Citrus Sinensis ID: 002175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950------
Protein Sequence
MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccccccccccccccccEEcccccccccEEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEcHHHHHHcccccccccEEEEccccccccccHHEcccHHHHHHHHHHcccccEEEEccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHcccEcccHHHHHHcccccccccccccccccccccEEcccccccEEEEccHHHHcHHHHHHHHHccccccccccccccccHHHcHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccHEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHccccccccccHcEccccccccccccccHHHHHHHHHHcHccHHccEEEEccc
Coil and Loop (DISEMBL)
megsshdrglYARCFEELfdlsnsdttatARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQsrgndvskfnVSHLIIMIHIYYNNLITGENLYSKLSLVDlagsegliaeddsgerITDVLHVMKSLSALGDVLSsltsrkdivpyeNSMLTKVLADSLGESSKTLMIVnicpnaanMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSdlksenymlaDKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRnealhssevrstirsepmpavssvlrttgdgmdssAVSKKLEEELKKRDALIERLHEENEKLFDRLTEkassvsspqlssplskgsvnvqprdmarndnnnkglpvdvaplplsadkteGTVALVKSSsekikttpaGEYLTAAlndfnpeqydnlaVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLarspelqsimvspvecfleksntgrsrsssrgssparspvhyvdEKIQGfkinlkpekkskLSSVVLRMrgidqdtwrhqvtggKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFlsvtgddasggttgQLELLSTAIMDGwmaglggavppstDALGQLLSEYAKRVYNSQLQHLKDIAGtlatedaedASQVSKLRSALESVDHRRRKVLQQMRSDVALLTleeggspirnpstaaEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERmpslldidhpcaQRQIADARRMVEVLQQMRSDVALLTleeggspiqnpstaAEDARLASLISLDGILNQVKVFTSL
Flexible Loop (DISEMBL)
MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSltsrkdivpyeNSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTvlslgnrdtikkwRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSiesqrnealhssevrstirsepmpavssvlrttgdgmdssaVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsvnvQPRDMArndnnnkglpvdVAPLPLSADKTEGTVALVksssekikttpAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKmeptrvmdtmlVSRVRILYIRSLLarspelqsimvSPVECFLEKsntgrsrsssrgssparspvhyvDEKIqgfkinlkpekksklSSVVLRmrgidqdtwrhqvtggkLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVtgddasggTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLrsalesvdhrrRKVLQQMRSDVALltleeggspirnpSTAAEDARLASLISLDGILNQVKDAvrqssvntlsrskkkaMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLIsldgilnqvkvftsl
Low Complexity Region (SEG)
MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNqvaqllqleqeqkmqiqqRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTgrsrsssrgssparspVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
Disordered region (IsUnstruct)
********GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAA******************VLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK***YM***********************************************************************************************************************************************************************************************GEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL************************VDEKIQGFKIN**********SVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGT*************************************************************ASLISLDGILNQV**********************************LDIDHPCAQRQIADARRMVEVLQQMRSDVALLT*******************LASLISLDGILNQVKVF***
Disordered Region (DISOPRED)
****SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL******************IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI**ENLYSKLSLVDLAGSEGLIA***SGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDL************************************************************************************************************************************************************************************************************************************************TAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGA***********DAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLL***********S********************************EKIQGFKIN**********SVVLRMRGIDQ**W****************KSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSK*RSA**S**HRRRKVLQQMRSDVALLT******************RLASLISLDGILNQVKD******************LTSLDELAERMPSLLDIDHPCAQRQIADARRMV**********************************ASLISLDGILNQVKVFTSL
Disordered Region (DISEMBL)
********GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE*********STIKTLQAKINSIESQ******************MPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR**********************NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLE********************VHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLA***********KLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
Disordered Region (DISPRO)
******DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG******************HVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH*****************************SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK**************************************************GTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK*****************SPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQ************************AEDARLASLISLDGILNQVKVFTSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQQRDSTxxxxxxxxxxxxxxxxxxxxxSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVxxxxxxxxxxxxxxxxxxxxxxxxLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	956	2.2.26 [Sep-21-2011]
Q9LX99	1273	Geminivirus Rep-interacti	yes	no	0.944	0.709	0.726	0.0
O35231	824	Kinesin-like protein KIFC	yes	no	0.246	0.286	0.357	2e-30
O81635	987	Kinesin-4 OS=Arabidopsis	no	no	0.242	0.235	0.340	3e-30
Q9BVG8	833	Kinesin-like protein KIFC	yes	no	0.246	0.283	0.353	9e-29
P46875	754	Kinesin-3 OS=Arabidopsis	no	no	0.241	0.306	0.323	2e-25
P46864	745	Kinesin-2 OS=Arabidopsis	no	no	0.239	0.307	0.322	2e-25
F4JGP4	790	Kinesin-5 OS=Arabidopsis	no	no	0.242	0.293	0.325	5e-25
P45962	598	Kinesin-like protein klp-	yes	no	0.229	0.366	0.315	8e-25
Q07970	793	Kinesin-1 OS=Arabidopsis	no	no	0.240	0.290	0.314	4e-24
P28739	770	Kinesin-like protein klpA	yes	no	0.239	0.297	0.334	1e-23

>sp|Q9LX99|GRIMP_ARATH Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/908 (72%), Positives = 779/908 (85%), Gaps = 5/908 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGS+HDRGLYARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L  I
Sbjct: 233  MEGSNHDRGLYARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPNI 292

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             +   ES IEL QEKVDNPLEF  VLKSAF +RGN  SKFNV+HLI+ IHIYY+N ITGE
Sbjct: 293  NMDLHESVIELGQEKVDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIYYSNTITGE 352

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N+YSKLSLVDLAGSEGLI E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD +PY+NS+
Sbjct: 353  NIYSKLSLVDLAGSEGLIMENDSGDHVTDLLHVMNSISALGDVLSSLTSGKDSIPYDNSI 412

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LT+VLADSLG SSKTLMIVNICP+   +SET+S LN+++RAR+TV SLGNRDTIKKWRD+
Sbjct: 413  LTRVLADSLGGSSKTLMIVNICPSVQTLSETISCLNYAARARNTVPSLGNRDTIKKWRDV 472

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            A+DARKEL E+E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSE
Sbjct: 473  ASDARKELLEKERENQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSFTLQSDLKSE 532

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N ML DKH++EKEQN+QLRNQ+AQ LQL+QEQK+Q+QQ+DS I+ LQAKI  +ESQ +EA
Sbjct: 533  NIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQAKITDLESQVSEA 592

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + S   R+    +     S + +      DSS+V+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 593  VRSDTTRTGDALQSQDIFSPIPKAVEGTTDSSSVTKKLEEELKKRDALIERLHEENEKLF 652

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLTE++ +VS+ Q+ SP  + S N+QP     N N  +G   +   LP + +K  G + 
Sbjct: 653  DRLTERSMAVST-QVLSPSLRASPNIQPA----NVNRGEGYSAEAVALPSTPNKNNGAIT 707

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVKS ++ +KTTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREH
Sbjct: 708  LVKSGTDLVKTTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREH 767

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVECFLEK
Sbjct: 768  EILAEIRDSVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVECFLEK 827

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
             NTGRS+S+SRGSSP RSPV Y+D +I GFK+N+K E+++KL+SVV RMRG++QD  R Q
Sbjct: 828  PNTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRMRGLEQDAGRQQ 887

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTG KLRE+Q+EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG
Sbjct: 888  VTGVKLREMQDEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTSDDVSGG 947

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
              GQLELLSTAIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E
Sbjct: 948  NGGQLELLSTAIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAE 1007

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA QVSKLRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASL
Sbjct: 1008 EAEDAGQVSKLRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASL 1067

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLDGIL QVK+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A 
Sbjct: 1068 ISLDGILKQVKEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAH 1127

Query: 901  RMVEVLQQ 908
            ++VE + +
Sbjct: 1128 QLVETIPE 1135

Acts as a mitotic kinesin, but its function is not restricted to mitosis.
Arabidopsis thaliana (taxid: 3702)

>sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 10/246 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           MEG+  + G+  R  + LF     +  +  ++N  V+  E+YNE LR+LL +      +I
Sbjct: 536 MEGTPENPGINQRALQLLFS-EVQEKASDWQYNITVSAAEIYNEVLRDLLGKEPQEKLEI 594

Query: 61  RLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIY 112
           RL    S       L + +V +  + +KV +  + +R  + +  N     SH ++++ + 
Sbjct: 595 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVR 654

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             +  TG     KL+LVDLAGSE +      G R+ +  H+ +SLSALGDV+++L SR+ 
Sbjct: 655 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQG 714

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
            VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G+R 
Sbjct: 715 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLRFAERVRSVELGPGSRR 774

Query: 233 T-IKKW 237
           T +  W
Sbjct: 775 TELGSW 780

Minus-end microtubule-dependent motor protein. Involved in apically targeted transport. Required for zonula adherens maintenance.

Mus musculus (taxid: 10090)

>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 150/279 (53%), Gaps = 47/279 (16%)

Query: 9   GLYARCFEELFDLSN--SDTTATARFNFAVTVFELYNEQLRELLPQTG------------ 54
           G+  R   +LF LSN   DTT+   +  +V + E+YNEQ+R+LL Q G            
Sbjct: 500 GVNYRALADLFLLSNQRKDTTS---YEISVQMLEIYNEQVRDLLAQDGQTKRLEIRNNSH 556

Query: 55  NGL--AKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIY 112
           NG+   +  L  + S+ +++Q      ++   + ++   +  ND S  + SH  + +H+ 
Sbjct: 557 NGINVPEASLVPVSSTDDVIQL-----MDLGHMNRAVSSTAMNDRS--SRSHSCVTVHVQ 609

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             +L +G  L+  + LVDLAGSE +   + +G+R+ +  H+ KSLSALGDV+SSL+ +  
Sbjct: 610 GRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTS 669

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG--N 230
            VPY NS LT++L DSLG S+KTLM V+I P    + ET+S+L F+ R  S  L     N
Sbjct: 670 HVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVN 729

Query: 231 RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 269
           +D                     E+++LK++I  L+ AL
Sbjct: 730 KDN-------------------SEVKELKEQIANLKMAL 749

Microtubule-binding motor protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4

 Score =  129 bits (325), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 10/246 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           MEG++ + G+  R  + LF     +  +   +   V+  E+YNE LR+LL +      +I
Sbjct: 538 MEGTAENPGINQRALQLLFS-EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 596

Query: 61  RLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIY 112
           RL    S       L + +V +  + +KV +    +R  + +  N     SH ++++ + 
Sbjct: 597 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 656

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             +  TG     KL+LVDLAGSE +      G R+ +  H+ KSLSALGDV+++L SR+ 
Sbjct: 657 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 716

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG-NR 231
            VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G  R
Sbjct: 717 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRR 776

Query: 232 DTIKKW 237
             +  W
Sbjct: 777 AELGSW 782

Minus-end microtubule-dependent motor protein. Involved in apically targeted transport (By similarity). Required for zonula adherens maintenance.

Homo sapiens (taxid: 9606)

>sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 16/247 (6%)

Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP------QTGNG 56
           G+  ++GL  RC E++F+   S  +   ++   V++ E+YNE +R+LL       +T +G
Sbjct: 496 GNVEEKGLIPRCLEQIFETRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVRTDSG 555

Query: 57  LA--KIRLQSLESSIELVQE----KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLI 106
           ++  K  ++   S    V E     V +  E S +L  A ++R    ++ N     SH +
Sbjct: 556 VSPQKHAIKHDASGNTHVAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSRSHFV 615

Query: 107 IMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
             + I   N  T + +   L+L+DLAGSE L     +G+R+ +   + KSLS+LGDV+ +
Sbjct: 616 FTLRISGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFA 675

Query: 167 LTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           L  ++D VP+ NS LT +L   LG  +KTLM VNI P +++  E+L SL F++R  +  +
Sbjct: 676 LAKKEDHVPFRNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEI 735

Query: 227 SLGNRDT 233
               R T
Sbjct: 736 GTPRRQT 742

Possible role in mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 16/245 (6%)

Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP------QTGNG 56
           G+  ++GL  RC E++F    S  +   ++   V++ E+YNE +R+LL       +  NG
Sbjct: 487 GNPDEKGLIPRCLEQIFQTRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVRADNG 546

Query: 57  LA--KIRLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLI 106
           ++  K  ++   S     +EL    V +  + S +L  A ++R    +  N     SH +
Sbjct: 547 VSPQKYAIKHDASGNTHVVELTVVDVRSSKQVSFLLDHAARNRSVGKTAMNEQSSRSHFV 606

Query: 107 IMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
             + I   N  T + +   L+L+DLAGSE L     +G+R+ +   + KSLS+LGDV+ +
Sbjct: 607 FTLKISGFNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFA 666

Query: 167 LTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           L  ++D VP+ NS LT +L   LG  SKTLM VNI P  ++  E+L SL F++R  +  +
Sbjct: 667 LAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACEI 726

Query: 227 SLGNR 231
              +R
Sbjct: 727 GTAHR 731

Possible role in mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 20/252 (7%)

Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSLE 66
           +GL  R  E++F  S S +T   ++   V++ E+YNE +R+LL  +    +  +R  S  
Sbjct: 533 KGLIPRSLEQIFKTSQSLSTQGWKYKMQVSMLEIYNESIRDLLSTSRTIAIESVRADSST 592

Query: 67  SS---------------IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
           S                 +L    V +  + S +L+ A QSR    +  N     SH + 
Sbjct: 593 SGRQYTITHDVNGNTHVSDLTIVDVCSIGQISSLLQQAAQSRSVGKTHMNEQSSRSHFVF 652

Query: 108 MIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSL 167
            + I   N  T + +   L+L+DLAGSE L     +G+R+ +   + KSLSAL DV+ +L
Sbjct: 653 TLRISGVNESTEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSALSDVIFAL 712

Query: 168 TSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
             ++D VP+ NS LT +L   LG  SKTLM VNI P+ ++  E+L SL F++R  +  + 
Sbjct: 713 AKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSTGESLCSLRFAARVNACEIG 772

Query: 228 LGNRDTIKKWRD 239
           +  R T  K  D
Sbjct: 773 IPRRQTSAKLLD 784

Kinesin that supports microtubule movement in an ATP-dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein. During mitosis, is involved in early spindle assembly. Participates in the capture of antiparallel interpolar microtubules and helps in generating force to coalign microtubules.

Arabidopsis thaliana (taxid: 3702)

>sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 133/225 (59%), Gaps = 6/225 (2%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R   +LF+ +  + T   +++  V + E+YNE++R+LL  +   LA  
Sbjct: 338 MDGPVTMPGINQRAIMQLFETA-KERTGDIKYDIKVAMMEIYNEKIRDLLNTSNTNLAIR 396

Query: 61  RLQSLESSIELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNN 115
           + +   SSI  ++E  V++  E ++ L    +++    ++ N+    SH+I+ + +   N
Sbjct: 397 QTEEGRSSIPGLEEVSVNSAEEVTETLARGRKNKAVAATEANIESSRSHVIVRVLVSATN 456

Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVP 175
           LIT      +L+LVDLAGSE +   + +G+ + +   + KSLS LG+V+ +L   +  +P
Sbjct: 457 LITKATTVGRLNLVDLAGSERVSQTNATGQLLKEAQAINKSLSELGNVVLALRQNQKHIP 516

Query: 176 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           + N  LT++L DSL   SKTL+IV++ P+A +++E++SS+NF+ +
Sbjct: 517 FRNCQLTRILEDSLNGDSKTLVIVHLSPDAKSLNESISSVNFAEK 561

Caenorhabditis elegans (taxid: 6239)

>sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 126/254 (49%), Gaps = 24/254 (9%)

Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           +GL  R  E++F  S S      ++   V++ E+YNE +R+LL  + N    + L   +S
Sbjct: 536 KGLIPRSLEQIFQASQSLGAQGWKYKMQVSMLEIYNETIRDLL--STNRTTSMDLVRADS 593

Query: 68  SIELVQEKVDNPL------------------EFSKVLKSAFQSRGNDVSKFNV----SHL 105
                Q  + + +                  + S +L+ A QSR    ++ N     SH 
Sbjct: 594 GTSGKQYTITHDVNGHTHVSDLTIFDVCSVGKISSLLQQAAQSRSVGKTQMNEQSSRSHF 653

Query: 106 IIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
           +  + I   N  T + +   L+L+DLAGSE L     +G+R+ +   + KSLSAL DV+ 
Sbjct: 654 VFTMRISGVNESTEQQVQGVLNLIDLAGSERLSKSGATGDRLKETQAINKSLSALSDVIF 713

Query: 166 SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
           +L  ++D VP+ NS LT +L   LG  SKTLM VNI P+  +  E+L SL F++R  +  
Sbjct: 714 ALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACE 773

Query: 226 LSLGNRDTIKKWRD 239
           + +  R T  K  D
Sbjct: 774 IGIPRRQTSTKLLD 787

Kinesin that supports microtubule movement in an ATP-dependent manner and has a minus-end directed polarity. Plays a crucial role in spindle morphogenesis in male Arabidopsis meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 16/245 (6%)

Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL------ 62
           G+  R   ++++ + S      R+       E+YNE L +LL +    L K +L      
Sbjct: 529 GMIPRAVHQIYETATSLEEKGWRYTMEGNFVEVYNENLNDLLGK-AEELDKKKLEIRHDM 587

Query: 63  QSLESSI-ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLI 117
           Q  +++I +    ++++P     +LK A  +R    +K N     SH I ++ +   N I
Sbjct: 588 QRGKTTITDATTVQLESPEMVESLLKRAAANRSVAATKANERSSRSHSIFILKLIGENYI 647

Query: 118 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSL-TSRKD-IVP 175
           TGE     L+LVDLAGSE L     +G+R+ +  ++ +SLS LGDV+++L   +KD  +P
Sbjct: 648 TGERSEGTLNLVDLAGSERLSHSGATGDRLKETQNINRSLSCLGDVIAALGQGKKDGHIP 707

Query: 176 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIK 235
           Y NS LT +L  SLG +SKTLM V + P  A++SETL+SL F+++  +T +    + T  
Sbjct: 708 YRNSKLTYLLQFSLGGNSKTLMFVMVSPLQAHLSETLTSLKFATKVHNTHIGTAKKQT-- 765

Query: 236 KWRDI 240
           + RD+
Sbjct: 766 RVRDV 770

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	956
356526755	1282	PREDICTED: geminivirus Rep-interacting m	0.939	0.700	0.780	0.0
449496402	1276	PREDICTED: LOW QUALITY PROTEIN: geminivi	0.930	0.697	0.778	0.0
449451393	1276	PREDICTED: geminivirus Rep-interacting m	0.930	0.697	0.778	0.0
356567769	1283	PREDICTED: geminivirus Rep-interacting m	0.939	0.699	0.777	0.0
356497704	1280	PREDICTED: geminivirus Rep-interacting m	0.945	0.706	0.771	0.0
356501588	1272	PREDICTED: geminivirus Rep-interacting m	0.939	0.705	0.776	0.0
297811153	1273	hypothetical protein ARALYDRAFT_487877 [	0.945	0.710	0.733	0.0
15238169	1273	geminivirus Rep-interacting motor protei	0.944	0.709	0.726	0.0
145334367	1274	geminivirus Rep-interacting motor protei	0.945	0.709	0.724	0.0
72255627	1257	117M18_26 [Brassica rapa]	0.945	0.719	0.716	0.0

>gi|356526755|ref|XP_003531982.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]

 Score = 1411 bits (3652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/904 (78%), Positives = 806/904 (89%), Gaps = 6/904 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSS+DRGLYARCFEELFDL+N DTT+T+R+ F VTV ELYNEQ R+LL + G    K+
Sbjct: 234  MEGSSYDRGLYARCFEELFDLANLDTTSTSRYKFCVTVCELYNEQTRDLLLEAGKSTPKL 293

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             L S E  +ELVQE +D+PLEFS VLKSA Q+R ND+SK N+SHLI+ IHI+YNNLITGE
Sbjct: 294  CLGSPECFVELVQENIDSPLEFSAVLKSALQTRENDLSKNNISHLIVTIHIFYNNLITGE 353

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSEGLI EDDSG+R+TD+LHVMKSLSALGDVLSSLTS+KDI+PYENS+
Sbjct: 354  NSYSKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSL 413

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+LADSLG SSKTLMIVN+CP+ +N+SETLSS+NFS+RAR++ LSLGN+DTIKKWRD+
Sbjct: 414  LTKLLADSLGGSSKTLMIVNVCPSISNLSETLSSVNFSARARNSTLSLGNQDTIKKWRDV 473

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKELYE+EKEI DLKQE L L+QALK+ANDQC+LL+NEVQKA KVS  LQ+DLKSE
Sbjct: 474  ANDARKELYEKEKEIHDLKQEGLELKQALKDANDQCILLFNEVQKARKVSSVLQTDLKSE 533

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            + +L+DKH IEKEQN QLRNQVAQLL+LEQ+QK+QIQ++DSTI++LQAKI ++E+Q NEA
Sbjct: 534  HVLLSDKHNIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQLNEA 593

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + SSE RST  SEP  A  S  R TGDG+DSSAV+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 594  IKSSESRSTFVSEPEFADQSNSRPTGDGIDSSAVTKKLEEELKKRDALIERLHEENEKLF 653

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLT+KAS+  SP+LSSPL+ GS NVQPRD+  + +      +DV P PL+ DK +GTVA
Sbjct: 654  DRLTQKASTAGSPKLSSPLAHGSANVQPRDIGSSRS------MDVLPSPLATDKNDGTVA 707

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVK+ SE +KTTPAGEYLTAALNDF+P+QY+  A ISDGANKLLMLVLAAVIKAGASREH
Sbjct: 708  LVKTGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREH 767

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FIRKMEP +VMDTMLVSRVRILYIRSLLARSPELQSI V PVECFLEK
Sbjct: 768  EILAEIRDSVFSFIRKMEPKQVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEK 827

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
            +NTGRSRSSSRGSSP RSPV YVDE+IQGFK+NLKPEKKSK SSVVL++RGID+D WR Q
Sbjct: 828  TNTGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQ 887

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTGGKLREI EEAKSFA GN+ALAALFVHTPAGELQRQIRSWLAE+FEFLS+TG+DASGG
Sbjct: 888  VTGGKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAESFEFLSLTGEDASGG 947

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
            +TGQLELLSTAIMDGWMAGLG A+PP TDALGQLL EY+KRVY SQLQHLKDIAGTLATE
Sbjct: 948  STGQLELLSTAIMDGWMAGLGAALPPHTDALGQLLFEYSKRVYTSQLQHLKDIAGTLATE 1007

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA+QV+KLRSALESVDH+RRK+LQQM+SD+ALLTLE GG PI+NPSTAAEDARLASL
Sbjct: 1008 EAEDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGFPIQNPSTAAEDARLASL 1067

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLD IL Q+KD  R SSVN L++SKKK ML SL+EL E+MPSLL+IDHPCAQR IADAR
Sbjct: 1068 ISLDSILKQIKDMTRLSSVNILTKSKKKTMLASLNELTEQMPSLLEIDHPCAQRHIADAR 1127

Query: 901  RMVE 904
             MVE
Sbjct: 1128 YMVE 1131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496402|ref|XP_004160125.1| PREDICTED: LOW QUALITY PROTEIN: geminivirus Rep-interacting motor protein-like [Cucumis sativus]

 Score = 1407 bits (3641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/906 (77%), Positives = 801/906 (88%), Gaps = 16/906 (1%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSSHDRGLYARCFEELFDL+NSD+T+T+RF F VTV ELYNEQ+R+LL ++    +  
Sbjct: 234  MEGSSHDRGLYARCFEELFDLANSDSTSTSRFKFFVTVCELYNEQIRDLLAESVIA-SNP 292

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             + S E    LVQEKVDNPL+FS++LK+AF +RGND+SK NVSHLI  IH+YY NLIT E
Sbjct: 293  HVDSPELFAGLVQEKVDNPLDFSRILKAAFNARGNDLSKLNVSHLITTIHVYYTNLITSE 352

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSEG I EDDSGER+TD+LHVMKSLSALGDVLSSLTS+K++VPYENS+
Sbjct: 353  NTYSKLSLVDLAGSEGSITEDDSGERVTDLLHVMKSLSALGDVLSSLTSKKEVVPYENSV 412

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+LADS+GE+SKTLMIV++CPNA+N+SETLSSLNFS+RAR+ VLSLGNRDTIKKWRDI
Sbjct: 413  LTKLLADSIGENSKTLMIVHLCPNASNLSETLSSLNFSARARNAVLSLGNRDTIKKWRDI 472

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKELY++EKE+QDLK+E+L L+ ALK+ANDQCVLL+NEVQKAWKVS TLQSDLK E
Sbjct: 473  ANDARKELYDKEKEVQDLKREVLELKNALKDANDQCVLLFNEVQKAWKVSSTLQSDLKME 532

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N  LA+K K EKEQNAQL+NQVAQLL LEQEQK+QIQQRDSTI+TLQ+KI SIESQ NE 
Sbjct: 533  NISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKIKSIESQVNE- 591

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
                 VRS++ +EP  A       TGD MDSSAVSKKLEEELKKRDALIERLHEENEKLF
Sbjct: 592  -----VRSSLSTEPSKA-------TGDSMDSSAVSKKLEEELKKRDALIERLHEENEKLF 639

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNK--GLPVDVAPLPLSADKTEGT 478
            DRLTEKAS V SPQL S L +GS NVQP+D  RND N+K  G  + + P P + DK EG 
Sbjct: 640  DRLTEKASLVGSPQLPSTLPQGSGNVQPQDPGRNDTNDKSKGSSMAIVPSPSAVDKAEGN 699

Query: 479  VALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASR 538
            +ALVKS S+K+KTTPAGEYLT+ALNDF+PEQYD+ A ISDGANKLLMLVLAAVIKAGASR
Sbjct: 700  LALVKSGSDKVKTTPAGEYLTSALNDFDPEQYDSPAAISDGANKLLMLVLAAVIKAGASR 759

Query: 539  EHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL 598
            EHEILAEIRDAVF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI VSPVECFL
Sbjct: 760  EHEILAEIRDAVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQSIKVSPVECFL 819

Query: 599  EKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWR 658
            EK++TGRSRSSSRG+SP RSPV Y++E+IQGFK+NL+PEKKS+ SSVV ++RG+DQD+ R
Sbjct: 820  EKTSTGRSRSSSRGNSPGRSPVRYMEEQIQGFKVNLRPEKKSRFSSVVSKIRGLDQDSSR 879

Query: 659  HQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDAS 718
             QVT GKLREI E+AKSFA GNKALAALFVHTPAGELQRQIRSWL ENFE+LSVT DDA+
Sbjct: 880  LQVTAGKLREINEDAKSFAVGNKALAALFVHTPAGELQRQIRSWLVENFEYLSVTEDDAA 939

Query: 719  GGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLA 778
            GG TGQLELLSTAIMDGWM GLG A+PPSTDALGQLLSEY KRVY+SQLQHLKDIAGTLA
Sbjct: 940  GGATGQLELLSTAIMDGWMGGLGAAIPPSTDALGQLLSEYTKRVYSSQLQHLKDIAGTLA 999

Query: 779  TEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLA 838
             E+AEDA QV+KLRSALESVDH+RRK+LQQM++D+ALL LE+GGSPI+NPSTA EDARLA
Sbjct: 1000 MEEAEDAPQVTKLRSALESVDHKRRKILQQMKNDIALLMLEDGGSPIQNPSTAVEDARLA 1059

Query: 839  SLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIAD 898
            SLISLDGIL QVKD VRQ+SVN LSRSKKKA+L SLDE  E+MPSLL+IDHPCA+RQIA+
Sbjct: 1060 SLISLDGILKQVKDIVRQASVNALSRSKKKALLASLDEFTEQMPSLLEIDHPCARRQIAE 1119

Query: 899  ARRMVE 904
            AR++VE
Sbjct: 1120 ARQIVE 1125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451393|ref|XP_004143446.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Cucumis sativus]

 Score = 1407 bits (3641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/906 (77%), Positives = 801/906 (88%), Gaps = 16/906 (1%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSSHDRGLYARCFEELFDL+NSD+T+T+RF F VTV ELYNEQ+R+LL ++    +  
Sbjct: 234  MEGSSHDRGLYARCFEELFDLANSDSTSTSRFKFFVTVCELYNEQIRDLLAESVIA-SNP 292

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             + S E    LVQEKVDNPL+FS++LK+AF +RGND+SK NVSHLI  IH+YY NLIT E
Sbjct: 293  HVDSPELFAGLVQEKVDNPLDFSRILKAAFNARGNDLSKLNVSHLITTIHVYYTNLITSE 352

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSEG I EDDSGER+TD+LHVMKSLSALGDVLSSLTS+K++VPYENS+
Sbjct: 353  NTYSKLSLVDLAGSEGSITEDDSGERVTDLLHVMKSLSALGDVLSSLTSKKEVVPYENSV 412

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+LADS+GE+SKTLMIV++CPNA+N+SETLSSLNFS+RAR+ VLSLGNRDTIKKWRDI
Sbjct: 413  LTKLLADSIGENSKTLMIVHLCPNASNLSETLSSLNFSARARNAVLSLGNRDTIKKWRDI 472

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKELY++EKE+QDLK+E+L L+ ALK+ANDQCVLL+NEVQKAWKVS TLQSDLK E
Sbjct: 473  ANDARKELYDKEKEVQDLKREVLELKNALKDANDQCVLLFNEVQKAWKVSSTLQSDLKME 532

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N  LA+K K EKEQNAQL+NQVAQLL LEQEQK+QIQQRDSTI+TLQ+KI SIESQ NE 
Sbjct: 533  NISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKIKSIESQVNE- 591

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
                 VRS++ +EP  A       TGD MDSSAVSKKLEEELKKRDALIERLHEENEKLF
Sbjct: 592  -----VRSSLSTEPSKA-------TGDSMDSSAVSKKLEEELKKRDALIERLHEENEKLF 639

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNK--GLPVDVAPLPLSADKTEGT 478
            DRLTEKAS V SPQL S L +GS NVQP+D  RND N+K  G  + + P P + DK EG 
Sbjct: 640  DRLTEKASLVGSPQLPSTLPQGSGNVQPQDPGRNDTNDKSKGSSMAIVPSPSAVDKAEGN 699

Query: 479  VALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASR 538
            +ALVKS S+K+KTTPAGEYLT+ALNDF+PEQYD+ A ISDGANKLLMLVLAAVIKAGASR
Sbjct: 700  LALVKSGSDKVKTTPAGEYLTSALNDFDPEQYDSPAAISDGANKLLMLVLAAVIKAGASR 759

Query: 539  EHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL 598
            EHEILAEIRDAVF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI VSPVECFL
Sbjct: 760  EHEILAEIRDAVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQSIKVSPVECFL 819

Query: 599  EKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWR 658
            EK++TGRSRSSSRG+SP RSPV Y++E+IQGFK+NL+PEKKS+ SSVV ++RG+DQD+ R
Sbjct: 820  EKTSTGRSRSSSRGNSPGRSPVRYMEEQIQGFKVNLRPEKKSRFSSVVSKIRGLDQDSSR 879

