 413
           +++ L +    LS +              + L  C ++E         LR    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP 473
             N++G        D+GVH +++   + +            ++ L L +  L G+   + 
Sbjct: 63  RSNELG--------DVGVHCVLQGLQTPS----------CKIQKLSLQNCCLTGAGCGVL 104

Query: 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF 533
              +    +   L             +    L +     +  Q    S        + + 
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST 593
             + P           +  +G  +                       L  +      ++ 
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ---------LEALKLESCGVTSDNC 215

Query: 594 LQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653
             +  +  +  S       +     V +      L  P         +   +        
Sbjct: 216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 275

Query: 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713
                  + L EL +           +       P  +L  +       T      +   
Sbjct: 276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335

Query: 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRK 773
                      +    +   G     + +               +    + L+       
Sbjct: 336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPG-----------SVLRVLWLADCDVSDS 384

Query: 774 ----IPEVVGKLNSLKSLNISHNNLTGCIPSSL-----RNLTELESLDLSSNKLAGRIPT 824
               +   +   +SL+ L++S+N L       L     +    LE L L     +  +  
Sbjct: 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

Query: 825 QLASL 829
           +L +L
Sbjct: 445 RLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 5e-08
 Identities = 52/443 (11%), Positives = 109/443 (24%), Gaps = 20/443 (4%)

Query: 214 LAYLDLSSNSFS-GHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN---NITQLAYLDLS 269
           +  LD+     S          LQQ   + LDD          + +       LA L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 270 SNGFSGHIPSSF-----SNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
           SN               +   ++  L+L+     G    + ++  +        +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPN 384
           +  +  +LL    +          +E    +      + S+            +N+    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
                L              + +   +     +    I +    +    L    L    +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 445 TSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
             +          L        G        +     +  SL     +          L 
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 505 LSNNSLSGQIPQCLGNSTLETLDLRMNNF-QGSIPQTNAKGCKLTYLRLSGNHLEGPLPP 563
                  G   + L   +        ++F             +++  RL    +      
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 564 SLTNCVKLQFLDVGNNNLSGQIPECLG-----NSTLQVLDMRMNNFSGSLPQTFAKS--- 615
                  L+ L + + ++S      L      N +L+ LD+  N    +      +S   
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 616 --CVLVSLNLNGNRLKGPLPPSL 636
             C+L  L L        +   L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-07
 Identities = 43/409 (10%), Positives = 103/409 (25%), Gaps = 22/409 (5%)

Query: 454 NLEYLHLDSNSLQGS-LPDLPPHMV---SFSISNNSLTGE----IPSSFCNLSSIQYLDL 505
           +++ L +    L  +   +L P +       + +  LT      I S+     ++  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 506 SNNSLSGQIPQCLG------NSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG 559
            +N L      C+       +  ++ L L+     G+     +   +   L         
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLS 120

Query: 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLV 619
                      L    +       ++     + +    +   +                 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGP 679
                   L   L  S    + L++   G    +      +         +   +   G 
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 680 IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY--MRLPGSSN 737
           +G  +             +       +          ++    +  E+      L     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
                 L   G  L+   + +   T    S+               + +  +    +   
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 798 IPSSLRNLTELESLDLSSNKL----AGRIPTQLASLNYLSVLNLSNNQL 842
                +  + L  L L+   +       +   L + + L  L+LSNN L
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 59/448 (13%), Positives = 102/448 (22%), Gaps = 20/448 (4%)

Query: 238 LCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG----HIPSSFSNLQQLLWLNLE 293
           +  LD+          A L   + Q   + L   G +      I S+      L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 294 YNNFVGKIPD-----MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGS 348
            N             + T   ++  L L    L G+    +   L               
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQL 408
           +       L    +     +        + +++     A  L A    +           
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 409 ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGS 468
             + +    +                +  D  R+    +          L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST--LETL 526
               P  +   S        E   +      +  +  +  SL                 L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 527 DLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
              +      +     K C  T    S           L                     
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 587 ECLGNSTLQVLDMRMNNFSG----SLPQTFAKSCVLVSLNLNGNRLKGPLPPSLV----- 637
                S L+VL +   + S     SL  T   +  L  L+L+ N L       LV     
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 638 NCQYLEVLDVGNNQIDDTFPYWLDVLLE 665
               LE L + +    +     L  L +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 6e-07
 Identities = 58/455 (12%), Positives = 125/455 (27%), Gaps = 30/455 (6%)

Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG 467
           ++ LD+   ++     + +    +     + L    LT                   +  
Sbjct: 4   IQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEAR-------------CKDISS 49

Query: 468 SLPDLPPHMVSFSISNNSLTGEIPSSFC-----NLSSIQYLDLSNNSLSGQIPQCLGNST 522
           +L   P  +   ++ +N L                  IQ L L N  L+G     L ++ 
Sbjct: 50  ALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 108

Query: 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLS 582
                L+  +   ++            L      LE       +                
Sbjct: 109 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 168

Query: 583 GQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
               E   ++             G          + +      +     L   + +   L
Sbjct: 169 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 228

Query: 643 EVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQL 702
             L +G+N++ D     L   L      LR+   W      K      ++     S  +L
Sbjct: 229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 288

Query: 703 TGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFAT 762
           +        E  + +                 S ++  +       +  Q   +L    +
Sbjct: 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348

Query: 763 IDLSSNRFQRKIPEVVGKL-NSLKSLNISHNNLTG----CIPSSLRNLTELESLDLSSNK 817
            +   +   R++ + +G+  + L+ L ++  +++      + ++L     L  LDLS+N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 818 LAGRIPTQLAS-----LNYLSVLNLSNNQLEGPIP 847
           L      QL          L  L L +      + 
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 9e-07
 Identities = 56/438 (12%), Positives = 111/438 (25%), Gaps = 27/438 (6%)

Query: 263 LAYLDLSSNGFS-GHIPSSFSNLQQLLWLNLEYNNF----VGKIPDMFTNLTQLSFLGLA 317
           +  LD+     S          LQQ   + L+           I         L+ L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 318 YNELIGSIPSSIFELL-----NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSV 372
            NEL       + + L      + ++ L     +G+      + L+ L  L   ++S ++
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 373 STKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVH 432
                          L    C + +      +        L+           +      
Sbjct: 124 LGDAGLQLLCE---GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 433 TLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS 492
                               + L+       S             +        + ++  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 493 SFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552
                     L  S+   +  I +C   +       R+   + S+ + +  G +L     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF 612
                    P      + ++         S        N  L  L +  N    +  +  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 613 AKS-----CVLVSLNLNGNRLKG----PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVL 663
            +       VL  L L    +       L  +L+    L  LD+ NN + D     L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 664 LE-----LQVLILRSNRF 676
           +      L+ L+L    +
Sbjct: 421 VRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 146 CSCNFTGSIPPSLGNNITQLAYLDLSINSF----IGHIPSSFSNLHQLRHLDLQSNNF-- 199
                   +   LG   + L  L L+           + ++    H LR LDL +N    
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 200 --VGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC 239
             + ++  S+      L  L L    +S  +      L++  
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 783 SLKSLNISHNNLT-GCIPSSLRNLTELESLDLSSNKL----AGRIPTQLASLNYLSVLNL 837
            ++SL+I    L+       L  L + + + L    L       I + L     L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 838 SNNQLEG 844
            +N+L  
Sbjct: 63  RSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 333 LNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS---VSTKLTANSSFPNLSALD 389
           L++  + +     S +        L+  +V+ L +  L+        +A    P L+ L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 390 LSACNISE-----FPDNLRTQH-QLELLDLSENQIGGRIPSWMW 427
           L +  + +         L+T   +++ L L    + G     + 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 3e-04
 Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 178 HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNI---TQLAYLDLSSNSFSGHIPSSFS- 233
                      LR L L   +      +SL   +     L  LDLS+N            
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 234 ----NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS 270
                   L  L L D ++  E+   L         L + S
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 10/222 (4%)

Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
            +  S   ++    N T ++PP L  + T    L LS N       ++     +L  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
                           +  L       +                  +     + +  +P 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDL-----SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
                + +L  L L  N      P   +   +L  L+L  NN       +   L  L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAK 356
            L  N L  +IP   F    L   +L  + +  + E+  F +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 4/201 (1%)

Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           +   ++ D  +L    PDLP       +S N L     ++    + +  L+L    L+  
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573
                    +       +N   S+P        LT L +S N L      +L    +LQ 
Sbjct: 71  QVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMR-MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
           L +  N L    P  L  +          NN +            L +L L  N L   +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 633 PPSLVNCQYLEVLDVGNNQID 653
           P        L    +  N   
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 46/225 (20%), Positives = 73/225 (32%), Gaps = 29/225 (12%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
            + +N +   L   LPP L   +   +L +  N +       L     L  L L      
Sbjct: 12  HLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
                 +     P L  +D SHNQL  +  L        ++  + N              
Sbjct: 69  ----KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-------------- 110

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
                   +  + L   R L     + L  N  +   P ++     L+ L++++NNLT  
Sbjct: 111 -------RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842
               L  L  L++L L  N L   IP      + L    L  N  
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 9/206 (4%)

Query: 380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
           S   +   ++    N++  P +L       +L LSEN +     + +       L +L+L
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLM--PYTRLTQLNL 62

Query: 440 SRN---FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
            R     L     LP      L  +       L    P +    +S N LT     +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 497 LSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLR-MNNFQGSIPQTNAKGCKLTYLRLSGN 555
           L  +Q L L  N L    P  L  +          NN              L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNL 581
            L   +P        L F  +  N  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 11/183 (6%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           L LS + L+    +  +L    RL +LNL        +          +L +L     + 
Sbjct: 36  LHLSENLLYTFSLA--TLMPYTRLTQLNL-------DRAELTKLQVDGTLPVLGTLDLSH 86

Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
                  L         +     + +  +P                 N +  +P  L   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS 270
             +L  L L++N+ +       + L+ L  L L +N     IP     +   L +  L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS-HLLPFAFLHG 204

Query: 271 NGF 273
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 26/163 (15%), Positives = 43/163 (26%), Gaps = 1/163 (0%)

Query: 37  LQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCS 96
                L  + + + L+ +  +        +                          L+  
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105

Query: 97  WLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP 156
            +  N  ++  L  L  L +L   +   N  K                  + N    +P 
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 157 SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNF 199
            L N +  L  L L  NS    IP  F   H L    L  N +
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 37/238 (15%), Positives = 63/238 (26%), Gaps = 36/238 (15%)

Query: 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWL 290
             S +     ++ D  +    +P  L  + T    L LS N       ++     +L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVE 350
           NL+         D                         +  L        S      ++ 
Sbjct: 61  NLDRAELTKLQVDGTL--------------------PVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 351 LYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410
                 +   ++ SL   +L    +L       N           +  P  L    +LE 
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--------ELKTLPPGLLTPTPKLEK 152

Query: 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH--LPWKNLEYLHLDSNSLQ 466
           L L+ N +       +  +    L  L L  N L +I         L +  L  N   
Sbjct: 153 LSLANNNLTELPAGLLNGL--ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 778 VGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837
           V K+ S   +N    NLT  +P  L    +   L LS N L       L     L+ LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 838 SNNQ 841
              +
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
           + +   ++         +P  + K      L++S N L     ++L   T L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 817 K 817
           +
Sbjct: 66  E 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 35/277 (12%), Positives = 79/277 (28%), Gaps = 16/277 (5%)

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG-PL 632
           LD+   NL   +   L +  +       +     L + F     +  ++L+ + ++   L
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTL 63

Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKL 692
              L  C  L+ L +   ++ D     L     L  L L     +             +L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQ 752
             ++ S         +    +  +      N             +        +  +DL 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 753 MERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH-NNLTGCIPSSLRNLTELESL 811
              +L      +     +             L+ L++S   ++       L  +  L++L
Sbjct: 184 DSVMLKNDCFQEFFQLNY-------------LQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 812 DLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848
            +      G +     +L +L +       +  P  G
Sbjct: 231 QVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 9e-10
 Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 26/298 (8%)

Query: 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFV 200
             LDL   N    +   L +    +       +     +   FS   +++H+DL ++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIE 59

Query: 201 GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI 260
                 + +  ++L  L L     S  I ++ +    L  L+L                 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------ 107

Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
                    +        S    L      +    +    +  +   +TQL+  G   N 
Sbjct: 108 -----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162

Query: 321 LIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANS 380
               + + +    NL  + LS S    +    +F +L  L+ LSLS     +   L    
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 381 SFPNLSALDLSACNISEFPDNLRTQ------HQLELLDLSENQIGGRIPSWMWDIGVH 432
             P L  L +           L+        +      ++   IG +    +W I   
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCR 280

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 13/268 (4%)

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS 607
             L L+G +L   +   L +   +       + +   + E      +Q +D+  +    S
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 608 LPQTFAKSCV-LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN--NQIDDTFPYWLDVLL 664
                   C  L +L+L G RL  P+  +L     L  L++       +      L    
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
            L  L L     +      +  V      I   + +     L    L +         + 
Sbjct: 122 RLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKI-------PEV 777
                + L             ++ + L     +     ++L      + +          
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 778 VGKL-NSLKSLNISHNNLTGCIPSSLRN 804
           +  L  +L  L I+ ++ T     ++ N
Sbjct: 241 LQLLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 41/310 (13%), Positives = 89/310 (28%), Gaps = 41/310 (13%)

Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
           + LDL   N    +   L +    +       +     +   FS  + + ++DL ++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59

Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
                 + +  ++L  L L     S  I ++ +    L+ LNL   +   +        +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369
                 L  +         +   +      ++  N SG  +    + L  L     + + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI 429
           L +S                 S    ++        + L+ L LS           +   
Sbjct: 180 LDLSD----------------SVMLKNDCFQEFFQLNYLQHLSLSRC-------YDIIPE 216

Query: 430 GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE 489
            +  L E+                 L+ L +      G+L  L   +    I+ +  T  
Sbjct: 217 TLLELGEI---------------PTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261

Query: 490 IPSSFCNLSS 499
              +  N  +
Sbjct: 262 ARPTIGNKKN 271

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 2/125 (1%)

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQT 540
           ++  +L  ++     +   +       + +   + +      ++ +DL  +  + S    
Sbjct: 7   LTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 541 NAKGCK-LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDM 599
               C  L  L L G  L  P+  +L     L  L++   +   +       S+   LD 
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 600 RMNNF 604
              ++
Sbjct: 126 LNLSW 130

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 25/269 (9%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL--LDLCSC 148
           LDL+   LH ++          RL    +       S +     + F    +  +DL + 
Sbjct: 5   LDLTGKNLHPDV--------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 149 NFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG 208
               S    + +  ++L  L L        I ++ +    L  L+L   +   +      
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 209 NNITQ-------LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
            +              D +       +      + QL       N    ++   +     
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV-GKIPDMFTNLTQLSFLGLAYNE 320
            +      S          F  L  L  L+L     +  +       +  L  L     +
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL-----Q 231

Query: 321 LIGSIPSSIFELL--NLTEIYLSFSNFSG 347
           + G +P    +LL   L  + ++ S+F+ 
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 19/259 (7%)

Query: 326 PSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNL 385
           P     LL+   I            L +      ++ + LSN  + VST     S    L
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 386 SALDLSACNIS-EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
             L L    +S    + L     L  L+LS                   L EL+LS  F 
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 445 TSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS-------------NNSLTGEIP 491
            +  H+           +                 ++              +  L  +  
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 492 SSFCNLSSIQYLDLSN-NSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTY 549
             F  L+ +Q+L LS    +  +    LG   TL+TL +      G++         L +
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPH 250

Query: 550 LRLSGNHLEGPLPPSLTNC 568
           L+++ +H      P++ N 
Sbjct: 251 LQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 41/250 (16%), Positives = 72/250 (28%), Gaps = 40/250 (16%)

Query: 458 LHLDSNSLQGSLPD--LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP 515
           L L   +L   +    L   +++F    + +   +   F     +Q++DLSN+ +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 516 QCL--GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYL--RLSGNHLEGPLPPSLTNCVKL 571
             +    S L+ L L        I  T AK   L  L         E  L   L++C +L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 572 QFLDVGNNNLSGQI--------------------------------PECLGNSTLQVLDM 599
             L++       +                                       + + +   
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 600 RMNNFSGSLPQTFAKSCVLVSLNLNG-NRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPY 658
                     Q F +   L  L+L+    +       L     L+ L V     D T   
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 659 WLDVLLELQV 668
             + L  LQ+
Sbjct: 244 LKEALPHLQI 253

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 54/327 (16%), Positives = 97/327 (29%), Gaps = 19/327 (5%)

Query: 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247
           Q   L+L +N  +  +P    +    L  L  S NS +  +P    +L+ L   + +   
Sbjct: 39  QAHELEL-NNLGLSSLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 248 FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN 307
                P      ++      L     S  +     +   L  L     +           
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 308 LTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL-SFSNFSGSVELYDFAKLKNLKVLSL- 365
                   L +   I +  +S+ +L +L        +  +   EL +   L  L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 366 -----SNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
                +   L  S +             +L                  EL          
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 421 RIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS 480
                       +L EL++S N L  +  LP   LE L    N L   +P+LP ++    
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALP-PRLERLIASFNHLA-EVPELPQNLKQLH 330

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSN 507
           +  N L  E P       S++ L +++
Sbjct: 331 VEYNPLR-EFPDI---PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.8 bits (135), Expect = 5e-09
 Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 32/321 (9%)

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLD------- 598
           +   L L+   L   LP    +   L+ L    N+L+ ++PE   +    ++D       
Sbjct: 39  QAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 599 ---------MRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649
                    + ++N           S  L  ++++ N LK                +   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 650 NQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW 709
              +     +L  +      + +       +          +      +   LT +    
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 710 YLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNR 769
            L      +  +  ++ V    L       +S+       ++                N 
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS--ELPPNLYYLNA 271

Query: 770 FQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL 829
              +I  +     SL+ LN+S+N L   +P+    L   E L  S N L   +P    +L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELPQNL 326

Query: 830 NYLSVLNLSNNQLEGPIPGGP 850
                L++  N L    P  P
Sbjct: 327 ---KQLHVEYNPLRE-FPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.4 bits (134), Expect = 8e-09
 Identities = 55/344 (15%), Positives = 101/344 (29%), Gaps = 27/344 (7%)

Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ--TNAKGCKLTYLRL 552
           C       L+L+N  LS  +P+   +  LE+L    N+    +P+   + K   +    L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF 612
                  PL   L              N S      + N++L+ L     +         
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 613 AKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672
               +    NL           SL     L +  + +    +     L  L  L  L   
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPL-SLESIVAGNNILEELPELQNLPFLTTI 209

Query: 673 SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL 732
                              L + D     L  +            +    + +      L
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 733 PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHN 792
             SSN               +  +  +   +++S+N+   ++P +      L+ L  S N
Sbjct: 270 NASSNEIR-----------SLCDLPPSLEELNVSNNKL-IELPAL---PPRLERLIASFN 314

Query: 793 NLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836
           +L   +P   +NL +L    +  N L    P    S+  L + +
Sbjct: 315 HLAE-VPELPQNLKQL---HVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 49/331 (14%), Positives = 92/331 (27%), Gaps = 23/331 (6%)

Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
               L+L +   + S+P    +    L  L  S NS +  +P    +L  L   +     
Sbjct: 39  QAHELELNNLGLS-SLPELPPH----LESLVASCNS-LTELPELPQSLKSLLVDNNNLKA 92

Query: 199 FVGKIPA-SLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
                P                   + S        N       DL  +        +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
             + +L  L   +  ++ +          L   ++   N + +      NL  L+ +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT 377
            N L                             L      +N+                +
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 378 ANSS------FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGV 431
           +N         P+L  L++S   + E P       +LE L  S N +   +P        
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHL-AEVPELP----- 323

Query: 432 HTLIELDLSRNFLTSIDHLPWKNLEYLHLDS 462
             L +L +  N L     +P +++E L ++S
Sbjct: 324 QNLKQLHVEYNPLREFPDIP-ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 63/356 (17%), Positives = 116/356 (32%), Gaps = 32/356 (8%)

Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
           V  +   L         L+L++ G S  +P    +L+    L    N+   ++P++  +L
Sbjct: 29  VSRLRDCLDRQAH---ELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSL 80

Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368
             L         L    P           +     + +   +L +      LK++ + N 
Sbjct: 81  KSLLVDNNNLKALSDLPPL----------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 130

Query: 369 SLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
           SL     L  +  F       L      +    L   +           +   + S +  
Sbjct: 131 SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 190

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
             +   +    +  FLT+I            L  +    ++ D     +     + +   
Sbjct: 191 NNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 250

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKL 547
              + F  LS +       N+ S +I        +LE L++  N     +P   A   +L
Sbjct: 251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRL 306

Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603
             L  S NHL   +P    N   L+ L V  N L  + P+   +    V D+RMN+
Sbjct: 307 ERLIASFNHLAE-VPELPQN---LKQLHVEYNPLR-EFPDIPES----VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 46/328 (14%), Positives = 101/328 (30%), Gaps = 31/328 (9%)

Query: 358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQ 417
           +    L L+N+ LS     +     P+L +L  S  +++E P+  ++   L + + +   
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 418 IGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMV 477
           +    P   +    +  +E        + +  +   N     L              + +
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 478 SFSISNNSLTGEIPSSFCNLSS--------IQYLDLSNNSLSGQIPQCLGNSTLETLDLR 529
                  +L         N S              ++ N++  ++P+      L T+   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL 589
            N  +       +            +  E P   +  +  +  F  +     +       
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 590 GN---------STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQ 640
            N          +L+ L++  N     LP    +   L  L  + N L   +P    N  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-VPELPQN-- 325

Query: 641 YLEVLDVGNNQIDDTFPYWLDVLLELQV 668
            L+ L V  N +   FP   + + +L++
Sbjct: 326 -LKQLHVEYNPL-REFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 45/337 (13%), Positives = 97/337 (28%), Gaps = 24/337 (7%)

Query: 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
           Q   L+L++      +P    +    L  L  S N  +  +P    +L+ LL  N     
Sbjct: 39  QAHELELNNLGL-SSLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAK 356
                P +       + L         S    I    N  +           +   +   
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 357 LKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSEN 416
            +  ++ +L  ++   +   +         +L+      +   +    Q+   L  +  +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 417 QIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHM 476
               +    +        +  +   +       L + ++                    +
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI----------FSGLSEL 262

Query: 477 VSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS 536
                  N+ + EI S      S++ L++SNN L  ++P       LE L    N+    
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR--LERLIASFNHLA-E 318

Query: 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573
           +P+       L  L +  N L    P    +   L+ 
Sbjct: 319 VPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 51/339 (15%), Positives = 96/339 (28%), Gaps = 25/339 (7%)

Query: 286 QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNF 345
           Q   L L        +P++  +L  L     + N L   +P     L +L     +    
Sbjct: 39  QAHELELNNLGL-SSLPELPPHLESLV---ASCNSL-TELPELPQSLKSLLVDNNNLKAL 93

Query: 346 SGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ 405
           S    L ++  + N ++  L  +  S   K+    +       DL          N + +
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 406 HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSL 465
              EL +L          + +  +    L    +        +    +NL +L       
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLET 525
                         +++                +   +  +  S   ++P          
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN-------- 265

Query: 526 LDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQI 585
               +N     I         L  L +S N L   LP        L+ L    N+L+ ++
Sbjct: 266 -LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EV 319

Query: 586 PECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLN 624
           PE   N  L+ L +  N      P        +  L +N
Sbjct: 320 PELPQN--LKQLHVEYNPLR-EFPDIPES---VEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 47/334 (14%), Positives = 96/334 (28%), Gaps = 23/334 (6%)

Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368
            Q   L L    L  S+P       +L  +  S ++ +   EL +    ++LK L + N 
Sbjct: 38  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT---ELPEL--PQSLKSLLVDNN 88

Query: 369 SLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
           +L   + L     +  +S   L      +    L+              +   +      
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
                 +    +  FLT+I        +   L  +       +     +    +   LT 
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLT 548
               +    +               +       T      +   F        +   +L 
Sbjct: 209 IYADNNLLKTLPDLPPSLE-----ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 549 YLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL 608
                 N     +         L+ L+V NN L  ++P       L+ L    N+ +  +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR--LERLIASFNHLA-EV 319

Query: 609 PQTFAKSCVLVSLNLNGNRLKG--PLPPSLVNCQ 640
           P+       L  L++  N L+    +P S+ + +
Sbjct: 320 PELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 46/313 (14%), Positives = 88/313 (28%), Gaps = 24/313 (7%)

Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSIN 173
             +L L           S   +  P L  L     + T  +P    + +  L   + ++ 
Sbjct: 40  AHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNLK 91

Query: 174 SFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFS 233
           +     P           L+             +  +   L  L     S       +  
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 234 NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE 293
             +     +L     +     SL         L+    G +             L     
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 294 YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTE--------IYLSFSNF 345
            NN +  +PD+  +L  L+       +L     S  F  ++             L + N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 346 SGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ 405
           S +          +L+ L++SN  L         +  P L  L  S  +++E P+  +  
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPELPQ-- 324