Query: 659  HQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDAS 718
             QVT GKLREI E+AKSFA GNKALAALFVHTPAGELQRQIRSWL ENFE+LSVT DDA+
Sbjct: 880  LQVTAGKLREINEDAKSFAVGNKALAALFVHTPAGELQRQIRSWLVENFEYLSVTEDDAA 939

Query: 719  GGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLA 778
            GG TGQLELLSTAIMDGWM GLG A+PPSTDALGQLLSEY KRVY+SQLQHLKDIAGTLA
Sbjct: 940  GGATGQLELLSTAIMDGWMGGLGAAIPPSTDALGQLLSEYTKRVYSSQLQHLKDIAGTLA 999

Query: 779  TEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLA 838
             E+AEDA QV+KLRSALESVDH+RRK+LQQM++D+ALL LE+GGSPI+NPSTA EDARLA
Sbjct: 1000 MEEAEDAPQVTKLRSALESVDHKRRKILQQMKNDIALLMLEDGGSPIQNPSTAVEDARLA 1059

Query: 839  SLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIAD 898
            SLISLDGIL QVKD VRQ+SVN LSRSKKKA+L SLDE  E+MPSLL+IDHPCA+RQIA+
Sbjct: 1060 SLISLDGILKQVKDIVRQASVNALSRSKKKALLASLDEFTEQMPSLLEIDHPCARRQIAE 1119

Query: 899  ARRMVE 904
            AR++VE
Sbjct: 1120 ARQIVE 1125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567769|ref|XP_003552088.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]

 Score = 1405 bits (3638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/904 (77%), Positives = 803/904 (88%), Gaps = 6/904 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSS+DRGLYARCFEELFDL+N D T+T+R+ F VTV ELYNEQ R+LL + G    K+
Sbjct: 235  MEGSSYDRGLYARCFEELFDLANLDATSTSRYKFCVTVCELYNEQTRDLLLEAGKSAPKL 294

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             L S E  IELVQE VDNPLEFS+VLK++ Q+R ND+S  NVSHLI+ IH++YNNLITGE
Sbjct: 295  CLGSPECFIELVQENVDNPLEFSEVLKTSLQTRENDLSNNNVSHLIVTIHVFYNNLITGE 354

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSEGLI EDDSG+R+TD+LHVMKSLSALGDVLSSLTS+KDI+PYENS+
Sbjct: 355  NSYSKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSL 414

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+LADSLG SSK LMIVN+CP+ +N+SETLSSLNFS+RAR++ LSLGNRDTIKKWRD+
Sbjct: 415  LTKLLADSLGGSSKALMIVNVCPSISNLSETLSSLNFSARARNSTLSLGNRDTIKKWRDV 474

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKEL E+EKEI DLKQE L L+QALK+ANDQC+LL+NEVQKAWKVS  LQ+DLKSE
Sbjct: 475  ANDARKELNEKEKEIHDLKQEGLKLKQALKDANDQCILLFNEVQKAWKVSSVLQTDLKSE 534

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            + +L+DKHKIEKEQN QLRNQVAQLL+LEQ+QK+QIQ++DSTI++LQAKI ++E+Q NEA
Sbjct: 535  HVLLSDKHKIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQFNEA 594

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + SSE RST   E   A  S    TGDG+DSSAV+KKL+EELKKRDALIERLHEENEKLF
Sbjct: 595  IKSSESRSTFVYETESADQSNSGPTGDGIDSSAVTKKLDEELKKRDALIERLHEENEKLF 654

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLT+KAS+  SP+LSSPL++GS NVQPRD+  + +      + V P PL+ DK +GTVA
Sbjct: 655  DRLTQKASTAGSPKLSSPLARGSANVQPRDIGSSRS------MGVLPSPLATDKNDGTVA 708

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVK+ SE +KTTPAGEYLTAALNDF+P+QY+  A ISDGANKLLMLVLAAVIKAGASREH
Sbjct: 709  LVKTGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREH 768

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEI+D+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI V PVECFLEK
Sbjct: 769  EILAEIKDSVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEK 828

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
            +NTGRSRSSSRGSSP RSPV YVDE+IQGFK+NLKPEKKSK SSVVL++RGID+D WR Q
Sbjct: 829  TNTGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQ 888

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTGGKLREI EEAKSFA GN+ALAALFVHTPAGELQRQIRSWLAENFEFLS+TG+DASGG
Sbjct: 889  VTGGKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAENFEFLSLTGEDASGG 948

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
            +TGQLELLSTAIMDGWMAGLG A+PP TDALGQL  EY+KRVY SQLQHLKDIAGTLATE
Sbjct: 949  STGQLELLSTAIMDGWMAGLGAALPPHTDALGQLFFEYSKRVYTSQLQHLKDIAGTLATE 1008

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA+QV+KLRSALESVDH+RRK+LQQM+SD+ALLTLE GGSPI+NPSTAAEDARLASL
Sbjct: 1009 EAEDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGSPIQNPSTAAEDARLASL 1068

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLD IL Q+KD +R SSVN LS+SKKK MLTSL+EL E+MPSLL+IDHPCAQR IADA 
Sbjct: 1069 ISLDSILKQIKDIIRLSSVNILSKSKKKTMLTSLNELTEQMPSLLEIDHPCAQRHIADAH 1128

Query: 901  RMVE 904
             +VE
Sbjct: 1129 YLVE 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497704|ref|XP_003517699.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]

 Score = 1397 bits (3616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/906 (77%), Positives = 792/906 (87%), Gaps = 2/906 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSS+DRGLYARCFEELFDLSNSDTTAT++  F +TVFELYNEQ+R+LL ++G  L K+
Sbjct: 224  MEGSSYDRGLYARCFEELFDLSNSDTTATSQCTFCITVFELYNEQIRDLLLESGKSLPKL 283

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
               S E  IEL+QEKVDNPL+FS+VLK+AFQSRGN+  K NVSHL++ IHI+YNNL+TGE
Sbjct: 284  CFGSPEYFIELMQEKVDNPLDFSRVLKAAFQSRGNNPLKINVSHLVVTIHIFYNNLVTGE 343

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSE LI EDDSGER+TD+LHVMK+LSALGDVLSSLTS+KD +PYENSM
Sbjct: 344  NSYSKLSLVDLAGSECLITEDDSGERVTDMLHVMKTLSALGDVLSSLTSKKDAIPYENSM 403

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+ ADSLG SSKTLMIVN+CPN++N+SETL SLNFS+RAR++VLSLGNRDTIKKWRD+
Sbjct: 404  LTKLFADSLGGSSKTLMIVNVCPNSSNLSETLLSLNFSARARNSVLSLGNRDTIKKWRDV 463

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKELYE+EKEIQ LKQ+ L L+QALK+ANDQC LL+NEVQKAWKVS  LQ+DLKSE
Sbjct: 464  ANDARKELYEKEKEIQYLKQDGLRLKQALKDANDQCALLFNEVQKAWKVSSALQTDLKSE 523

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            + +LAD +K+EKEQNAQLRNQVA +LQLEQEQ + IQQRDSTI++LQAKI S+E Q NEA
Sbjct: 524  HILLADNYKVEKEQNAQLRNQVAHMLQLEQEQNLLIQQRDSTIQSLQAKIGSLEIQLNEA 583

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            L SS   S +  E +    S  RTTGDG DSSAV+KKLEEELKKRDALIERLH ENEKLF
Sbjct: 584  LKSSNTGSNVGPETLSGTLSNPRTTGDGTDSSAVTKKLEEELKKRDALIERLHVENEKLF 643

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNN--KGLPVDVAPLPLSADKTEGT 478
            D+LTEKAS   SPQLSSPLS G+VNVQP++  RN  +   +   +DV P  L  DK +GT
Sbjct: 644  DKLTEKASLAGSPQLSSPLSGGAVNVQPQNRGRNGTSTTARARSLDVLPSSLMTDKNDGT 703

Query: 479  VALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASR 538
            VALVKS SEK+KTTPAGEYLTAALNDFNP+QY+ LA ISDGANKLLMLVLAAVIKAGASR
Sbjct: 704  VALVKSDSEKVKTTPAGEYLTAALNDFNPDQYEGLAAISDGANKLLMLVLAAVIKAGASR 763

Query: 539  EHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL 598
            EHEILAEIRDAVF+FIRKMEP RVMDTMLVSRVRIL+IRSLLARS ELQSI V  VECFL
Sbjct: 764  EHEILAEIRDAVFSFIRKMEPRRVMDTMLVSRVRILHIRSLLARSTELQSIKVLSVECFL 823

Query: 599  EKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWR 658
            EK+N G SRSSSR SSP RS + YVDE+IQGFK++LKPEKKSK SSVVL++RGID++TWR
Sbjct: 824  EKANAGPSRSSSRASSPGRSSMQYVDEQIQGFKVSLKPEKKSKFSSVVLKIRGIDEETWR 883

Query: 659  HQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDAS 718
             QVTGGKLREI EEAK+FA GNKALAALFVHTPAGELQRQIRSWLAE F+FLSV G+DA 
Sbjct: 884  QQVTGGKLREISEEAKNFAIGNKALAALFVHTPAGELQRQIRSWLAEKFDFLSVMGNDAP 943

Query: 719  GGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLA 778
            GGTTGQLEL+STAIMDGWMAGLG A+PP TDALGQLL EY+KRVY SQLQHLKDI GTLA
Sbjct: 944  GGTTGQLELISTAIMDGWMAGLGSALPPQTDALGQLLFEYSKRVYTSQLQHLKDIVGTLA 1003

Query: 779  TEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLA 838
            TE+AEDA+QV+KLRSALESVDH+RRK+LQQMRSDVALLTLE G SP++NPSTAAEDARLA
Sbjct: 1004 TEEAEDAAQVAKLRSALESVDHKRRKILQQMRSDVALLTLENGSSPVQNPSTAAEDARLA 1063

Query: 839  SLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIAD 898
            SL+SLD IL QVKD  R S+VNT+ +SKK  +L SLD+L E+MPSLL+IDHPCAQR IAD
Sbjct: 1064 SLVSLDRILKQVKDITRLSTVNTIQKSKKGTVLGSLDKLTEQMPSLLEIDHPCAQRYIAD 1123

Query: 899  ARRMVE 904
            ARR VE
Sbjct: 1124 ARRKVE 1129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501588|ref|XP_003519606.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max]

 Score = 1377 bits (3565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/904 (77%), Positives = 796/904 (88%), Gaps = 6/904 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGSS+DRGLYARCFEELFDLSNSDTTAT+++ F +TVFELYNEQ+R+LL ++G  L K+
Sbjct: 224  MEGSSYDRGLYARCFEELFDLSNSDTTATSQYTFCITVFELYNEQIRDLLLESGKSLPKL 283

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
               S E  IEL+QEKVDNPL+FS+VLK+AFQ RGN+  K NVSHL++ IHI+YNNLITGE
Sbjct: 284  CFGSPEYFIELMQEKVDNPLDFSRVLKAAFQGRGNNPLKINVSHLVVTIHIFYNNLITGE 343

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N YSKLSLVDLAGSEGLI EDDSGER+TD+LHVMKSLSALGDVLSSLTS+KD++PYENSM
Sbjct: 344  NSYSKLSLVDLAGSEGLITEDDSGERVTDMLHVMKSLSALGDVLSSLTSKKDVIPYENSM 403

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LTK+ ADSLG SSKTLMIVN+CPN++N+SE+L SLNFS+RAR++VLSLGNRDTIKKWRD 
Sbjct: 404  LTKLFADSLGGSSKTLMIVNVCPNSSNLSESLLSLNFSARARNSVLSLGNRDTIKKWRDA 463

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            ANDARKELYE+EKEIQ LKQ+ L L+QALK ANDQCVLL+NEVQKAWKVS  LQ+DLKSE
Sbjct: 464  ANDARKELYEKEKEIQYLKQDDLRLKQALKVANDQCVLLFNEVQKAWKVSSALQTDLKSE 523

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            + +LAD +K+EKEQNAQLRNQVA +LQLEQEQ +QIQQR+STI+ LQAKI S+E Q N+A
Sbjct: 524  HILLADNYKVEKEQNAQLRNQVAHMLQLEQEQNLQIQQRNSTIQNLQAKIGSLEIQLNKA 583

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            L S    S +  E + A  S  RTTG+GMDSSAV+KKLEEELK+RDALIERLH ENEKLF
Sbjct: 584  LGSINTGSNVGPETVSAALSNSRTTGEGMDSSAVTKKLEEELKRRDALIERLHVENEKLF 643

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            D+LTEKAS   SPQ SSPLS+GSVNVQP+++ R         VDV P  L  DK +GTVA
Sbjct: 644  DKLTEKASLAGSPQQSSPLSRGSVNVQPQNIGR------ARSVDVLPSSLMIDKNDGTVA 697

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVKS SEK+KTTPAGEYLTAALNDFNP+QY+ LA ISDGA+KLLMLVLAAVIKAGASREH
Sbjct: 698  LVKSGSEKVKTTPAGEYLTAALNDFNPDQYEGLAAISDGADKLLMLVLAAVIKAGASREH 757

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRDAVF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI V PVECFLEK
Sbjct: 758  EILAEIRDAVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEK 817

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
            +NTG SRSSSR SSP RS + YVDE+IQGFK+NLKPEKKSK SSVVL++RGID++TWR Q
Sbjct: 818  ANTGPSRSSSRASSPGRSSMQYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEETWRQQ 877

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTGGKLREI EEAK+FA GNKALAALFVHTPAGELQRQIR WLAE F+FLSV G+DA GG
Sbjct: 878  VTGGKLREISEEAKNFAIGNKALAALFVHTPAGELQRQIRFWLAEKFDFLSVMGNDAPGG 937

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
            TTGQLEL+STAIMDGWMAGLG A+PP TDALGQLL EY+KRVY SQ+QHLKDI+GTLATE
Sbjct: 938  TTGQLELISTAIMDGWMAGLGSALPPQTDALGQLLFEYSKRVYTSQVQHLKDISGTLATE 997

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA+QV+KLRSALESVDH+RRK+LQQMRSDVALLTLE GG PI+NPSTAAEDARLASL
Sbjct: 998  EAEDAAQVAKLRSALESVDHKRRKILQQMRSDVALLTLENGGLPIQNPSTAAEDARLASL 1057

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLD IL QVKD  R S+VNT+ +SKK+ +L SLD+L E+M SLL+IDHPCA+R IADAR
Sbjct: 1058 ISLDRILKQVKDISRLSTVNTIEKSKKRTVLGSLDKLTEQMSSLLEIDHPCARRYIADAR 1117

Query: 901  RMVE 904
            RMVE
Sbjct: 1118 RMVE 1121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811153|ref|XP_002873460.1| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata] gi|297319297|gb|EFH49719.1| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata]

 Score = 1340 bits (3468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/908 (73%), Positives = 790/908 (87%), Gaps = 4/908 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGS+HDRGLYARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L KI
Sbjct: 232  MEGSNHDRGLYARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPKI 291

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             +   ES IEL QEKVDNPLEF +VLKSAFQ+RGND SKFNV+HLI+ IHIYY+N ITGE
Sbjct: 292  NMDLHESVIELGQEKVDNPLEFLRVLKSAFQNRGNDKSKFNVTHLIVTIHIYYSNTITGE 351

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N+YSKLSLVDLAGSEGL  E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD++PY+NS+
Sbjct: 352  NIYSKLSLVDLAGSEGLTEENDSGDHVTDLLHVMNSISALGDVLSSLTSEKDLIPYDNSV 411

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LT+VLADSLG SSKTLMIVNICP+  N+SET+S LN+++R R+TV SLGNRDTIKKWRD+
Sbjct: 412  LTRVLADSLGGSSKTLMIVNICPSVQNLSETISCLNYAARVRNTVPSLGNRDTIKKWRDV 471

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            A+DARKEL E+E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVS TLQSDLKSE
Sbjct: 472  ASDARKELLEKERETQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSLTLQSDLKSE 531

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N ML DKH++EKEQN++LRNQ+AQ LQL+QEQK+Q+QQ+DSTI+ LQAKI  +ESQ +EA
Sbjct: 532  NIMLVDKHRLEKEQNSRLRNQIAQFLQLDQEQKLQMQQQDSTIQNLQAKITDLESQVSEA 591

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + S   R+    +     SSV +     +DSS+V+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 592  VRSDTTRTGDALQSQDISSSVPKAVEGTIDSSSVTKKLEEELKKRDALIERLHEENEKLF 651

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLTE++ +VS+ Q+ SP S+ S N+QP   A  ++  +G   +   LP +A K  G + 
Sbjct: 652  DRLTERSMAVST-QVLSPSSRASPNIQP---ANANSRGEGFSEEAVALPSTATKNNGAIT 707

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVKS ++ +KTTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREH
Sbjct: 708  LVKSGTDLVKTTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREH 767

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI VSPVECFLEK
Sbjct: 768  EILAEIRDSVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQSIRVSPVECFLEK 827

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
             NTGRS+S+SRGSSP RSPV Y+D +I GFK+N+KPE+++KL+SVV RMRG++QD+ R Q
Sbjct: 828  PNTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKPERRNKLASVVSRMRGLEQDSGRQQ 887

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTG KLRE+Q+EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG
Sbjct: 888  VTGVKLREMQDEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTADDVSGG 947

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
            T GQLELLSTAIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E
Sbjct: 948  TGGQLELLSTAIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAE 1007

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA QV+KLRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASL
Sbjct: 1008 EAEDAGQVAKLRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASL 1067

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLDGIL QVK+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A 
Sbjct: 1068 ISLDGILKQVKEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAH 1127

Query: 901  RMVEVLQQ 908
            ++VE + +
Sbjct: 1128 QLVETIPE 1135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238169|ref|NP_196609.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi|75311662|sp|Q9LX99.1|GRIMP_ARATH RecName: Full=Geminivirus Rep-interacting motor protein; AltName: Full=Geminivirus replication protein-interacting protein gi|7671456|emb|CAB89396.1| putative protein [Arabidopsis thaliana] gi|21428315|gb|AAM49809.1| geminivirus replication protein-interacting protein [Arabidopsis thaliana] gi|332004163|gb|AED91546.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana]

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/908 (72%), Positives = 779/908 (85%), Gaps = 5/908 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGS+HDRGLYARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L  I
Sbjct: 233  MEGSNHDRGLYARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPNI 292

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             +   ES IEL QEKVDNPLEF  VLKSAF +RGN  SKFNV+HLI+ IHIYY+N ITGE
Sbjct: 293  NMDLHESVIELGQEKVDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIYYSNTITGE 352

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N+YSKLSLVDLAGSEGLI E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD +PY+NS+
Sbjct: 353  NIYSKLSLVDLAGSEGLIMENDSGDHVTDLLHVMNSISALGDVLSSLTSGKDSIPYDNSI 412

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LT+VLADSLG SSKTLMIVNICP+   +SET+S LN+++RAR+TV SLGNRDTIKKWRD+
Sbjct: 413  LTRVLADSLGGSSKTLMIVNICPSVQTLSETISCLNYAARARNTVPSLGNRDTIKKWRDV 472

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            A+DARKEL E+E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSE
Sbjct: 473  ASDARKELLEKERENQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSFTLQSDLKSE 532

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N ML DKH++EKEQN+QLRNQ+AQ LQL+QEQK+Q+QQ+DS I+ LQAKI  +ESQ +EA
Sbjct: 533  NIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQAKITDLESQVSEA 592

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + S   R+    +     S + +      DSS+V+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 593  VRSDTTRTGDALQSQDIFSPIPKAVEGTTDSSSVTKKLEEELKKRDALIERLHEENEKLF 652

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLTE++ +VS+ Q+ SP  + S N+QP     N N  +G   +   LP + +K  G + 
Sbjct: 653  DRLTERSMAVST-QVLSPSLRASPNIQPA----NVNRGEGYSAEAVALPSTPNKNNGAIT 707

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVKS ++ +KTTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREH
Sbjct: 708  LVKSGTDLVKTTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREH 767

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVECFLEK
Sbjct: 768  EILAEIRDSVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVECFLEK 827

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
             NTGRS+S+SRGSSP RSPV Y+D +I GFK+N+K E+++KL+SVV RMRG++QD  R Q
Sbjct: 828  PNTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRMRGLEQDAGRQQ 887

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTG KLRE+Q+EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG
Sbjct: 888  VTGVKLREMQDEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTSDDVSGG 947

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
              GQLELLSTAIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E
Sbjct: 948  NGGQLELLSTAIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAE 1007

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA QVSKLRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASL
Sbjct: 1008 EAEDAGQVSKLRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASL 1067

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLDGIL QVK+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A 
Sbjct: 1068 ISLDGILKQVKEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAH 1127

Query: 901  RMVEVLQQ 908
            ++VE + +
Sbjct: 1128 QLVETIPE 1135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334367|ref|NP_001078565.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi|332004164|gb|AED91547.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana]

 Score = 1318 bits (3411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/908 (72%), Positives = 781/908 (86%), Gaps = 4/908 (0%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEGS+HDRGLYARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L  I
Sbjct: 233  MEGSNHDRGLYARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPNI 292

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             +   ES IEL QEKVDNPLEF  VLKSAF +RGN  SKFNV+HLI+ IHIYY+N ITGE
Sbjct: 293  NMDLHESVIELGQEKVDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIYYSNTITGE 352

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N+YSKLSLVDLAGSEGLI E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD +PY+NS+
Sbjct: 353  NIYSKLSLVDLAGSEGLIMENDSGDHVTDLLHVMNSISALGDVLSSLTSGKDSIPYDNSI 412

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LT+VLADSLG SSKTLMIVNICP+   +SET+S LN+++RAR+TV SLGNRDTIKKWRD+
Sbjct: 413  LTRVLADSLGGSSKTLMIVNICPSVQTLSETISCLNYAARARNTVPSLGNRDTIKKWRDV 472

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            A+DARKEL E+E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSE
Sbjct: 473  ASDARKELLEKERENQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSFTLQSDLKSE 532

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N ML DKH++EKEQN+QLRNQ+AQ LQL+QEQK+Q+QQ+DS I+ LQAKI  +ESQ +EA
Sbjct: 533  NIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQAKITDLESQVSEA 592

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
            + S   R+    +     S + +      DSS+V+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 593  VRSDTTRTGDALQSQDIFSPIPKAVEGTTDSSSVTKKLEEELKKRDALIERLHEENEKLF 652

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLTE++ +VS+ Q+ SP  + S N+QP ++   ++  +G   +   LP + +K  G + 
Sbjct: 653  DRLTERSMAVST-QVLSPSLRASPNIQPANV---NSRGEGYSAEAVALPSTPNKNNGAIT 708

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            LVKS ++ +KTTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREH
Sbjct: 709  LVKSGTDLVKTTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREH 768

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVECFLEK
Sbjct: 769  EILAEIRDSVFSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVECFLEK 828

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
             NTGRS+S+SRGSSP RSPV Y+D +I GFK+N+K E+++KL+SVV RMRG++QD  R Q
Sbjct: 829  PNTGRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRMRGLEQDAGRQQ 888

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTG KLRE+Q+EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG
Sbjct: 889  VTGVKLREMQDEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTSDDVSGG 948

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
              GQLELLSTAIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E
Sbjct: 949  NGGQLELLSTAIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAE 1008

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA QVSKLRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASL
Sbjct: 1009 EAEDAGQVSKLRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASL 1068

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLDGIL QVK+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A 
Sbjct: 1069 ISLDGILKQVKEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAH 1128

Query: 901  RMVEVLQQ 908
            ++VE + +
Sbjct: 1129 QLVETIPE 1136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72255627|gb|AAZ66945.1| 117M18_26 [Brassica rapa]

 Score = 1318 bits (3410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/924 (71%), Positives = 786/924 (85%), Gaps = 20/924 (2%)

Query: 1    MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
            MEG SHDRGLYARCFEELFDL+NSD T+T+RF+F+V+VFE+YNEQ+R+LL +T + L KI
Sbjct: 228  MEGLSHDRGLYARCFEELFDLANSDATSTSRFSFSVSVFEIYNEQVRDLLWETESNLPKI 287

Query: 61   RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGE 120
             + S ES  EL QE+ DNPLEFS VLK AF++RG+D SKFNV+HLI+ IHIYY+N ITGE
Sbjct: 288  NMGSHESVTELEQERTDNPLEFSSVLKYAFENRGDDKSKFNVTHLIVTIHIYYSNTITGE 347

Query: 121  NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
            N+YSKLSLVDLAGSEGL  E+D GE +TD LHVM S+SALGDVLSSLTS KD +PYENS+
Sbjct: 348  NMYSKLSLVDLAGSEGLTVENDGGEHVTDRLHVMNSISALGDVLSSLTSEKDSIPYENSI 407

Query: 181  LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDI 240
            LT++LADSLG SSKTLMIVNICP+A N+SET+S LN+++RAR+TV SLGNRDTIKKWRD+
Sbjct: 408  LTRILADSLGGSSKTLMIVNICPSAENLSETISCLNYAARARNTVPSLGNRDTIKKWRDV 467

Query: 241  ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
            A+DARKEL ++E+E Q+L+QE+LGL+Q+LK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSE
Sbjct: 468  ASDARKELLDKERENQNLQQEVLGLKQSLKDANDQCVLLYSEVQRAWKVSFTLQSDLKSE 527

Query: 301  NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
            N ML +KH++EKEQN+QLR Q+AQLLQL+QEQK+Q+QQ+DSTI+ LQAKI  +ESQ    
Sbjct: 528  NTMLVEKHRLEKEQNSQLRTQIAQLLQLDQEQKLQLQQQDSTIQNLQAKITDLESQ---- 583

Query: 361  LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420
               SE  +T   + +P      +     ++SS+V+KKLEEELKKRDALIERLHEENEKLF
Sbjct: 584  --VSESDTTRAGDALP------KAAESTIESSSVTKKLEEELKKRDALIERLHEENEKLF 635

Query: 421  DRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVA 480
            DRLTEK+ +VS+ Q+SSP S+ S N+QP  + RN+        + A LP + +K EG + 
Sbjct: 636  DRLTEKSMAVST-QVSSPSSRASPNIQPASVNRNNR------AEAAALPSTPNKNEGAIT 688

Query: 481  LVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH 540
            +VK+ SE  KTTPAGEYLTAALNDF+PE Y+ LA I+DGANKLLMLVLAAVIKAGASREH
Sbjct: 689  VVKTGSELAKTTPAGEYLTAALNDFDPEDYEGLAAIADGANKLLMLVLAAVIKAGASREH 748

Query: 541  EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK 600
            EILAEIRD+VF+FI+KME  RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVE FLEK
Sbjct: 749  EILAEIRDSVFSFIQKMESRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVESFLEK 808

Query: 601  SNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQ 660
             NTGRS+S+SRGSSP RSPV Y+D +   FK+N+KPE+K+KL+SVV RMRG++QD+ R Q
Sbjct: 809  PNTGRSKSTSRGSSPGRSPVRYLDMQTHRFKVNIKPERKNKLASVVSRMRGLEQDSGRQQ 868

Query: 661  VTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGG 720
            VTG KLRE+Q+EAKSFA GNK+LAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG
Sbjct: 869  VTGVKLREMQDEAKSFAIGNKSLAALFVHTPAGELQRQIRLWLAENFEFLSVTADDVSGG 928

Query: 721  TTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATE 780
            TTGQLELLSTAIMDGWMAGLG AVPP TDALG+LLSEYAKRVY SQ+QH+KDIAGTLA E
Sbjct: 929  TTGQLELLSTAIMDGWMAGLGAAVPPHTDALGRLLSEYAKRVYTSQMQHMKDIAGTLAAE 988

Query: 781  DAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASL 840
            +AEDA QV+KLRSALESVDH+RRK+LQQM+SD ALL LEEG SPI+NPSTAAED+RLASL
Sbjct: 989  EAEDAGQVAKLRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIQNPSTAAEDSRLASL 1048

Query: 841  ISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADAR 900
            ISLDGIL QVKD  RQ+SV+ LS+SKK A+L +LDEL ERMPSLLDIDHPCAQR+IA AR
Sbjct: 1049 ISLDGILKQVKDITRQASVHVLSKSKKTALLEALDELTERMPSLLDIDHPCAQREIATAR 1108

Query: 901  RMVEVLQQMRSDVALLTLEEGGSP 924
            ++VE + +  ++  LL    G  P
Sbjct: 1109 QLVETIPEQENN-NLLEYSHGRRP 1131

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	956
UNIPROTKB|H3BTL6	280	KIFC3 "Kinesin-like protein KI	0.246	0.842	0.353	3.7e-28
TAIR|locus:2101645	1087	KP1 "kinesin-like protein 1" [	0.261	0.229	0.338	1.3e-27
TAIR|locus:2148543	987	ATK4 "kinesin 4" [Arabidopsis	0.241	0.234	0.370	1.8e-27
UNIPROTKB|F1M8I8	778	Kifc3 "Protein Kifc3" [Rattus	0.246	0.303	0.357	3.7e-27
MGI|MGI:109202	824	Kifc3 "kinesin family member C	0.246	0.286	0.357	4.3e-27
UNIPROTKB|F1LPW9	824	Kifc3 "Protein Kifc3" [Rattus	0.246	0.286	0.357	4.3e-27
ZFIN|ZDB-GENE-060526-350	374	si:dkey-96l17.6 "si:dkey-96l17	0.259	0.663	0.334	9.3e-27
UNIPROTKB|F1P110	399	KIFC3 "Uncharacterized protein	0.243	0.583	0.357	1.5e-26
TAIR|locus:2014129	1140	AT1G18410 [Arabidopsis thalian	0.264	0.221	0.35	1.7e-26
UNIPROTKB|E1BFA7	833	LOC539231 "Uncharacterized pro	0.246	0.283	0.361	2e-26

UNIPROTKB|H3BTL6 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 3.7e-28, P = 3.7e-28
 Identities = 87/246 (35%), Positives = 132/246 (53%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             MEG++ + G+  R  + LF     +  +   +   V+  E+YNE LR+LL +      +I
Sbjct:     1 MEGTAENPGINQRALQLLFS-EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 59

Query:    61 RL---QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
             RL    S +  +  L + +V +  + +KV +    +R  + +  N     SH ++++ + 
Sbjct:    60 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 119

Query:   113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
               +  TG     KL+LVDLAGSE +      G R+ +  H+ KSLSALGDV+++L SR+ 
Sbjct:   120 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 179

Query:   173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG-NR 231
              VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G  R
Sbjct:   180 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGLRR 239

Query:   232 DTIKKW 237
               +  W
Sbjct:   240 AELGSW 245

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 89/263 (33%), Positives = 140/263 (53%)

Query:     9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA-KIRLQSLES 67
             G+  R   +LF LSN+ T     +   V + E+YNEQ+R+LL   G+     IR  S  +
Sbjct:   483 GVNYRALRDLFQLSNARTHVVT-YEIGVQMIEIYNEQVRDLLVSDGSSRRLDIRNNSQLN 541

Query:    68 SIELVQEK---VDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITGE 120
              + +       V N  +   +++   ++R    +  N     SH ++ +H+    L +G 
Sbjct:   542 GLNVPDANLIPVSNTRDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVQGKELASGS 601

Query:   121 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
              L   L LVDLAGSE +   +  GER+ +  H+ KSLSALGDV+ +L  +   VPY NS 
Sbjct:   602 ILRGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVIYALAQKSSHVPYRNSK 661

Query:   181 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG--NRDT--IKK 236
             LT+VL DSLG  +KTLM V+I P    + ET+S+L F+ R  S  L     N++T  I+ 
Sbjct:   662 LTQVLQDSLGGQAKTLMFVHINPEVNAVGETISTLKFAQRVASIELGAARSNKETGEIRD 721

Query:   237 WRDIANDARKELYEREKEIQDLK 259
              +D  +  +  + ++E E++ L+
Sbjct:   722 LKDEISSLKSAMEKKEAELEQLR 744

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IMP

TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 92/248 (37%), Positives = 141/248 (56%)

Query:     9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA-KIRLQSL-- 65
             G+  R   +LF LSN     T+ +  +V + E+YNEQ+R+LL Q G     +IR  S   
Sbjct:   500 GVNYRALADLFLLSNQRKDTTS-YEISVQMLEIYNEQVRDLLAQDGQTKRLEIRNNSHNG 558

Query:    66 ----ESSIELVQEKVD--NPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 119
                 E+S+  V    D    ++   + ++   +  ND S  + SH  + +H+   +L +G
Sbjct:   559 INVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRS--SRSHSCVTVHVQGRDLTSG 616

Query:   120 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 179
               L+  + LVDLAGSE +   + +G+R+ +  H+ KSLSALGDV+SSL+ +   VPY NS
Sbjct:   617 SILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNS 676

Query:   180 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG--NRDT--IK 235
              LT++L DSLG S+KTLM V+I P    + ET+S+L F+ R  S  L     N+D   +K
Sbjct:   677 KLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVK 736

Query:   236 KWRD-IAN 242
             + ++ IAN
Sbjct:   737 ELKEQIAN 744

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1M8I8 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)]

 Score = 339 (124.4 bits), Expect = 3.7e-27, P = 3.7e-27
 Identities = 88/246 (35%), Positives = 136/246 (55%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             MEG+  + G+  R  + LF     +  +  ++N  V+  E+YNE LR+LL +      +I
Sbjct:   490 MEGTPENPGINQRALQLLFS-EVQEKASDWQYNITVSAAEIYNEVLRDLLGKEPQEKLEI 548

Query:    61 RL---QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
             RL    S +  +  L + +V +  + +KV +  + +R  + +  N     SH ++++ + 
Sbjct:   549 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVR 608

Query:   113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
               +  TG     KL+LVDLAGSE +      G R+ +  H+ +SLSALGDV+++L SR+ 
Sbjct:   609 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQG 668

Query:   173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
              VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G+R 
Sbjct:   669 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGSRR 728

Query:   233 T-IKKW 237
             T +  W
Sbjct:   729 TELGSW 734

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

MGI|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 4.3e-27, P = 4.3e-27
 Identities = 88/246 (35%), Positives = 136/246 (55%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             MEG+  + G+  R  + LF     +  +  ++N  V+  E+YNE LR+LL +      +I
Sbjct:   536 MEGTPENPGINQRALQLLFS-EVQEKASDWQYNITVSAAEIYNEVLRDLLGKEPQEKLEI 594

Query:    61 RL---QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
             RL    S +  +  L + +V +  + +KV +  + +R  + +  N     SH ++++ + 
Sbjct:   595 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVR 654

Query:   113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
               +  TG     KL+LVDLAGSE +      G R+ +  H+ +SLSALGDV+++L SR+ 
Sbjct:   655 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQG 714

Query:   173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
              VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G+R 
Sbjct:   715 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLRFAERVRSVELGPGSRR 774

Query:   233 T-IKKW 237
             T +  W
Sbjct:   775 TELGSW 780

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005871 "kinesin complex" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005915 "zonula adherens" evidence=ISO

GO:0007017 "microtubule-based process" evidence=IDA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0008569 "minus-end-directed microtubule motor activity" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045218 "zonula adherens maintenance" evidence=ISO

GO:0090136 "epithelial cell-cell adhesion" evidence=ISO

UNIPROTKB|F1LPW9 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)]

 Score = 339 (124.4 bits), Expect = 4.3e-27, P = 4.3e-27
 Identities = 88/246 (35%), Positives = 136/246 (55%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             MEG+  + G+  R  + LF     +  +  ++N  V+  E+YNE LR+LL +      +I
Sbjct:   536 MEGTPENPGINQRALQLLFS-EVQEKASDWQYNITVSAAEIYNEVLRDLLGKEPQEKLEI 594

Query:    61 RL---QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
             RL    S +  +  L + +V +  + +KV +  + +R  + +  N     SH ++++ + 
Sbjct:   595 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVR 654

Query:   113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
               +  TG     KL+LVDLAGSE +      G R+ +  H+ +SLSALGDV+++L SR+ 
Sbjct:   655 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQG 714

Query:   173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
              VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G+R 
Sbjct:   715 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGSRR 774

Query:   233 T-IKKW 237
             T +  W
Sbjct:   775 TELGSW 780

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-060526-350 si:dkey-96l17.6 "si:dkey-96l17.6" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 9.3e-27, P = 9.3e-27
 Identities = 88/263 (33%), Positives = 142/263 (53%)

Query:     9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK-IRLQSLES 67
             GL  R F  +F++   D  +   F  +  + ELYN++L++L         K I ++    
Sbjct:   118 GLIPRTFTRIFEIIQ-DNESKFEFKVSAYMLELYNDRLQDLFVSPAEAFNKRIEIKRDRK 176

Query:    68 SIELVQ--EKVD--NPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLITG 119
              +   Q  E  D  +  E   + +    +R    +K NV    SHLII I I   NL  G
Sbjct:   177 GLVFAQGAETKDAASAGELFALFEQGSANRHIAATKMNVESSRSHLIIGIMIESRNLTNG 236

Query:   120 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 179
                + KLSLVDLAGSE         +++ +   + KSLSALGDV+S+L+  +  VPY N+
Sbjct:   237 SVSFGKLSLVDLAGSERAAKTGAKDDQLKEANSINKSLSALGDVISALSMEQPHVPYRNN 296

Query:   180 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRD 239
              LT+++ DSLG ++KTLMI+NI P+  N+ ETL+SL +++R ++ + +   R+   K  +
Sbjct:   297 KLTQLMQDSLGGNAKTLMILNISPSDCNLDETLTSLIYATRVKA-ITNNAQRNVDSK--E 353

Query:   240 IANDARKELYEREKEIQDLKQEI 262
             IA    KE+  + K  Q +++++
Sbjct:   354 IAQ--LKEVILKLKSGQPVEEDV 374

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P110 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 89/249 (35%), Positives = 136/249 (54%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTG--- 54
             MEG+S + G+  R  + LF    S   A   +  +V+V E+YNE LR+LL   PQ     
Sbjct:   105 MEGTSANPGINQRALQLLFSEVRSKA-ADWDYAISVSVAEIYNEALRDLLGKEPQEKLEI 163

Query:    55 ----NGLAKIRLQSL-ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 109
                 +G  ++ +  L E S++ V++ ++   EF  V +    +  N+ S  + SH ++++
Sbjct:   164 KLCPDGSGQLYVPGLTEFSVQSVED-INKVFEFGHVNRVTECTNLNEHS--SRSHALLIV 220

Query:   110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
              +   +  TG     KL+LVDLAGSE +      G R+ +  ++ +SLSALGDV+ +L S
Sbjct:   221 TVRGLDRSTGLRTTGKLNLVDLAGSERVGRSGAEGSRLREAQYINRSLSALGDVIYALRS 280

Query:   170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS-L 228
             R+  VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  +
Sbjct:   281 RQGHVPFRNSKLTYLLQDSLSGDSKTLMMVQVSPAEKNSSETLCSLKFAERVRSVELGPV 340

Query:   229 GNRDTIKKW 237
               +  +  W
Sbjct:   341 SRKAELVSW 349

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0005915 "zonula adherens" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0045218 "zonula adherens maintenance" evidence=IEA

GO:0090136 "epithelial cell-cell adhesion" evidence=IEA

TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 91/260 (35%), Positives = 143/260 (55%)

Query:     2 EGSSHDR-GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             +G+S +  G+  R   +LF +S S  +  A +   V + E+YNEQ+R+LL    +   + 
Sbjct:   730 DGASEEEWGVNYRALNDLFRISQSRKSNIA-YEVGVQMVEIYNEQVRDLLSGILSTTQQN 788

Query:    61 RLQSLESSIELVQEKVDNPLEFSKV-LKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 119
              L   ++S+  V    D  LE   + L++   S      + + SH I+ +H+   +L TG
Sbjct:   789 GLAVPDASMYPVTSTSD-VLELMSIGLQNRVVSSTALNERSSRSHSIVTVHVRGKDLKTG 847

Query:   120 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENS 179
               LY  L LVDLAGSE +   + +G+R+ +  H+ KSLSALGDV+ SL S+   VPY NS
Sbjct:   848 SALYGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFSLASKSSHVPYRNS 907

Query:   180 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRD 239
              LT++L  SLG  +KTLM V + P+  + SE++S+L F+ R     + LG   + K  RD
Sbjct:   908 KLTQLLQSSLGGRAKTLMFVQLNPDITSYSESMSTLKFAERVSG--VELGAAKSSKDGRD 965

Query:   240 IANDARKELYER-EKEIQDL 258
             +     ++   R + EI+ L
Sbjct:   966 VRELMEQDTIARKDDEIERL 985

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|E1BFA7 LOC539231 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 89/246 (36%), Positives = 132/246 (53%)

Query:     1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             MEG+  + G+  R    LF     +  +   +   V+  E+YNE LR+LL Q      +I
Sbjct:   538 MEGTPENPGINQRALRLLFS-EVQEKASDWEYTITVSAAEIYNEVLRDLLGQEPQEKLEI 596

Query:    61 RL---QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
             RL    S +  +  L + +V +  + +KV +    +R  + +  N     SH ++++ + 
Sbjct:   597 RLCPDGSGQLYVPGLTEFQVQSVEDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 656

Query:   113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
               +  TG     KL+LVDLAGSE +      G R+ +  H+ KSLSALGDV+++L SR+ 
Sbjct:   657 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 716

Query:   173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
              VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L  G+R 
Sbjct:   717 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVELGPGSRR 776

Query:   233 T-IKKW 237
             T +  W
Sbjct:   777 TELGSW 782

GO:0090136 "epithelial cell-cell adhesion" evidence=IEA

GO:0045218 "zonula adherens maintenance" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005915 "zonula adherens" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LX99	GRIMP_ARATH	No assigned EC number	0.7268	0.9445	0.7093	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.4018.1 SubName- Full=Putative uncharacterized protein; (1269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	956
cd00106	328	cd00106, KISc, Kinesin motor domain	1e-56
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	3e-56
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	3e-55
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	5e-44
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-33
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	8e-30
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	8e-29
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	2e-28
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-27
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	8e-27
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	3e-25
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	5e-25
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	1e-24
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	3e-23
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	2e-22
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	2e-22
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	1e-17
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	6e-16
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	2e-15
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	6e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.003

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  198 bits (505), Expect = 1e-56
 Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 11/233 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGLAK 59
           M GS  D G+  R  E+LF+L +        F+ +V+  E+YNE++ +LL P+  +    
Sbjct: 96  MFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLS 155

Query: 60  IR-LQSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYY 113
           +R        ++ L + +V +  +   +L+   ++R    +  N     SH I  IH+  
Sbjct: 156 LREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQ 215

Query: 114 NNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-- 169
            N          SKL+LVDLAGSE        G+R+ +  ++ KSLSALG+V+S+L+S  
Sbjct: 216 RNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ 275

Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +K  +PY +S LT++L DSLG +SKTLMI NI P++ N  ETLS+L F+SRA+
Sbjct: 276 KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  197 bits (502), Expect = 3e-56
 Identities = 94/236 (39%), Positives = 133/236 (56%), Gaps = 12/236 (5%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK- 59
           MEG   + G+  R  E+LF+ +         +    ++ E+YNE +R+LL        K 
Sbjct: 95  MEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKL 154

Query: 60  -IRLQSL-ESSIE-LVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
            I+  S  E+ +  L +  V +P E +++L    ++R       N+ S  + SH +  + 
Sbjct: 155 EIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHS--SRSHAVFQLK 212

Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           I   NL TGE    KL+LVDLAGSE L     +G+R+ +   + KSLSALGDV+S+L S+
Sbjct: 213 IRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK 272

Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
              VPY NS LT +L DSLG +SKTLM VNI P  +N+SETL SL F+SR RS  L
Sbjct: 273 DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  193 bits (494), Expect = 3e-55
 Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 20/240 (8%)

Query: 1   MEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGL 57
           MEG     + G+  R  E+LF+           F+  V+  E+YNE++ +LL P +    
Sbjct: 91  MEGDPPEEEPGIIPRALEDLFERIEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKK 150

Query: 58  AKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
            +IR    E   +      L + +V +  E  ++L+   ++R    +  N     SH I 
Sbjct: 151 LRIR----EDPKKGVYVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIF 206

Query: 108 MIHIY-YNNLITGENLYSKLSLVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLS 165
            I +   N    G     KL+LVDLAGSE         G R+ +  ++ KSLSALG+V++
Sbjct: 207 TITVEQRNRDTDGSVKTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVIN 266

Query: 166 SLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224
           +L   +   +PY +S LT++L DSLG +SKTLMI NI P+ +N  ETLS+L F+SRA++ 
Sbjct: 267 ALAENQSSHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRFASRAKNI 326

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  162 bits (412), Expect = 5e-44
 Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 10/236 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M G+    G+  R  ++LF+  +        F+  V+  E+YNE++R+LL  +   L   
Sbjct: 97  MIGTPDSPGIIPRALKDLFEKIDKREEGWQ-FSVKVSYLEIYNEKIRDLLNPSSKKLEIR 155

Query: 61  RLQSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI--YY 113
             +     ++ L +  V +  E   +L+   ++R    +K N     SH +  I +    
Sbjct: 156 EDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKI 215

Query: 114 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--SRK 171
            N  +G    SKL+LVDLAGSE        G+R+ +  ++ KSLSALG+V+++L   S+ 
Sbjct: 216 KNSSSGSGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKS 275

Query: 172 DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
             +PY +S LT++L DSLG +SKTLMI N+ P+++N+ ETLS+L F+SRA+     
Sbjct: 276 RHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNK 331

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  132 bits (333), Expect = 1e-33
 Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 22/238 (9%)

Query: 1   MEGSSHD---RGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 56
           MEG   D   +G+  R   ++F+ +S+ D      F+  V+  E+Y E++R+LL      
Sbjct: 94  MEGPPGDPELKGIIPRIVHDIFEHISSMD--ENLEFHVKVSYLEIYMEKIRDLL-----D 146

Query: 57  LAKIRLQSLESSIELVQEK------VDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLI 106
           ++K  LQ  E     V  K      V +P E  +V+     +R    +  N     SH I
Sbjct: 147 VSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSI 206

Query: 107 IMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
            +I +   N+ TG     KL LVDLAGSE +      G+ + +   + KSLSALG+V+++
Sbjct: 207 FLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINA 266

Query: 167 LT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           LT  +   +PY +S LT++L DSLG +S+T +I+   P++ N SETLS+L F +RA++
Sbjct: 267 LTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKT 324

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  120 bits (304), Expect = 8e-30
 Identities = 78/240 (32%), Positives = 116/240 (48%), Gaps = 23/240 (9%)

Query: 1   MEG---SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELLPQTGN 55
           MEG       RG+    F  +F              F V V   E+YNE++R+LL    +
Sbjct: 99  MEGVREPPELRGIIPNSFAHIFGHIAK----AENVQFLVRVSYLEIYNEEVRDLL--GKD 152

Query: 56  GLAKIRLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
              K+ L+          +L    V N  E  K++    ++R    +  N     SH I 
Sbjct: 153 QKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIF 212

Query: 108 MIHIYYNNLITGENLY---SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
            I I  +        +    KL+LVDLAGSE       +G+R+ +   +  SLSALG+V+
Sbjct: 213 TITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVI 272

Query: 165 SSLTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           S+L   K   +PY +S LT++L DSLG +SKT+M  NI P   N  ETLS+L +++RA++
Sbjct: 273 SALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKN 332

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  118 bits (298), Expect = 8e-29
 Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 26/248 (10%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGN-GLA 58
           M G   ++G+  R  EELF    S       +   V+  E+YNE++R+LL P+  N G  
Sbjct: 106 MMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNL 165

Query: 59  KIRL-QSLESSIE-LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNVSHLIIMI- 109
           K+R    L   +E L +  V +  +   +L+   +SR       ND S  + SH +  I 
Sbjct: 166 KVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTS--SRSHAVFTIV 223

Query: 110 ----HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
                +     +T E   SK+SLVDLAGSE   +    G+R+ +  ++ KSL+ LG V+S
Sbjct: 224 LTQKKLDKETDLTTE-KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVIS 282

Query: 166 SL--------TSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 217
           +L          +   +PY +S+LT +L ++LG +SKT MI  I P   N  ETLS+L +
Sbjct: 283 ALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRY 342

Query: 218 SSRARSTV 225
           + RA+  V
Sbjct: 343 ADRAKKIV 350

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  117 bits (295), Expect = 2e-28
 Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 26/238 (10%)

Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS 68
           G+  R  + +F     +      F   V+  ELYNE++R+LL  + +   K  +Q  E S
Sbjct: 105 GIIPRAIQHIFKKI-DEKKDEPDFQLKVSFLELYNEEVRDLL--SPSTSEKSPIQIREDS 161

Query: 69  ---IELV---QEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI------- 111
              I +V   +  V++  E    L+    SR    +  N     SH I  I +       
Sbjct: 162 KGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNG 221

Query: 112 ---YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
                +       L SK   VDLAGSE L     +G+R+ + + +   L ALG+V+S+L 
Sbjct: 222 PIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALG 281

Query: 169 S---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
               +   VPY +S LT++L DSLG +S TLMI  + P  +N  ETL++L +++RAR+
Sbjct: 282 DESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARN 339

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score =  115 bits (289), Expect = 1e-27
 Identities = 70/237 (29%), Positives = 126/237 (53%), Gaps = 18/237 (7%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M G+  D GL     ++LFD           F  +++  E+YNE +R+LL  +   L  +
Sbjct: 105 MLGTDSDPGLMVLTMKDLFDKIEERKDDK-EFEVSLSYLEIYNETIRDLLSPSSGPLE-L 162

Query: 61  RLQSLESSI--ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIY 112
           R    +  +   L + +  +  E  ++L    ++R       N  S  + SH ++ I + 
Sbjct: 163 REDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATS--SRSHAVLQITVR 220

Query: 113 YNNL---ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
             +    I  +    KLSL+DLAGSE   A ++ G+R+ +  ++ +SL ALG+ +++L  
Sbjct: 221 QKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVD 280

Query: 170 RKDI---VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            K     +PY +S LT++L DSLG + KT+MI NI P++++  ET ++L +++RA++
Sbjct: 281 GKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKN 337

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score =  112 bits (283), Expect = 8e-27
 Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 30/239 (12%)

Query: 5   SHDRGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL- 62
           S   G+  R   +LF+ L + +T  + +    V+  ELYNE+L +LL    +    +R+ 
Sbjct: 114 SPHAGIIPRALYQLFEKLESQNTEYSVK----VSYLELYNEELFDLLSSESDLNKPLRIF 169

Query: 63  -----------QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
                      Q LE         V+N  E  K+L+     R    +  N     SH I 
Sbjct: 170 DDTNNKGGVVIQGLEEIT------VNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIF 223

Query: 108 MIHIYYN-NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
            I I+     I+GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+
Sbjct: 224 SITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVI 283

Query: 165 SSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           ++L  +   +PY  S LT++L DSLG  +KT +I  I P + N+ ETLS+L ++ RA++
Sbjct: 284 NALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKN 342

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score =  107 bits (268), Expect = 3e-25
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 22/233 (9%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA-- 58
           M G  ++ GL  R   +L  +      A     F+++ +E+YNE++ +LL      L   
Sbjct: 98  MLGDPNEPGLIPRTLSDLLRMG--RKQAW-TGAFSMSYYEIYNEKVYDLLEPAKKELPIR 154

Query: 59  -----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
                 I +  L S        + +  EF +    A ++R    +K N     SH ++ I
Sbjct: 155 EDKDGNILIVGLTSK------PIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRI 208

Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
            +          L  KL+L+DLAGSE      + G R+ +   +  SL  L  V+ +L  
Sbjct: 209 KVTQPASNI--QLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK 266

Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
               +PY  S LT++L DSLG  S+ +M+ NI P  +   +TLS+LNF+SR++
Sbjct: 267 GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score =  106 bits (267), Expect = 5e-25
 Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 23/241 (9%)

Query: 1   MEGSSH-DRGLYARCFEELFDLSNSDT-TATARFNFAV--TVFELYNEQLRELLPQTGNG 56
            + S H  +G+  R FE LF L   +         F    +  E+YNEQ+ +LL  T   
Sbjct: 99  DDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158

Query: 57  LAKIRLQSLESSI---ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           L KIR + ++  +    L +E V +  +  +VL     +R    +  N     SH +   
Sbjct: 159 L-KIR-EDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTC 216

Query: 110 HIYY----NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
            I       +        S+L+LVDLAGSE    +   G R+ +  ++ KSLS LG V+ 
Sbjct: 217 TIESWEKKASSTNIR--TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIM 274

Query: 166 SLT----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRA 221
           +L      ++  VPY +S LT +L DSLG ++KT +I N+ P++    ETLS+L F+ RA
Sbjct: 275 ALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRA 334

Query: 222 R 222
           +
Sbjct: 335 K 335

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score =  106 bits (265), Expect = 1e-24
 Identities = 80/234 (34%), Positives = 114/234 (48%), Gaps = 16/234 (6%)

Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR- 61
            S  DRGL  R  E++F       T T  +   V+  E+YNEQL +LL  T   L  +  
Sbjct: 103 ESYKDRGLIPRALEQVFREVAMRATKT--YTVHVSYLEIYNEQLYDLLGDTPEALESLPA 160

Query: 62  ---LQSLESSIE---LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI 111
              L+  E +I    L         E   +L     +R    +  N     SH I  IH+
Sbjct: 161 VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHL 220

Query: 112 YYNNLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
              +   G  +   SKL+LVDLAGSE +     SG+ + +  ++ KSLS L  V+++L+ 
Sbjct: 221 ESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSE 280

Query: 170 RKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +    VPY NS LT VL DSLG + KT+M+  I    +N+ ETLS+L F+ R  
Sbjct: 281 KARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score =  101 bits (254), Expect = 3e-23
 Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 31/237 (13%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELLPQTGNGLA 58
           M G  +  GLYA    ++F L      A    +  VTV  FE+Y  +L +LL    N   
Sbjct: 102 MLGDENQEGLYALAARDIFRL-----LAQPNDDLGVTVSFFEIYGGKLFDLL----ND-- 150

Query: 59  KIRLQSLESSIELVQ------EKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLI 106
           + RL  LE     VQ      + V +  E  ++++S    R       ND S  + SH I
Sbjct: 151 RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQS--SRSHAI 208

Query: 107 IMIHIYYNNLITGENLYSKLSLVDLAGSE-GLIAEDDSGERITDVLHVMKSLSALGDVLS 165
           + I +    L     L  KLS +DLAGSE G    +   +   +   + KSL AL + + 
Sbjct: 209 LQIILKNKKL---NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIR 265

Query: 166 SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +L S K  VP+  S LT+VL DS   +SKT+MI  I P+A++   TL++L ++ R +
Sbjct: 266 ALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M G   + G+      ++F            F   V+  E+YNE++++LL  +   L +I
Sbjct: 91  MSGDEQEPGIIPLAVRDIFQRIQDTPDRE--FLLRVSYLEIYNEKIKDLLSPSPQEL-RI 147

Query: 61  R--LQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI--- 111
           R           L +E V +P    +++    ++R    + FN     SH I  + I   
Sbjct: 148 REDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESR 207

Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK 171
              +  +G    S L+L+DLAGSE   ++  +GER  +   + KSL  LG V+S L+  K
Sbjct: 208 ERGDSESGTVRVSTLNLIDLAGSER-ASQTGAGERRKEGSFINKSLLTLGTVISKLSEGK 266

Query: 172 DI--VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           +   +PY +S LT++L  SL  +++T +I  I P ++++ ETL++L F+SRA+ 
Sbjct: 267 NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKK 320

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score =  102 bits (255), Expect = 2e-22
 Identities = 101/455 (22%), Positives = 189/455 (41%), Gaps = 19/455 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M G+  + G+     +ELF     D + T  F  +++  E+YNE++ +LL      L   
Sbjct: 107 MSGTEEEPGIIPLSLKELFS-KLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIR 165

Query: 61  RLQSLESSIELVQEK-VDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNN 115
               L   +  + EK V +  E   +L+   ++R    ++ N     SH I  I +   N
Sbjct: 166 EDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKN 225

Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DI 173
            ++G +  SKLSLVDLAGSE      + G R+ +   + KSL  LG+V+++L  +K    
Sbjct: 226 KVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGH 285

Query: 174 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDT 233
           +PY  S LT++L DSLG +  T +I  I P++ +  ET+++L F+SRA+S    +    +
Sbjct: 286 IPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345

Query: 234 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTL 293
               R+I      E  + +      + EIL  R+  + +      ++  +Q   K + TL
Sbjct: 346 SDSSREI------EEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKETETL 399

Query: 294 QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 353
                  + ++        E+   L+ +  +     Q  +++I +     +   +K  + 
Sbjct: 400 ---KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK 456

Query: 354 ESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 413
             + N+  H      +   E         + +   + SSA +K      +      + L+
Sbjct: 457 IHKLNKLRHDLSSLLSSIPEETSDRVESEKAS--KLRSSASTKLNLRSSRSHSKFRDHLN 514

Query: 414 EENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQP 448
             N    +    +     S +  S      +    
Sbjct: 515 GSNSSTKELSLNQVDLAGSERKVSQSVGELLRETQ 549

Length = 568

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 103 SHLIIMIHIYYNN---LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSA 159
           SH +  IH    N     T +    K++LVDLAGSE +      G R+T+  ++ KSLS 
Sbjct: 83  SHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLST 142

Query: 160 LGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICP 203
           LG+V+S+L  R   VPY  S LT++L DSLG +S+TLM+  I P
Sbjct: 143 LGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 80.1 bits (198), Expect = 6e-16
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTGNGL 57
           M+GS  D G+  R  + +F+           ++  V+  E+YN  + +LL   P +    
Sbjct: 106 MQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPSSTKKR 158

Query: 58  AKIRL---QSLESSIELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLI--- 106
             +RL    +    +  + E +V +  E  +V K   ++R    +K N     SH +   
Sbjct: 159 QSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTI 218

Query: 107 --IMIHIYYNNLITGEN---LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALG 161
             +      +  +  +      S+LSLVDLAGSE      ++GER+ +  ++  SL  LG
Sbjct: 219 KLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLG 278

Query: 162 DVLSSL------TSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
             +  L       S   +VPY +S LT +  +      K  MIVN+ P A++  ETL  +
Sbjct: 279 KCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVM 338

Query: 216 NFSSRAR 222
            FS+ A+
Sbjct: 339 KFSAIAQ 345

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 80.7 bits (199), Expect = 2e-15
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 18/238 (7%)

Query: 4   SSHDRGLYARCFEELFDLSNSDTTATA----RFNFAVTVFELYNEQLRELL-PQTGNGLA 58
           S   +GL  R FE LF   N +    A    ++    +  E+YNEQ+ +LL P   N   
Sbjct: 196 SGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQI 255

Query: 59  KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII--MIHIY 112
           +  ++S      L +E V    + +++L     +R    +  N     SH +   ++   
Sbjct: 256 REDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESR 315

Query: 113 YNNLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS----- 165
             ++  G + +  S+++LVDLAGSE       +G+R+ +  ++ +SLS LG++++     
Sbjct: 316 CKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEI 375

Query: 166 SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           S T ++  +PY +S LT +L +SLG ++K  M+  I P+ +  SET S+L F+ RA++
Sbjct: 376 SQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKA 433

Length = 1320

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 3e-06
 Identities = 58/300 (19%), Positives = 116/300 (38%), Gaps = 27/300 (9%)

Query: 241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
             + +KELY    EI  L+Q+   LR+ L     Q   L  ++++       L  +L   
Sbjct: 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 301 NY---MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357
                 L ++ +  + +  +L  ++ +L    +E + Q++   S +  L+ +I S+ ++ 
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 358 NEA---LHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHE 414
                 L   E R     + +  +   L    +  +  A  ++LEEEL++    +ERL E
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKL-EEAELKELQAELEELEEELEELQEELERLEE 461

Query: 415 ENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADK 474
             E+L + L E   ++ + +      +  ++     + R   N +G    V  L  +   
Sbjct: 462 ALEELREELEEAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSG 517

Query: 475 TEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKA 534
             G + ++   SE I       Y  A             A +      +++  L A  KA
Sbjct: 518 LSGILGVL---SELISVDE--GYEAAI-----------EAALGGRLQAVVVENLNAAKKA 561

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.6 bits (111), Expect = 7e-05
 Identities = 33/201 (16%), Positives = 91/201 (45%), Gaps = 19/201 (9%)

Query: 242 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSEN 301
           +   +EL E ++E+++ ++EI  L+  L+E  ++      E+Q+          +L+ E 
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREE----LEELQEELLELKEEIEELEGEI 304

Query: 302 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361
            +L ++ +  + +  +L  ++ +L +  +  K ++++R++ ++ L+  +  +E  + E  
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE-- 362

Query: 362 HSSEVRSTIRSEPMPAVSSVLRTTGDGMDS--SAVSKK------LEEELKKRDALIERLH 413
                     S  +  +  +     + +    + +++       L+ E++  +  +ERL 
Sbjct: 363 -----LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 414 EENEKLFDRLTEKASSVSSPQ 434
           E  E L + L E  + +   Q
Sbjct: 418 ERLEDLKEELKELEAELEELQ 438

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 40/196 (20%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSE 300
             + ++EL E ++EI++L+ EI  LR+ L+E  ++   L   +++       L+  +++ 
Sbjct: 283 LEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEE-------LKEKIEAL 335

Query: 301 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360
              L ++  + +E    L        +LE++    +++ +   + L+ ++  +E++  E 
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Query: 361 LHS-SEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEE---ELKKRDALIERLHEEN 416
            +   E++  I S          R      +   +  +LEE   EL++ +  +E L E+ 
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 417 EKLFDRLTEKASSVSS 432
           E+L DRL E    ++ 
Sbjct: 456 EELRDRLKELERELAE 471

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 231 RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS 290
              +++  +      KEL E E EI++L++ +    + L EA  +   L  ++++     
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ----- 793

Query: 291 FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE---QKMQIQQRDSTIKTLQ 347
             L+ +LK+    L +        N +  N   +L  LE+     + +++  +  I+ L 
Sbjct: 794 --LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 348 AKINSIESQRN------EALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEE 401
             I S+ ++        E L S           +    ++LR+     +   +S++L E 
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS-----ELEELSEELREL 906

Query: 402 LKKRDALIERLHEENEKL 419
             KR  L   L E  EKL
Sbjct: 907 ESKRSELRRELEELREKL 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 36/201 (17%), Positives = 85/201 (42%), Gaps = 8/201 (3%)