Query: 406 HQLELLDLSENQI 418
             L+ L +  N +
Sbjct: 325 -NLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 60/326 (18%), Positives = 97/326 (29%), Gaps = 42/326 (12%)

Query: 405 QHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNS 464
             Q   L+L+   +   +P          L  L  S N LT +  LP ++L+ L +D+N+
Sbjct: 37  DRQAHELELNNLGL-SSLPELPPH-----LESLVASCNSLTELPELP-QSLKSLLVDNNN 89

Query: 465 LQGSLPDLPPHMVSFSISNNS-----------LTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
           L+ +L DLPP +    +SNN                I     +L  +  L  S   ++  
Sbjct: 90  LK-ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 514 IPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573
             Q      L+ L      +  +          L+   +   +      P L N   L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVS---------LNLN 624
           +   NN L            L V D  + +                              
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 625 GNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTK 684
            N     +         LE L+V NN++    P        L+ LI   N          
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHL-------- 316

Query: 685 TRVP--FPKLRIMDCSHNQLTGVLPL 708
             VP     L+ +   +N L     +
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREFPDI 342

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 480 SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ 539
            +++  LT  +      L  + +LDLS+N L    P       LE L    N  +     
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 540 TNAKGCKLTYLRLSGNHLEG-PLPPSLTNCVKLQFLDVGNNNLSG 583
            N    +   L L  N L+       L +C +L  L++  N+L  
Sbjct: 62  ANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 9e-08
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 437 LDLSRNFLTSIDHLPW-KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
           L L+   LT + HL     + +L L  N L+   P L        +  +    E      
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 496 NLSSIQYLDLSNNSL-SGQIPQCLGN-STLETLDLRMNNFQG 535
           NL  +Q L L NN L      Q L +   L  L+L+ N+   
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 549 YLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL 608
            L L+   L       L   + +  LD+ +N L    P       L+VL    N      
Sbjct: 2   VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 609 PQTFAKSCVLVSLNLNGNRLKG-PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667
                       L L  NRL+       LV+C  L +L++  N +         +   L 
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 668 VL 669
            +
Sbjct: 118 SV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
            L L+       +      L  + HLDL  N      P      +  L  L++   S + 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNA 54

Query: 227 HI-PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN------GFSGHIPS 279
                  +NL +L  L L +N            +  +L  L+L  N      G    +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 280 SFSNLQQLL 288
              ++  +L
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
            L L+    +  +      L  +  L+L +N      P     L  L  L    ++    
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVL--QASDNALE 56

Query: 325 IPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN--SSF 382
               +  L  L E+ L  +    S  +        L +L+L   SL     +        
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 383 PNLSAL 388
           P++S++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 361 KVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420
           +VL L++  L   T L        ++ LDLS   +   P  L     LE+L  S+N +  
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 421 RIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW----KNLEYLHLDSNSLQGSLPDLPPHM 476
                        L EL L  N L     +        L  L+L  NSL      +   +
Sbjct: 58  VDGVANL----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERL 112

Query: 477 VSFSISNNSL 486
                S +S+
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 5/123 (4%)

Query: 693 RIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQ 752
           R++  +H  LT +  L  L      +  ++N +      L                 ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTH-LDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 753 MERILTTFATIDLSSNRFQR-KIPEVVGKLNSLKSLNISHNNLT---GCIPSSLRNLTEL 808
               L     + L +NR Q+    + +     L  LN+  N+L    G        L  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 809 ESL 811
            S+
Sbjct: 120 SSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS--------------------- 800
            + L+       +   + +L  +  L++SHN L    P+                     
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 801 SLRNLTELESLDLSSNKLAG-RIPTQLASLNYLSVLNLSNNQLEG 844
            + NL  L+ L L +N+L        L S   L +LNL  N L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349
           L+L + +    +      L  ++ L L++N L    P+    L  L  + +  ++ +   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD 400
            +   A L  L+ L L N  L  S  +    S P L  L+L   ++ +   
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 16/222 (7%)

Query: 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677
            + +    + +   +  +  +   +  L      +       +  L  L  L L+ N+  
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737
                             +   N                     + +   G   L     
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
               I          +  +        LS    Q      +  L+ L +L    N ++  
Sbjct: 137 DLNQIT--------NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 798 IPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN 839
            P  L +L  L  + L +N+++   P  LA+ + L ++ L+N
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 31/232 (13%), Positives = 75/232 (32%), Gaps = 18/232 (7%)

Query: 301 IPDMF--TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
           I  +F    L     +    + +  ++  +  +L  +T +    +  +    +     L 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLN 63

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
           NL  L L +       ++T  +   NL+ +     + +   +         +  L     
Sbjct: 64  NLIGLELKD------NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478
                + +  +    ++ LDL++    S              ++     +       + +
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLR 529
               +N ++   P    +L ++  + L NN +S   P  L N S L  + L 
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 23/244 (9%)

Query: 125 NGSKISSGFTD-QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSF 183
             + I+  F D    +   +     N T ++  +  + IT L+     + +         
Sbjct: 5   QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-----EGV 59

Query: 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243
             L+ L  L+L+ N      P      IT+L       +       S+ + LQ +  LDL
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKITELEL-----SGNPLKNVSAIAGLQSIKTLDL 114

Query: 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD 303
                    P +  +N+  L             I +            L   N       
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYL-------DLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 304 MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVL 363
              NL++L+ L    N++    P  +  L NL E++L  +  S    L   A   NL ++
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL---ANTSNLFIV 222

Query: 364 SLSN 367
           +L+N
Sbjct: 223 TLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 41/247 (16%), Positives = 74/247 (29%), Gaps = 38/247 (15%)

Query: 332 LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS 391
           L N  +I    SN + +V     A L  +  LS     +   T +       NL  L+L 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 392 ACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP 451
              I++           E         G  + +     G+ ++  LDL+   +T +  L 
Sbjct: 72  DNQITDLAPLKNLTKITE-----LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 452 WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
             +   +     +   ++  L        +S  +      +   NLS +  L   +N +S
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 512 GQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKL 571
              P  L +                          L  + L  N +       L N   L
Sbjct: 187 DISP--LASLP-----------------------NLIEVHLKNNQISDV--SPLANTSNL 219

Query: 572 QFLDVGN 578
             + + N
Sbjct: 220 FIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 24/238 (10%), Positives = 72/238 (30%), Gaps = 9/238 (3%)

Query: 586 PECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL 645
              + + + +V   + +  +  +P    ++   + L     +L+     +      LE +
Sbjct: 2   HHRICHCSNRVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKI 58

Query: 646 DVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705
           ++  N + +     +   L     I           + +     P L+ +  S+  +  +
Sbjct: 59  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYES------IFLTMKGIDLQMERILTT 759
             +  + S + ++    +++ +  +                     ++ I          
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178

Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817
                  +N  +    +V    +    L+IS   +       L NL +L +    + K
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 26/233 (11%), Positives = 54/233 (23%), Gaps = 9/233 (3%)

Query: 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674
            C         +++   +P  L   +    L     ++            +L+ + +  N
Sbjct: 7   HCSNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 675 RFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY----- 729
                I             I     N L  + P  +           +N+          
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 730 -MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLN 788
              L       +               +      + L+ N  Q             +   
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 789 ISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQ 841
             +NNL           +    LD+S  ++       L +L  L   +  N +
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 6/224 (2%)

Query: 458 LHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQI--- 514
                + +     DLP + +        L      +F     ++ +++S N +   I   
Sbjct: 13  FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 515 PQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFL 574
                    E    + NN     P+       L YL +S   ++        + ++   L
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 575 DVGNNNLSGQIPECLGNSTLQ---VLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631
           D+ +N     I             +L +  N         F  + +      + N L+  
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675
                       +LD+   +I     Y L+ L +L+     + +
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 6/224 (2%)

Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
           EIP+ L  N      L             +FS    L  + +  N+ +  I     +   
Sbjct: 22  EIPSDLPRNAI---ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 311 LSFLGLAYNEL--IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368
                        +   P +   L NL  + +S +      +++    L+ + +    NI
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 369 SLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
           ++    + +          L L+   I E  +      QL+ L+LS+N     +P+ ++ 
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL 472
            G    + LD+SR  + S+     +NL+ L   S      LP L
Sbjct: 199 -GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 20/244 (8%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGF 133
           CS     C  +      +          IPS+          +L           I  G 
Sbjct: 8   CSNRVFLCQES-----KVT--------EIPSD----LPRNAIELRFVLTKL--RVIQKGA 48

Query: 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
              F  L  +++   +    I   + +N+ +L  + +   + + +I              
Sbjct: 49  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108

Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
           L SN  +  +P     +  Q   LD+  N     I  +         + L  N    +  
Sbjct: 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168

Query: 254 ASLGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS 312
            +   N TQL  L+LS N     +P   F      + L++              NL +L 
Sbjct: 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 228

Query: 313 FLGL 316
               
Sbjct: 229 ARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 146 CSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
              N    +P  + +  +    LD+S             NL +LR     + 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 40/233 (17%)

Query: 145 LCSCNFTG---------SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
           +C C+             IP  L  N      L   +         +FS    L  +++ 
Sbjct: 5   ICHCSNRVFLCQESKVTEIPSDLPRNAI---ELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61

Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
            N+ +  I A + +N+ +L  + +   +   +I              L  N  +  +P  
Sbjct: 62  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 256 LG--------------------------NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
                                           +   L L+ NG       +F+  Q    
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLS 341
              + NN      D+F   +    L ++    I S+PS   E L  L      
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTY 233

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 32/320 (10%), Positives = 86/320 (26%), Gaps = 37/320 (11%)

Query: 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG-----NSTLQVLDMR 600
            L    ++    +  +   L     ++ + +  N +  +    L         L++ +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNC-QYLEVLDVGNNQIDDTFPYW 659
                    +      +L+   L   +L               E L    ++       +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 660 LDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMH 719
           L           +  R    +   K     P LR + C  N+L       + ++F++   
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 720 GNNNSVEVGYMR-----------------LPGSSNYYESIFLTMKGIDLQMERILTTFAT 762
            +   +    +R                 L        +             +       
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 763 IDLSSNRFQRKIPEVVG------KLNSLKSLNISHNNLTGCIPSSL-----RNLTELESL 811
           + L+      +    V       +   L++L + +N +      +L       + +L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 812 DLSSNKLA--GRIPTQLASL 829
           +L+ N+ +    +  ++  +
Sbjct: 308 ELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 40/306 (13%), Positives = 77/306 (25%), Gaps = 13/306 (4%)

Query: 384 NLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI--GVHTLIELDLSR 441
           +L    ++  +       L     ++ + LS N IG     W+ +       L   + S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 442 NFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQ 501
            F   +     + L  L                       +   L   +           
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 502 YLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL 561
           + +        +I + L    +          +  I   N                   L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 562 PPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSL 621
                    ++   + +  L G              +   +  S +L         L  L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 622 NLNGNRLKGPLPPSLVNC------QYLEVLDVGNNQIDDTFPYWLDVLLE-----LQVLI 670
            LN   L      ++V+         L+ L +  N+I+      L  +++     L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 671 LRSNRF 676
           L  NRF
Sbjct: 309 LNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL----AGRIPTQLASLNYLSVLNLS 838
           SLK   I+  +    + + L     ++ + LS N +    A  +   +AS   L +   S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 839 NNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDEAPEPTTPTGFIEGDDASSW 898
           +          P+       +      L    LS +     A EP              +
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 899 FDW 901
              
Sbjct: 128 LHN 130

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 46/320 (14%), Positives = 84/320 (26%), Gaps = 30/320 (9%)

Query: 319 NELIGSIPSSIFELLNLTEIYLSFSNFS--GSVELYD-FAKLKNLKVLSLSNISLSVSTK 375
            E   S+ + + E  ++ EI LS +      +  L +  A  K+L++   S+I       
Sbjct: 17  TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---- 72

Query: 376 LTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI 435
                         +           L+   +   L           P+    +      
Sbjct: 73  -------------RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
              L   +L +    P    +                 P + S     N L       + 
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 496 NLSSI-QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554
                 + L       +G  P+ + +  LE L          +          + L ++ 
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAK 614
                     L +C        G   +     +   N  LQ L ++ N       +T   
Sbjct: 240 KSWPNLRELGLNDC---LLSARGAAAVVDAFSKL-ENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 615 SCV-----LVSLNLNGNRLK 629
                   L+ L LNGNR  
Sbjct: 296 VIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 30/314 (9%), Positives = 71/314 (22%), Gaps = 12/314 (3%)