Query: 230 NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV 289
             + I++  +   +  K L E  KE+++L++E+  LR+ L+E + Q   L  ++ +    
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 290 SFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAK 349
              L+  +   +  L +     +E   +L     +  +   E + +I++ ++ I+ L+ +
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERL----EEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 350 INSIESQ---RNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGM-DSSAVSKKLEEELKKR 405
           + ++          L      +    E + ++   +  T   + D     ++L E+++  
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 406 DALIERLHEENEKLFDRLTEK 426
            A IE L E  E+L   L   
Sbjct: 858 AAEIEELEELIEELESELEAL 878

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 37/206 (17%), Positives = 89/206 (43%), Gaps = 27/206 (13%)

Query: 231  RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS 290
               ++          +E+ E E+EI++L++++  L + L+E   +   L  E+++     
Sbjct: 813  ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE----- 867

Query: 291  FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 350
              L+++ +     L +  + ++E   +LR   ++L +L++E    I++    ++ L+AK+
Sbjct: 868  --LEAEKEELEDELKELEEEKEELEEELRELESELAELKEE----IEKLRERLEELEAKL 921

Query: 351  NSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG---------DGMDSSAVS--KKLE 399
              +E +  E     E             + + R              ++  A+   +++E
Sbjct: 922  ERLEVELPELEEELE-----EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976

Query: 400  EELKKRDALIERLHEENEKLFDRLTE 425
            E  ++  +  E L E  EKL + + E
Sbjct: 977  ERYEELKSQREDLEEAKEKLLEVIEE 1002

Length = 1163

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 16/188 (8%)

Query: 230 NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV 289
           N + IK  ++   + +K     EK + ++ QE   L + LK+A ++   L  +++   K 
Sbjct: 25  NLELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKD 84

Query: 290 SFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAK 349
             +L++ LK+    L  + K  K ++  L     +  ++E+E+     + ++ I+ +Q K
Sbjct: 85  KQSLKN-LKARLKELEKELKNLKWESEVLE---QRFEKVERERDELYDKFEAAIQDVQQK 140

Query: 350 I---NSIESQRNEALHSS-EVRSTIRSEPMPAVSSVLRTTG-DGMDSSAVSKKLEEELKK 404
               N +  Q+ EAL+   E +    +E       VL     D     AVS+KL++ L++
Sbjct: 141 TGLKNLLLEQKLEALNEELEKKEAQLNE-------VLAAANLDPAALQAVSEKLDDVLEE 193

Query: 405 RDALIERL 412
           ++ LI+ L
Sbjct: 194 KNQLIKDL 201

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 34/203 (16%), Positives = 74/203 (36%), Gaps = 43/203 (21%)

Query: 231 RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS 290
           R  +KK +       K L   E E++DL+ ++  L   ++E  ++        ++     
Sbjct: 30  RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER----IKRAEEKLSAV 85

Query: 291 FTL--QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQA 348
                   L  E         I KE+   L +++A+L++  ++ + +       I+ L+ 
Sbjct: 86  KDERELRALNIEIQ-------IAKERINSLEDELAELMEEIEKLEKE-------IEDLKE 131

Query: 349 KINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 408
           ++  +E    EA    E                          + + ++ +E   KR+ L
Sbjct: 132 RLERLEKNLAEAEARLEEE-----------------------VAEIREEGQELSSKREEL 168

Query: 409 IERLHEENEKLFDRLTEKASSVS 431
            E+L  E    ++R+ +    V 
Sbjct: 169 KEKLDPELLSEYERIRKNKKGVG 191

Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	956
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245	1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
KOG4280	574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0247	809	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0242	675	consensus Kinesin-like protein [Cytoskeleton]	100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0241	1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0244	913	consensus Kinesin-like protein [Cytoskeleton]	100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
KOG0246	676	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	99.97
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	99.93
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	97.45
PRK11637	428	AmiB activator; Provisional	97.25
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.79
PRK11637	428	AmiB activator; Provisional	96.73
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.67
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.48
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.4
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.3
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.29
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.13
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.84
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.7
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.68
PHA02562	562	46 endonuclease subunit; Provisional	95.62
COG4372	499	Uncharacterized protein conserved in bacteria with	95.62
PRK09039	343	hypothetical protein; Validated	95.56
PRK09039	343	hypothetical protein; Validated	95.51
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.48
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.4
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.39
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.3
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.16
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.08
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.02
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.83
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.83
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	94.8
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.78
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.77
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.69
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	94.67
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.61
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.6
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.57
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.54
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.52
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.36
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.34
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.34
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	94.3
PRK02224	880	chromosome segregation protein; Provisional	94.3
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.16
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.86
COG4372	499	Uncharacterized protein conserved in bacteria with	93.83
PRK04863	1486	mukB cell division protein MukB; Provisional	93.78
PHA02562	562	46 endonuclease subunit; Provisional	93.77
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.75
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.73
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.72
PRK02224	880	chromosome segregation protein; Provisional	93.71
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.66
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.62
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.57
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.47
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.37
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.33
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.31
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.29
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.22
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.21
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.21
PRK03918	880	chromosome segregation protein; Provisional	93.13
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.02
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.95
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.89
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.8
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.78
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	92.72
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.64
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.6
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.58
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.57
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.5
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	92.48
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.43
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.43
PRK03918	880	chromosome segregation protein; Provisional	92.39
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.37
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	92.35
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	92.26
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	92.2
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.18
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	92.12
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.06
KOG2991	330	consensus Splicing regulator [RNA processing and m	91.87
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.85
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.72
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.7
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.68
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	91.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.42
KOG0963	629	consensus Transcription factor/CCAAT displacement	91.42
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	91.35
PRK11281	1113	hypothetical protein; Provisional	91.06
PRK04863	1486	mukB cell division protein MukB; Provisional	91.03
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.99
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.95
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.93
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	90.91
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	90.67
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.65
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	90.59
KOG0964	1200	consensus Structural maintenance of chromosome pro	90.51
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.47
PRK04778	569	septation ring formation regulator EzrA; Provision	90.4
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.38
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	90.15
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	90.03
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.96
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.84
KOG4673	961	consensus Transcription factor TMF, TATA element m	89.69
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.62
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.04
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.88
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.73
COG5185	622	HEC1 Protein involved in chromosome segregation, i	88.59
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.3
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.22
PRK04778	569	septation ring formation regulator EzrA; Provision	88.17
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	88.11
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	87.64
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	87.47
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	87.47
KOG0018	1141	consensus Structural maintenance of chromosome pro	87.17
KOG0964	1200	consensus Structural maintenance of chromosome pro	87.06
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	86.81
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	86.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.68
PRK10884	206	SH3 domain-containing protein; Provisional	86.52
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	86.47
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	86.31
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.2
PRK01156	895	chromosome segregation protein; Provisional	85.99
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	85.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.61
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	85.31
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.24
KOG0018	1141	consensus Structural maintenance of chromosome pro	85.13
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	85.04
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.04
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	84.98
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	84.81
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	84.81
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	84.68
KOG2991	330	consensus Splicing regulator [RNA processing and m	84.24
PF15294	278	Leu_zip: Leucine zipper	84.23
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.22
PRK11281	1113	hypothetical protein; Provisional	84.15
PRK10884	206	SH3 domain-containing protein; Provisional	84.04
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	84.04
PRK01156	895	chromosome segregation protein; Provisional	83.96
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.86
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.68
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	83.57
KOG4807	593	consensus F-actin binding protein, regulates actin	83.13
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	82.84
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	82.72
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	82.6
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	82.51
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	82.35
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.19
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	81.85
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.6
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	81.28
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.75
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	80.7
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	80.53
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	80.3
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	80.3
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	80.29
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.26
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.17
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	80.16

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=4.1e-56  Score=529.99  Aligned_cols=381  Identities=24%  Similarity=0.330  Sum_probs=274.5

Q ss_pred             CCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC--CceEeec-----ccc--cccceeEE
Q 002175            4 SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--LAKIRLQ-----SLE--SSIELVQE   74 (956)
Q Consensus         4 s~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~--~~~v~~~-----~~~--~V~gLtev   74 (956)
                      .+.+.|||||++.+||+.+..   .+.+|+|+|||+|+|||.++|||++....  ..++..+     +.+  .|.|+.++
T Consensus       157 l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi  233 (1041)
T KOG0243|consen  157 LPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEI  233 (1041)
T ss_pred             CCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceee
Confidence            678899999999999999974   44899999999999999999999986653  2222222     223  45599999


Q ss_pred             EeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC---ceeeeeeEEeeccCCCccccCCCcchhh
Q 002175           75 KVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG---ENLYSKLSLVDLAGSEGLIAEDDSGERI  147 (956)
Q Consensus        75 ~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~---~~~~SkLsfVDLAGSER~~kt~s~G~rl  147 (956)
                      .|.|..|++.+|..|...|++++|.    |||||+||+|+|.......+   -..+|||+||||||||.++++|+.+.|.
T Consensus       234 ~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RA  313 (1041)
T KOG0243|consen  234 IVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRA  313 (1041)
T ss_pred             eecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchh
Confidence            9999999999999999999999997    99999999999987644322   3567999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccc
Q 002175          148 TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS  227 (956)
Q Consensus       148 kEa~~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~  227 (956)
                      +||+.||+||++||+||+||.++..|||||+|||||||||+|||.++|+||+||||+..+++||++||.||.|||+|+++
T Consensus       314 rEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNK  393 (1041)
T KOG0243|consen  314 REAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNK  393 (1041)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH--HHHHHHHHhhhHHHHHHHHH
Q 002175          228 LGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK--AWKVSFTLQSDLKSENYMLA  305 (956)
Q Consensus       228 ~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~--~~k~~~eLE~eL~~e~~~Le  305 (956)
                      |..+..+.               +...+++|-.||++|+..+....+.+-.+..+-.-  ..........++.+....++
T Consensus       394 PevNQkl~---------------K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~  458 (1041)
T KOG0243|consen  394 PEVNQKLM---------------KKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELE  458 (1041)
T ss_pred             CccchHHH---------------HHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665443               34566777777888887777776665443322111  00001111122222222222


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 002175          306 DKHKIEKEQNAQL---RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL  382 (956)
Q Consensus       306 ek~k~~kee~~qL---q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~  382 (956)
                      ...+..+...+.+   ......+....+.++.+++....++..+++++.+++.+|.+.....+.                
T Consensus       459 ~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~----------------  522 (1041)
T KOG0243|consen  459 NLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ----------------  522 (1041)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            2222211111111   112223333444466666666666777777777766665433322221                


Q ss_pred             cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          383 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       383 k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                              ......++.....++...++.-..+...|+.+|..+
T Consensus       523 --------~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~  558 (1041)
T KOG0243|consen  523 --------QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK  558 (1041)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                    111122333334445555566666777777777777

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=3.9e-55  Score=513.32  Aligned_cols=257  Identities=30%  Similarity=0.466  Sum_probs=233.1

Q ss_pred             CCCCC--CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCC-cCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-QTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~--~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~-~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|..  +++|||||+|++||.+|......+..|.|.|||+|||||.|+|||+ |.++..++++..+.  .||.+|+...
T Consensus       105 MMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~a  184 (1221)
T KOG0245|consen  105 MMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLA  184 (1221)
T ss_pred             eeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcc
Confidence            78887  9999999999999999998778889999999999999999999999 87788888888775  5788999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--CC--ceeeeeeEEeeccCCCccccCCCcchhh
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLYSKLSLVDLAGSEGLIAEDDSGERI  147 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~--~~~~SkLsfVDLAGSER~~kt~s~G~rl  147 (956)
                      |+|+.|+.+++..|++.|++++|+    |||||+||||.+.|....  ++  ...+|+|+|||||||||++.+|+.|.|+
T Consensus       185 V~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RL  264 (1221)
T KOG0245|consen  185 VTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRL  264 (1221)
T ss_pred             cccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccch
Confidence            999999999999999999999998    999999999999997553  32  4678999999999999999999999999


Q ss_pred             HhHHHHhhhHHHHHHHHHHhhcC-------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175          148 TDVLHVMKSLSALGDVLSSLTSR-------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR  220 (956)
Q Consensus       148 kEa~~INkSL~aLg~VI~aLs~k-------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr  220 (956)
                      +||.+||+||++||+||.+|++.       +.+||||||-||+||++.|||||||+||+++||...||+|||+||+||.|
T Consensus       265 KEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdR  344 (1221)
T KOG0245|consen  265 KEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADR  344 (1221)
T ss_pred             hcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhH
Confidence            99999999999999999999862       35899999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          221 ARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN  273 (956)
Q Consensus       221 AK~I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~  273 (956)
                      ||+|++.+..+..                ...+.|.+|++|+.+|+..+....
T Consensus       345 AK~Iv~~avVNEd----------------pnaKLIRELreEv~rLksll~~~~  381 (1221)
T KOG0245|consen  345 AKQIVNNAVVNED----------------PNAKLIRELREEVARLKSLLRAQG  381 (1221)
T ss_pred             hhhhhccceeCCC----------------ccHHHHHHHHHHHHHHHHHHhccc
Confidence            9998775544332                345688999999999999887653

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=100.00  E-value=8.9e-53  Score=474.37  Aligned_cols=230  Identities=33%  Similarity=0.489  Sum_probs=211.0

Q ss_pred             CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc--cccccceeEEE
Q 002175            1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~--~~~V~gLtev~   75 (956)
                      |+|..+   ..|||||++++||+.|.. .+.+.+|.|+|||||||+|+|+|||++.+.+. .+..+.  ..+|.|+++..
T Consensus       100 m~G~~~d~~~~GIipRi~~diF~~Iys-~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nl-svheDK~~v~~vkG~t~~~  177 (607)
T KOG0240|consen  100 MEGIGHDPEEMGIIPRILNDIFDHIYS-MEENLEFHVKVSYFEIYMEKIRDLLDPEKTNL-SVHEDKNRVPYVKGVTERF  177 (607)
T ss_pred             ecccCCChhhcCcHHHHHHHHHHHHhc-CcccceEEEEEEeehhhhhHHHHHhCcccCCc-eeecccCCCceecCceeEE
Confidence            556554   679999999999999986 46678999999999999999999999877665 444442  35678999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |.++++++++++.|..+|+++.|+    |||||+||+|+|.|.+..+.....|+|.||||||||+++++|+.|.-+.||.
T Consensus       178 v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK  257 (607)
T KOG0240|consen  178 VSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAK  257 (607)
T ss_pred             ecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCccchhHHHHh
Confidence            999999999999999999999988    9999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCc
Q 002175          152 HVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN  230 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n  230 (956)
                      +||+||.+||+||++|+++ ..|||||||||||||+|+|||||||.+|+|++|+..+..||.+||+|+.||+.|++.+..
T Consensus       258 ~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~  337 (607)
T KOG0240|consen  258 NINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWV  337 (607)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhh
Confidence            9999999999999999997 799999999999999999999999999999999999999999999999999998776554


Q ss_pred             cc
Q 002175          231 RD  232 (956)
Q Consensus       231 ~~  232 (956)
                      +.
T Consensus       338 n~  339 (607)
T KOG0240|consen  338 NL  339 (607)
T ss_pred             hh
Confidence            43

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=1.9e-54  Score=497.79  Aligned_cols=255  Identities=33%  Similarity=0.462  Sum_probs=222.9

Q ss_pred             CCCC-CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeC
Q 002175            1 MEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs-~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~   77 (956)
                      |.|+ ++.+|||||+|.+||..|+... ....|.|+|||+|||||+|+|||++...+...++.++.  .+|.|++++.|.
T Consensus       103 M~G~~~~~~GiiPraf~~LF~~I~~~~-~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~  181 (574)
T KOG4280|consen  103 MIGPDPELRGLIPRAFEHLFRHIDERK-EKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVE  181 (574)
T ss_pred             eeCCChhhCCchhHHHHHHHHHHHhcc-ccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecC
Confidence            7888 6789999999999999998653 34489999999999999999999998866667777663  467799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc-C--CCceeeeeeEEeeccCCCccccCCCcchhhHhH
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-I--TGENLYSKLSLVDLAGSEGLIAEDDSGERITDV  150 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~-~--~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa  150 (956)
                      |+++++.++..|..+|.+++|.    |||||+||||+|.+... .  ......|+|+|||||||||..++++.|.+++||
T Consensus       182 s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa  261 (574)
T KOG4280|consen  182 SAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEA  261 (574)
T ss_pred             CHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhh
Confidence            9999999999999999999987    99999999999999332 2  223567999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhcCCC-CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          151 LHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       151 ~~INkSL~aLg~VI~aLs~k~~-~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      .+||+||++||+||.+|.++.. ||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||+|||.|++.+.
T Consensus       262 ~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~  341 (574)
T KOG4280|consen  262 TNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPV  341 (574)
T ss_pred             cccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999776 999999999999999999999999999999999999999999999999999876543


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          230 NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA  272 (956)
Q Consensus       230 n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~  272 (956)
                      .+...                .+..+..|+.||..|+.++...
T Consensus       342 ined~----------------~~~~~~~lq~ei~~Lk~~l~~~  368 (574)
T KOG4280|consen  342 INEDP----------------KDALLRELQEEIERLKKELDPG  368 (574)
T ss_pred             ccCCc----------------chhhHHHHHHHHHHHHHhhccc
Confidence            33221                2455677777777777777654

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-51  Score=469.81  Aligned_cols=227  Identities=25%  Similarity=0.345  Sum_probs=205.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccC-------------------------------------------------------
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSD-------------------------------------------------------   25 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~-------------------------------------------------------   25 (956)
                      |+|++.++||+|||++.||+.|+..                                                       
T Consensus       132 m~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~  211 (809)
T KOG0247|consen  132 MTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIH  211 (809)
T ss_pred             eecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcc
Confidence            7899999999999999999998541                                                       


Q ss_pred             --------CCCCceEEEEEEEEEEEcCcccccCCcCCCCC-------ceEeecccccccceeEEEeCCHHHHHHHHHHHH
Q 002175           26 --------TTATARFNFAVTVFELYNEQLRELLPQTGNGL-------AKIRLQSLESSIELVQEKVDNPLEFSKVLKSAF   90 (956)
Q Consensus        26 --------~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~-------~~v~~~~~~~V~gLtev~V~S~eE~l~lL~~G~   90 (956)
                              .+.+..|+|+|||+|||||.|||||.+.+...       ......+..+|.|+++|+|.|.+|++++|+.|.
T Consensus       212 ~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGq  291 (809)
T KOG0247|consen  212 VIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQ  291 (809)
T ss_pred             hhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHH
Confidence                    13567899999999999999999998864221       123335557899999999999999999999999


Q ss_pred             hhccCcCCC----CCcceEEEEEEEEeeccC--CCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHHHHHHH
Q 002175           91 QSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL  164 (956)
Q Consensus        91 ~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~aLg~VI  164 (956)
                      ++|++++|.    |||||+||+|.|.+....  .....+|.|+|||||||||..++++.|.|++||++||.||++||+||
T Consensus       292 k~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Ci  371 (809)
T KOG0247|consen  292 KRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCI  371 (809)
T ss_pred             hhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHH
Confidence            999999998    999999999999998776  45678899999999999999999999999999999999999999999


Q ss_pred             HHhhcC-----CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccc
Q 002175          165 SSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS  227 (956)
Q Consensus       165 ~aLs~k-----~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~  227 (956)
                      .+|+.+     +.+|||||||||++++++|.|.++++||+||+|...+|+|+++.|+||+.+++|.+.
T Consensus       372 e~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~  439 (809)
T KOG0247|consen  372 DVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA  439 (809)
T ss_pred             HHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence            999974     379999999999999999999999999999999999999999999999999998764

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-50  Score=475.25  Aligned_cols=230  Identities=30%  Similarity=0.478  Sum_probs=210.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |.|+..+|||||+++.+||+.|...  .+..|.|.|||+|||||.|||||++.+..+ .++.+..  ..|.|++++.|.|
T Consensus       104 M~G~~~~PGii~la~~dif~~I~~~--~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L-~irED~~~gi~V~gL~e~~v~s  180 (675)
T KOG0242|consen  104 MSGSEDDPGIIPLAMKDIFEKIDKS--GEREFSVRVSYLEIYNERIRDLLNPDGGDL-RLREDSEGGIVVPGLTEETVSS  180 (675)
T ss_pred             EeccCCCCCeeehHHHHHHHHHHhc--CCceeEEEEEEEEEeccccccccCCCCCCc-eEeEcCCCCEEecCCeeecCCC
Confidence            8999999999999999999999864  388999999999999999999999977664 5666554  3456999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM  154 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN  154 (956)
                      ++++.++|..|..+|+++.|.    |||||+||+|.|.+....... ..|+|+|||||||||+.++++.|.|++||.+||
T Consensus       181 ~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~IN  259 (675)
T KOG0242|consen  181 REELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHIN  259 (675)
T ss_pred             HHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhhhhhhhccceeccccchhh
Confidence            999999999999999999998    999999999999998765443 779999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcC--CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          155 KSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       155 kSL~aLg~VI~aLs~k--~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      +||++||+||.+|.++  ..||||||||||||||++|||||+|+|||||+|...+|+||.+||+||++|++|++.+..+.
T Consensus       260 rSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~  339 (675)
T KOG0242|consen  260 RSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNV  339 (675)
T ss_pred             HHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccce
Confidence            9999999999999986  46899999999999999999999999999999999999999999999999999998776554


Q ss_pred             hh
Q 002175          233 TI  234 (956)
Q Consensus       233 ~i  234 (956)
                      ..
T Consensus       340 ~~  341 (675)
T KOG0242|consen  340 IL  341 (675)
T ss_pred             ec
Confidence            43

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=2.8e-49  Score=475.47  Aligned_cols=255  Identities=25%  Similarity=0.395  Sum_probs=217.8

Q ss_pred             CCCChHHHHHHHHHHhhccC----CCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCCH
Q 002175            6 HDRGLYARCFEELFDLSNSD----TTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDNP   79 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~----~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S~   79 (956)
                      .++|||||++++||..|...    .+....|.|+|||+|||||+|||||++.... ..++.+..  .+|.|++++.|.|+
T Consensus       198 ~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~-L~IRED~kgGv~VeGLTEv~V~S~  276 (1320)
T PLN03188        198 DQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKN-LQIREDVKSGVYVENLTEEYVKTM  276 (1320)
T ss_pred             ccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCC-ceEEEcCCCCeEeCCCeEEeCCCH
Confidence            57999999999999998642    2345689999999999999999999986554 34555443  46779999999999


Q ss_pred             HHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--C--CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           80 LEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--T--GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        80 eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~--~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      +|++.+|..|..+|+++.|.    |||||+||+|+|.+....  +  .....|+|+|||||||||..++++.|.+++|++
T Consensus       277 ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~  356 (1320)
T PLN03188        277 KDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAG  356 (1320)
T ss_pred             HHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHH
Confidence            99999999999999999987    999999999999876432  2  234679999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhc-----CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          152 HVMKSLSALGDVLSSLTS-----RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~-----k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      +||+||++||+||.+|+.     +..|||||+||||+||+|+|||||+|+|||||||...+++||++||+||+||+.|++
T Consensus       357 ~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKN  436 (1320)
T PLN03188        357 NINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKN  436 (1320)
T ss_pred             HHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999985     347999999999999999999999999999999999999999999999999999887


Q ss_pred             ccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          227 SLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE  271 (956)
Q Consensus       227 ~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~  271 (956)
                      .+..+....          ..+..+...|.+|+.|+..|+.....
T Consensus       437 kpvvNe~~~----------~~vn~LrelIr~Lk~EL~rLK~~~~~  471 (1320)
T PLN03188        437 KAVVNEVMQ----------DDVNFLREVIRQLRDELQRVKANGNN  471 (1320)
T ss_pred             cceeccchh----------hhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            765443321          12234566788888888888877543

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=2.3e-49  Score=437.88  Aligned_cols=222  Identities=30%  Similarity=0.493  Sum_probs=204.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+++++|||||++++||+.+... ..+..|.|+|||+|||||+|||||++...+ ..++.+..  .++.|++++.|.|
T Consensus       105 m~G~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~~~~-l~i~ed~~~~~~v~gl~~~~v~s  182 (338)
T cd01370         105 MLGTDSDPGLMVLTMKDLFDKIEER-KDDKEFEVSLSYLEIYNETIRDLLSPSSGP-LELREDPNQGIVVAGLTEHQPKS  182 (338)
T ss_pred             EcCCCCCCchHHHHHHHHHHhhhhc-ccCceEEEEEEEEEEECCEEEECCCCCCCC-ceEEEcCCCCEEeCCcEEEEeCC
Confidence            7899999999999999999999864 356899999999999999999999986443 45666553  4567999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC---CCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~---~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      ++|++.+|..|.++|+++.|.    |||||+||+|+|.+.+..   ......|+|+|||||||||..+++..|.+++|+.
T Consensus       183 ~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~  262 (338)
T cd01370         183 AEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGA  262 (338)
T ss_pred             HHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccc
Confidence            999999999999999999887    999999999999998765   4567789999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +||+||++|++||.+|++++   .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++||+|
T Consensus       263 ~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         263 NINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            99999999999999999977   89999999999999999999999999999999999999999999999999975

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=8e-49  Score=433.45  Aligned_cols=223  Identities=34%  Similarity=0.458  Sum_probs=198.5

Q ss_pred             CCCCC--------CCCChHHHHHHHHHHhhccC---CCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--cc
Q 002175            1 MEGSS--------HDRGLYARCFEELFDLSNSD---TTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ES   67 (956)
Q Consensus         1 M~Gs~--------~d~GIIPRal~dLF~~I~~~---~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~   67 (956)
                      |+|+.        .++|||||++++||..+...   ...+..|.|+|||+|||||+|||||.+..... .++.+..  .+
T Consensus        92 m~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l-~i~e~~~~~~~  170 (337)
T cd01373          92 MMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL-KIREDIKKGVY  170 (337)
T ss_pred             ecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc-eEEECCCCCEE
Confidence            67765        46899999999999998643   23457899999999999999999998865543 4555443  45


Q ss_pred             ccceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC--ceeeeeeEEeeccCCCccccCC
Q 002175           68 SIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYSKLSLVDLAGSEGLIAED  141 (956)
Q Consensus        68 V~gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~--~~~~SkLsfVDLAGSER~~kt~  141 (956)
                      +.|++++.|.|++|++.+|..|..+|++++|.    |||||+||+|+|.+.+...+  ....|+|+|||||||||..+++
T Consensus       171 v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~  250 (337)
T cd01373         171 VENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDG  250 (337)
T ss_pred             eCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccC
Confidence            67999999999999999999999999998886    99999999999998765443  3567999999999999999999


Q ss_pred             CcchhhHhHHHHhhhHHHHHHHHHHhhc----CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHH
Q 002175          142 DSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF  217 (956)
Q Consensus       142 s~G~rlkEa~~INkSL~aLg~VI~aLs~----k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrF  217 (956)
                      +.|.+++|+.+||+||++|++||.+|++    +..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+|
T Consensus       251 ~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~f  330 (337)
T cd01373         251 AEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKF  330 (337)
T ss_pred             CccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHH
Confidence            9999999999999999999999999985    458999999999999999999999999999999999999999999999


Q ss_pred             HHHhccc
Q 002175          218 SSRARST  224 (956)
Q Consensus       218 AsrAK~I  224 (956)
                      |.|||.|
T Consensus       331 a~rak~I  337 (337)
T cd01373         331 AQRAKLI  337 (337)
T ss_pred             HHHhhcC
Confidence            9999875

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=8.5e-49  Score=452.09  Aligned_cols=303  Identities=29%  Similarity=0.429  Sum_probs=249.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC-CceEeeccc--ccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG-LAKIRLQSL--ESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~-~~~v~~~~~--~~V~gLtev~V~   77 (956)
                      |+|..+.+|||||.++.||..|.....+...|.|.|||.|||||++||||+|+... ..+++.+..  .+|.||++..|+
T Consensus       111 mmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~  190 (1714)
T KOG0241|consen  111 MMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVT  190 (1714)
T ss_pred             eeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcc
Confidence            88999999999999999999999888899999999999999999999999996654 346666554  357799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--CC--ceeeeeeEEeeccCCCccccCCCcchhhHh
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLYSKLSLVDLAGSEGLIAEDDSGERITD  149 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~--~~~~SkLsfVDLAGSER~~kt~s~G~rlkE  149 (956)
                      |++|+-.++..|.++|+++.|+    |||||+||.|.|.|.-.+  ++  ...+|+|++||||||||..++++.|.+++|
T Consensus       191 S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlke  270 (1714)
T KOG0241|consen  191 SFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKE  270 (1714)
T ss_pred             cHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhh
Confidence            9999999999999999999998    899999999999987443  22  346899999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhc------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175          150 VLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS  223 (956)
Q Consensus       150 a~~INkSL~aLg~VI~aLs~------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~  223 (956)
                      +.+||+||++||.||.+|++      +.+.||||||-||+||+|.|||||+|+||+||||...+|+||++||+||.+||.
T Consensus       271 gsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkr  350 (1714)
T KOG0241|consen  271 GSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKR  350 (1714)
T ss_pred             cCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999986      246899999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhHHHHHHHHHHHHHHhhhHHHHHH
Q 002175          224 TVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ-CVLLYNEVQKAWKVSFTLQSDLKSENY  302 (956)
Q Consensus       224 I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q-~~~l~~Elq~~~k~~~eLE~eL~~e~~  302 (956)
                      |++...    +|.            +.....|++|++|++.|+.+|.+.... .-.+.+.++       ++++-+++...
T Consensus       351 IvN~av----vNe------------dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~-------esekli~ei~~  407 (1714)
T KOG0241|consen  351 IVNHAV----VNE------------DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLE-------ESEKLIKEITV  407 (1714)
T ss_pred             hhcccc----ccC------------CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHH-------HHHHHHHHHHh
Confidence            876433    221            134557788999999999998874322 112222222       33334444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          303 MLADKHKIEKEQNAQLRNQVAQLL  326 (956)
Q Consensus       303 ~Leek~k~~kee~~qLq~ql~~l~  326 (956)
                      ..++++...++.++.+++++..+-
T Consensus       408 twEEkl~ktE~in~erq~~L~~~g  431 (1714)
T KOG0241|consen  408 TWEEKLRKTEEINQERQAQLESMG  431 (1714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666655443

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=2.9e-48  Score=430.36  Aligned_cols=215  Identities=29%  Similarity=0.420  Sum_probs=196.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC-----CCceEeeccc--ccccceeE
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-----GLAKIRLQSL--ESSIELVQ   73 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~-----~~~~v~~~~~--~~V~gLte   73 (956)
                      |+|++.++|||||++++||+.+..       |.|+|||+|||||+|||||.+...     ....++.+..  .++.|+++
T Consensus       106 m~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~  178 (345)
T cd01368         106 MQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTE  178 (345)
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEE
Confidence            789999999999999999999864       999999999999999999988553     2345555543  35679999


Q ss_pred             EEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC--------CceeeeeeEEeeccCCCccccCC
Q 002175           74 EKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--------GENLYSKLSLVDLAGSEGLIAED  141 (956)
Q Consensus        74 v~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~--------~~~~~SkLsfVDLAGSER~~kt~  141 (956)
                      +.|.|++|++.+|..|.++|.++.|.    |||||+||+|+|.+.+...        .....|+|+|||||||||..+++
T Consensus       179 ~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~  258 (345)
T cd01368         179 VEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQ  258 (345)
T ss_pred             EEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccccccccccc
Confidence            99999999999999999999999886    9999999999999876542        34578999999999999999999


Q ss_pred             CcchhhHhHHHHhhhHHHHHHHHHHhhc------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHH
Q 002175          142 DSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL  215 (956)
Q Consensus       142 s~G~rlkEa~~INkSL~aLg~VI~aLs~------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTL  215 (956)
                      +.|.+++|+.+||+||++|++||.+|.+      +..|||||+||||+||+|+|+|||+|+||+||||+..+++||++||
T Consensus       259 ~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL  338 (345)
T cd01368         259 NTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVM  338 (345)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHH
Confidence            9999999999999999999999999987      4689999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 002175          216 NFSSRAR  222 (956)
Q Consensus       216 rFAsrAK  222 (956)
                      +||++|+
T Consensus       339 ~fa~~a~  345 (345)
T cd01368         339 KFSAIAQ  345 (345)
T ss_pred             HHHHhcC
Confidence            9999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=3e-47  Score=423.42  Aligned_cols=229  Identities=32%  Similarity=0.476  Sum_probs=207.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+..++|||||++++||+.+.........|.|+|||+|||||+|||||.+..  .....+..+..  .++.|++++.|
T Consensus       106 m~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v  185 (356)
T cd01365         106 MMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAV  185 (356)
T ss_pred             ecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEe
Confidence            789999999999999999999987655578999999999999999999999874  33345555443  35679999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----CCceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----~~~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      .|++|++.++..|.++|..+.|.    |||||+||+|+|.+.+..    ......|+|+|||||||||..+++..|.+++
T Consensus       186 ~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~  265 (356)
T cd01365         186 TSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLK  265 (356)
T ss_pred             CCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhH
Confidence            99999999999999999998886    999999999999987654    3456789999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhcC--------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175          149 DVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR  220 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~k--------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr  220 (956)
                      |+..||+||++|++||.+|..+        +.|||||+||||+||+++|||||+|+||+||+|...+++||++||+||++
T Consensus       266 E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~  345 (356)
T cd01365         266 EGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADR  345 (356)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999863        48999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccC
Q 002175          221 ARSTVLSLG  229 (956)
Q Consensus       221 AK~I~~~~~  229 (956)
                      +++|++.+.
T Consensus       346 ~~~i~~~~~  354 (356)
T cd01365         346 AKKIVNVAV  354 (356)
T ss_pred             HhhccCccc
Confidence            999887653

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=1.1e-46  Score=415.59  Aligned_cols=222  Identities=33%  Similarity=0.466  Sum_probs=202.2

Q ss_pred             CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+..   ++|||||++++||+.+...  ++..|.|+|||+|||||+|||||.+.......+..++.  .++.|++++.
T Consensus        99 m~G~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~  176 (333)
T cd01371          99 MEGVREPPELRGIIPNSFAHIFGHIAKA--ENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFV  176 (333)
T ss_pred             ecCCCCcccccchHHHHHHHHHHHHhhc--cCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEE
Confidence            788877   9999999999999999763  44889999999999999999999987655555665544  4567999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC---CCceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~---~~~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      |.|++|+..++..|.++|..+.|.    |||||+||+|+|.+.+..   ......|+|+|||||||||..+++..|.+++
T Consensus       177 v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~  256 (333)
T cd01371         177 VKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLK  256 (333)
T ss_pred             eCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhH
Confidence            999999999999999999988886    999999999999998764   3445689999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhcCCC-CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          149 DVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~k~~-~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      |+..||+||.+|++||.+|.+++. |||||+||||+||+++|||||+|+||+||+|...+++||++||+||+++|+|
T Consensus       257 E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I  333 (333)
T cd01371         257 EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI  333 (333)
T ss_pred             hHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            999999999999999999998775 9999999999999999999999999999999999999999999999999875

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=1.9e-46  Score=411.72  Aligned_cols=222  Identities=34%  Similarity=0.508  Sum_probs=204.2

Q ss_pred             CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+..   ++|||||++++||+.+... ..+.+|.|++||+|||||+|||||++..... .+..+..  .++.|++++.
T Consensus        94 m~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~~~~~~~~~v~gl~~~~  171 (325)
T cd01369          94 MEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNL-QVHEDKNRGVYVKGLTERF  171 (325)
T ss_pred             ecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCc-eEEEcCCCCEEEcCCEEEE
Confidence            678877   8999999999999999764 5567899999999999999999998865543 4444443  4567999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |.|.+|++.+|..|.++|+.+.|.    |||||+||+|+|.+.+...+....|+|+||||||||+..+++++|.+++|+.
T Consensus       172 v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~  251 (325)
T cd01369         172 VSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAK  251 (325)
T ss_pred             cCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccCCcchhHHHHH
Confidence            999999999999999999998886    8999999999999998888888999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      .||+||.+|++||.+|.+++ .|||||+|+||+||+|+|||||+|+||+||+|...+++||++||+||+|+|+|
T Consensus       252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i  325 (325)
T cd01369         252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI  325 (325)
T ss_pred             HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            99999999999999999987 99999999999999999999999999999999999999999999999999875

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=1.8e-46  Score=411.56  Aligned_cols=220  Identities=30%  Similarity=0.458  Sum_probs=201.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+.+++|||||++++||..+..  .++.+|.|+|||+|||||+|||||.+.... ..+..+..  .++.|++++.|.|
T Consensus        91 ~~G~~~~~Gli~r~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~-l~i~~~~~~~~~v~gl~~~~v~s  167 (321)
T cd01374          91 MSGDEQEPGIIPLAVRDIFQRIQD--TPDREFLLRVSYLEIYNEKIKDLLSPSPQE-LRIREDPNKGVVVAGLTEEIVTS  167 (321)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHhc--ccCceEEEEEEEEEEEcCEeEEccCCCCCC-ceEEECCCCCEEeCCceEEEeCC
Confidence            789999999999999999999975  346799999999999999999999987644 34555444  4567999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      ++|++.+|..|.++|+.+.|.    |||||+||+|+|.+.+...   +....|+|+|||||||||..+.+ .+.+++|+.
T Consensus       168 ~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~  246 (321)
T cd01374         168 PEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGS  246 (321)
T ss_pred             HHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccc
Confidence            999999999999999988876    8999999999999987655   56678999999999999999998 899999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCC--CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~--~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +||+||++|++||.+|++++  .|||||+||||+||+++|||||+|+||+||||...+++||++||+||+++++|
T Consensus       247 ~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i  321 (321)
T cd01374         247 FINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV  321 (321)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence            99999999999999999985  99999999999999999999999999999999999999999999999999874

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=2.2e-46  Score=415.46  Aligned_cols=220  Identities=31%  Similarity=0.403  Sum_probs=198.9

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeec----ccccccceeEEEeCCH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQ----SLESSIELVQEKVDNP   79 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~----~~~~V~gLtev~V~S~   79 (956)
                      +++|||||++++||+.+...   +..|.|+|||+|||||+|||||++..  .....+..+    ...++.|++++.|.|+
T Consensus       115 ~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~  191 (352)
T cd01364         115 PHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNA  191 (352)
T ss_pred             ccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCH
Confidence            45899999999999999753   67899999999999999999999864  444455555    2345679999999999


Q ss_pred             HHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           80 LEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        80 eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      +|++.+|..|.++|.++.|.    |||||+||+|+|.+.....   .....|+|+||||||||+..+.++.+.+++|+..
T Consensus       192 ~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~  271 (352)
T cd01364         192 NEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGN  271 (352)
T ss_pred             HHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhh
Confidence            99999999999999998886    8999999999999876532   2346799999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  228 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~  228 (956)
                      ||+||++|++||.+|..++.|||||+||||+||+|+|||||+|+||+||||...+++||++||+||+++++|++.|
T Consensus       272 iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P  347 (352)
T cd01364         272 INQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKP  347 (352)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987655

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=1.8e-46  Score=411.65  Aligned_cols=216  Identities=30%  Similarity=0.459  Sum_probs=197.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+..++|||||++++||+.++..   ...|.|++||+|||||+|||||++..... .+..+..  .++.|++++.|.|
T Consensus        98 m~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~~~~~~~~~v~gl~~~~v~s  173 (319)
T cd01376          98 MLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIREDKDGNILIVGLTSKPIKS  173 (319)
T ss_pred             EeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEEEcCCCCEEeeCCEEEEeCC
Confidence            7899999999999999999988642   36799999999999999999999865443 4444433  4577999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM  154 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN  154 (956)
                      ++|+..++..|.++|..+.|.    |||||+||+|+|.+.+.  .....|+|+|||||||||..+++..|.+++|+.+||
T Consensus       174 ~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN  251 (319)
T cd01376         174 MAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAIN  251 (319)
T ss_pred             HHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCCcccccCCccchhhhhhhhh
Confidence            999999999999999988876    99999999999998854  336789999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          155 KSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       155 kSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      +||++|++||.+|..+..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||+|+|
T Consensus       252 ~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~  319 (319)
T cd01376         252 SSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK  319 (319)
T ss_pred             hhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=1.5e-46  Score=412.94  Aligned_cols=214  Identities=30%  Similarity=0.422  Sum_probs=195.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+.+++|||||++++||+.++...   .+|.|++||+|||||+|||||++.  +...+..+..  .++.|++++.|.|
T Consensus       102 m~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~--~~l~i~~~~~~~~~v~~l~~~~v~s  176 (322)
T cd01367         102 MLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDR--KRLSVLEDGKGNVQIVGLTEKPVTS  176 (322)
T ss_pred             ecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCc--cceeEEEcCCCCEEeCCCEEEEeCC
Confidence            78999999999999999999997532   689999999999999999999883  3345555544  4567999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCC-CcchhhHhHHHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHV  153 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~-s~G~rlkEa~~I  153 (956)
                      ++|++.+|+.|..+|.++.|.    |||||+||+|+|.+.+.   ....|+|+|||||||||..+++ ..+.+++|+.+|
T Consensus       177 ~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~I  253 (322)
T cd01367         177 VDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEI  253 (322)
T ss_pred             HHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCCccccccccccchhhHHhHhHH
Confidence            999999999999999999886    99999999999998765   5678999999999999998876 468999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      |+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus       254 N~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k  322 (322)
T cd01367         254 NKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK  322 (322)
T ss_pred             hHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999985

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=4.4e-46  Score=409.20  Aligned_cols=226  Identities=40%  Similarity=0.576  Sum_probs=209.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+.+++||+||++++||+.+......+..|.|++||+|||||+|||||.+..  .....+..+..  .++.|++++.|
T Consensus        95 l~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v  174 (329)
T cd01366          95 MEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPV  174 (329)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEe
Confidence            789999999999999999999987655578999999999999999999999863  44455655553  35679999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      .|++|+..++..|.++|..+.|.    |||||+||+|+|.+.+...+....|+|+||||||||+..+.+..+.+++|+..
T Consensus       175 ~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~  254 (329)
T cd01366         175 SSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQA  254 (329)
T ss_pred             CCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhh
Confidence            99999999999999999988876    89999999999999988777888999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      ||+||++|++||.+|..+..|||||+|+||+||+++|||+++|+||+||||...+++||++||+||+++++|++
T Consensus       255 in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~  328 (329)
T cd01366         255 INKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL  328 (329)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999764

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=4.8e-46  Score=410.71  Aligned_cols=224  Identities=32%  Similarity=0.486  Sum_probs=201.9

Q ss_pred             CCCCC------CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccc
Q 002175            1 MEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIE   70 (956)
Q Consensus         1 M~Gs~------~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~g   70 (956)
                      |+|+.      .++|||||++++||+.+... ....+|.|+|||+|||||+|||||.+..  .....++.+..  ..+.|
T Consensus        91 m~G~~~~~~~~~~~Giipr~~~~LF~~~~~~-~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~g  169 (341)
T cd01372          91 MGTAFTASEDEEEVGIIPRAIQHIFKKIDEK-KDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVG  169 (341)
T ss_pred             ecCCCccccccccCChHHHHHHHHHHHHHhc-cccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCC
Confidence            56663      57999999999999999864 3457999999999999999999999864  44456666554  35679


Q ss_pred             eeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----------CCceeeeeeEEeeccCCCc
Q 002175           71 LVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TGENLYSKLSLVDLAGSEG  136 (956)
Q Consensus        71 Ltev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----------~~~~~~SkLsfVDLAGSER  136 (956)
                      ++++.|.|++|++.+|..|.++|....|.    |||||+||+|+|.+.+..          ......|+|+||||||||+
T Consensus       170 l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~  249 (341)
T cd01372         170 LTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSER  249 (341)
T ss_pred             CEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcc
Confidence            99999999999999999999999998886    999999999999998763          3446789999999999999


Q ss_pred             cccCCCcchhhHhHHHHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHH
Q 002175          137 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS  213 (956)
Q Consensus       137 ~~kt~s~G~rlkEa~~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLs  213 (956)
                      ..++++.|.+++|+..||+||++|++||.+|..++   .|||||+||||+||+|+||||++|+||+||||...+++||++
T Consensus       250 ~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~  329 (341)
T cd01372         250 LKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLN  329 (341)
T ss_pred             cccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHH
Confidence            99999999999999999999999999999999876   799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccc
Q 002175          214 SLNFSSRARSTV  225 (956)
Q Consensus       214 TLrFAsrAK~I~  225 (956)
                      ||+||+++|+|+
T Consensus       330 tL~~a~~~~~ik  341 (341)
T cd01372         330 TLKYANRARNIK  341 (341)
T ss_pred             HHHHHHHhccCC
Confidence            999999999874

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=4.5e-46  Score=410.95  Aligned_cols=220  Identities=35%  Similarity=0.419  Sum_probs=198.6

Q ss_pred             CCCCC---CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC-----CCCceEeeccc--ccccc
Q 002175            1 MEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAKIRLQSL--ESSIE   70 (956)
Q Consensus         1 M~Gs~---~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~-----~~~~~v~~~~~--~~V~g   70 (956)
                      |+|+.   .++|||||++++||+.++.  ..+..|.|++||+|||||+|||||.+..     .+...+..+..  .++.|
T Consensus        98 m~G~~~~~~~~Glipr~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~g  175 (334)
T cd01375          98 MTGGTESYKDRGLIPRALEQVFREVAM--RATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKG  175 (334)
T ss_pred             ccCCCCcccCCchHHHHHHHHHHHHHh--ccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCC
Confidence            77875   5789999999999999975  4567899999999999999999999874     23344554433  45779


Q ss_pred             eeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc--CCCceeeeeeEEeeccCCCccccCCCcc
Q 002175           71 LVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--ITGENLYSKLSLVDLAGSEGLIAEDDSG  144 (956)
Q Consensus        71 Ltev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~--~~~~~~~SkLsfVDLAGSER~~kt~s~G  144 (956)
                      ++++.|.+++|++.++..|..+|.++.|.    |||||+||+|+|.+.+.  .......|+|+|||||||||..+++..+
T Consensus       176 l~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~  255 (334)
T cd01375         176 LSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSG  255 (334)
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCch
Confidence            99999999999999999999999988876    99999999999999843  4445678999999999999999999999


Q ss_pred             hhhHhHHHHhhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          145 ERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       145 ~rlkEa~~INkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      ..++|+.+||+||.+|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus       256 ~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         256 QVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999988 999999999999999999999999999999999999999999999999974

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=2.1e-45  Score=403.56  Aligned_cols=224  Identities=36%  Similarity=0.512  Sum_probs=202.7

Q ss_pred             CCCC--CCCCChHHHHHHHHHHhhccCCCC-CceEEEEEEEEEEEcCcccccCCcCC---CCCceEeeccc---ccccce
Q 002175            1 MEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQSL---ESSIEL   71 (956)
Q Consensus         1 M~Gs--~~d~GIIPRal~dLF~~I~~~~~~-~~~fsVsVSylEIYNE~V~DLL~~~~---~~~~~v~~~~~---~~V~gL   71 (956)
                      |+|+  ..++|||||++++||..+...... ...|.|+|||+|||||+|||||.+..   .....+..+..   ..+.|+
T Consensus        92 m~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l  171 (335)
T PF00225_consen   92 MFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGL  171 (335)
T ss_dssp             HTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTS
T ss_pred             ccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeecc
Confidence            6888  899999999999999999864333 47899999999999999999999973   23456666554   467799


Q ss_pred             eEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCc----eeeeeeEEeeccCCCccccCCCc
Q 002175           72 VQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLAGSEGLIAEDDS  143 (956)
Q Consensus        72 tev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~----~~~SkLsfVDLAGSER~~kt~s~  143 (956)
                      +++.|.|.++++.+|..|.++|+...+.    |||||+||+|+|.+.+.....    ...|+|+||||||||+..+.+..
T Consensus       172 ~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~  251 (335)
T PF00225_consen  172 TEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGAS  251 (335)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSS
T ss_pred             ccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeeccccccccccccc
Confidence            9999999999999999999999998887    899999999999999876654    47899999999999999998864


Q ss_pred             -chhhHhHHHHhhhHHHHHHHHHHhhcC--CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175          144 -GERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR  220 (956)
Q Consensus       144 -G~rlkEa~~INkSL~aLg~VI~aLs~k--~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr  220 (956)
                       +.+++|+..||+||.+|++||.+|+++  ..+||||+||||+||+|+|||||+|+||+||+|...+++||++||+||++
T Consensus       252 ~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~  331 (335)
T PF00225_consen  252 DGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASR  331 (335)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHH
T ss_pred             ccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHH
Confidence             888999999999999999999999998  89999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 002175          221 ARST  224 (956)
Q Consensus       221 AK~I  224 (956)
                      +|+|
T Consensus       332 ~~~I  335 (335)
T PF00225_consen  332 AREI  335 (335)
T ss_dssp             HTTE
T ss_pred             HcCC
Confidence            9975

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=1.3e-43  Score=389.89  Aligned_cols=227  Identities=35%  Similarity=0.498  Sum_probs=206.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+.+++|||||++++||+.+... ..+..|.|+|||+|||||+|+|||.+.+.. ..+..+..  .++.|++++.|.|
T Consensus        97 l~G~~~~~Gli~~~~~~Lf~~~~~~-~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~~~~~~~~i~~l~~~~v~s  174 (335)
T smart00129       97 MSGTPDSPGIIPRALKDLFEKIDKL-EEGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIREDKKGGVYVKGLTEISVSS  174 (335)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHhhhc-ccCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEECCCCCEEecCCEEEEeCC
Confidence            7899999999999999999999753 346789999999999999999999887544 35555543  4667999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEee--ccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~--~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      ++|+..++..|.++|.+..|.    |||||+||+|+|.+.  +........|+|+||||||+|+..+.++.|.+++|+..
T Consensus       175 ~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~  254 (335)
T smart00129      175 FEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGN  254 (335)
T ss_pred             HHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhch
Confidence            999999999999999988876    899999999999977  44556678899999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhc--CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          153 VMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~--k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      ||+||.+|++||.+|++  +..+||||+|+||+||+++|+|+++|+||+||+|...+++||++||+||+++++|++.|.
T Consensus       255 in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~  333 (335)
T smart00129      255 INKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI  333 (335)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence            99999999999999998  567999999999999999999999999999999999999999999999999999887654

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=100.00  E-value=1.6e-44  Score=426.81  Aligned_cols=229  Identities=38%  Similarity=0.528  Sum_probs=213.6

Q ss_pred             CCC-CCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC-CCCceEeecc--cccccceeEEEe
Q 002175            1 MEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKIRLQS--LESSIELVQEKV   76 (956)
Q Consensus         1 M~G-s~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~-~~~~~v~~~~--~~~V~gLtev~V   76 (956)
                      |.| +++++|||||++++||..+..... ++.|.+.+||+|||||.|+|||.+.. .....+..+.  ...|++++.+.|
T Consensus       410 M~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V  488 (670)
T KOG0239|consen  410 MSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKV  488 (670)
T ss_pred             ccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEec
Confidence            889 799999999999999999998765 99999999999999999999998874 4444555544  346889999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      .+.+++..+++.|..+|+++.|.    |||||+||+|+|...+..++....+.|+|||||||||+++++..|.|++|+.+
T Consensus       489 ~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~  568 (670)
T KOG0239|consen  489 GSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQN  568 (670)
T ss_pred             CCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHH
Confidence            99999999999999999999998    99999999999999998899999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN  230 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n  230 (956)
                      ||+||++||.||.+|+.+..||||||||||+||+++|||++||+|+|+|||...++.||+++|+||.+++.+.+.+..
T Consensus       569 INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~  646 (670)
T KOG0239|consen  569 INKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR  646 (670)
T ss_pred             hchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998865433

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=3.3e-43  Score=385.14  Aligned_cols=222  Identities=37%  Similarity=0.537  Sum_probs=202.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcC-CCCCceEeecc--cccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT-GNGLAKIRLQS--LESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~-~~~~~~v~~~~--~~~V~gLtev~V~   77 (956)
                      |+|+.+++|||||++++||+.+.........|.|++||+|||||+|+|||.+. ......+..+.  ...+.|++++.|+
T Consensus        96 l~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~  175 (328)
T cd00106          96 MFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVG  175 (328)
T ss_pred             ecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeC
Confidence            78999999999999999999998654446789999999999999999999986 22334555554  3457799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCc--eeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~--~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |++|++.++..|.++|....|.    |||||+||+|+|.+.+.....  ...|+|+||||||||+..+.+..+.+++|+.
T Consensus       176 s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~  255 (328)
T cd00106         176 SAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAK  255 (328)
T ss_pred             CHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHH
Confidence            9999999999999999988876    899999999999999876655  7889999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCC--CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          152 HVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~--~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      .||+||.+|++||.+|..+.  .|||||+||||+||+|+|+|+++|+||+||+|...+++||++||+||+++|
T Consensus       256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~  328 (328)
T cd00106         256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK  328 (328)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            99999999999999999988  999999999999999999999999999999999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-42  Score=408.77  Aligned_cols=223  Identities=32%  Similarity=0.429  Sum_probs=197.8

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc-c--ccccceeEEEeCCHHHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS-L--ESSIELVQEKVDNPLEF   82 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~-~--~~V~gLtev~V~S~eE~   82 (956)
                      ++.|+|||++.++|..|..  .....|.|.|||+|||++.|+|||.|...... +..+. .  ..+.|++++.|.+..++
T Consensus        92 ~~~Gvipr~v~~~f~~i~~--~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~-i~~~e~~g~it~~glte~tv~~~~q~  168 (913)
T KOG0244|consen   92 DTVGVIPRAVSTLFTRIGK--TESFVFRITVSFVELYNEEVLDLLKPSRLKAN-IKLREPKGEITIRGLTEKTVRMKLQL  168 (913)
T ss_pred             ccCCcCcchHHHHHHHHHh--hhccceeeeeeeeeccchhhhhhcChhhhhhc-eeccccCCceEEEeehHHHHHHHHHH
Confidence            3359999999999999986  33488999999999999999999996444332 33322 2  35679999999999999


Q ss_pred             HHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc-CCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhH
Q 002175           83 SKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL  157 (956)
Q Consensus        83 l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~-~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL  157 (956)
                      .+.|..|...|++++|.    |||||+|||+.+.+.-. ......++||+|||||||||.++++++|.+++|+.+||.+|
T Consensus       169 ~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gL  248 (913)
T KOG0244|consen  169 LSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGL  248 (913)
T ss_pred             HHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHH
Confidence            99999999999999997    99999999999998543 34445679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCC--CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCcc
Q 002175          158 SALGDVLSSLTSRKD--IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNR  231 (956)
Q Consensus       158 ~aLg~VI~aLs~k~~--~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~  231 (956)
                      ++||+||.+|...+.  |||||+||||+||+|+||||+.|+||+||||...++.||++||+||.||++|++++..+
T Consensus       249 L~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN  324 (913)
T KOG0244|consen  249 LALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVN  324 (913)
T ss_pred             HHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccc
Confidence            999999999998654  99999999999999999999999999999999999999999999999999998876544

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=3.1e-39  Score=378.48  Aligned_cols=230  Identities=31%  Similarity=0.486  Sum_probs=208.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |.|+.+++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..+..+..  ..+.+++++.|.+
T Consensus       107 ~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~~~v~v~~l~~~~~~s  184 (568)
T COG5059         107 MSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSLLGVKVAGLTEKHVSS  184 (568)
T ss_pred             eecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCCCceEeecceEEecCC
Confidence            678899999999999999999986433 6789999999999999999999986654 23333333  4456999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM  154 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN  154 (956)
                      .+|++.+|..|..+|+++.|.    |||||+||++++.+.+...+....++|+||||||||++..++..+.+++|+..||
T Consensus       185 ~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN  264 (568)
T COG5059         185 KEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASIN  264 (568)
T ss_pred             hHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhH
Confidence            999999999999999999987    8999999999999998777766668999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhc--CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          155 KSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       155 kSL~aLg~VI~aLs~--k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      +||.+||+||.+|..  +..|||||+|||||+|+++|||+|+|+|||||+|...++++|.+||+||.+|+.|.+.+..+.
T Consensus       265 ~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~  344 (568)
T COG5059         265 KSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS  344 (568)
T ss_pred             hhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence            999999999999997  778999999999999999999999999999999999999999999999999999988766653

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-39  Score=364.72  Aligned_cols=217  Identities=25%  Similarity=0.354  Sum_probs=193.0

Q ss_pred             CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCCHHHHHH
Q 002175            7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDNPLEFSK   84 (956)
Q Consensus         7 d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S~eE~l~   84 (956)
                      ..||+..+.+|+|..+....-....+.|+|||||||+.+|||||++  +....+..+..  ..|+||.+..|.+.+|+++
T Consensus       321 s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~--k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~  398 (676)
T KOG0246|consen  321 SKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND--KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLE  398 (676)
T ss_pred             cccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc--ccceEEeecCCceEEEeeceeeeccCHHHHHH
Confidence            3599999999999999764445678999999999999999999988  33344555554  4678999999999999999


Q ss_pred             HHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCC-cchhhHhHHHHhhhHHH
Q 002175           85 VLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDD-SGERITDVLHVMKSLSA  159 (956)
Q Consensus        85 lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s-~G~rlkEa~~INkSL~a  159 (956)
                      +|..|..-|+++.|.    |||||+||+|.+...-   ....+++++||||||+||-.++.. ..++..||..||+||++
T Consensus       399 lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLA  475 (676)
T KOG0246|consen  399 LIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLA  475 (676)
T ss_pred             HHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHH
Confidence            999999999998886    9999999999997753   256789999999999999988765 44667799999999999


Q ss_pred             HHHHHHHhhcCCCCcCCCCCchhhhhccccCC-CCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175          160 LGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  228 (956)
Q Consensus       160 Lg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgG-NSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~  228 (956)
                      |..||.+|..++.|+|||.||||.+|+|+|=| |++||||+||||....++.||+||+||.|+|+..+..
T Consensus       476 LKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~  545 (676)
T KOG0246|consen  476 LKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG  545 (676)
T ss_pred             HHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999988 9999999999999999999999999999999976543

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=99.97  E-value=1.9e-31  Score=272.05  Aligned_cols=122  Identities=37%  Similarity=0.541  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175           82 FSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM  154 (956)
Q Consensus        82 ~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN  154 (956)
                      ++.++..|..+|.++.|.    |||||+||+|+|.+.+...   +....|+|+||||||||+..+++..+.+++|+..||
T Consensus        58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in  137 (186)
T cd01363          58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN  137 (186)
T ss_pred             HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHh
Confidence            788999999999888876    9999999999999987655   556789999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCC
Q 002175          155 KSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICP  203 (956)
Q Consensus       155 kSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSP  203 (956)
                      +||++|++||.+|.+++.+||||+||||+||+|+|||||+|+||+||||
T Consensus       138 ~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP  186 (186)
T cd01363         138 KSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP  186 (186)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence            9999999999999999999999999999999999999999999999998

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=99.93  E-value=8e-29  Score=293.85  Aligned_cols=595  Identities=32%  Similarity=0.310  Sum_probs=402.9

Q ss_pred             CCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecccccccceeEEEeCCHHH
Q 002175            2 EGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLE   81 (956)
Q Consensus         2 ~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~~~V~gLtev~V~S~eE   81 (956)
                      +++....|++-+++..++..-....  +..      .++.|++.+.|++.........+...-......+..........
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~  140 (670)
T KOG0239|consen   69 EGSNQPGGLLARLFKELIDLANSDK--TSN------VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSI  140 (670)
T ss_pred             hhhcCcchhHHHhhhhcccccccCC--Cch------hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccH
Confidence            4556667888888777777654322  211      77889999999997755544333333334444566666666677


Q ss_pred             HHHHHHHHHhhccCcCCCCCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHHHH
Q 002175           82 FSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALG  161 (956)
Q Consensus        82 ~l~lL~~G~~~R~~asT~SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~aLg  161 (956)
                      +..+......++......++.               ...   ....++|+++.+......--+....+...+-.+.....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~  202 (670)
T KOG0239|consen  141 FVSLLELAQENRGLYLDLSKV---------------TPE---NSLSLLDLALKESLKLESDLGDLVTELEHVTNSISELE  202 (670)
T ss_pred             HHHHHHHHhhhcccccccccc---------------chh---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            777776666555433332222               011   11115666665543322211111111111111111111


Q ss_pred             HHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccchhhhhhhhh
Q 002175          162 DVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIA  241 (956)
Q Consensus       162 ~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~~i~k~k~~~  241 (956)
                      ..+..           ....++.|.+.++                         .|+...+.++.               
T Consensus       203 ~~l~~-----------~~~~~~~l~~~~~-------------------------~~~~~~~~~~~---------------  231 (670)
T KOG0239|consen  203 SVLKS-----------AQEERRVLADSLG-------------------------NYADLRRNIKP---------------  231 (670)
T ss_pred             HHhhh-----------hHHHHHHHHHHhh-------------------------hhhhHHHhhhh---------------
Confidence            11111           3334444444444                         23333333221               


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          242 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ  321 (956)
Q Consensus       242 ~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~q  321 (956)
                        ..........+|..|+.++..|+..+...+.++..+..+++..++....+..++...+.++.+.+ ..++++.+|.++
T Consensus       232 --l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~  308 (670)
T KOG0239|consen  232 --LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNE  308 (670)
T ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence              11111223344888999999999999999998888888888888877777666666666665555 444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHH
Q 002175          322 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEE  401 (956)
Q Consensus       322 l~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEE  401 (956)
                      +.++..-....-..-.....+....+..+...                  .+........+.......-..-.-.+....
T Consensus       309 i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p  370 (670)
T KOG0239|consen  309 ILELKGNIRVFCRVRPLLPSEKQRLQSKVIDT------------------EEQGEVQVDSPDKGDKLEPQSFKFDKVFGP  370 (670)
T ss_pred             HHHhhcCceEEEEecCCCcccccccccccccc------------------CCcceeEeecCCCCCCCccccceeeeecCC
Confidence            44332211100000000000000000000000                  000000000000000000001223455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhc------cCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCccCCCCcccccC
Q 002175          402 LKKRDALIERLHEENEKLFDRLTEKA------SSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKT  475 (956)
Q Consensus       402 Lkkree~LErL~eE~ekL~qrL~eK~------Ssgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~~~~~p~~~~~~~~  475 (956)
                      .+.+++-.++++...+...+-...++      |+|++.+|..|                   .+..| ++.|.+  .++.
T Consensus       371 ~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~-------------------~~~~~-Giipra--l~~l  428 (670)
T KOG0239|consen  371 LASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP-------------------TPEDP-GIIPRA--LEKL  428 (670)
T ss_pred             cccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC-------------------CcccC-CccHHH--HHHH
Confidence            77888888888899999988888774      56665555554                   11222 676766  5777