Query: 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI---TQLAYLDLSS 270
           L    +++      + +       +  + L  N    E    L  NI     L   + S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 271 NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
                        L+ LL   L+                      + +      +     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 331 ELLNLTEIYLSFSNFSGSVEL--YDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSAL 388
               L     +    +               L+ +      L   +      +F +   L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 389 DLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID 448
                  +           LE L   +      +    +     + + + L         
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 449 HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC-----NLSSIQYL 503
            L    L      +     S  +    + +  +  N +  +   +        +  + +L
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 504 DLSNNSLSGQIPQC 517
           +L+ N  S +    
Sbjct: 308 ELNGNRFSEEDDVV 321

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240
           + ++N  + R LDL     +  I  +LG  + Q   +D S N         F  L++L  
Sbjct: 12  AQYTNAVRDRELDL-RGYKIPVIE-NLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
           L +++N                   +  +++          ++L+ L +L +  N    K
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 301 I---PDMFTNLTQLSFL 314
                 +   + Q+  L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
            N  +   LDL     I  I +  + L Q   +D  S+N + K+       + +L  L +
Sbjct: 15  TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDF-SDNEIRKLDGF--PLLRRLKTLLV 70

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS---NGFSGH 276
           ++N            L  L  L L +N  V         ++  L YL +          +
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 277 IPSSFSNLQQLLWLN 291
                  + Q+  L+
Sbjct: 131 RLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 480 SISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQ 539
            +    +   I +    L     +D S+N +  ++        L+TL +  N        
Sbjct: 24  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEG 81

Query: 540 TNAKGCKLTYLRLSGNHLEGPLPPS----LTNCVKLQFLDVGNNNLSGQIPECLGN-STL 594
            +     LT L L+ N L           L +   L  L     N        +     +
Sbjct: 82  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 141

Query: 595 QVLDMR 600
           +VLD +
Sbjct: 142 RVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 14/146 (9%)

Query: 375 KLTAN--------SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI----GGRI 422
           KLTA         ++      LDL    I    +   T  Q + +D S+N+I    G  +
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 423 PSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP--PHMVSFS 480
              +  + V+      +      ++  L    L    L        L  L    ++    
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLS 506
               +           +  ++ LD  
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 279 SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI 338
           + ++N  +   L+L        I ++   L Q   +  + NE+          L  L  +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 339 YLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEF 398
            ++ +      E      L +L  L L+N SL     L   +S  +L+ L +    ++  
Sbjct: 69  LVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 399 PDN----LRTQHQLELLDLSE 415
                  +    Q+ +LD  +
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 840
               + L++    +   I +    L + +++D S N++  R       L  L  L ++NN
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 841 QLEGPIPGGPQFNTFGNDSYSGNSGLCGFPLSKSCS 876
           ++     G  Q      +    N+ L         +
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 109

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 19/220 (8%)

Query: 315 GLAYNELIGSIPSSIFE------LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368
           G   +E I ++P+ I +           +  L   + + +V   +   L ++  +  +N 
Sbjct: 1   GPLGSETI-TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNS 56

Query: 369 SLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428
            +     +      PN++ L L+   +++          L+ L                 
Sbjct: 57  DI---KSVQGIQYLPNVTKLFLNGNKLTDIKPL----ANLKNLGWLFLDENKVKDLSSLK 109

Query: 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488
                                +    LE L+L +N +           +      ++   
Sbjct: 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 169

Query: 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
           +I      L+ +Q L LS N +S  +    G   L+ L+L
Sbjct: 170 DIVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTG 704
            ++    + D      + L  +  +I  ++      G        P +  +  + N+LT 
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFLNGNKLTD 82

Query: 705 VLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATID 764
           + PL  L++   +    N   ++  ++                     +  ++       
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPT 824
           L     +     V+ +L  L +L++  N ++  +P  L  LT+L++L LS N ++     
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR 194

Query: 825 QLASLNYLSVLNLSN 839
            LA L  L VL L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 19/211 (9%)

Query: 301 IPDMF--TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358
           I  +F      +     L    +  ++  +  EL ++ +I  + S+      +     L 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS---VQGIQYLP 68

Query: 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQI 418
           N+  L L+        KLT      NL  L      + E      +  +      S +  
Sbjct: 69  NVTKLFLNG------NKLTDIKPLANLKNLGW--LFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 419 GGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLP--PHM 476
              I      + +  L  L L  N +T I  L            ++    +  L     +
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

Query: 477 VSFSISNNSLTGEIPSSFCNLSSIQYLDLSN 507
            +  +S N ++     +   L ++  L+L +
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 19/208 (9%)

Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
           +   +    +L   S    +  +   L+ +  +   +++            +  +  L L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFL 75

Query: 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPS 279
           + N  +   P +        +LD +    +        +         LS         +
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLS-------SLKDLKKLKSLSLEHNGISDIN 128

Query: 280 SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIY 339
              +L QL  L L  N                       +  I  I   +  L  L  +Y
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS---LEDNQISDIVP-LAGLTKLQNLY 184

Query: 340 LSFSNFSGSVELYDFAKLKNLKVLSLSN 367
           LS ++ S   +L   A LKNL VL L +
Sbjct: 185 LSKNHIS---DLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 14/203 (6%)

Query: 398 FPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW-KNLE 456
           F D+   +      +L +  +   +        ++++ ++  + + + S+  + +  N+ 
Sbjct: 18  FSDDAFAE--TIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
            L L+ N L           ++   +   L  +        S      L + SL      
Sbjct: 72  KLFLNGNKLTD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
            +           +      I              LS    +      L    KLQ L +
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 577 GNNNLSGQIPECLGNSTLQVLDM 599
             N++S  +    G   L VL++
Sbjct: 186 SKNHISD-LRALAGLKNLDVLEL 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 39/189 (20%), Positives = 54/189 (28%), Gaps = 10/189 (5%)

Query: 74  CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLP-----RLRKLNLAFNDFNGSK 128
           C    V C       I  D+        +  N            RL  L       N   
Sbjct: 8   CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 129 ISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188
                  +  S         N    I   +   + QL  L+L  N     +P SF +L+ 
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
           L  L+L SN F       L      L    L+  +     PS   ++Q     DL  + F
Sbjct: 128 LTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRDVQ---IKDLPHSEF 182

Query: 249 VGEIPASLG 257
                 S G
Sbjct: 183 KCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
           +D +       IP           L L+DN         L   +  L  L+L  N  +G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLT 336
            P++F     +  L L  N        MF  L QL  L L  N++   +P S   L +LT
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 337 EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS 391
            + L+ + F+ +  L  FA+    K L+             A S   ++   DL 
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG------APSKVRDVQIKDLP 178

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 31/174 (17%)

Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPP--------------------- 474
            +D +   L  I      +   L L+ N L     D                        
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 475 -------HMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLD 527
                  H+    +  N +       F  L  ++ L+L +N +S  +P    +    T  
Sbjct: 72  NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

Query: 528 LRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581
              +N              L    L+G       P  + +   +Q  D+ ++  
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 14/196 (7%)

Query: 332 LLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS 391
           L    +  L  +N + +V   D   L  +  L    + +     +       NL+ ++ S
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 70

Query: 392 ACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP 451
              +++          +++L  +         + + ++   TL                 
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN----NQITDIDPLKN 126

Query: 452 WKNLEYLHLDSNSLQ-GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSL 510
             NL  L L SN++   S       +   + S+N +T   P    NL++++ LD+S+N +
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 184

Query: 511 SGQIPQCLGNSTLETL 526
           S  I      + LE+L
Sbjct: 185 SD-ISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL 413
            +K  +    +L    L     L A +    L+     A  +    +N+    +L  L+L
Sbjct: 16  MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENI---PELLSLNL 72

Query: 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL---PWKNLEYLHLDSNSLQGSLP 470
           S N++               L  L+LS N L S   L       LE L LD NSL  +  
Sbjct: 73  SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

Query: 471 DLP 473
           D  
Sbjct: 133 DQS 135

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 454 NLEYLHLDSNSLQGSLPDLP--PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
           +     LD   L+ S PDL      V  +  ++     +     N+  +  L+LSNN L 
Sbjct: 21  DGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 512 GQ--IPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPS---- 564
               +   +     L+ L+L  N  +        KG KL  L L GN L           
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 565 ---LTNCVKLQFLD 575
                   KL  LD
Sbjct: 139 SAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 169 DLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI 228
           +L     +  +    S  +      L         P  +  NI     L+  S+  +  +
Sbjct: 3   ELKPEQ-VEQLKLIMSKRYDGSQQALDLKGL-RSDPDLVAQNI--DVVLNRRSSMAAT-L 57

Query: 229 PSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
                N+ +L  L+L +N     +  +S+      L  L+LS N              +L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 288 LWLNLEYNNFVGKIPDMFTNLTQL 311
             L L+ N+      D  T ++ +
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 10/128 (7%)

Query: 91  LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
           LDL        + S+  L        LN   +            +  P L  L+L +   
Sbjct: 27  LDLK------GLRSDPDLVAQNIDVVLNRRSSMAA---TLRIIEENIPELLSLNLSNNRL 77

Query: 151 TG-SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
                  S+      L  L+LS N              +L  L L  N+           
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 210 NITQLAYL 217
                   
Sbjct: 138 ISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 22/117 (18%), Positives = 32/117 (27%), Gaps = 8/117 (6%)

Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
               LDL                     L+   +         +  NI +L  L+LS+N 
Sbjct: 23  SQQALDLKGL----RSDPDLVAQNIDVVLNRRSSMA--ATLRIIEENIPELLSLNLSNNR 76

Query: 273 FSGH--IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPS 327
                 + S       L  LNL  N    +         +L  L L  N L  +   
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 766 SSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC--IPSSLRNLTELESLDLSSNKLAGRIP 823
             +     +  +   +  L SLN+S+N L     + S ++    L+ L+LS N+L     
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 824 TQLASLNYLSVLNLSNNQLEGPIPGGPQFNTF 855
                   L  L L  N L         + + 
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 11/135 (8%)

Query: 389 DLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID 448
           +L    + +    +  ++      L        + S    +  +  + L+   +   ++ 
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLK----GLRSDPDLVAQNIDVVLNRRSSMAATLR 58

Query: 449 HLP--WKNLEYLHLDSNSLQGSLPDLP-----PHMVSFSISNNSLTGEIPSSFCNLSSIQ 501
            +      L  L+L +N L             P++   ++S N L  E          ++
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 502 YLDLSNNSLSGQIPQ 516
            L L  NSLS     
Sbjct: 119 ELWLDGNSLSDTFRD 133

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 14/174 (8%)

Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDL 390
                 ++ L              + LK  K L+LS  ++    K+++ S   NL  L L
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSL 77

Query: 391 SACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHL 450
               I +  +       LE L +S NQI                +  +   N+       
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 451 PWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
               LE L L  N L     +           NN+ +         L +++ LD
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKE-----------NNATSEYRIEVVKRLPNLKKLD 180

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 4/140 (2%)

Query: 454 NLEYLHLDSNSLQGSLPDLP--PHMVSFSISNNSLTGEIPSSFC-NLSSIQYLDLSNNSL 510
               L    +    SL  LP   ++    I N      +       L  ++ L +  + L
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 511 SGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPS-LTNCV 569
               P     +   +      N   S+     +G  L  L LSGN L        L    
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 570 KLQFLDVGNNNLSGQIPECL 589
           +     V    L       L
Sbjct: 129 EEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 3/133 (2%)

Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE--CLGNSTLQVLDMRMN 602
              + LR + +         L     L  L + N      +      G   L+ L +  +
Sbjct: 8   HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDV 662
                 P  F  +  L  LNL+ N L+     ++      E++  GN         WL  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 663 LLELQVLILRSNR 675
             E  +  +   +
Sbjct: 127 WEEEGLGGVPEQK 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	957
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.2

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6.9e-39  Score=348.03  Aligned_cols=294  Identities=32%  Similarity=0.505  Sum_probs=220.1

Q ss_pred             CCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCc--cccceEecCCC--CcEEEEEcCCCCCccc-
Q 002167           27 LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCC--SWDGVTCDSAT--GHVIGLDLSCSWLHGN-  101 (957)
Q Consensus        27 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c--~w~gv~c~~~~--~~v~~l~L~~~~l~g~-  101 (957)
                      -|+++||+||++||+++.++.               .+++|..++|||  .|+||+|+..+  +||++|||+++++.|. 
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~---------------~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC---------------cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC
Confidence            599999999999999998753               689999889999  49999998643  4899999999999885 