Q ss_pred             CCeEEEeccCccccccCCchhhHHHhhhCCCCcc-ccchhhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHH
Q 002175          476 EGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFI  554 (956)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (956)
                      -+.+..+++|-...+++|.+||.+.++.||.|+. |.+.++|.+++|+.+|++.+++|+.|..+||.+|.++.+..+++.
T Consensus       429 F~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~  508 (670)
T KOG0239|consen  429 FRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVA  508 (670)
T ss_pred             HHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccccc
Confidence            8888888999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HhcCccchhhhhhhhhhhhHHHHHhhhcCccccccccCcchhhhhccCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 002175          555 RKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINL  634 (956)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (956)
                      +.+.|.+.+++|+|.+|+|.|+       ++.+.+.+.|+.+|.+.|+++|      .+++|+++.++.+.|..++.++.
T Consensus       509 ~T~~Ne~SSRSH~v~~v~v~g~-------~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~  575 (670)
T KOG0239|consen  509 STASNERSSRSHLVFRVRIRGI-------NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSA  575 (670)
T ss_pred             ccccchhhhccceEEEEEEecc-------ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhh
Confidence            9999999999999999999999       9999999999999999998887      67788999999999999999999


Q ss_pred             ccccccchhhhhhhhccccccccccccccchhhhhHHHHhhhhcchhhhhhhhccCChhhhHHHHHHHHhhccccccccc
Q 002175          635 KPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTG  714 (956)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (956)
                      .....+.+.+  .+.++...++-..||.+..|. .+....-|+++|+..++++.|+|.+++++++|+|....+.+...|+
T Consensus       576 LgdVi~AL~~--k~~HiPyRNSKLT~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~  652 (670)
T KOG0239|consen  576 LGDVISALAS--KRSHIPYRNSKLTQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTS  652 (670)
T ss_pred             hHHHHHHHhh--cCCCCcccccchHHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccccccc
Confidence            9988888877  444555799999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccchhhhHHhh
Q 002175          715 DDASGGTTGQLELLSTAI  732 (956)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~  732 (956)
                      ++.+++..|+++..++|+
T Consensus       653 ~~~~~~~~~~~~~~~~~~  670 (670)
T KOG0239|consen  653 DDVSLKRFGQLEKLSTAI  670 (670)
T ss_pred             chhhhhhhhhhhhhhhcC
Confidence            999999999999999885

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=97.45  E-value=0.015  Score=62.75  Aligned_cols=50  Identities=24%  Similarity=0.452  Sum_probs=33.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 002175          390 DSSAVSKKLEEELKKRDALI---ERLHEENEKLFDRLTEKASSVSSPQLSSPL  439 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~L---ErL~eE~ekL~qrL~eK~Ssgsspq~~Sp~  439 (956)
                      ...+..-.|+-||..++..+   ++|..|.+.|+++|.-+.--..-|...-|+
T Consensus       144 qAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Ps  196 (333)
T KOG1853|consen  144 QAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPS  196 (333)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcc
Confidence            34455556777777777665   788899999999998774333345544443

>PRK11637 AmiB activator; Provisional

Probab=97.25  E-value=0.12  Score=60.39  Aligned_cols=9  Identities=44%  Similarity=0.165  Sum_probs=4.8

Q ss_pred             ccccccCcc
Q 002175          586 LQSIMVSPV  594 (956)
Q Consensus       586 ~~~~~~~~~  594 (956)
                      +++|.|.+=
T Consensus       378 ~~~~~v~~G  386 (428)
T PRK11637        378 NQSALVSVG  386 (428)
T ss_pred             CCcCCCCCc
Confidence            455555543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.79  E-value=0.037  Score=68.32  Aligned_cols=116  Identities=20%  Similarity=0.245  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccc
Q 002175          307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG  386 (956)
Q Consensus       307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~e  386 (956)
                      ....++.++++|+.++..+.+..+.-+..++..++++.+.+.....+|.||.+.++......-....+.+....  ...+
T Consensus       461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~--~r~e  538 (697)
T PF09726_consen  461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQA--TRQE  538 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh--ccch
Confidence            34556667788888888888888888888888888888888888888888887765432210011111110001  0112


Q ss_pred             cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          387 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT  424 (956)
Q Consensus       387 e~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~  424 (956)
                      .++......+.|+.|+++++.++....++...+..++.
T Consensus       539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23345556677777777777777777777777776663

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=96.73  E-value=0.23  Score=57.86  Aligned_cols=8  Identities=25%  Similarity=0.165  Sum_probs=3.8

Q ss_pred             CccCCCCc
Q 002175          463 VDVAPLPL  470 (956)
Q Consensus       463 ~~~~p~~~  470 (956)
                      .+.||.|+
T Consensus       304 ~g~~~~Pv  311 (428)
T PRK11637        304 RGQAFWPV  311 (428)
T ss_pred             CCCCccCC
Confidence            34455554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.67  E-value=0.29  Score=60.71  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 002175          400 EELKKRDALIERLHEENEKLFDRLTEKASSVSSPQ  434 (956)
Q Consensus       400 EELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq  434 (956)
                      .+++..+.++.....|-..|.++|.+-  .+-||.
T Consensus       629 rq~ei~~~~~~~~d~ei~~lk~ki~~~--~av~p~  661 (697)
T PF09726_consen  629 RQLEIAQGQLRKKDKEIEELKAKIAQL--LAVMPS  661 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCc
Confidence            344444445555666777777777765  455555

; GO: 0016021 integral to membrane

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.48  E-value=0.27  Score=63.09  Aligned_cols=33  Identities=33%  Similarity=0.318  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175          393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~e  425 (956)
                      ....+++.++..+.+.+..+..+...+..++.+
T Consensus       462 ~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~  494 (1164)
T TIGR02169       462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAE  494 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.47  E-value=0.35  Score=52.80  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE  329 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e  329 (956)
                      ....++..+...+..++.++.....+...+..++++..+.....+..+.  ..--+.....+..+...++.+...+....
T Consensus        35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--~v~~~~e~~aL~~E~~~ak~r~~~le~el  112 (239)
T COG1579          35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS--AVKDERELRALNIEIQIAKERINSLEDEL  112 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444454444444444443331  11112223334444555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      .++...+...+.++..++..+..++..+.+...
T Consensus       113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~  145 (239)
T COG1579         113 AELMEEIEKLEKEIEDLKERLERLEKNLAEAEA  145 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555566666666655555544444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.40  E-value=0.32  Score=62.39  Aligned_cols=10  Identities=20%  Similarity=0.152  Sum_probs=5.2

Q ss_pred             CHHHHHHHHH
Q 002175           78 NPLEFSKVLK   87 (956)
Q Consensus        78 S~eE~l~lL~   87 (956)
                      +..++..++.
T Consensus       118 ~~~~~~~~l~  127 (1164)
T TIGR02169       118 RLSEIHDFLA  127 (1164)
T ss_pred             cHHHHHHHHH
Confidence            3455555553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.38  E-value=1.2  Score=52.05  Aligned_cols=19  Identities=11%  Similarity=0.107  Sum_probs=14.0

Q ss_pred             ccCCCCCCCCCccCCCCcc
Q 002175          453 RNDNNNKGLPVDVAPLPLS  471 (956)
Q Consensus       453 r~~~~~~~~~~~~~p~~~~  471 (956)
                      -+.++..+++.+-+|.|++
T Consensus       286 i~~t~~~~~~~G~l~~PV~  304 (420)
T COG4942         286 ISSTGGFGALRGQLAWPVT  304 (420)
T ss_pred             cccccccccccCCcCCCCC
Confidence            4455777888888888875

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.30  E-value=0.4  Score=61.30  Aligned_cols=10  Identities=20%  Similarity=0.650  Sum_probs=5.9

Q ss_pred             HHHhhhCCCC
Q 002175          498 LTAALNDFNP  507 (956)
Q Consensus       498 ~~~~~~~~~~  507 (956)
                      |-+|+..|.|
T Consensus       977 lg~aiee~~~  986 (1179)
T TIGR02168       977 LENKIKELGP  986 (1179)
T ss_pred             HHHHHHHcCC
Confidence            4446666665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.29  E-value=1.1  Score=48.95  Aligned_cols=152  Identities=14%  Similarity=0.156  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 002175          247 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE-----KEQNAQLRNQ  321 (956)
Q Consensus       247 el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~-----kee~~qLq~q  321 (956)
                      +++.+...+...+..+..++.++...+.....+..+++...+....++.++...+..+..-...+     ..+...|...
T Consensus        18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E   97 (239)
T COG1579          18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE   97 (239)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            33444444445555555555555555554444445555554555555555554444333322222     2244445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHH
Q 002175          322 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEE  401 (956)
Q Consensus       322 l~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEE  401 (956)
                      +....+....+..++.+...+++.+++++..++.++.....                           ........++++
T Consensus        98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~---------------------------~~~e~~~~~e~e  150 (239)
T COG1579          98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK---------------------------NLAEAEARLEEE  150 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence            55555555555555555555555555555555555543333                           223334455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 002175          402 LKKRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       402 Lkkree~LErL~eE~ekL~qrL~e  425 (956)
                      ++..++..+.+..+.+.|...|+.
T Consensus       151 ~~~i~e~~~~~~~~~~~L~~~l~~  174 (239)
T COG1579         151 VAEIREEGQELSSKREELKEKLDP  174 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCH
Confidence            666666665555555555444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.13  E-value=0.18  Score=64.16  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=22.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENE-------KLFDRLTEK  426 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~e-------kL~qrL~eK  426 (956)
                      ++......+..++++....+..++.+.+       ++++++.+.
T Consensus       546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~  589 (1293)
T KOG0996|consen  546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA  589 (1293)
T ss_pred             HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555544       889999988

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.84  E-value=1.1  Score=57.58  Aligned_cols=9  Identities=33%  Similarity=0.645  Sum_probs=4.5

Q ss_pred             ccccccccc
Q 002175          628 QGFKINLKP  636 (956)
Q Consensus       628 ~~~~~~~~~  636 (956)
                      .||.|...|
T Consensus      1071 ~~~~~~~~~ 1079 (1179)
T TIGR02168      1071 AGIEIFAQP 1079 (1179)
T ss_pred             cCceEEEeC
Confidence            455555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.70  E-value=3.1  Score=50.37  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          395 SKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       395 ~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ...+.++|...+++++....+..-|..+|.+-
T Consensus       285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~  316 (546)
T PF07888_consen  285 NEALKEQLRSAQEQLQASQQEAELLRKELSDA  316 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777777777777777777777665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.68  E-value=3.2  Score=46.08  Aligned_cols=119  Identities=15%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV  322 (956)
Q Consensus       243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql  322 (956)
                      .+..++.+++..+..|+.|..+-..+|+.+......-...++........    +..++-.+.+.-..+...++.+...+
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~----LkREnq~l~e~c~~lek~rqKlshdl   90 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA----LKRENQSLMESCENLEKTRQKLSHDL   90 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence            45567777777888888877776666666544322222222221111222    22223333333333444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175          323 AQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE  365 (956)
Q Consensus       323 ~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~  365 (956)
                      ........-+..++......|+.|+.+++.++.+++.......
T Consensus        91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   91 QVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5555555567788888888999999999999999987666544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.62  E-value=0.8  Score=54.67  Aligned_cols=18  Identities=28%  Similarity=0.274  Sum_probs=11.2

Q ss_pred             hhhhccchhhHHHHHHHH
Q 002175          513 LAVISDGANKLLMLVLAA  530 (956)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~  530 (956)
                      ....|-|-=+.+.|.+|-
T Consensus       466 ~~~lS~Ge~~r~~la~~l  483 (562)
T PHA02562        466 YASFSQGEKARIDLALLF  483 (562)
T ss_pred             hhhcChhHHHHHHHHHHH
Confidence            355677777766666543

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.62  E-value=4.2  Score=47.09  Aligned_cols=29  Identities=17%  Similarity=0.407  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          398 LEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       398 LeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .++.+.+++.+++++.-+...|.+++.+-
T Consensus       250 r~e~I~~re~~lq~lEt~q~~leqeva~l  278 (499)
T COG4372         250 RAEQIRERERQLQRLETAQARLEQEVAQL  278 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666665544

>PRK09039 hypothetical protein; Validated

Probab=95.56  E-value=0.99  Score=51.67  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=10.6

Q ss_pred             EeeCCCCCCHHHhHHHHHHH
Q 002175          199 VNICPNAANMSETLSSLNFS  218 (956)
Q Consensus       199 v~VSPs~~~~eETLsTLrFA  218 (956)
                      +++.|   .|=+.++||-..
T Consensus        13 ~~~wp---g~vd~~~~ll~~   29 (343)
T PRK09039         13 VDYWP---GFVDALSTLLLV   29 (343)
T ss_pred             CCCCc---hHHHHHHHHHHH
Confidence            45677   466677776544

>PRK09039 hypothetical protein; Validated

Probab=95.51  E-value=1.6  Score=49.94  Aligned_cols=16  Identities=31%  Similarity=0.472  Sum_probs=9.3

Q ss_pred             ccCCchhhH----HHhhhCC
Q 002175          490 KTTPAGEYL----TAALNDF  505 (956)
Q Consensus       490 ~~~~~~~~~----~~~~~~~  505 (956)
                      ..||.|...    ...|.+.
T Consensus       234 ~L~~~~~~~L~~ia~~l~~~  253 (343)
T PRK09039        234 ELNPEGQAEIAKLAAALIEL  253 (343)
T ss_pred             ccCHHHHHHHHHHHHHHHHh
Confidence            457888643    3455554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.48  E-value=2.7  Score=44.56  Aligned_cols=52  Identities=10%  Similarity=0.104  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          306 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR  357 (956)
Q Consensus       306 ek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL  357 (956)
                      ...+..++++..|-..+..+......+.......++.+..|..+...|+.++
T Consensus        88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            3333344444445555555554444455555555555555555555555554

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.40  E-value=1.3  Score=56.73  Aligned_cols=61  Identities=18%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175          305 ADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE  365 (956)
Q Consensus       305 eek~k~~kee~~qLq~ql~~l~~~e-eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~  365 (956)
                      +..++..+.....+.+++..+.... +++..++.+.+.+++.|+.+++.++.++..+..+..
T Consensus       364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~  425 (1074)
T KOG0250|consen  364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN  425 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555555555555444 445566666666666666666666666655544433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.39  E-value=2  Score=53.75  Aligned_cols=81  Identities=19%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             hccchhh--------HHHHHHHHHHHhccchhHH----HHHHHhhhHHHHHH----------hcCccchhhhhhhhhhhh
Q 002175          516 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIR----------KMEPTRVMDTMLVSRVRI  573 (956)
Q Consensus       516 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  573 (956)
                      ++||.|-        ++|=.++-+|-.|++--|-    =..-+-+.+.-|+|          ----.+++|-|++-+   
T Consensus       645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~---  721 (980)
T KOG0980|consen  645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ---  721 (980)
T ss_pred             cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence            5666665        6666666666555443332    22223333333322          123456777775543   


Q ss_pred             HHHHHhhhcCccc----cccccCcchhhhhc
Q 002175          574 LYIRSLLARSPEL----QSIMVSPVECFLEK  600 (956)
Q Consensus       574 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~  600 (956)
                       ||--+..-.|||    -+|++-|++.-|++
T Consensus       722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~  751 (980)
T KOG0980|consen  722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI  751 (980)
T ss_pred             -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence             677777777777    25666666665554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.30  E-value=4.9  Score=42.73  Aligned_cols=110  Identities=23%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK------SENYMLADKHKIEKEQNAQLRNQVAQ  324 (956)
Q Consensus       251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~------~e~~~Leek~k~~kee~~qLq~ql~~  324 (956)
                      +..--.+|..|+..|+..+....+.+..+..++....+.+..+++-+.      ++...+....+..++++..|..+..+
T Consensus        13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq   92 (193)
T PF14662_consen   13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQ   92 (193)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334455555555555555544444444444433333333332221      11112222223334444455555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el  360 (956)
                      +....+.+-.++..++.+...+..+...++.+..++
T Consensus        93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL  128 (193)
T PF14662_consen   93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL  128 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence            444444444444444444444444444444444433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.16  E-value=1.6  Score=55.89  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175          309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS  364 (956)
Q Consensus       309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~  364 (956)
                      ....++...++..+........+++.++.+.+..+..++..+..++.++....+..
T Consensus       333 ~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  333 DAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666666666666666777777777777777777777777777666654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.08  E-value=1.6  Score=54.70  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH
Q 002175          253 KEIQDLKQEILGLRQALKEANDQCV  277 (956)
Q Consensus       253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~  277 (956)
                      .++++|...+.+|++.+-.+.+-..
T Consensus       368 ~qfkqlEqqN~rLKdalVrLRDlsA  392 (1243)
T KOG0971|consen  368 YQFKQLEQQNARLKDALVRLRDLSA  392 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcch
Confidence            3455566666666655555444333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.02  E-value=2  Score=53.82  Aligned_cols=15  Identities=33%  Similarity=0.536  Sum_probs=9.8

Q ss_pred             hhHHHhhhCCCCccccchh
Q 002175          496 EYLTAALNDFNPEQYDNLA  514 (956)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~  514 (956)
                      +||||    |=||+|-..-
T Consensus       599 ~~l~A----FmPdsFlrrG  613 (1243)
T KOG0971|consen  599 SLLTA----FMPDSFLRRG  613 (1243)
T ss_pred             HHHHH----hCcHhhccCC
Confidence            45555    7888886543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.01  E-value=2.1  Score=56.18  Aligned_cols=20  Identities=20%  Similarity=0.084  Sum_probs=11.8

Q ss_pred             ceeEEEeCCHHHHHHHHHHH
Q 002175           70 ELVQEKVDNPLEFSKVLKSA   89 (956)
Q Consensus        70 gLtev~V~S~eE~l~lL~~G   89 (956)
                      .+..+.|.+...+..++..-
T Consensus       542 ~l~~vVV~~~~~a~~~i~~l  561 (1163)
T COG1196         542 RLQAVVVENEEVAKKAIEFL  561 (1163)
T ss_pred             ccCCeeeCChHHHHHHHHHH
Confidence            46667777755555554433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.83  E-value=9  Score=46.53  Aligned_cols=30  Identities=23%  Similarity=0.178  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      -++-|-.++.++-+.|....++|++||.-.
T Consensus       428 v~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  428 VAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333344445555566666677777776544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.83  E-value=5.4  Score=42.55  Aligned_cols=157  Identities=25%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002175          233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEK  312 (956)
Q Consensus       233 ~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~k  312 (956)
                      .|+..+.-..++++........+.++..|+..|..-|.........+...+....+....|.. ....-..+++..+.++
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~-~k~rl~~~ek~l~~Lk  106 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQN-LKARLKELEKELKDLK  106 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            344444445555555555556666666666666666655555544444443332222211111 1111122233333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcc
Q 002175          313 EQNAQLRNQVAQLLQLEQEQKM---------------QIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPA  377 (956)
Q Consensus       313 ee~~qLq~ql~~l~~~eeElk~---------------qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~  377 (956)
                      .+.+.|..+...+....+++..               +.--.+.++..+.+.++.-+.++.+.......           
T Consensus       107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl-----------  175 (201)
T PF13851_consen  107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL-----------  175 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence            4444444444443333333221               12223455555555555556666555544333           


Q ss_pred             ccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175          378 VSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE  410 (956)
Q Consensus       378 s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE  410 (956)
                               +......+..++++-+....+.|.
T Consensus       176 ---------dp~~~~~v~~~l~~~l~~KN~~I~  199 (201)
T PF13851_consen  176 ---------DPAALSQVSKKLEDVLDSKNQTIK  199 (201)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     111344555666666666666554

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=94.80  E-value=1.6  Score=54.13  Aligned_cols=64  Identities=22%  Similarity=0.192  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 002175          392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPV  463 (956)
Q Consensus       392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~~  463 (956)
                      +....-|.-.|..+++++.||++-.+.|..-++.-        ..+-+.-.++.+..+++-++-=+.+..++
T Consensus       521 ekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l--------L~dls~D~ar~Kp~~nLTKSLLniyEkql  584 (861)
T PF15254_consen  521 EKENQILGITLRQRDAEIERLRELTRTLQNSMAKL--------LSDLSVDSARCKPGNNLTKSLLNIYEKQL  584 (861)
T ss_pred             HhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccccccccCCcchhHHHHHHHHHHhh
Confidence            33444577778888888888888777776555544        12122234445666666555544444333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.78  E-value=1.3  Score=54.17  Aligned_cols=37  Identities=11%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+....-..-..++|+++.|...-.+-+.+..+|..-
T Consensus       488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l  524 (594)
T PF05667_consen  488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL  524 (594)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455566666666666666666666655544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.77  E-value=9.4  Score=43.34  Aligned_cols=102  Identities=20%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccc
Q 002175          308 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQR-DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG  386 (956)
Q Consensus       308 ~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~-e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~e  386 (956)
                      .+......+.|..++.++.....++...+... +..+..|+.++..|+.+........+.                 +..
T Consensus       101 e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~-----------------Lr~  163 (310)
T PF09755_consen  101 EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELER-----------------LRR  163 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHH
Confidence            33344455667777777777666666666543 333556666666665433221111111                 111


Q ss_pred             cccChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          387 DGMDSS-AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       387 e~~d~s-~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      +-.+.+ .+...-+.-+.++..++..|..|++.|..+|...
T Consensus       164 EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~  204 (310)
T PF09755_consen  164 EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP  204 (310)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            111111 1111122223444556677779999999998875

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.69  E-value=2.5  Score=55.54  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=11.0

Q ss_pred             hHHHHHHHhhhHHHHHHhcCc
Q 002175          539 EHEILAEIRDAVFAFIRKMEP  559 (956)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~  559 (956)
                      +++=|.+-+..+...|-+|.-
T Consensus       985 ~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196         985 QREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555543

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=94.67  E-value=4.3  Score=50.73  Aligned_cols=119  Identities=24%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHH
Q 002175          241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD----------LKSENYMLADKHKI  310 (956)
Q Consensus       241 ~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~e----------L~~e~~~Leek~k~  310 (956)
                      ..+.......+...|..|+.|+..++..+........-+........+....++.+          ++.++..+..-+..
T Consensus        22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse  101 (717)
T PF09730_consen   22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE  101 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            33333444455566666666666666666655444433333222222222222222          22223333333445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ++++|-.|++++..+.+-    +.+.+..+-+|..|++++..|..|++++..-
T Consensus       102 lEeENislQKqvs~Lk~s----QvefE~~Khei~rl~Ee~~~l~~qlee~~rL  150 (717)
T PF09730_consen  102 LEEENISLQKQVSVLKQS----QVEFEGLKHEIKRLEEEIELLNSQLEEAARL  150 (717)
T ss_pred             HHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777766543    3444566677788888888888887665543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.63  E-value=6  Score=43.57  Aligned_cols=8  Identities=25%  Similarity=0.497  Sum_probs=4.4

Q ss_pred             cccCCchh
Q 002175          489 IKTTPAGE  496 (956)
Q Consensus       489 ~~~~~~~~  496 (956)
                      |-.||+..
T Consensus       239 ~pltp~aR  246 (333)
T KOG1853|consen  239 VPLTPDAR  246 (333)
T ss_pred             CCCCchhh
Confidence            45566544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.62  E-value=4.1  Score=51.05  Aligned_cols=85  Identities=16%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHH
Q 002175          325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKK  404 (956)
Q Consensus       325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkk  404 (956)
                      +...+.+.+.+++..+.+++.++..++.++.+++.+....+.+...             .++...-.....+...+-|++
T Consensus       630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~-------------~~~s~~L~~~Q~~~I~~iL~~  696 (717)
T PF10168_consen  630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSP-------------KKKSIVLSESQKRTIKEILKQ  696 (717)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------cCCCccCCHHHHHHHHHHHHH
Confidence            4445556666777777777777777777777766544322211000             111112334445555566666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 002175          405 RDALIERLHEENEKLFDR  422 (956)
Q Consensus       405 ree~LErL~eE~ekL~qr  422 (956)
                      .-++|.++-.+-.++...
T Consensus       697 ~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  697 QGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666666666655555544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.61  E-value=1.9  Score=55.48  Aligned_cols=10  Identities=10%  Similarity=0.046  Sum_probs=6.6

Q ss_pred             EEEEEEEEee
Q 002175          105 LIIMIHIYYN  114 (956)
Q Consensus       105 ~IFtI~V~q~  114 (956)
                      |.++||+...
T Consensus       160 CsV~vhFq~i  169 (1293)
T KOG0996|consen  160 CSVEVHFQKI  169 (1293)
T ss_pred             eeEEEeeeee
Confidence            6677777654

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.60  E-value=5.6  Score=46.79  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002175          244 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK  285 (956)
Q Consensus       244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~  285 (956)
                      ..++...++.+|+.++.++..+..++.+.......+..++..
T Consensus        57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~   98 (420)
T COG4942          57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            344444555566666666666666555554444444333333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.57  E-value=2.9  Score=53.14  Aligned_cols=25  Identities=20%  Similarity=0.064  Sum_probs=16.7

Q ss_pred             eeEEEeCCHHHHHHHHHHHHhhccC
Q 002175           71 LVQEKVDNPLEFSKVLKSAFQSRGN   95 (956)
Q Consensus        71 Ltev~V~S~eE~l~lL~~G~~~R~~   95 (956)
                      +-.|.|.+..-.-.+|..|.-.|++
T Consensus       548 LynvVv~te~tgkqLLq~g~l~rRv  572 (1174)
T KOG0933|consen  548 LYNVVVDTEDTGKQLLQRGNLRRRV  572 (1174)
T ss_pred             ceeEEeechHHHHHHhhccccccee
Confidence            4556677777777777777666544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.54  E-value=7  Score=48.07  Aligned_cols=30  Identities=37%  Similarity=0.565  Sum_probs=18.5

Q ss_pred             ccchhhhccchhhHHHHHHHHHHHhccchhHHHHHHHhh
Q 002175          510 YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRD  548 (956)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (956)
                      |--+|+|=++.+.|.-.    |-..|+     +..||||
T Consensus       553 YK~La~lh~~c~~Li~~----v~~tG~-----~~rEird  582 (594)
T PF05667_consen  553 YKLLASLHENCSQLIET----VEETGT-----ISREIRD  582 (594)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHH
Confidence            66777788888885443    444453     4556665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.52  E-value=9.7  Score=42.34  Aligned_cols=31  Identities=29%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLF  420 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~  420 (956)
                      .+......++.++......++++..|++.|.
T Consensus       259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll  289 (312)
T PF00038_consen  259 EYQAEIAELEEELAELREEMARQLREYQELL  289 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            4455566677777777777776666666653

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.36  E-value=8.6  Score=41.04  Aligned_cols=105  Identities=11%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          253 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQ  332 (956)
Q Consensus       253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeEl  332 (956)
                      ..|..|+.++..++...............+..........++.+....+..+... ...+.....++.++..+......+
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~~L~~~k~rl~~~ek~l~~L  105 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQSLQNLKARLKELEKELKDL  105 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777665544433333333333333333333333333333333221 122223333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          333 KMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       333 k~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +-+.+..+..+..++.+...|...+.
T Consensus       106 k~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen  106 KWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555554443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.34  E-value=3.8  Score=56.02  Aligned_cols=17  Identities=29%  Similarity=0.389  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 002175          891 CAQRQIADARRMVEVLQ  907 (956)
Q Consensus       891 ~~~~~~~~~~~~~~~~~  907 (956)
                      ||.+++.||.+-.+.++
T Consensus      1622 ~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred             HHHHhhHHHHHHHHhhH
Confidence            56666666665554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.34  E-value=3.7  Score=53.24  Aligned_cols=32  Identities=38%  Similarity=0.510  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ++..+++.+++-....+++...|++++  +|..+
T Consensus       667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~  698 (1317)
T KOG0612|consen  667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDK  698 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence            577788999999999999999999988  54444

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=94.30  E-value=5.5  Score=46.47  Aligned_cols=65  Identities=22%  Similarity=0.255  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 002175          340 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH  413 (956)
Q Consensus       340 e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~  413 (956)
                      ...|+.|+.++.+|+.++...+++.....++..+...      ..+   +.-..++++|..++.++++....+.
T Consensus       252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~------~~r---een~rlQrkL~~e~erRealcr~ls  316 (552)
T KOG2129|consen  252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV------DHR---EENERLQRKLINELERREALCRMLS  316 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3457888888888888888777766553333211110      011   2345567788888887777665443

>PRK02224 chromosome segregation protein; Provisional

Probab=94.30  E-value=3.8  Score=51.92  Aligned_cols=8  Identities=0%  Similarity=-0.064  Sum_probs=4.6

Q ss_pred             eEEEEEEE
Q 002175           31 RFNFAVTV   38 (956)
Q Consensus        31 ~fsVsVSy   38 (956)
                      .+.|.+.|
T Consensus        67 ~~~v~~~f   74 (880)
T PRK02224         67 EAEIELWF   74 (880)
T ss_pred             cEEEEEEE
Confidence            45666665

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.16  E-value=7.2  Score=42.30  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          393 AVSKKLEEELKKRDALIERLHEENEKLFDRLT  424 (956)
Q Consensus       393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~  424 (956)
                      ....+|+.++..++..|......+..+...|+
T Consensus       197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666666666666655555554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.86  E-value=5  Score=54.94  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      +...++..+.+...+......++.++.++..
T Consensus       997 l~~~l~~~eek~~~l~k~~~kle~~l~~le~ 1027 (1930)
T KOG0161|consen  997 LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEV 1027 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444544444443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.83  E-value=16  Score=42.57  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHHHhhcC------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHH
Q 002175          155 KSLSALGDVLSSLTSR------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSS  219 (956)
Q Consensus       155 kSL~aLg~VI~aLs~k------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAs  219 (956)
                      .+...||-||..+.+.      +.+.        +||.   -..-.|.+|++|-..----.-||..|-..+
T Consensus         7 ~~vlvLgGVIA~~gD~ig~kvGkarL--------rlF~---LRPkqTAvlvtvltG~liSA~tLailf~~~   66 (499)
T COG4372           7 PFVLVLGGVIAYAGDTIGKKVGKARL--------RLFG---LRPKQTAVLVTVLTGMLISAATLAILFLLN   66 (499)
T ss_pred             HHHHHHHhHHHHHhhHHHhhhhHHHH--------hHhc---cCcccceeehhhhhcchhhHHHHHHHHHhh
Confidence            3567889999888762      1121        1110   113467777777554333445555554443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.78  E-value=4.1  Score=54.87  Aligned_cols=41  Identities=10%  Similarity=0.008  Sum_probs=27.1

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175          388 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS  428 (956)
Q Consensus       388 ~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~S  428 (956)
                      ..........++.++..++.++..+....+.+........+
T Consensus       444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~  484 (1486)
T PRK04863        444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK  484 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566667777777777777777777777666666533