Q ss_pred             -cCCCCCccCCCCCCeeeCCC-CCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc
Q 002167          102 -IPSNSSLFFLPRLRKLNLAF-NDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI  179 (957)
Q Consensus       102 -~~~~~~l~~l~~L~~L~Ls~-n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~  179 (957)
                       +|+  +++.+++|++|+|++ |.+++. +|+.+ +++++|++|+|++|++.+..|..+.. +.+|+++++++|.+.+.+
T Consensus        67 ~lp~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGG-GGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCC
T ss_pred             CCCh--HHhcCccccccccccccccccc-ccccc-ccccccchhhhccccccccccccccc-hhhhcccccccccccccC
Confidence             455  777777788887775 666654 77776 77777777777777777666665655 777777777777777777


Q ss_pred             chhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC-cEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhh
Q 002167          180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL-AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN  258 (957)
Q Consensus       180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L-~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~  258 (957)
                      |..+.++++|+++++++|.+.+.+|..++ .+..+ +.+++++|++++..|..+.++..+ .++++++...+.+|..+..
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT
T ss_pred             chhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            77777777777777777777777777776 45444 777777777777777766666544 5777777777677666655


Q ss_pred             hccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceE
Q 002167          259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI  338 (957)
Q Consensus       259 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  338 (957)
                       +++++.+++++|.+.+.+| .+..+++|++|++++|+++|.+|..++++++|++|+|++|+++|.+|. ++++++|+.+
T Consensus       220 -~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l  296 (313)
T d1ogqa_         220 -DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS  296 (313)
T ss_dssp             -TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGG
T ss_pred             -ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHH
Confidence             7777777777777765544 466777777777777777777777777777777777777777777764 4666777777


Q ss_pred             ecCCCCC
Q 002167          339 YLSFSNF  345 (957)
Q Consensus       339 ~L~~n~l  345 (957)
                      ++++|+.
T Consensus       297 ~l~~N~~  303 (313)
T d1ogqa_         297 AYANNKC  303 (313)
T ss_dssp             GTCSSSE
T ss_pred             HhCCCcc
Confidence            7777753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.1e-31  Score=286.29  Aligned_cols=259  Identities=32%  Similarity=0.542  Sum_probs=203.6

Q ss_pred             CCccEEEccCCcCCC--CCCccccCCCCCCeEEcCC-CccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccE
Q 002167          545 CKLTYLRLSGNHLEG--PLPPSLTNCVKLQFLDVGN-NNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVS  620 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  620 (957)
                      ..++.|+|++|.+.+  .+|..++++++|++|+|++ |+++|.+|..++. ++|++|+|++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368888888888887  3678888888888888876 6777777776655 67777777777777666666666666777


Q ss_pred             EEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCC
Q 002167          621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN  700 (957)
Q Consensus       621 L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N  700 (957)
                      +++++|.+.+.+|..+.+++.|+.+++++|.+.+.+|..+..+..+                         ++.+++++|
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-------------------------~~~l~~~~n  184 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------------------------FTSMTISRN  184 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-------------------------CCEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccc-------------------------ccccccccc
Confidence            7777776666666666666666666666666666666555544332                         356677777


Q ss_pred             cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccc
Q 002167          701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK  780 (957)
Q Consensus       701 ~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~  780 (957)
                      +++|..|..+ .                                            ......++++++.+.|.+|..++.
T Consensus       185 ~l~~~~~~~~-~--------------------------------------------~l~~~~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         185 RLTGKIPPTF-A--------------------------------------------NLNLAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             EEEEECCGGG-G--------------------------------------------GCCCSEEECCSSEEEECCGGGCCT
T ss_pred             cccccccccc-c--------------------------------------------cccccccccccccccccccccccc
Confidence            7777666432 0                                            022346899999999999999999


Q ss_pred             cCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcc
Q 002167          781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSY  860 (957)
Q Consensus       781 l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~  860 (957)
                      +++|+.+++++|.+++.+| .++.+++|++|||++|+++|.+|+.++++++|++|||++|+|+|.||..+.+..+....+
T Consensus       220 ~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l  298 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHh
Confidence            9999999999999998876 588999999999999999999999999999999999999999999998888888888889


Q ss_pred             cCCcCCCCCCCCCCC
Q 002167          861 SGNSGLCGFPLSKSC  875 (957)
Q Consensus       861 ~gn~~lcg~~~~~~c  875 (957)
                      .||+.+||.|++ .|
T Consensus       299 ~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         299 ANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CSSSEEESTTSS-CC
T ss_pred             CCCccccCCCCC-CC
Confidence            999999999875 57

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.9e-25  Score=245.71  Aligned_cols=187  Identities=29%  Similarity=0.387  Sum_probs=115.9

Q ss_pred             CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEc
Q 002167          592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLIL  671 (957)
Q Consensus       592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L  671 (957)
                      ++++.+++++|.+++..|  +...++|++|++++|.++.  +..+..+++|+.|++++|.+++..+  +..+++|++|++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCEeec
Confidence            334444444444443322  2333444444444444442  1234444555555555555444332  444455555555


Q ss_pred             ccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhH
Q 002167          672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL  751 (957)
Q Consensus       672 ~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (957)
                      ++|++.+..+    ...++.++.+++++|.+++....                                           
T Consensus       271 ~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~~~~-------------------------------------------  303 (384)
T d2omza2         271 GANQISNISP----LAGLTALTNLELNENQLEDISPI-------------------------------------------  303 (384)
T ss_dssp             CSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGG-------------------------------------------
T ss_pred             cCcccCCCCc----ccccccccccccccccccccccc-------------------------------------------
Confidence            5555433221    13355666777777776652110                                           


Q ss_pred             HHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCC
Q 002167          752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY  831 (957)
Q Consensus       752 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~  831 (957)
                         ..+..++.|++++|++++..|  +..+++|+.|++++|++++ +| .++++++|++|++++|++++.+|  +.++++
T Consensus       304 ---~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~  374 (384)
T d2omza2         304 ---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTR  374 (384)
T ss_dssp             ---GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             ---chhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCC
Confidence               114677889999999987543  8889999999999999986 34 68999999999999999998765  788999


Q ss_pred             CCeEECccC
Q 002167          832 LSVLNLSNN  840 (957)
Q Consensus       832 L~~L~ls~N  840 (957)
                      |+.|+|++|
T Consensus       375 L~~L~L~~N  383 (384)
T d2omza2         375 ITQLGLNDQ  383 (384)
T ss_dssp             CSEEECCCE
T ss_pred             CCEeeCCCC
Confidence            999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.3e-24  Score=240.19  Aligned_cols=123  Identities=28%  Similarity=0.324  Sum_probs=74.6

Q ss_pred             CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEE
Q 002167          543 KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLN  622 (957)
Q Consensus       543 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  622 (957)
                      .+++|++|++++|++++..  .+..++.++.++++.|.+.+ ++.....++++.|++++|++++..  .+..+++|++|+
T Consensus       261 ~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         261 GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             ccccCCEeeccCcccCCCC--cccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence            3455666666666655432  25556666666666666653 222223356666677766666542  256667777777


Q ss_pred             ccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccc
Q 002167          623 LNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN  674 (957)
Q Consensus       623 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n  674 (957)
                      +++|++++ + ..+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       336 L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            77777664 2 246777777777777777776554  666666666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.2e-22  Score=216.10  Aligned_cols=273  Identities=21%  Similarity=0.231  Sum_probs=190.1

Q ss_pred             CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167          499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN  578 (957)
Q Consensus       499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  578 (957)
                      .++.++.++..++ .+|..+. ..+++|+|++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCC-ccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4566777777766 5555442 3677777777777765556677778888888888888777777788888888888888


Q ss_pred             CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc--cCCCccccCCCCCcEEeCCCCccccCc
Q 002167          579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK--GPLPPSLVNCQYLEVLDVGNNQIDDTF  656 (957)
Q Consensus       579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~n~l~~~~  656 (957)
                      |+++ .+|.... ..++.|++++|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.+... 
T Consensus        89 n~l~-~l~~~~~-~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-  165 (305)
T d1xkua_          89 NQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  165 (305)
T ss_dssp             SCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             CccC-cCccchh-hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-
Confidence            8776 4554322 45677777777776655555555666666666655432  22233445555555555555544321 


Q ss_pred             cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCC
Q 002167          657 PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSS  736 (957)
Q Consensus       657 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  736 (957)
                                              +.    ..+++|+.|++++|..++.+|..+                          
T Consensus       166 ------------------------~~----~~~~~L~~L~l~~n~~~~~~~~~~--------------------------  191 (305)
T d1xkua_         166 ------------------------PQ----GLPPSLTELHLDGNKITKVDAASL--------------------------  191 (305)
T ss_dssp             ------------------------CS----SCCTTCSEEECTTSCCCEECTGGG--------------------------
T ss_pred             ------------------------Cc----ccCCccCEEECCCCcCCCCChhHh--------------------------
Confidence                                    11    124567778888887776655321                          


Q ss_pred             CccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCC
Q 002167          737 NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN  816 (957)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (957)
                                        ..++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|++|..+++|++|+|++|
T Consensus       192 ------------------~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         192 ------------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             ------------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             ------------------hccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCC
Confidence                              12467788999999999988999999999999999999998 56889999999999999999


Q ss_pred             cccccCccc------CcCCCCCCeEECccCccc-ccCCCC
Q 002167          817 KLAGRIPTQ------LASLNYLSVLNLSNNQLE-GPIPGG  849 (957)
Q Consensus       817 ~l~g~ip~~------l~~l~~L~~L~ls~N~l~-g~ip~~  849 (957)
                      +|+..-+..      +..+.+|+.|++++|+++ +++|.+
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHh
Confidence            998643333      456788999999999985 566654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=213.43  Aligned_cols=227  Identities=22%  Similarity=0.195  Sum_probs=177.2

Q ss_pred             EEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCC-CCcc
Q 002167          574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG-NNQI  652 (957)
Q Consensus       574 L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls-~n~l  652 (957)
                      ++.++++++ .+|..+. +++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+.+++.++.++.. .|.+
T Consensus        16 v~c~~~~L~-~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCS-SCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCC-ccCCCCC-CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            344455544 4554332 456777777777775555667777778888888887777777777777777777664 4556


Q ss_pred             ccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceeccccc
Q 002167          653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL  732 (957)
Q Consensus       653 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~  732 (957)
                      +...|..|.++++|++|++++|.+....+...  ...++|+.+++++|++++..+..+                      
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~~~f----------------------  149 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDTF----------------------  149 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT----------------------
T ss_pred             ccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccccChhHh----------------------
Confidence            66667777788888888888887655443332  456788889999998876544221                      


Q ss_pred             CCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEE
Q 002167          733 PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLD  812 (957)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~  812 (957)
                                            ..++.|+.|++++|++++..+..|.++++|+.+++++|++++..|..|+++++|++||
T Consensus       150 ----------------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         150 ----------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             ----------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ----------------------ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence                                  1246789999999999999899999999999999999999999999999999999999


Q ss_pred             CCCCcccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167          813 LSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG  848 (957)
Q Consensus       813 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~  848 (957)
                      +++|++.+..|..++.+++|++|++++|++.|.++.
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999999999999999999999999999998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.1e-21  Score=206.09  Aligned_cols=262  Identities=22%  Similarity=0.251  Sum_probs=139.2

Q ss_pred             CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167          473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL  552 (957)
Q Consensus       473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  552 (957)
                      ++++++|++++|+++...+.+|.++++|++|++++|.+....|..                       +..+++|++|++
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-----------------------f~~l~~L~~L~l   86 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-----------------------FAPLVKLERLYL   86 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-----------------------TTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh-----------------------hhCCCccCEecc
Confidence            445555555555555444445666666666666666665444433                       333444444444


Q ss_pred             cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCC--CCCccccccCCCccEEEccCCcCc
Q 002167          553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFS--GSLPQTFAKSCVLVSLNLNGNRLK  629 (957)
Q Consensus       553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~  629 (957)
                      ++|+++. +|..  ....++.|++++|.+.+..+..+.. ..++.++...|...  ...+..+..+++|+.+++++|.++
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            4444442 2221  1234455555555554322222222 34445555554322  223345556666666666666665


Q ss_pred             cCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchH
Q 002167          630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW  709 (957)
Q Consensus       630 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~  709 (957)
                      . +|..+  +++|+.|++++|..++..+..+..++.+++|++++|.+.+..+...                         
T Consensus       164 ~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~-------------------------  215 (305)
T d1xkua_         164 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-------------------------  215 (305)
T ss_dssp             S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-------------------------
T ss_pred             c-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc-------------------------
Confidence            3 33332  4566777777776666666666665555555555444322111110                         


Q ss_pred             HHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEEC
Q 002167          710 YLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNI  789 (957)
Q Consensus       710 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  789 (957)
                                                                   ..+++|+.|+|++|+++ .+|+.|.++++|++|+|
T Consensus       216 ---------------------------------------------~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         216 ---------------------------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             ---------------------------------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             ---------------------------------------------cccccceeeeccccccc-ccccccccccCCCEEEC
Confidence                                                         11355666677777665 35667777777777777


Q ss_pred             CCCcCCCCCchh------hhhccCCCEEECCCCccc-ccC-cccCcCCCCCCe
Q 002167          790 SHNNLTGCIPSS------LRNLTELESLDLSSNKLA-GRI-PTQLASLNYLSV  834 (957)
Q Consensus       790 s~N~l~~~ip~~------l~~L~~L~~L~Ls~N~l~-g~i-p~~l~~l~~L~~  834 (957)
                      ++|+|+..-...      +..+.+|+.|+|++|++. +.+ |..|.-+.....
T Consensus       250 s~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             CCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence            777777543222      345677888888888774 333 444454444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.6e-22  Score=210.39  Aligned_cols=206  Identities=22%  Similarity=0.190  Sum_probs=153.3

Q ss_pred             CCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecc-cccccCcCCCcCCCCCCccE
Q 002167          472 LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLR-MNNFQGSIPQTNAKGCKLTY  549 (957)
Q Consensus       472 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~-~n~l~~~~~~~~~~l~~L~~  549 (957)
                      +++.+++|++++|+++...+.+|.++++|++|++++|.+.+..+..+... .++.+... .+.+....+..+..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            45677888888888887666788889999999999998886655555433 56666554 45566666777777788888


Q ss_pred             EEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcC
Q 002167          550 LRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL  628 (957)
Q Consensus       550 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  628 (957)
                      |++++|.+....+..+..+++|+.+++++|++++..+..+.. ++|++|++++|++++..+.+|.++++|+.+++++|++
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            888888877666677777778888888888887555555654 6778888888887777777777778888888888887


Q ss_pred             ccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEccccccc
Q 002167          629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW  677 (957)
Q Consensus       629 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~  677 (957)
                      ++..|..|.++++|++|++++|++.+..+.+|+.+++|++|++++|++.
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            7777777777778888888888877777777777777777776666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=198.27  Aligned_cols=204  Identities=24%  Similarity=0.250  Sum_probs=143.5

Q ss_pred             CCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeC
Q 002167          568 CVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDV  647 (957)
Q Consensus       568 l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  647 (957)
                      ...+.+++.+++.++ .+|..+. +++++|+|++|+|++..+..|..+++|++|+|++|+++. +| .++.+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            344555566666665 3554432 456667777776665555566667777777777776663 22 2455666666666


Q ss_pred             CCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCcee
Q 002167          648 GNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEV  727 (957)
Q Consensus       648 s~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~  727 (957)
                      ++|+++.. +..+..+++|                          +.+++++|.+.+..+..                  
T Consensus        85 s~N~l~~~-~~~~~~l~~L--------------------------~~L~l~~~~~~~~~~~~------------------  119 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPAL--------------------------TVLDVSFNRLTSLPLGA------------------  119 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTC--------------------------CEEECCSSCCCCCCSST------------------
T ss_pred             cccccccc-cccccccccc--------------------------ccccccccccceeeccc------------------
Confidence            66666543 3344444444                          44444444443322211                  


Q ss_pred             cccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccC
Q 002167          728 GYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTE  807 (957)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~  807 (957)
                                                +..+.+++.|++++|.+++..+..+..++.|+.|++++|++++..+..|+.+++
T Consensus       120 --------------------------~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_         120 --------------------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             --------------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             --------------------------cccccccccccccccccceeccccccccccchhcccccccccccCccccccccc
Confidence                                      011467788899999998888888889999999999999999999999999999


Q ss_pred             CCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCC
Q 002167          808 LESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP  847 (957)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip  847 (957)
                      |++|||++|+|+ .+|+++..+++|+.|+|++|++.+.+-
T Consensus       174 L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            999999999999 799999999999999999999988653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-20  Score=194.76  Aligned_cols=201  Identities=24%  Similarity=0.293  Sum_probs=126.9

Q ss_pred             CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      ...+..++.++++++ .+|+.+.   +++++|+|++|.+++..+..|.++++|++|+|++|+++ .+|. +. .+++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~-~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DG-TLPVLGT   81 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CS-CCTTCCE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cc-ccccccc
Confidence            344445566666665 5555443   35666666666665544455666666666666666665 3442 22 5666666


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  296 (957)
                      |++++|+++. .+..+.++++|++|++++|.+. .++......+.++++|++++|.+....+..+..+++|+.+++++|+
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc-cccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            6666666653 3455666666777777666665 3333333346677777777777665555566667777777777777


Q ss_pred             CcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167          297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG  347 (957)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  347 (957)
                      +++..+..|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+..
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            77666666777777777777777776 667777777777777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.3e-16  Score=174.28  Aligned_cols=96  Identities=33%  Similarity=0.456  Sum_probs=50.0

Q ss_pred             CCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCC
Q 002167          406 HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNS  485 (957)
Q Consensus       406 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  485 (957)
                      .++++||++++.++ .+|+.     .++|++|++++|+++.++. .+.+|+.|++++|.++ .++..++.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~-----~~~L~~L~Ls~N~l~~lp~-~~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL-----PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC-----CTTCSEEECCSSCCSSCCC-CCTTCCEEECCSSCCS-CCCSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCC-CCCCC-----CCCCCEEECCCCCCccccc-chhhhhhhhhhhcccc-hhhhhccccccccccccc
Confidence            35777888877776 45642     2566667777666665543 2345555555555544 223334444444444444


Q ss_pred             ccCCCCccccCCCCCCEEEcccCcCc
Q 002167          486 LTGEIPSSFCNLSSIQYLDLSNNSLS  511 (957)
Q Consensus       486 l~~~~p~~l~~l~~L~~L~L~~n~l~  511 (957)
                      +.. +|. +..+++|+.|++++|.+.
T Consensus       110 l~~-lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         110 LEK-LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSS-CCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccc-ccc-hhhhccceeecccccccc
Confidence            442 222 234444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.4e-16  Score=174.05  Aligned_cols=75  Identities=32%  Similarity=0.381  Sum_probs=46.7

Q ss_pred             eEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccC
Q 002167          761 ATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN  840 (957)
Q Consensus       761 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N  840 (957)
                      ...++..+.+.+.    ...+++|++|+|++|+++ .+|+.   +++|+.|+|++|+++ .+|+.   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            3445555555432    233567777777777777 45543   456777777777776 45643   346777778887


Q ss_pred             cccccCCC
Q 002167          841 QLEGPIPG  848 (957)
Q Consensus       841 ~l~g~ip~  848 (957)
                      +++ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            776 4553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=162.74  Aligned_cols=77  Identities=22%  Similarity=0.394  Sum_probs=64.7

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      .++|+.|++++|.+++..  .++++++|+.|+|++|++++. | .++++++|++|+|++|++++..|  ++++++|++|+
T Consensus       150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~  223 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             ccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEE
Confidence            467889999999987643  388999999999999999864 4 38999999999999999986543  88999999999


Q ss_pred             Ccc
Q 002167          837 LSN  839 (957)
Q Consensus       837 ls~  839 (957)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-19  Score=203.86  Aligned_cols=116  Identities=25%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             CCccEEEccCCcCCCCCCc----cccCCCCCCeEEcCCCccccc----cCcccc--CCcccEEECCCCcCCCC----Ccc
Q 002167          545 CKLTYLRLSGNHLEGPLPP----SLTNCVKLQFLDVGNNNLSGQ----IPECLG--NSTLQVLDMRMNNFSGS----LPQ  610 (957)
Q Consensus       545 ~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~----~p~~~~--~~~L~~L~Ls~n~l~~~----~p~  610 (957)
                      +.|+.+++++|.++.....    .+...++|++|+|++|++.+.    ++..+.  .+.|++|+|++|.++..    +++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            4677777777776543222    234556788888888887642    233332  25688888888887642    344


Q ss_pred             ccccCCCccEEEccCCcCccCCCc----ccc-CCCCCcEEeCCCCccccCccccc
Q 002167          611 TFAKSCVLVSLNLNGNRLKGPLPP----SLV-NCQYLEVLDVGNNQIDDTFPYWL  660 (957)
Q Consensus       611 ~~~~l~~L~~L~Ls~n~l~~~~p~----~l~-~l~~L~~L~ls~n~l~~~~p~~l  660 (957)
                      .+..+++|++|+|++|+++.....    .+. +.+.|+.|++.+|.+.......+
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            566677888888888887643222    222 34468888888887765544433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2e-19  Score=204.68  Aligned_cols=111  Identities=20%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCC----CcchhccCCCCCCEEEccCCcCCCCCchhhhh----C
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG----HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----N  210 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~----~  210 (957)
                      +|++||++++++++.--..+...++++++|+|++|.++.    .++..+..+++|++|+|++|.++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            455566666655532212222225666666666665542    23344556666666666666554211111211    2


Q ss_pred             CCCCcEEEccCCCCCCC----CCcccCCCCcccEEeccCCCCc
Q 002167          211 ITQLAYLDLSSNSFSGH----IPSSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       211 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            24566677766666533    2344566677777777777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=164.64  Aligned_cols=85  Identities=22%  Similarity=0.325  Sum_probs=35.9

Q ss_pred             CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc-chhccCCCCCCEEEccC-CcCCCCCchhhhhCCCCCcE
Q 002167          139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI-PSSFSNLHQLRHLDLQS-NNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~~l~~L~~  216 (957)
                      ++++|++++|+++ .+|...+.++++|++|++++|.+...+ +..|.++++++++.+.. |++. .++...+.++++|++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence            4455555555554 344332222555555555555444322 22344445555544432 2232 222222224444444


Q ss_pred             EEccCCCCC
Q 002167          217 LDLSSNSFS  225 (957)
Q Consensus       217 L~Ls~n~l~  225 (957)
                      +++++|.+.
T Consensus       108 l~l~~~~l~  116 (242)
T d1xwdc1         108 LLISNTGIK  116 (242)
T ss_dssp             EEEESCCCC
T ss_pred             cccchhhhc
Confidence            444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=162.20  Aligned_cols=218  Identities=18%  Similarity=0.135  Sum_probs=162.4

Q ss_pred             EcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEcc
Q 002167           92 DLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS  171 (957)
Q Consensus        92 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls  171 (957)
                      +.++.+++ .+|+  .+  .+++++|+|++|.++.  +|...|.++++|++|++++|.+.+.+|...+.++++++++++.
T Consensus        14 ~c~~~~l~-~iP~--~l--~~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          14 LCQESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EEESCSCS-SCCS--CS--CSCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             EEeCCCCC-CcCC--CC--CCCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            33444454 4554  33  2589999999999964  6766669999999999999999866776555559999999986


Q ss_pred             C-CcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCC-cccEEeccCCCCc
Q 002167          172 I-NSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ-QLCYLDLDDNHFV  249 (957)
Q Consensus       172 ~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~  249 (957)
                      . |.+....+..|.++++|+++++++|.+...-+......+..++.+...++.+....+..+.+++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5 5777777788999999999999999987433333333566777777788788766666777664 7889999999988


Q ss_pred             cccchhHhhhccCCcEE-ECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccC
Q 002167          250 GEIPASLGNNITQLAYL-DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY  318 (957)
Q Consensus       250 ~~ip~~l~~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  318 (957)
                       .++...+. ..+++.+ ++++|.++...+..|.++++|++|++++|+++...+..|.++++|+.+++..
T Consensus       167 -~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 -EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             -EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             -cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence             67766665 5565555 4677778754455678888999999999888866566677777777776644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=155.38  Aligned_cols=186  Identities=23%  Similarity=0.351  Sum_probs=89.7

Q ss_pred             CCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167          136 QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA  215 (957)
Q Consensus       136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~  215 (957)
                      .+.+|++|++.+|+++ .++ .+.. +++|++|++++|.+++..|  +.++++|+++++++|.++ .++ .+. ++++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~l~~-l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~-~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCC
T ss_pred             HcCCcCEEECCCCCCC-cch-hHhc-CCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccc-cccccc
Confidence            3455555555555555 342 3443 5566666666655554332  555555566655555554 232 233 455555