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.77  E-value=7.3  Score=46.64  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      ..++..+......+...+...+..+..++.++..++..+.....
T Consensus       233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~  276 (562)
T PHA02562        233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK  276 (562)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.75  E-value=2.4  Score=51.25  Aligned_cols=15  Identities=27%  Similarity=0.445  Sum_probs=8.8

Q ss_pred             CCchhh---hhccccCCC
Q 002175          178 NSMLTK---VLADSLGES  192 (956)
Q Consensus       178 dSKLTr---LLqDsLgGN  192 (956)
                      +++|+.   +|++.+|+.
T Consensus        65 N~~L~~di~~lr~~~~~~   82 (546)
T KOG0977|consen   65 NRKLEHDINLLRGVVGRE   82 (546)
T ss_pred             HHHHHHHHHHHHhhccCC
Confidence            344543   567777765

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.73  E-value=8  Score=38.41  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e  425 (956)
                      .|......++.++...+..++.|...|.=|.+.|..
T Consensus        95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            477888899999999999999999999988888765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=12  Score=45.27  Aligned_cols=120  Identities=20%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHH
Q 002175          239 DIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQ----------SDLKSENYMLADKH  308 (956)
Q Consensus       239 ~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE----------~eL~~e~~~Leek~  308 (956)
                      .+.++.......+...|-+|+.|+.++++.+......+..+....+........++          .+.+.++..+-..+
T Consensus        93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY  172 (772)
T KOG0999|consen   93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY  172 (772)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444556667777777777777776665544433333222221111111          11222333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      ..++++|--|++++..+.+-    +.+.+...-+|..|++++.-|..++++...
T Consensus       173 SELEEENIsLQKqVs~LR~s----QVEyEglkheikRleEe~elln~q~ee~~~  222 (772)
T KOG0999|consen  173 SELEEENISLQKQVSNLRQS----QVEYEGLKHEIKRLEEETELLNSQLEEAIR  222 (772)
T ss_pred             HHHHHhcchHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666777777666543    233444556677777777777777765544

>PRK02224 chromosome segregation protein; Provisional

Probab=93.71  E-value=7.5  Score=49.34  Aligned_cols=31  Identities=13%  Similarity=0.057  Sum_probs=13.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLF  420 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~  420 (956)
                      +.......+++++....+.+..+......+.
T Consensus       409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~  439 (880)
T PRK02224        409 NAEDFLEELREERDELREREAELEATLRTAR  439 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555544444444333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.66  E-value=6.3  Score=39.92  Aligned_cols=48  Identities=13%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE  359 (956)
Q Consensus       312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e  359 (956)
                      .++.......+........+......+++.++..|+.+...++.++.+
T Consensus        86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            333333333333333333333333334444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.62  E-value=7.3  Score=47.28  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 002175          243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK---SENYMLADKHKIEKEQNAQLR  319 (956)
Q Consensus       243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~---~e~~~Leek~k~~kee~~qLq  319 (956)
                      +..+....++.+|..|+.|+..++..+...........++..........++.+++   .....+++..+.++.++.+|.
T Consensus       103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~  182 (546)
T KOG0977|consen  103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR  182 (546)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            33333344455555666666666655555544443333333333333334443332   222233344444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          320 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE  354 (956)
Q Consensus       320 ~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE  354 (956)
                      ..+..+....+.-..--.+.+..++.|.+++.-++
T Consensus       183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55444443332211112233444444444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.57  E-value=2.8  Score=47.48  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175          311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL  361 (956)
Q Consensus       311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~  361 (956)
                      ++.+...+..++........+++.+++..+..++.+..+..+++.++.++.
T Consensus       214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444445555555555555555544433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=7.2  Score=48.55  Aligned_cols=40  Identities=28%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          387 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       387 e~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+.+..........++.+......++.+|+++|...|..-
T Consensus       581 ~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~  620 (698)
T KOG0978|consen  581 KLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL  620 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445666666777778888888889999999999888776

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.37  E-value=5.5  Score=50.81  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             hhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhH
Q 002175          840 LISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCA  892 (956)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  892 (956)
                      +..|+.+++--+.+.   |++.+..+.-+-+...+...-.+ +.+|--|.|-+
T Consensus       881 ~vtl~rf~nEsnr~~---s~h~~ls~qn~eLs~~~~~~sdq-~~~l~kd~p~~  929 (1195)
T KOG4643|consen  881 LVTLNRFLNESNRNL---SQHEILSTQNKELSQRALHDSDQ-YHLLGKDFPDQ  929 (1195)
T ss_pred             HHHHHHHHHHhhccc---hhhhhhhhhhHHHHHHHHhcccc-hhhhCCCCchH
Confidence            445666666544433   35555555444444444333222 34556666654

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.33  E-value=16  Score=40.74  Aligned_cols=71  Identities=17%  Similarity=0.235  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002175          242 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEK  312 (956)
Q Consensus       242 ~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~k  312 (956)
                      .....+....+.+|..|..++..+..++.....+......++....+.+..+.+++.+++..+.+..+.++
T Consensus        41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555556666666666666665555555556666666666666677777766666666555543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.31  E-value=6  Score=49.25  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=27.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ......+|..+|++.++.+.+|--|...|..+|..+
T Consensus       484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~  519 (1118)
T KOG1029|consen  484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK  519 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            344556777778888888888888888888888777

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.29  E-value=6.5  Score=49.69  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=22.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e  425 (956)
                      ....-..+...+|+.+.-.++...+++.+|...|..
T Consensus       504 ~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k  539 (775)
T PF10174_consen  504 KLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK  539 (775)
T ss_pred             HHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333334455666666666777777777777766654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.22  E-value=1.7  Score=52.40  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      ....+....+.++.++.+.+.+++.++.++..|+.++.
T Consensus       288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444556666666666666666666666664

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.21  E-value=1.9  Score=50.82  Aligned_cols=114  Identities=21%  Similarity=0.204  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccc
Q 002175          306 DKHKIEKEQNAQLRNQVAQLLQLEQ-------EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV  378 (956)
Q Consensus       306 ek~k~~kee~~qLq~ql~~l~~~ee-------Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s  378 (956)
                      ++.+.++....+++..+..+.+..+       .++.++...+++|+.|+..+..|..|+...--+.+...-       ..
T Consensus       302 ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~-------mn  374 (622)
T COG5185         302 EKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL-------MN  374 (622)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHH-------HH
Confidence            3334444444444444444444333       356666667777777777777777766432221111000       00


Q ss_pred             cccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          379 SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       379 ~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      +.-.++..+++.......+|...+..++-+++...++.+++++.+..-
T Consensus       375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl  422 (622)
T COG5185         375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSL  422 (622)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            001122233333444455666666666666666666666666555443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.21  E-value=11  Score=45.44  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             hhhhhhhcc--CChhhh-HHHHHHHHhhcccccccccCCCCCCcccc
Q 002175          681 KALAALFVH--TPAGEL-QRQIRSWLAENFEFLSVTGDDASGGTTGQ  724 (956)
Q Consensus       681 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  724 (956)
                      .-||-||-|  +-.||+ -|-|-.++.|.--|     .|..+|..++
T Consensus       492 deLaqlyh~vc~~n~etp~rvmlD~~~e~~~~-----~ds~~~~~s~  533 (772)
T KOG0999|consen  492 DELAQLYHHVCECNNETPNRVMLDYYRETDLR-----NDSPTGIQSP  533 (772)
T ss_pred             HHHHHHHHHHHHHcCCCCchhhhhhhcccccc-----CCCcccccCc
Confidence            346666544  112221 14455555554433     7788887776

>PRK03918 chromosome segregation protein; Provisional

Probab=93.13  E-value=11  Score=47.75  Aligned_cols=10  Identities=40%  Similarity=0.421  Sum_probs=4.2

Q ss_pred             ceeecccCCC
Q 002175          914 ALLTLEEGGS  923 (956)
Q Consensus       914 ~~~~~~~~~~  923 (956)
                      ..+.+..|+|
T Consensus       864 ~~l~~~~~~s  873 (880)
T PRK03918        864 IRVSLEGGVS  873 (880)
T ss_pred             EEEEecCCee
Confidence            3344444444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.02  E-value=8.6  Score=43.64  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          397 KLEEELKKRDALIERLHEENEKLF  420 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~  420 (956)
                      .+++....+...+...++|.+.++
T Consensus       280 elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  280 ELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555555555555554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.96  E-value=14  Score=45.55  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             CchhhHHHhhhCCC-CccccchhhhccchhhHHHHHHHH
Q 002175          493 PAGEYLTAALNDFN-PEQYDNLAVISDGANKLLMLVLAA  530 (956)
Q Consensus       493 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  530 (956)
                      --|-||-++--|-. -+|||.+----||-=--||+=++-
T Consensus       839 ~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~  877 (961)
T KOG4673|consen  839 MSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELAS  877 (961)
T ss_pred             cchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34666665543322 357887776677776667776544

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.95  E-value=3.8  Score=46.49  Aligned_cols=72  Identities=19%  Similarity=0.360  Sum_probs=38.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          292 TLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       292 eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      .|+.++...+....+....-..+...++..+.......+..+..+.+.+.+++.++.+++.+..+..+++..
T Consensus       188 ~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e  259 (325)
T PF08317_consen  188 ELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334333333333333334555666666666666655666666666666666666666666655544443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.89  E-value=10  Score=48.58  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHH
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER  411 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LEr  411 (956)
                      ++.+.++.+.++..++..+..++.++..++.+...                 +...........++++++++.+++.+..
T Consensus       820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~-----------------l~~kv~~~~~~~~~~~~el~~~k~k~~~  882 (1174)
T KOG0933|consen  820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN-----------------LEAKVDKVEKDVKKAQAELKDQKAKQRD  882 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence            44444444555555555555555555444443333                 3333344555566677777777776655


Q ss_pred             HHHHHHHH
Q 002175          412 LHEENEKL  419 (956)
Q Consensus       412 L~eE~ekL  419 (956)
                      ...+...+
T Consensus       883 ~dt~i~~~  890 (1174)
T KOG0933|consen  883 IDTEISGL  890 (1174)
T ss_pred             hhHHHhhh
Confidence            55544333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.80  E-value=6.6  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          247 ELYEREKEIQDLKQEILGLRQALK  270 (956)
Q Consensus       247 el~~~~~eI~~Lq~EI~~Lk~~L~  270 (956)
                      ++..++.+-..|+.|...|+....
T Consensus       168 Klk~LEeEN~~LR~Ea~~L~~et~  191 (306)
T PF04849_consen  168 KLKSLEEENEQLRSEASQLKTETD  191 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHh
Confidence            333444444444544444443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.79  E-value=8.2  Score=44.05  Aligned_cols=120  Identities=18%  Similarity=0.254  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHH
Q 002175          244 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI---EKEQNAQLRN  320 (956)
Q Consensus       244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~---~kee~~qLq~  320 (956)
                      .+..+++.+.+.++|+...++|..+|-...+-......+.+........+.++....+..+.+....   .+++.+.|..
T Consensus        90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr  169 (401)
T PF06785_consen   90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR  169 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence            3445556667777788888888777766654333333333333333333333333333333222222   2233344444


Q ss_pred             HHHHHHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          321 QVAQLLQLE----QE-------QKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       321 ql~~l~~~e----eE-------lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      .+.+.....    ++       ....+..++..|..|+.+++.|--++..++.-
T Consensus       170 ELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQl  223 (401)
T PF06785_consen  170 ELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQL  223 (401)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            443333332    22       33445556666777777777766666665553

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.78  E-value=8.5  Score=47.60  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      ++++..|+...-.+.....+++..++..+.....|..++..++.++..++.
T Consensus       166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e  216 (617)
T PF15070_consen  166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE  216 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333433333333333344444444444444555555555555544443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=92.72  E-value=17  Score=46.21  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ...+++...+.+++++..+.+.|...|.++
T Consensus       462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk  491 (775)
T PF10174_consen  462 ERQEELETYQKELKELKAKLESLQKELSEK  491 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            345666677777778888888888888888

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.64  E-value=3.3  Score=51.90  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=15.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHE  414 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~e  414 (956)
                      .+.+..++.-++|+....+++.++.
T Consensus       689 ~I~~iL~~~~~~I~~~v~~ik~i~~  713 (717)
T PF10168_consen  689 TIKEILKQQGEEIDELVKQIKNIKK  713 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.60  E-value=8  Score=48.84  Aligned_cols=52  Identities=13%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ++++.+|..++.++.........+.+...+..+.++.++..+..+++.+...
T Consensus       465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555544444555555555566666666655555555544

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.58  E-value=16  Score=38.85  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          401 ELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       401 ELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ........+..++.|.+.|.+.|.+|
T Consensus       165 K~~~~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  165 KHKEAQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556778888888888888887

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.57  E-value=16  Score=41.82  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLT  424 (956)
Q Consensus       392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~  424 (956)
                      -++.++.+..|.+++.+.+.|.-|.+.|.|-=.
T Consensus       193 ~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~  225 (401)
T PF06785_consen  193 HSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES  225 (401)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            346678889999999999999999999988644

>TIGR00606 rad50 rad50

Probab=92.55  E-value=9.1  Score=51.15  Aligned_cols=28  Identities=11%  Similarity=0.124  Sum_probs=18.7

Q ss_pred             hHHHHHHHhhhHHHHHHhcCccchhhhh
Q 002175          539 EHEILAEIRDAVFAFIRKMEPTRVMDTM  566 (956)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (956)
                      .++=+.||-.-+-.+.++.=+..+.|+.
T Consensus      1135 ~~~~~~~~n~~~~~~w~~~~~~~~~~~i 1162 (1311)
T TIGR00606      1135 HSMKMEEINKIIRDLWRSTYRGQDIEYI 1162 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccHHHHh
Confidence            4455677777777777776666666654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=92.50  E-value=5.4  Score=53.21  Aligned_cols=30  Identities=10%  Similarity=0.252  Sum_probs=17.7

Q ss_pred             hCccccccCchhHHHHHHHHHHHHHHHHhh
Q 002175          880 RMPSLLDIDHPCAQRQIADARRMVEVLQQM  909 (956)
Q Consensus       880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  909 (956)
                      .-|.+|-+|-|.+.--......+.+.|-.+
T Consensus      1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~ 1251 (1311)
T TIGR00606      1222 LNCGIIALDEPTTNLDRENIESLAHALVEI 1251 (1311)
T ss_pred             cCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence            446677777777665555555555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=92.48  E-value=8.9  Score=43.49  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 002175          255 IQDLKQEILGLRQALKEANDQCVLLYNE  282 (956)
Q Consensus       255 I~~Lq~EI~~Lk~~L~~~~~q~~~l~~E  282 (956)
                      +..|+.++.++.+.++...-.+..+.++
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNe  106 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNE  106 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence            3455666666666666655544444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.43  E-value=14  Score=37.57  Aligned_cols=45  Identities=7%  Similarity=0.093  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE  359 (956)
Q Consensus       315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e  359 (956)
                      +.....++.+.....+++..++...+......+.++..+..++.+
T Consensus        96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen   96 LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333333334333444444444444555555555555555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.43  E-value=28  Score=42.76  Aligned_cols=32  Identities=22%  Similarity=0.081  Sum_probs=22.9

Q ss_pred             cccccccchhhhhHHHHhhhhcchhhhhhhhc
Q 002175          657 WRHQVTGGKLREIQEEAKSFATGNKALAALFV  688 (956)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (956)
                      .+.|-++|-+--++----.|-+|||+.+.+|.
T Consensus       569 ~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~  600 (629)
T KOG0963|consen  569 ERKYKRLGSFERITLSLGRTLLFNKMTRTLFF  600 (629)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666778999999998774

>PRK03918 chromosome segregation protein; Provisional

Probab=92.39  E-value=27  Score=44.28  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             CccccccCchhHHHHHHHHHHHHHHHHhhc
Q 002175          881 MPSLLDIDHPCAQRQIADARRMVEVLQQMR  910 (956)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  910 (956)
                      =|.++=+|-|.+.=-......+++.|..+.
T Consensus       812 ~~~~lilDEp~~~lD~~~~~~l~~~l~~~~  841 (880)
T PRK03918        812 NIPLLILDEPTPFLDEERRRKLVDIMERYL  841 (880)
T ss_pred             CCCeEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence            367777888887766666677777776654

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.37  E-value=12  Score=49.26  Aligned_cols=44  Identities=18%  Similarity=0.033  Sum_probs=27.1

Q ss_pred             hHHHHH--HHHhhcccccccccC----CCCCCcccchhhhHHhhhhhhhc
Q 002175          695 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA  738 (956)
Q Consensus       695 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  738 (956)
                      ++|+++  .|+-==+-|++++++    ....++-|++=.+-..++=.|+.
T Consensus       598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~  647 (1109)
T PRK10929        598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT  647 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence            344444  255433444555554    55677889998888877776664

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=22  Score=44.92  Aligned_cols=32  Identities=13%  Similarity=0.358  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175          335 QIQQRDSTIKTLQAKINSIESQRNEALHSSEV  366 (956)
Q Consensus       335 qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~  366 (956)
                      ++.+......+++.++..++.+++++....+.
T Consensus       800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa  831 (970)
T KOG0946|consen  800 NLSEESTRLQELQSELTQLKEQIQTLLERTSA  831 (970)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35556666777888888888888776665443

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=92.26  E-value=22  Score=40.31  Aligned_cols=72  Identities=10%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHH
Q 002175          334 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS-TIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI  409 (956)
Q Consensus       334 ~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs-~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~L  409 (956)
                      .-+..++.++++|+++.+-|+.+|...+.....-. ....++-..... +.   ....|.+.-+.|+.|...+.++|
T Consensus        59 NavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDk-vM---PVKqWLEERR~lQgEmQ~LrDKL  131 (351)
T PF07058_consen   59 NAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDK-VM---PVKQWLEERRFLQGEMQQLRDKL  131 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCc-cc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777766655433210 111122111111 01   12356666677777777776666

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=92.20  E-value=8.4  Score=48.14  Aligned_cols=11  Identities=36%  Similarity=0.833  Sum_probs=7.7

Q ss_pred             HHHHHHhhccc
Q 002175          698 QIRSWLAENFE  708 (956)
Q Consensus       698 ~~~~~~~~~~~  708 (956)
                      .+-+||||.=.
T Consensus       688 ~Le~~laekR~  698 (1265)
T KOG0976|consen  688 HLEGWLAEKRN  698 (1265)
T ss_pred             HHHHHHhhhhh
Confidence            36789888554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.18  E-value=24  Score=43.81  Aligned_cols=41  Identities=22%  Similarity=0.213  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 002175          246 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKA  286 (956)
Q Consensus       246 ~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~  286 (956)
                      ++......+|..|......|+..+............++...
T Consensus       527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~k  567 (786)
T PF05483_consen  527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCK  567 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666666666666666665555544444444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=92.12  E-value=18  Score=41.15  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 002175          241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV  283 (956)
Q Consensus       241 ~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~El  283 (956)
                      ..+....+++....-..+..++..|+..+....++........
T Consensus       116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~  158 (309)
T PF09728_consen  116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHF  158 (309)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445566677777777776666655433333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.06  E-value=20  Score=40.84  Aligned_cols=54  Identities=24%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYM  303 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~  303 (956)
                      .+...+..|+.+...|+.++......+..+..+..........++.....+...
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~   77 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF   77 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667778888888888888777777777777777766666666555544443

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=91.87  E-value=14  Score=41.00  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          388 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       388 ~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+...+..--|+++|+..+..|+++...++.+.+.+..+
T Consensus       273 VEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~  311 (330)
T KOG2991|consen  273 VEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK  311 (330)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334444556788999999999999999999999988776

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.85  E-value=6.9  Score=38.77  Aligned_cols=95  Identities=17%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE  329 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e  329 (956)
                      .+...|+.+..|+..++.++.....+...+.+++-+.......+               .....+...|+.++..+....
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~---------------~~~~~~~~~L~~el~~l~~ry   84 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL---------------RALKKEVEELEQELEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555544444433444433332222221               222334445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          330 QEQKMQIQQRDSTIKTLQAKINSIESQRNE  359 (956)
Q Consensus       330 eElk~qlqe~e~eIe~LqeEik~LE~qL~e  359 (956)
                      +..-.-+-++..++++|+..+..++.-+..
T Consensus        85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   85 QTLLELLGEKSEEVEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            555555556666666666666666655543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.72  E-value=15  Score=41.78  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      +..++....+..++.......++++.+++..+..|+...++..+++.++.++...
T Consensus       207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~  261 (312)
T smart00787      207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK  261 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444555555555555566666666666666666666666555553

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.70  E-value=16  Score=39.76  Aligned_cols=13  Identities=31%  Similarity=0.411  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 002175          253 KEIQDLKQEILGL  265 (956)
Q Consensus       253 ~eI~~Lq~EI~~L  265 (956)
                      .++..|...+..+
T Consensus        36 ~e~~~l~rri~~l   48 (237)
T PF00261_consen   36 AEVASLQRRIQLL   48 (237)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.68  E-value=25  Score=48.10  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 002175          303 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL  382 (956)
Q Consensus       303 ~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~  382 (956)
                      -.......+....+.++..+..+.....+++.++......+..|+.+...++.+.+.+........              
T Consensus      1240 ~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d-------------- 1305 (1822)
T KOG4674|consen 1240 ANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSD-------------- 1305 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------
Confidence            334444455555566666666666666666666666666667777777777766666665543310              


Q ss_pred             cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          383 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF  420 (956)
Q Consensus       383 k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~  420 (956)
                        ..+.....+...+|++++...+.+++.+..+..++.
T Consensus      1306 --~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1306 --KNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111122233555666777777777776666666666

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=91.49  E-value=26  Score=45.17  Aligned_cols=29  Identities=34%  Similarity=0.335  Sum_probs=16.1

Q ss_pred             chhhhHH--hhhhhhh-------ccCCCCCCCCchhhh
Q 002175          724 QLELLST--AIMDGWM-------AGLGGAVPPSTDALG  752 (956)
Q Consensus       724 ~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~  752 (956)
                      +.+.+||  -.++|.|       +-+|.+-||.+-||-
T Consensus       897 ~h~~ls~qn~eLs~~~~~~sdq~~~l~kd~p~~cgal~  934 (1195)
T KOG4643|consen  897 QHEILSTQNKELSQRALHDSDQYHLLGKDFPDQCGALR  934 (1195)
T ss_pred             hhhhhhhhhHHHHHHHHhcccchhhhCCCCchHHHhhh
Confidence            5555554  2455554       346677777655553

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=91.42  E-value=32  Score=42.78  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 002175          404 KRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       404 kree~LErL~eE~ekL~qrL~eK  426 (956)
                      ++..++.++..+...+...|..|
T Consensus       199 eL~~kl~~l~~~l~~~~e~le~K  221 (617)
T PF15070_consen  199 ELQKKLGELQEKLHNLKEKLELK  221 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555556666666676666

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=91.42  E-value=23  Score=43.48  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQ  330 (956)
Q Consensus       251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~ee  330 (956)
                      ...++++|+.++..+..++.....+.....+..++..+....+...++..-...+      +.--+.+.++...+...+.
T Consensus       119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e------~~~~q~~~e~e~~L~~~~~  192 (629)
T KOG0963|consen  119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETE------EKLEQEWAEREAGLKDEEQ  192 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            4456677777777777777666555544444433333322222222221111111      1112234444455555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175          331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE  410 (956)
Q Consensus       331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE  410 (956)
                      .++.++...+++|..++..+.....++-.+....+.                    ++..-.+...-...+++.-+..+.
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de--------------------e~~~k~aev~lim~eLe~aq~ri~  252 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE--------------------EVAAKAAEVSLIMTELEDAQQRIV  252 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777877777777777777655554332                    122223334456677888888999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 002175          411 RLHEENEKLFDRLTEK  426 (956)
Q Consensus       411 rL~eE~ekL~qrL~eK  426 (956)
                      .+.+|++.|+..+..-
T Consensus       253 ~lE~e~e~L~~ql~~~  268 (629)
T KOG0963|consen  253 FLEREVEQLREQLAKA  268 (629)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998766

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=91.35  E-value=28  Score=39.82  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002175          243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL  279 (956)
Q Consensus       243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l  279 (956)
                      +..+.+.+-......|++++..|.+.+..+..+....
T Consensus       120 diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~r  156 (391)
T KOG1850|consen  120 DIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEER  156 (391)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444455555555555555554444433

>PRK11281 hypothetical protein; Provisional

Probab=91.06  E-value=13  Score=48.99  Aligned_cols=29  Identities=17%  Similarity=0.304  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          391 SSAVSKKLEEELKKRDALIERLHEENEKL  419 (956)
Q Consensus       391 ~s~l~kkLeEELkkree~LErL~eE~ekL  419 (956)
                      ..+...+|-+++.+.-+++.++..++.+.
T Consensus       283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~  311 (1113)
T PRK11281        283 ELEINLQLSQRLLKATEKLNTLTQQNLRV  311 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666665555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.03  E-value=6.1  Score=53.31  Aligned_cols=34  Identities=3%  Similarity=-0.021  Sum_probs=16.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLT  424 (956)
Q Consensus       391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~  424 (956)
                      .........+.+.....++..+..+...+...+.
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~~lea~le  473 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS  473 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555544443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.99  E-value=16  Score=41.65  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR  357 (956)
Q Consensus       314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL  357 (956)
                      ++...+.++.++.....++...++....++..++.+|.+++..+
T Consensus       219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.95  E-value=16  Score=45.85  Aligned_cols=11  Identities=27%  Similarity=0.461  Sum_probs=6.7

Q ss_pred             eeeeeEEeecc
Q 002175          122 LYSKLSLVDLA  132 (956)
Q Consensus       122 ~~SkLsfVDLA  132 (956)
                      ..|..+++||-
T Consensus        22 yssp~qvidln   32 (1265)
T KOG0976|consen   22 YSSPFQVIDLN   32 (1265)
T ss_pred             cCCCceeeecc
Confidence            34566777764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=90.93  E-value=9.6  Score=45.06  Aligned_cols=14  Identities=0%  Similarity=-0.233  Sum_probs=9.4

Q ss_pred             cCCCCCchhhhhcc
Q 002175          174 VPYENSMLTKVLAD  187 (956)
Q Consensus       174 VPYRdSKLTrLLqD  187 (956)
                      .+|-.++++|..+.
T Consensus       209 w~~~scpvcR~~q~  222 (493)
T KOG0804|consen  209 WWDSSCPVCRYCQS  222 (493)
T ss_pred             cccCcChhhhhhcC
Confidence            45666777777665

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.91  E-value=28  Score=42.21  Aligned_cols=76  Identities=25%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          246 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ  321 (956)
Q Consensus       246 ~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~q  321 (956)
                      .+++...++.++|++.+..|+..+.+...+...+.+++-....-...++.++......++.+....-..+.+|.+.
T Consensus       331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA  406 (654)
T KOG4809|consen  331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA  406 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666777777777777666666666666666666666666777778777777776665555555555443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=90.67  E-value=24  Score=45.99  Aligned_cols=29  Identities=24%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          398 LEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       398 LeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      -+..|..+.++|..|..+.+.+.+-|.+|
T Consensus      1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence            34455566666677777777777776666

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.65  E-value=26  Score=37.35  Aligned_cols=52  Identities=13%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          304 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES  355 (956)
Q Consensus       304 Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~  355 (956)
                      +-..+..+.++...|+.++.............+.+.+.++..++++++.|+.
T Consensus        59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~  110 (194)
T PF15619_consen   59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK  110 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555556666666555555555555555555555555555555443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.59  E-value=27  Score=41.31  Aligned_cols=30  Identities=33%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      +.+++-+.-++.++.+..+.+.++.+.-..
T Consensus       364 rfq~ekeatqELieelrkelehlr~~kl~~  393 (502)
T KOG0982|consen  364 RFQEEKEATQELIEELRKELEHLRRRKLVL  393 (502)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666666777888888888888876666

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.51  E-value=36  Score=43.94  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .....-+.+..+-+++...++.+.++.++-.++|...
T Consensus       464 el~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~  500 (1200)
T KOG0964|consen  464 ELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT  500 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444555666667777777777777777777665

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.47  E-value=38  Score=38.88  Aligned_cols=156  Identities=24%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQLLQL  328 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~-~e~~~Leek~k~~kee~~qLq~ql~~l~~~  328 (956)
                      +...+...|+.|+..|++.+.++..++..+...+....-....+..... .+...+       -.+.+.++.+..++...
T Consensus        76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~l-------V~qLEk~~~q~~qLe~d  148 (319)
T PF09789_consen   76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDL-------VEQLEKLREQIEQLERD  148 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            3344455566666666666666555554444433322111111111100 111112       22233344444444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHH
Q 002175          329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL  408 (956)
Q Consensus       329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~  408 (956)
                      .+.+..+.++...+...++.+..+|-.+++..+.....+                 --+.+......+.|.+.+..++++
T Consensus       149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~r-----------------ivDIDaLi~ENRyL~erl~q~qeE  211 (319)
T PF09789_consen  149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENR-----------------IVDIDALIMENRYLKERLKQLQEE  211 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----------------cccHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555666666666666665555433330                 012233344455666666666665


Q ss_pred             HHHHHHHHHHHHHHhhhhccC
Q 002175          409 IERLHEENEKLFDRLTEKASS  429 (956)
Q Consensus       409 LErL~eE~ekL~qrL~eK~Ss  429 (956)
                      ..-+..-..+-..-|+.|.+.
T Consensus       212 ~~l~k~~i~KYK~~le~k~~~  232 (319)
T PF09789_consen  212 KELLKQTINKYKSALERKRKK  232 (319)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            555555555555555544333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=90.40  E-value=22  Score=43.49  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=16.4

Q ss_pred             hHHHHHHHhhhHHHHHHhcCccchhhhh
Q 002175          539 EHEILAEIRDAVFAFIRKMEPTRVMDTM  566 (956)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (956)
                      -++|=+.+..|-.-| |.-+=.+.+|+-
T Consensus       516 ~~~V~~~f~~Ae~lF-~~~~Y~~al~~~  542 (569)
T PRK04778        516 NEEVAEALNEAERLF-REYDYKAALEII  542 (569)
T ss_pred             CHHHHHHHHHHHHHH-HhCChHHHHHHH
Confidence            345555666666677 766666555553

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=90.38  E-value=14  Score=43.70  Aligned_cols=27  Identities=11%  Similarity=0.197  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          334 MQIQQRDSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       334 ~qlqe~e~eIe~LqeEik~LE~qL~el  360 (956)
                      ...+..+..+..+..+|..|++|+..+
T Consensus       421 ~~~e~~~~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  421 ELEEREKEALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333344445555566666666666443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=30  Score=43.33  Aligned_cols=18  Identities=11%  Similarity=0.093  Sum_probs=11.0