Q ss_pred             EEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccC
Q 002167          216 YLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN  295 (957)
Q Consensus       216 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  295 (957)
                      +++++++...+.  ..+...+.++.+.++.+.+....+  +.. +++|++|++++|.+.+.  ..++++++|++|++++|
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchhhh--hcc-ccccccccccccccccc--hhhcccccceecccCCC
Confidence            555555554432  223444555555555555442111  222 45555555555555422  12445555555555555


Q ss_pred             cCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEec
Q 002167          296 NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL  340 (957)
Q Consensus       296 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  340 (957)
                      ++++. + .++.+++|++|++++|++++ ++ .+..+++|++|++
T Consensus       184 ~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         184 KISDI-S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTL  224 (227)
T ss_dssp             CCCCC-G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEE
T ss_pred             ccCCC-h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEe
Confidence            55432 1 24445555555555555442 22 1344444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.2e-15  Score=150.72  Aligned_cols=77  Identities=30%  Similarity=0.485  Sum_probs=61.3

Q ss_pred             cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167          757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN  836 (957)
Q Consensus       757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  836 (957)
                      ++.++.+++++|.+++  +..++.+++|+.+++++|++++. + .++++++|+.|+|++|+++. +| .++++++|++|+
T Consensus       133 l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence            4567788888888875  34577788899999999998864 3 38889999999999999874 55 588899999999


Q ss_pred             Ccc
Q 002167          837 LSN  839 (957)
Q Consensus       837 ls~  839 (957)
                      |++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=8.1e-16  Score=151.60  Aligned_cols=113  Identities=27%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167          138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL  217 (957)
Q Consensus       138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L  217 (957)
                      +++++|+|++|+|++.++...+.++++|++|+|++|.+....+..+..+++|++|+|++|++. .+|...+.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCccccc
Confidence            456666666666664454444334777777777777776666666777777777777777766 3444434467777777


Q ss_pred             EccCCCCCCCCCcccCCCCcccEEeccCCCCccc
Q 002167          218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE  251 (957)
Q Consensus       218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  251 (957)
                      +|++|++++..|..|..+++|++|+|++|.+...
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccccc
Confidence            7777777766666777777777777777776643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.3e-14  Score=143.73  Aligned_cols=147  Identities=27%  Similarity=0.388  Sum_probs=62.8

Q ss_pred             CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167          137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY  216 (957)
Q Consensus       137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~  216 (957)
                      ++++++|++++|.+. .++ .+.. +++|++|++++|.+++..|  ++++++|++|++++|.+. .++ .+. ++++|++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~-l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLA-NLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSE
T ss_pred             hcCCCEEECCCCCCC-Ccc-cccc-CCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccc-ccccccc
Confidence            344444444444444 232 2332 4455555555554443222  444445555555544443 222 122 4444555


Q ss_pred             EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167          217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  296 (957)
                      |++++|.+...  ..+..+++|+.|++++|++. .++ .+.. +++|++|++.+|.+++. + .++++++|++|++++|+
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~-~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSG-LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTT-CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccc-cccccccccccccccCC-c-cccCCCCCCEEECCCCC
Confidence            55544444322  22444444555555444443 222 2222 44444444444444422 1 24444444444444444


Q ss_pred             Cc
Q 002167          297 FV  298 (957)
Q Consensus       297 l~  298 (957)
                      ++
T Consensus       184 i~  185 (199)
T d2omxa2         184 VS  185 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=2e-15  Score=148.69  Aligned_cols=131  Identities=20%  Similarity=0.212  Sum_probs=70.6

Q ss_pred             eEEcCCCccccccCccccCCcccEEECCCCcCCCCC-ccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCc
Q 002167          573 FLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL-PQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ  651 (957)
Q Consensus       573 ~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  651 (957)
                      +++.++++++ .+|..+. +++++|+|++|+|++.+ +..|..+++|+.|+|++|++.+..+..+..+++|++|++++|+
T Consensus        12 ~v~Cs~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcC-ccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            3444444444 3343321 34555555555554322 3445555556666666665555555555555666666666666


Q ss_pred             cccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCc
Q 002167          652 IDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP  707 (957)
Q Consensus       652 l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip  707 (957)
                      ++...|.+|.++++|++|+|++|++.+..+...  ..+++|+++++++|.+....+
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccc
Confidence            655555555556666666666665555444333  345666666777776665443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.3e-14  Score=145.02  Aligned_cols=37  Identities=30%  Similarity=0.342  Sum_probs=14.5

Q ss_pred             ccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCc
Q 002167          260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV  298 (957)
Q Consensus       260 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  298 (957)
                      +++|+++++++|.+++. + .+.++++|++|++++|+++
T Consensus       155 l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         155 LTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence            34444444444444321 1 1334444444444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.1e-14  Score=142.09  Aligned_cols=164  Identities=32%  Similarity=0.431  Sum_probs=127.7

Q ss_pred             ccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCC
Q 002167          108 LFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH  187 (957)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  187 (957)
                      ...++++++|++++|.+..  + +++ +.+++|++|++++|+++ .++. +.. +++|++|++++|.+... + .+.+++
T Consensus        36 ~~~l~~l~~L~l~~~~i~~--l-~~l-~~l~nL~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~l~~n~~~~~-~-~l~~l~  106 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS--I-DGV-EYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIADI-T-PLANLT  106 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC--C-TTG-GGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC-G-GGTTCT
T ss_pred             HHHhcCCCEEECCCCCCCC--c-ccc-ccCCCcCcCcccccccc-Cccc-ccC-Ccccccccccccccccc-c-cccccc
Confidence            3467888999999988865  3 345 78899999999999988 4554 665 89999999999987643 3 488899


Q ss_pred             CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167          188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD  267 (957)
Q Consensus       188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  267 (957)
                      +|++|++++|.... + ..+. .+++|+.|++++|++.. + +.+..+++|++|++.+|+++ .++. +.. +++|++|+
T Consensus       107 ~L~~L~l~~~~~~~-~-~~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~~-l~~-l~~L~~L~  178 (199)
T d2omxa2         107 NLTGLTLFNNQITD-I-DPLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLKP-LAN-LTTLERLD  178 (199)
T ss_dssp             TCSEEECCSSCCCC-C-GGGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCGG-GTT-CTTCCEEE
T ss_pred             cccccccccccccc-c-cccc-hhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCcc-ccC-CCCCCEEE
Confidence            99999999888763 2 2344 78999999999998874 3 35888999999999999987 4543 444 89999999


Q ss_pred             CcCCcCCccCcccccCcCCCcEE
Q 002167          268 LSSNGFSGHIPSSFSNLQQLLWL  290 (957)
Q Consensus       268 Ls~n~l~~~~p~~l~~l~~L~~L  290 (957)
                      +++|++++ ++ .++.+++|++|
T Consensus       179 ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCCC-Cc-cccCCCCCCcC
Confidence            99999875 33 57888888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.4e-16  Score=161.60  Aligned_cols=224  Identities=17%  Similarity=0.148  Sum_probs=144.6

Q ss_pred             EEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEE
Q 002167           90 GLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD  169 (957)
Q Consensus        90 ~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~  169 (957)
                      .+||++..+.+.+..  .+.. ..+..+.++....... + ... ....+|++||+++|.+.+.....+...+++|++|+
T Consensus         4 ~lDLs~~~l~~~~l~--~l~~-~~~~~lrl~~~~~~~~-~-~~~-~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           4 TLDLTGKNLHPDVTG--RLLS-QGVIAFRCPRSFMDQP-L-AEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             EEECTTCBCCHHHHH--HHHH-TTCSEEECTTCEECSC-C-CSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             EEECCCCCCCchHHH--HHHh-ccceEeeccccccccc-h-hhh-ccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            568887766533211  1111 2345566655443321 1 112 35568999999998887555555555689999999


Q ss_pred             ccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCCCCCcEEEccCCC-CCCC-CCcccCC-CCcccEEeccC
Q 002167          170 LSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNITQLAYLDLSSNS-FSGH-IPSSFSN-LQQLCYLDLDD  245 (957)
Q Consensus       170 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L~Ls~n~-l~~~-~p~~l~~-l~~L~~L~Ls~  245 (957)
                      |++|.+.+..+..++.+++|++|++++|. +++..-..+.+++++|++|++++|. +++. +...+.. .++|+.|++++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            99998887778888888999999998864 4432223344578889999998864 4321 1122222 46788888887


Q ss_pred             CC--CccccchhHhhhccCCcEEECcCC-cCCccCcccccCcCCCcEEEeccC-cCcccCCccccccCcCceeeccCC
Q 002167          246 NH--FVGEIPASLGNNITQLAYLDLSSN-GFSGHIPSSFSNLQQLLWLNLEYN-NFVGKIPDMFTNLTQLSFLGLAYN  319 (957)
Q Consensus       246 n~--l~~~ip~~l~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n  319 (957)
                      +.  ++......+...+++|++|++++| .+++.....+.++++|++|++++| .+++.....++++++|++|+++++
T Consensus       158 ~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            53  433323344445788888888876 466666677778888888888875 455555555667777777777766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-15  Score=158.20  Aligned_cols=183  Identities=19%  Similarity=0.203  Sum_probs=85.0

Q ss_pred             CCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCC-CCccccchhHhhhccCCc
Q 002167          186 LHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-HFVGEIPASLGNNITQLA  264 (957)
Q Consensus       186 l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~ip~~l~~~l~~L~  264 (957)
                      ..+|++||+++|.+.+.....+..++++|++|+++++.+++..+..++++++|++|++++| .++...-..+...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3455555555555443333333345555555555555555444455555556666666554 233211122333356666


Q ss_pred             EEECcCCc-CCcc-CcccccC-cCCCcEEEeccCc--Cccc-CCccccccCcCceeeccCCc-CCCCCCcchhcccCCce
Q 002167          265 YLDLSSNG-FSGH-IPSSFSN-LQQLLWLNLEYNN--FVGK-IPDMFTNLTQLSFLGLAYNE-LIGSIPSSIFELLNLTE  337 (957)
Q Consensus       265 ~L~Ls~n~-l~~~-~p~~l~~-l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~  337 (957)
                      +|++++|. ++.. +...+.. .++|+.|+++++.  ++.. +......+++|++|++++|. +++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            66666542 2211 1111222 3456666665432  2211 11222345556666665543 44444445555556666


Q ss_pred             EecCCCCCcccccchhhhcCCCCcEEEcccc
Q 002167          338 IYLSFSNFSGSVELYDFAKLKNLKVLSLSNI  368 (957)
Q Consensus       338 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~  368 (957)
                      |+++++.-........++.+++|+.|++.++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6665542221222233445555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-13  Score=127.53  Aligned_cols=127  Identities=22%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      .++.+||+|+|++|+++ .+|..... +++|++|+|++|.++. ++ .+..+++|++|++++|+++ .++..++..+++|
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~-l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGAT-LDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGG-TTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccc-cccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCcccccccccc
Confidence            56778888888888887 67654444 8888888888888874 33 4788888888888888887 5555555478888


Q ss_pred             cEEEccCCCCCCCCC-cccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEE
Q 002167          215 AYLDLSSNSFSGHIP-SSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLD  267 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~  267 (957)
                      ++|++++|.++.... ..+..+++|++|++++|.++ ..|.   .+...+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            888888888874321 35677888888888888776 4442   2223377777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.3e-12  Score=117.44  Aligned_cols=101  Identities=21%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCC-CcccCCCCcccE
Q 002167          162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI-PSSFSNLQQLCY  240 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~  240 (957)
                      +++|++|++++|.++ .+|..++.+++|++|++++|.++ .+| .+. .+++|++|++++|+++... ...++.+++|++
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccc-cccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            444444444444443 22333444444444444444443 222 122 4444444444444444221 123444555555


Q ss_pred             EeccCCCCcc--ccchhHhhhccCCcEE
Q 002167          241 LDLDDNHFVG--EIPASLGNNITQLAYL  266 (957)
Q Consensus       241 L~Ls~n~l~~--~ip~~l~~~l~~L~~L  266 (957)
                      |++++|.+++  .++..+...+++|+.|
T Consensus        95 L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          95 LNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            5555555441  1223333335555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.3e-13  Score=125.02  Aligned_cols=128  Identities=22%  Similarity=0.276  Sum_probs=81.7

Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccC
Q 002167          183 FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ  262 (957)
Q Consensus       183 l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~  262 (957)
                      +.++.+|++|+|++|+++ .++... ..+++|++|++++|.++..  +.+..+++|++|++++|+++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            456667777777777776 455433 3677788888888877733  34777788888888888877 566555555788


Q ss_pred             CcEEECcCCcCCccC-cccccCcCCCcEEEeccCcCcccC---CccccccCcCceee
Q 002167          263 LAYLDLSSNGFSGHI-PSSFSNLQQLLWLNLEYNNFVGKI---PDMFTNLTQLSFLG  315 (957)
Q Consensus       263 L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~  315 (957)
                      |++|++++|.+.... ...+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888888776421 134566677777777777665321   11244445555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=5.6e-13  Score=144.29  Aligned_cols=110  Identities=18%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             ccCCcEEECcCCcCCcc-----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCceeeccCCcCCCCCCcc--
Q 002167          260 ITQLAYLDLSSNGFSGH-----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFLGLAYNELIGSIPSS--  328 (957)
Q Consensus       260 l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~--  328 (957)
                      .+.|++|++++|.+...     +...+..+++|++|++++|.+...    +...+..+++|++|++++|.+++.....  
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            44555555555554421     122344455555555555554321    2233445555555555555554321111  


Q ss_pred             --hhc--ccCCceEecCCCCCcccccc---hhh-hcCCCCcEEEccccc
Q 002167          329 --IFE--LLNLTEIYLSFSNFSGSVEL---YDF-AKLKNLKVLSLSNIS  369 (957)
Q Consensus       329 --l~~--l~~L~~L~L~~n~l~~~~~~---~~l-~~l~~L~~L~L~~~~  369 (957)
                        +..  .+.|++|++++|.+......   ..+ .++++|+.|++++|.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence              111  23456666666655421100   011 234555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=4.5e-12  Score=113.81  Aligned_cols=117  Identities=26%  Similarity=0.328  Sum_probs=85.8

Q ss_pred             CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167          115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL  194 (957)
Q Consensus       115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  194 (957)
                      |+|+|++|+++.  ++ .+ +.+++|++|++++|.++ .+|+.++. +++|++|++++|.+++. | .+.++++|++|++
T Consensus         1 R~L~Ls~n~l~~--l~-~l-~~l~~L~~L~ls~N~l~-~lp~~~~~-l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HL-EQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALENV-D-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS--CC-CG-GGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC--Cc-cc-ccCCCCCEEECCCCccC-cchhhhhh-hhccccccccccccccc-C-ccccccccCeEEC
Confidence            578888888864  33 35 78888888888888887 78877776 88888888888888753 4 4888888889998


Q ss_pred             cCCcCCCCCc--hhhhhCCCCCcEEEccCCCCCCCC---CcccCCCCcccEE
Q 002167          195 QSNNFVGKIP--ASLGNNITQLAYLDLSSNSFSGHI---PSSFSNLQQLCYL  241 (957)
Q Consensus       195 ~~n~l~~~~p--~~l~~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L  241 (957)
                      ++|++.. ++  ..+. .+++|++|++++|.+++..   ......+++|+.|
T Consensus        73 ~~N~i~~-~~~~~~l~-~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQ-SAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCS-SSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCC-CCCchhhc-CCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888873 33  3444 7888899999888876321   2223345666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=3.1e-13  Score=146.43  Aligned_cols=192  Identities=18%  Similarity=0.158  Sum_probs=104.2

Q ss_pred             CCCCCcEEEccCCCCCCCC----CcccCCCCcccEEeccCCCCccccchhH------------hhhccCCcEEECcCCcC
Q 002167          210 NITQLAYLDLSSNSFSGHI----PSSFSNLQQLCYLDLDDNHFVGEIPASL------------GNNITQLAYLDLSSNGF  273 (957)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~ip~~l------------~~~l~~L~~L~Ls~n~l  273 (957)
                      .+++|++|+|++|.++...    ...+...++|++|++++|.+...-...+            ....+.|+.+++++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            4455666666666555432    2223345666777776666542111111            12256788888888877


Q ss_pred             Ccc----CcccccCcCCCcEEEeccCcCccc-----CCccccccCcCceeeccCCcCCCC----CCcchhcccCCceEec
Q 002167          274 SGH----IPSSFSNLQQLLWLNLEYNNFVGK-----IPDMFTNLTQLSFLGLAYNELIGS----IPSSIFELLNLTEIYL  340 (957)
Q Consensus       274 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L  340 (957)
                      ...    +...+...+.|++|++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            532    223345667888888888877532     233456667777777777766422    2234455666667777


Q ss_pred             CCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCC-----CcChhhh-cCCCCCEEECc
Q 002167          341 SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS-----EFPDNLR-TQHQLELLDLS  414 (957)
Q Consensus       341 ~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~-~~~~L~~L~Ls  414 (957)
                      ++|.+.+.........+                    .....+.|++|++++|.++     .+...+. ++++|++|+++
T Consensus       251 s~n~i~~~g~~~l~~~l--------------------~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAF--------------------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             TTCCCCHHHHHHHHHHH--------------------HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             hcCccCchhhHHHHHHh--------------------hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence            66665532111100000                    0001234555555555443     2334443 56788888888


Q ss_pred             CCcCCCC
Q 002167          415 ENQIGGR  421 (957)
Q Consensus       415 ~n~l~~~  421 (957)
                      +|.+...
T Consensus       311 ~N~~~~~  317 (344)
T d2ca6a1         311 GNRFSEE  317 (344)
T ss_dssp             TSBSCTT
T ss_pred             CCcCCCc
Confidence            8887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=1.4e-12  Score=128.02  Aligned_cols=108  Identities=21%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167          135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL  214 (957)
Q Consensus       135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L  214 (957)
                      ..+++|++|+|++|+++ .++ .+.. +++|++|+|++|.++ .+|..+..+++|++|++++|.++ .++ .+. .+++|
T Consensus        45 ~~L~~L~~L~Ls~n~I~-~i~-~l~~-l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-~l~~L  117 (198)
T d1m9la_          45 STLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLVNL  117 (198)
T ss_dssp             HHTTTCCEEECSEEEES-CCC-CHHH-HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHH-HHHHS
T ss_pred             hcccccceeECcccCCC-Ccc-cccC-CccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccc-ccccc
Confidence            55666666666666665 443 3444 566666666666554 23333333445666666666554 222 233 45556


Q ss_pred             cEEEccCCCCCCCCC-cccCCCCcccEEeccCCCCc
Q 002167          215 AYLDLSSNSFSGHIP-SSFSNLQQLCYLDLDDNHFV  249 (957)
Q Consensus       215 ~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  249 (957)
                      ++|++++|+++.... ..++.+++|++|++++|.+.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccc
Confidence            666666665553211 23555556666666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.9e-12  Score=125.77  Aligned_cols=112  Identities=27%  Similarity=0.223  Sum_probs=56.5

Q ss_pred             chhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccC
Q 002167          204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSN  283 (957)
Q Consensus       204 p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~  283 (957)
                      +.++. .+++|++|+|++|.++.. + .+.++++|++|++++|+++ .+|..... +++|++|++++|.++..  ..+..
T Consensus        41 ~~sl~-~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          41 DATLS-TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             HHHHH-HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhHHh-cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccc-ccccccccccccccccc--ccccc
Confidence            34444 455555555555555422 2 3455555555555555554 44433222 44566666666655532  23555


Q ss_pred             cCCCcEEEeccCcCcccCC-ccccccCcCceeeccCCcCC
Q 002167          284 LQQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELI  322 (957)
Q Consensus       284 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  322 (957)
                      +++|++|++++|+++.... ..+..+++|+.|++++|.+.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            5556666666655543211 23455555666666555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-09  Score=102.05  Aligned_cols=104  Identities=16%  Similarity=0.082  Sum_probs=52.4

Q ss_pred             cEEECCCCccCccCchhhhhcCCCCCEEEccCCc-CCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEc
Q 002167          141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS-FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL  219 (957)
Q Consensus       141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~L  219 (957)
                      +.++++++.+. .+|..+.. +++|++|++++|+ ++...+.+|.++++|++|++++|+++ .++...+..+++|++|+|
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~-l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred             CeEEecCCCCc-cCcccccC-ccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccccceec
Confidence            34555555544 44544444 5555555554442 44444445555555666666555555 333332335555555666


Q ss_pred             cCCCCCCCCCcccCCCCcccEEeccCCCC
Q 002167          220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHF  248 (957)
Q Consensus       220 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  248 (957)
                      ++|+++...+..+.. .+|++|+|++|.+
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcc
Confidence            555555333333332 2466666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.5e-10  Score=103.50  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             CCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEE
Q 002167          163 TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL  241 (957)
Q Consensus       163 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  241 (957)
                      ...+.++.+++.+. ..|..+..+++|++|++++|+ ++ .++...+.++++|+.|++++|+++...|.+|..+++|++|
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            34456777776665 345567777777777776654 44 5554444467777777777777776666667777777777


Q ss_pred             eccCCCCccccchhHhhhccCCcEEECcCCcCC
Q 002167          242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS  274 (957)
Q Consensus       242 ~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~  274 (957)
                      +|++|+++ .+|..++. ..+|+.|+|++|.+.
T Consensus        86 ~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            77777776 66666555 345667777666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.4e-07  Score=86.69  Aligned_cols=64  Identities=27%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             CCCCCEEEccCCcCCCC--cchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC
Q 002167          162 ITQLAYLDLSINSFIGH--IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG  226 (957)
Q Consensus       162 l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~  226 (957)
                      +++|++|+|++|+++..  ++..+..+++|++|++++|.++ .++....-...+|+.|++++|.+..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            66666666666666543  2334455666666666666665 2332111133445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.1e-06  Score=82.14  Aligned_cols=82  Identities=28%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             hhcccceEEEcccCccCcc--CcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCccc-------
Q 002167          755 RILTTFATIDLSSNRFQRK--IPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQ-------  825 (957)
Q Consensus       755 ~~l~~L~~L~Ls~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~-------  825 (957)
                      ..++.|+.|||++|+++..  ++..+..+++|+.|||++|+++...+-.......|+.|++++|+++......       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            3466777777777777754  2345666777777777777777644433334456777777777776654422       


Q ss_pred             CcCCCCCCeEE
Q 002167          826 LASLNYLSVLN  836 (957)
Q Consensus       826 l~~l~~L~~L~  836 (957)
                      +..+++|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45567777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=8.3e-05  Score=69.17  Aligned_cols=12  Identities=17%  Similarity=0.061  Sum_probs=6.1

Q ss_pred             ccCCcEEECcCC
Q 002167          260 ITQLAYLDLSSN  271 (957)
Q Consensus       260 l~~L~~L~Ls~n  271 (957)
                      .+.|+.|+++.+
T Consensus       130 n~sL~~l~l~~~  141 (167)
T d1pgva_         130 NESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCCC
T ss_pred             CCCccEeeCcCC
Confidence            345555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.21  E-value=0.00012  Score=68.16  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             cCCCCcccEEeccCCCCccccc----hhHhhhccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCc
Q 002167          232 FSNLQQLCYLDLDDNHFVGEIP----ASLGNNITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNN  296 (957)
Q Consensus       232 l~~l~~L~~L~Ls~n~l~~~ip----~~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~  296 (957)
                      +...++|++|++++|.+.....    ..+.. .+.|++|++++|.++..    +...+...++|++|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhh-cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3344455555555555442211    11222 44555555555555432    11223344455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.43  E-value=0.0012  Score=61.03  Aligned_cols=13  Identities=23%  Similarity=0.378  Sum_probs=6.8

Q ss_pred             cCCCCCcEEECCC
Q 002167          135 DQFPSLTLLDLCS  147 (957)
Q Consensus       135 ~~l~~L~~L~Ls~  147 (957)
                      .+.+.|++|+|++
T Consensus        14 ~~~~~L~~L~L~~   26 (166)
T d1io0a_          14 NNDPDLEEVNLNN   26 (166)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hcCCCCcEEEcCC
Confidence            3445555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.20  E-value=0.00098  Score=61.55  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=34.0

Q ss_pred             hCCCCCcEEEccC-CCCCCC----CCcccCCCCcccEEeccCCCCccccchhHhh---hccCCcEEECcCCcCC
Q 002167          209 NNITQLAYLDLSS-NSFSGH----IPSSFSNLQQLCYLDLDDNHFVGEIPASLGN---NITQLAYLDLSSNGFS  274 (957)
Q Consensus       209 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~---~l~~L~~L~Ls~n~l~  274 (957)
                      .+.++|++|++++ +.++..    +-..+...++|++|++++|.+....-..+..   ..+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3567777777776 344422    1223445666777777776665332222211   1345555555555544