Q ss_pred             HHHHhhhHHHHHHHHHHh
Q 002175          150 VLHVMKSLSALGDVLSSL  167 (956)
Q Consensus       150 a~~INkSL~aLg~VI~aL  167 (956)
                      ...||..+-.|...|.-.
T Consensus       260 ~~~in~e~~~L~Ssl~e~  277 (698)
T KOG0978|consen  260 FSSINREMRHLISSLQEH  277 (698)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            556777776666655433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=90.03  E-value=19  Score=40.73  Aligned_cols=165  Identities=18%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          252 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE  331 (956)
Q Consensus       252 ~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeE  331 (956)
                      ..+|..|+.|+..++.+-....   ..++.+++.......+|+..++--...+......+..+..       .+..+..-
T Consensus         5 q~eia~LrlEidtik~q~qekE---~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn-------~L~aENt~   74 (305)
T PF14915_consen    5 QDEIAMLRLEIDTIKNQNQEKE---KKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLN-------VLKAENTM   74 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHH-------HHHHHHHH
Confidence            4455555555555554433322   2344555555555666666666544444444444433333       33333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccc--------cccccccccccChhHHHHHHHHHHH
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV--------SSVLRTTGDGMDSSAVSKKLEEELK  403 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s--------~s~~k~~ee~~d~s~l~kkLeEELk  403 (956)
                      +..+++.....-+.|+.+++.....|.......+..-+......-+-        .-..++..++....+-..-|-+.|.
T Consensus        75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLs  154 (305)
T PF14915_consen   75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLS  154 (305)
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHH
Confidence            44445444555556666666666666555554332111000000000        0001111222233334456667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 002175          404 KRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       404 kree~LErL~eE~ekL~qrL~eK  426 (956)
                      +-+.+...|.-+....++.|.+|
T Consensus       155 kaesK~nsLe~elh~trdaLrEK  177 (305)
T PF14915_consen  155 KAESKFNSLEIELHHTRDALREK  177 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788888888888888888

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.96  E-value=33  Score=43.20  Aligned_cols=37  Identities=32%  Similarity=0.338  Sum_probs=25.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+..+.+..+-.+...+++.+++++-+++|..-..||
T Consensus       473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek  509 (1118)
T KOG1029|consen  473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK  509 (1118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            4555666666667777777777777777777666666

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.84  E-value=28  Score=41.95  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNE  359 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~e  359 (956)
                      +..++-..++++..+--+.+++..-|..
T Consensus       238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~  265 (596)
T KOG4360|consen  238 LLSQLVDLQKKIKYLRHEKEELDEHLQA  265 (596)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555544443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=89.69  E-value=17  Score=45.08  Aligned_cols=58  Identities=24%  Similarity=0.424  Sum_probs=38.9

Q ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHH-HHHHHHhhc
Q 002175          783 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILN-QVKDAVRQS  857 (956)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  857 (956)
                      |.+.-|-++|-.||-++|+-.-+||-|---                ---+|+-|| -|.-|.++|| |+.+.+++.
T Consensus       901 ek~~~~p~~~~~ledL~qRy~a~LqmyGEk----------------~Ee~EELrl-Dl~dlK~mYk~QIdeLl~~~  959 (961)
T KOG4673|consen  901 EKADRVPGIKAELEDLRQRYAAALQMYGEK----------------DEELEELRL-DLVDLKEMYKEQIDELLNKI  959 (961)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHh-hHHHHHHHHHHHHHHHHhcc
Confidence            456678899999999999999999876321                123566665 4666666665 555555543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.62  E-value=33  Score=45.11  Aligned_cols=19  Identities=26%  Similarity=0.637  Sum_probs=10.8

Q ss_pred             CcccchhhhHHhhhhhhhc
Q 002175          720 GTTGQLELLSTAIMDGWMA  738 (956)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~  738 (956)
                      -..|-|=+|.--.+|||.+
T Consensus      1093 e~e~~l~~l~~~~~eg~ls 1111 (1317)
T KOG0612|consen 1093 EAEQILPLLQGSRLEGWLS 1111 (1317)
T ss_pred             hhhcchhhhhhhhhhcccc
Confidence            3444455555556777754

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.04  E-value=20  Score=37.19  Aligned_cols=15  Identities=27%  Similarity=0.519  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 002175          254 EIQDLKQEILGLRQA  268 (956)
Q Consensus       254 eI~~Lq~EI~~Lk~~  268 (956)
                      .+..++.|+.++...
T Consensus        89 ~l~~l~~el~~l~~~  103 (191)
T PF04156_consen   89 QLQQLQEELDQLQER  103 (191)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.88  E-value=28  Score=35.06  Aligned_cols=23  Identities=13%  Similarity=0.397  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 002175          252 EKEIQDLKQEILGLRQALKEAND  274 (956)
Q Consensus       252 ~~eI~~Lq~EI~~Lk~~L~~~~~  274 (956)
                      ...+..+..++..|...+..+..
T Consensus        58 ~~~~~~l~~d~~~l~~~~~rL~~   80 (151)
T PF11559_consen   58 SDKLRRLRSDIERLQNDVERLKE   80 (151)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH
Confidence            33444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.73  E-value=28  Score=47.68  Aligned_cols=75  Identities=21%  Similarity=0.200  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 002175          254 EIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLAD---KHKIEKEQNAQLRNQVAQLLQL  328 (956)
Q Consensus       254 eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Lee---k~k~~kee~~qLq~ql~~l~~~  328 (956)
                      +++.|..-+..|+..+......+..+...+++.......++..+......+..   ..+.++.++.+|+.+.+.+...
T Consensus      1223 ~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1223 EVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555666665555555555555555555555566555554444333   3333555666666665555544

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=88.59  E-value=57  Score=39.13  Aligned_cols=30  Identities=37%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      +|++.++.++..+.++..+++.+..+|.+.
T Consensus       484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a  513 (622)
T COG5185         484 TLEEDIKNLKHDINELTQILEKLELELSEA  513 (622)
T ss_pred             eHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            377888888888888999999999998877

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=88.30  E-value=79  Score=39.59  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR  357 (956)
Q Consensus       325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL  357 (956)
                      +......++.++....+.|+.|+.+++.|+.++
T Consensus       592 lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~  624 (786)
T PF05483_consen  592 LENKCNNLRKQVENKNKNIEELQQENKALKKKI  624 (786)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333334455555555556666666666666555

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.22  E-value=39  Score=39.87  Aligned_cols=18  Identities=22%  Similarity=0.348  Sum_probs=11.9

Q ss_pred             hCCCCccccchhhhccch
Q 002175          503 NDFNPEQYDNLAVISDGA  520 (956)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~  520 (956)
                      +||||+-|--+||-.||+
T Consensus       225 ~d~d~~~~~~iAas~d~~  242 (459)
T KOG0288|consen  225 IDFDSDNKHVIAASNDKN  242 (459)
T ss_pred             eeecCCCceEEeecCCCc
Confidence            567777766666666664

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=88.17  E-value=26  Score=42.83  Aligned_cols=17  Identities=29%  Similarity=0.622  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002175          343 IKTLQAKINSIESQRNE  359 (956)
Q Consensus       343 Ie~LqeEik~LE~qL~e  359 (956)
                      ...++++++.++.++..
T Consensus       350 ~~~lekeL~~Le~~~~~  366 (569)
T PRK04778        350 VRQLEKQLESLEKQYDE  366 (569)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=88.11  E-value=42  Score=36.26  Aligned_cols=29  Identities=31%  Similarity=0.331  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          393 AVSKKLEEELKKRDALIERLHEENEKLFD  421 (956)
Q Consensus       393 ~l~kkLeEELkkree~LErL~eE~ekL~q  421 (956)
                      ...++.+-.+..++..|++...||+.|-.
T Consensus       168 a~lkk~e~~~~SLe~~LeQK~kEn~ELtk  196 (207)
T PF05010_consen  168 ASLKKEEMKVQSLEESLEQKTKENEELTK  196 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566666666665543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.64  E-value=79  Score=38.82  Aligned_cols=26  Identities=4%  Similarity=0.139  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          314 QNAQLRNQVAQLLQLEQEQKMQIQQR  339 (956)
Q Consensus       314 e~~qLq~ql~~l~~~eeElk~qlqe~  339 (956)
                      ++++|.+.+..+....+.+...+-+.
T Consensus       340 Er~~l~r~l~~i~~~~d~l~k~vw~~  365 (581)
T KOG0995|consen  340 ERNKLKRELNKIQSELDRLSKEVWEL  365 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34444444444444443333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=87.47  E-value=47  Score=44.31  Aligned_cols=31  Identities=16%  Similarity=0.380  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHhhccccce-------eecccCCCC
Q 002175          894 RQIADARRMVEVLQQMRSDVAL-------LTLEEGGSP  924 (956)
Q Consensus       894 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  924 (956)
                      ..+...+.++.+|+.-..-+.|       ++.-|||++
T Consensus      1071 ~~~~~l~~l~~~l~~~~~~~~l~~l~~le~~v~Eng~~ 1108 (1201)
T PF12128_consen 1071 EYVNALRELLDILPSGGFSLSLEDLFDLEFRVKENGND 1108 (1201)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHeeeEEEEEECCcc
Confidence            3666677777777763322222       455667766

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=87.47  E-value=36  Score=35.24  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKE  271 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~  271 (956)
                      .+..++.+++..+..+...+..
T Consensus        92 ~l~~el~~l~~~~~~~~~~l~~  113 (191)
T PF04156_consen   92 QLQEELDQLQERIQELESELEK  113 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.17  E-value=21  Score=46.25  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ....+....+++.++.++..+++++..+..|...+++.
T Consensus       398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~  435 (1141)
T KOG0018|consen  398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL  435 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888888888888888888888887776

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.06  E-value=37  Score=43.77  Aligned_cols=72  Identities=22%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             cHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhccccceeeccc
Q 002175          842 SLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEE  920 (956)
Q Consensus       842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  920 (956)
                      .|+++.+++++++.+...---+-.+|++...-++...|+.-   ..-|||+-+ |.-- +-+|.+.  +.--.||++-|
T Consensus       855 el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~---~lek~~~~~-~~~d-Ke~Ek~~--~rk~~Ll~Kre  926 (1200)
T KOG0964|consen  855 ELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK---NLEKEKKDN-INFD-KELEKLV--RRKHMLLKKRE  926 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-hhhh-HHHHHHH--HHHHHHHHHHH
Confidence            35667777777776665333333455555555555555433   335777766 2211 3333332  22335666655

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=86.81  E-value=71  Score=42.07  Aligned_cols=7  Identities=29%  Similarity=0.368  Sum_probs=3.3

Q ss_pred             hccccCC
Q 002175          185 LADSLGE  191 (956)
Q Consensus       185 LqDsLgG  191 (956)
                      ++|+|..
T Consensus      1480 v~~Flt~ 1486 (1758)
T KOG0994|consen 1480 VRDFLTQ 1486 (1758)
T ss_pred             HHHHhcC
Confidence            3455543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=86.72  E-value=83  Score=42.10  Aligned_cols=35  Identities=11%  Similarity=0.238  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .....+++.+++.++++|++.......+.+=-.-+
T Consensus       770 ~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~  804 (1201)
T PF12128_consen  770 PERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWL  804 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33566677777777777776666666555544443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.68  E-value=35  Score=43.18  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175          329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL  361 (956)
Q Consensus       329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~  361 (956)
                      ..+....+++.+.++..+++.++.+-....+.-
T Consensus       801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a  833 (970)
T KOG0946|consen  801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAA  833 (970)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444455555555555555554444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.52  E-value=8.2  Score=41.47  Aligned_cols=26  Identities=15%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQ  275 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q  275 (956)
                      .....+..++.|+..+++++.+...+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55677888999999999888876543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=86.47  E-value=33  Score=43.15  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=18.9

Q ss_pred             hhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHHHhcCccchhh
Q 002175          521 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD  564 (956)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (956)
                      ||++++++++|+=-           +=+..+.|++-+=-++|.+
T Consensus       429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s  461 (754)
T TIGR01005       429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR  461 (754)
T ss_pred             chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence            77777777665432           2245577777664444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=86.31  E-value=24  Score=42.01  Aligned_cols=21  Identities=38%  Similarity=0.441  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 002175          252 EKEIQDLKQEILGLRQALKEA  272 (956)
Q Consensus       252 ~~eI~~Lq~EI~~Lk~~L~~~  272 (956)
                      +..|..|+-.+.-|...++++
T Consensus       330 q~~IqdLq~sN~yLe~kvkeL  350 (527)
T PF15066_consen  330 QNRIQDLQCSNLYLEKKVKEL  350 (527)
T ss_pred             HHHHHHhhhccHHHHHHHHHH
Confidence            345555555555555544444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.20  E-value=5.3  Score=42.06  Aligned_cols=40  Identities=18%  Similarity=0.325  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR  357 (956)
Q Consensus       318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL  357 (956)
                      |+..+..+......+...+.+++..++.+++++..|..++
T Consensus       121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~  160 (194)
T PF08614_consen  121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL  160 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK01156 chromosome segregation protein; Provisional

Probab=85.99  E-value=90  Score=40.08  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      ++..+.+...++..++.++..++..+.++..
T Consensus       414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~  444 (895)
T PRK01156        414 INVKLQDISSKVSSLNQRIRALRENLDELSR  444 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566666666666655555443

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=85.91  E-value=39  Score=40.79  Aligned_cols=15  Identities=20%  Similarity=0.182  Sum_probs=8.3

Q ss_pred             HHHHhhhHHHHHHHH
Q 002175          150 VLHVMKSLSALGDVL  164 (956)
Q Consensus       150 a~~INkSL~aLg~VI  164 (956)
                      |.+|-.||..=...|
T Consensus        81 aAkiGqsllk~nk~L   95 (596)
T KOG4360|consen   81 AAKIGQSLLKANKAL   95 (596)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            556666665444444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.61  E-value=65  Score=35.87  Aligned_cols=48  Identities=10%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +..+...++..+..+.....+++.++.....+.+.|-+..-.|+.++.
T Consensus       253 ~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa  300 (312)
T PF00038_consen  253 LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA  300 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            333444444444444444444444444444444444444444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=85.31  E-value=60  Score=39.46  Aligned_cols=38  Identities=18%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+.....+++..+....+...+..+.|..++...+..-
T Consensus       368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~  405 (522)
T PF05701_consen  368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT  405 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555556666666666666666554

Several sequences in this family are described as being myosin heavy chain-like.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.24  E-value=30  Score=37.90  Aligned_cols=57  Identities=14%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ....+.+++.+....++.+.....+.+.+.......+..+.+++..|+.+++++..+
T Consensus        47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   47 ERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555566666666666666666667777777777778888877777666

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.13  E-value=38  Score=44.05  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002175          245 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK  285 (956)
Q Consensus       245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~  285 (956)
                      .+.++..+.....++.+++.++.++............+++.
T Consensus       309 ~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~  349 (1141)
T KOG0018|consen  309 EKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE  349 (1141)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566666666666666655554444444444

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=85.04  E-value=38  Score=32.74  Aligned_cols=56  Identities=13%  Similarity=0.240  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          305 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       305 eek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el  360 (956)
                      ..+.+.....................+....+......+..++.++..++..+...
T Consensus        52 ~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~  107 (126)
T PF13863_consen   52 DKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY  107 (126)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333334444455555555666666666666666555443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.04  E-value=50  Score=38.49  Aligned_cols=26  Identities=12%  Similarity=0.236  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          314 QNAQLRNQVAQLLQLEQEQKMQIQQR  339 (956)
Q Consensus       314 e~~qLq~ql~~l~~~eeElk~qlqe~  339 (956)
                      -+..+...+.++....++.|.+++++
T Consensus       295 ~V~~~t~~L~~IseeLe~vK~emeer  320 (359)
T PF10498_consen  295 GVSERTRELAEISEELEQVKQEMEER  320 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444455555544

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=84.98  E-value=67  Score=35.44  Aligned_cols=115  Identities=16%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          249 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHKIEKEQNAQLRNQVAQL  325 (956)
Q Consensus       249 ~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~e---L~~e~~~Leek~k~~kee~~qLq~ql~~l  325 (956)
                      .++...+..++.+.......|.........+.............|+..   +......+........++...|..++...
T Consensus         8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~   87 (246)
T PF00769_consen    8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA   87 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666666666666665555444444443333333333332   22222333333333455666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ......+....+..+.+...++.++...+..+......
T Consensus        88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~  125 (246)
T PF00769_consen   88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE  125 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777765554443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=84.81  E-value=92  Score=36.93  Aligned_cols=19  Identities=16%  Similarity=0.218  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhhhHHHHHH
Q 002175          284 QKAWKVSFTLQSDLKSENY  302 (956)
Q Consensus       284 q~~~k~~~eLE~eL~~e~~  302 (956)
                      ...|+.+.+|+.+.+..+.
T Consensus       204 N~LwKrmdkLe~ekr~Lq~  222 (552)
T KOG2129|consen  204 NSLWKRMDKLEQEKRYLQK  222 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3466666666665554443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=84.81  E-value=54  Score=38.96  Aligned_cols=42  Identities=12%  Similarity=0.247  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      ++.+++....++........-.+..++.++..++.++.+...
T Consensus       255 ~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~  296 (498)
T TIGR03007       255 RIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS  296 (498)
T ss_pred             HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence            333333333333333333344466667777777777655443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=84.68  E-value=32  Score=40.56  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002175          298 KSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE  354 (956)
Q Consensus       298 ~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeE-lk~qlqe~e~eIe~LqeEik~LE  354 (956)
                      ...+..+.+..+.++.++..|++.+..+.+..+. ......+..+.++..+..+.+||
T Consensus       261 erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  261 ERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445556677777888888898888888776665 34455666777888888888888

Its function is unknown.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=84.24  E-value=47  Score=37.04  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175          303 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV  366 (956)
Q Consensus       303 ~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~  366 (956)
                      .++-+....+.+.++|+.....+....+++...++..++.|--|++++++.+..++.+.+....
T Consensus       240 ~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q  303 (330)
T KOG2991|consen  240 ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQ  303 (330)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666777778887777777778888888888888888888888888777777766554

>PF15294 Leu_zip: Leucine zipper

Probab=84.23  E-value=39  Score=38.06  Aligned_cols=99  Identities=24%  Similarity=0.292  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHK-----IEKEQNAQLRNQVAQ  324 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k-----~~kee~~qLq~ql~~  324 (956)
                      -+..+|.+|+.|++.|+..+.....++.....+-.+.       +.++...+........     ....+...|..++..
T Consensus       129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl-------~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~  201 (278)
T PF15294_consen  129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL-------EAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAA  201 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccccccccccchhhHHHHHHH
Confidence            4678999999999999999999988877665554333       3333333331111111     112233444555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +.   .++...+....+..+.+++.+...+.++-
T Consensus       202 lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL  232 (278)
T PF15294_consen  202 LK---SELEKALQDKESQQKALEETLQSCKHELL  232 (278)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43   23444455555556666666666655543

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.22  E-value=47  Score=33.03  Aligned_cols=27  Identities=11%  Similarity=0.218  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +..++.+.+..+..|...+..|-.||+
T Consensus       103 le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  103 LEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444445555555555555555555543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK11281 hypothetical protein; Provisional

Probab=84.15  E-value=29  Score=45.85  Aligned_cols=15  Identities=20%  Similarity=0.308  Sum_probs=7.5

Q ss_pred             HhhhhhhhHHHHHHH
Q 002175          792 RSALESVDHRRRKVL  806 (956)
Q Consensus       792 ~~~~~~~~~~~~~~~  806 (956)
                      |=|.+..-.||..+.
T Consensus       745 Rla~~ra~~rR~~~~  759 (1113)
T PRK11281        745 RLAYRRALAKRQNLV  759 (1113)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444555555555553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.04  E-value=15  Score=39.58  Aligned_cols=29  Identities=10%  Similarity=0.292  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          244 ARKELYEREKEIQDLKQEILGLRQALKEA  272 (956)
Q Consensus       244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~  272 (956)
                      .+..+..++.++..++.++..+.++.++.
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~  119 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNTWNQR  119 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            44556677778888888888777776654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=84.04  E-value=71  Score=36.53  Aligned_cols=30  Identities=33%  Similarity=0.372  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      ...+++....+.+..+..+.+.+...+...
T Consensus       243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~  272 (423)
T TIGR01843       243 EVLEELTEAQARLAELRERLNKARDRLQRL  272 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555666666666666666665543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK01156 chromosome segregation protein; Provisional

Probab=83.96  E-value=73  Score=40.88  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 002175          340 DSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       340 e~eIe~LqeEik~LE~qL~el  360 (956)
                      ...+..+..++..++.++..+
T Consensus       642 ~~~i~~~~~~i~~l~~~i~~l  662 (895)
T PRK01156        642 KILIEKLRGKIDNYKKQIAEI  662 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.86  E-value=71  Score=34.85  Aligned_cols=25  Identities=40%  Similarity=0.513  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          248 LYEREKEIQDLKQEILGLRQALKEA  272 (956)
Q Consensus       248 l~~~~~eI~~Lq~EI~~Lk~~L~~~  272 (956)
                      +..+...+.+++.+.+.++.++...
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666666655554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.68  E-value=72  Score=34.80  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=7.9

Q ss_pred             cCCCCCCCCchhhhhhH
Q 002175          739 GLGGAVPPSTDALGQLL  755 (956)
Q Consensus       739 ~~~~~~~~~~~~~~~~~  755 (956)
                      |++++.-...|.||-|+
T Consensus       276 ~~~~~~l~~~~~l~nl~  292 (302)
T PF10186_consen  276 GIDVPLLDPRDTLGNLL  292 (302)
T ss_pred             CCCCCcCCchhhHHHHH
Confidence            45555334444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=83.57  E-value=81  Score=35.30  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175          331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS  364 (956)
Q Consensus       331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~  364 (956)
                      .++.++......|..++++|..|+.+++++....
T Consensus       190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~  223 (258)
T PF15397_consen  190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA  223 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3556666667777777777777777777665543

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=83.13  E-value=1e+02  Score=36.23  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHH
Q 002175          332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER  411 (956)
Q Consensus       332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LEr  411 (956)
                      +..-+.-++++|+-|+++|.-|+.+++..++...-                    ....+.++...|--.-.+-+..|.+
T Consensus       510 LEVLLRVKEsEiQYLKqEissLkDELQtalrDKky--------------------aSdKYkDiYtELSiaKakadcdIsr  569 (593)
T KOG4807|consen  510 LEVLLRVKESEIQYLKQEISSLKDELQTALRDKKY--------------------ASDKYKDIYTELSIAKAKADCDISR  569 (593)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--------------------cccchhHHHHHHHHHHHhhhccHHH
Confidence            44455556788889999999999888877665433                    1123444444555444555566777


Q ss_pred             HHHHHHHHHHHhhhh
Q 002175          412 LHEENEKLFDRLTEK  426 (956)
Q Consensus       412 L~eE~ekL~qrL~eK  426 (956)
                      |.+...-.-..|.+|
T Consensus       570 LKEqLkaAteALgEK  584 (593)
T KOG4807|consen  570 LKEQLKAATEALGEK  584 (593)
T ss_pred             HHHHHHHHHHHhccc
Confidence            777777777888888

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=82.84  E-value=51  Score=36.33  Aligned_cols=29  Identities=28%  Similarity=0.314  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          398 LEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       398 LeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+.+-..+...+...+...++...+|...
T Consensus       101 ke~Ea~~lq~el~~ar~~~~~ak~~L~~~  129 (246)
T PF00769_consen  101 KEEEAEELQEELEEAREDEEEAKEELLEV  129 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555556566666666555

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.72  E-value=88  Score=39.23  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             hhHhHHHh-hHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhccccc
Q 002175          865 SKKKAMLT-SLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVA  914 (956)
Q Consensus       865 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  914 (956)
                      +|+-+-|. -+-..+.||.-|=    -|-+-.|-.-|.+|.+|.-.+-|+.
T Consensus       599 ~~ev~qlk~ev~s~ekr~~rlk----~vF~~ki~eFr~ac~sL~Gykid~~  645 (716)
T KOG4593|consen  599 SKEVAQLKKEVESAEKRNQRLK----EVFASKIQEFRDACYSLLGYKIDFT  645 (716)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            44444332 2333444444442    3777788888899988886665554

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=82.60  E-value=1e+02  Score=41.79  Aligned_cols=30  Identities=10%  Similarity=0.152  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      +++.++........+...+.+...++|..-
T Consensus       365 ~~~~~~~~~~~r~~~~~~~l~~~~~el~~~  394 (1353)
T TIGR02680       365 EERRRLDEEAGRLDDAERELRAAREQLARA  394 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=82.51  E-value=1.1e+02  Score=36.28  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175          398 LEEELKKRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       398 LeEELkkree~LErL~eE~ekL~qrL~e  425 (956)
                      .+.++..++...+..+...+.+.+++.+
T Consensus       353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee  380 (498)
T TIGR03007       353 VEAELTQLNRDYEVNKSNYEQLLTRRES  380 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=82.35  E-value=97  Score=35.31  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175          318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH  362 (956)
Q Consensus       318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~  362 (956)
                      |..++..+.....++...+.+.-.+++.+..++..+-....+..+
T Consensus       163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk  207 (294)
T COG1340         163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK  207 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444433333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.19  E-value=15  Score=38.77  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          310 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       310 ~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      ....++......+..+..+...++.+....+.++..++.++..|=....
T Consensus       134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555556666666666666666666554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=81.85  E-value=1.5e+02  Score=37.26  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=20.0

Q ss_pred             ChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Q 002175          390 DSSAVSKKLEEELKK---RDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       390 d~s~l~kkLeEELkk---ree~LErL~eE~ekL~qrL~eK  426 (956)
                      .+..-.+.++.++..   .+....-|..||.++..+|...
T Consensus       279 ~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rw  318 (716)
T KOG4593|consen  279 LLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRW  318 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            333334444443333   3333455667888888777654

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.60  E-value=89  Score=39.95  Aligned_cols=18  Identities=28%  Similarity=0.401  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 002175          409 IERLHEENEKLFDRLTEK  426 (956)
Q Consensus       409 LErL~eE~ekL~qrL~eK  426 (956)
                      |..|..||.+|+--+..|
T Consensus       192 iakLEaEC~rLr~l~rk~  209 (769)
T PF05911_consen  192 IAKLEAECQRLRALVRKK  209 (769)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            566679999998776666

The function of this family is unknown.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=81.28  E-value=58  Score=38.01  Aligned_cols=27  Identities=11%  Similarity=0.144  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQC  276 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~  276 (956)
                      -++.++..++.++...+.++.....++
T Consensus       175 fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       175 WFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445555666666666655555554443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.75  E-value=59  Score=35.55  Aligned_cols=20  Identities=15%  Similarity=0.101  Sum_probs=9.5

Q ss_pred             eEEEeccCcc-ccccCCchhh
Q 002175          478 TVALVKSSSE-KIKTTPAGEY  497 (956)
Q Consensus       478 ~~~~~~~~~~-~~~~~~~~~~  497 (956)
                      .|-++.-|-- .+-.||-|.+
T Consensus       183 ~V~~LrlGr~~l~~~t~Dg~~  203 (251)
T PF11932_consen  183 QVDFLRLGRVALYYQTLDGSQ  203 (251)
T ss_pred             EEEEEeecchhheeECCCccc
Confidence            3344444432 2556666654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=80.70  E-value=1.2e+02  Score=37.06  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             chhHHHHHHHhhhHHHHHHhcCccchhh
Q 002175          537 SREHEILAEIRDAVFAFIRKMEPTRVMD  564 (956)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (956)
                      +|=.|+.+..+.-|...|++.-..-||+
T Consensus       276 ~riee~~~~~~~~~~~~i~~~g~~~~~~  303 (514)
T TIGR03319       276 ARIEEMVEKATKEVDNAIREEGEQAAFD  303 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888888999999999888888887

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=80.53  E-value=75  Score=32.87  Aligned_cols=114  Identities=11%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002175          250 EREKEIQDLKQEILGLRQALKEANDQCVL-LYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKE---QNAQLRNQVAQL  325 (956)
Q Consensus       250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~-l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~ke---e~~qLq~ql~~l  325 (956)
                      ........++..+..+..++.....-... ..-+.+...-....+...+.+.+.++.........   ....++.++..+
T Consensus        10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~   89 (177)
T PF13870_consen   10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL   89 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455555555554444322111 11222222223334445555555554444333322   223333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ......++.++...+..+..+.+++...+.+...+...
T Consensus        90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~  127 (177)
T PF13870_consen   90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQ  127 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555544444443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=80.30  E-value=66  Score=34.76  Aligned_cols=20  Identities=10%  Similarity=0.224  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002175          340 DSTIKTLQAKINSIESQRNE  359 (956)
Q Consensus       340 e~eIe~LqeEik~LE~qL~e  359 (956)
                      ..++..+..++..|+..+..
T Consensus        86 rekl~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   86 REKLGQLEAELAELREELAC  105 (202)
T ss_pred             hhhhhhhHHHHHHHHHHHHh
Confidence            33444444455555544443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=80.30  E-value=1.2e+02  Score=35.01  Aligned_cols=148  Identities=15%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 002175          278 LLYNEVQKAWKVSFTLQSDLKSENYMLADKHK---IEKEQNAQLRNQVAQL--------------LQLEQEQKMQIQQRD  340 (956)
Q Consensus       278 ~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k---~~kee~~qLq~ql~~l--------------~~~eeElk~qlqe~e  340 (956)
                      .+...+++.......|+.++...-.+.++...   .++....+|..++..+              ..+...++.++.+.+
T Consensus       130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q  209 (319)
T PF09789_consen  130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ  209 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666777666554444433322   2344444454443333              333334555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCCC-Cc----------------cccccccccccccChhHHHHHHHHHHH
Q 002175          341 STIKTLQAKINSIESQRNEALHSSEVRSTIRSEP-MP----------------AVSSVLRTTGDGMDSSAVSKKLEEELK  403 (956)
Q Consensus       341 ~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es-~~----------------~s~s~~k~~ee~~d~s~l~kkLeEELk  403 (956)
                      .+...+...+.+++.-++.-.............+ ..                ..-+.+.......|...+.--|-+.+.
T Consensus       210 eE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~in  289 (319)
T PF09789_consen  210 EEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETIN  289 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhh
Confidence            5555555555555554443111111110000001 00                001223333345577777778888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 002175          404 KRDALIERLHEENEKLFDRLTE  425 (956)
Q Consensus       404 kree~LErL~eE~ekL~qrL~e  425 (956)
                      ++.=-|.=++.-|.=|-.|++|
T Consensus       290 dK~~al~Hqr~tNkILg~rv~E  311 (319)
T PF09789_consen  290 DKNLALQHQRKTNKILGNRVAE  311 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666777767666665

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=80.29  E-value=1.4e+02  Score=37.93  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175          318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS  363 (956)
Q Consensus       318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s  363 (956)
                      ++-+++.-..+..-+...+.+++.+|..|++-.+.|+.....++..
T Consensus       513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~d  558 (861)
T PF15254_consen  513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSD  558 (861)
T ss_pred             HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3334444444444477788888888888888888888777666663

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.26  E-value=69  Score=35.18  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          297 LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ  356 (956)
Q Consensus       297 L~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~q  356 (956)
                      |..+.....+.++..+..++.|...+.+.....+..+..+.....++..|.+++.+++.+
T Consensus        44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555556666677777777777777777777777788888888888888877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.17  E-value=29  Score=39.50  Aligned_cols=39  Identities=8%  Similarity=0.105  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175          326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS  364 (956)
Q Consensus       326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~  364 (956)
                      -.....++.++.+.+.+.+.++..+.....++..+.+.+
T Consensus        98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN  136 (314)
T PF04111_consen   98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN  136 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444555566666667777777777777776666653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=80.16  E-value=59  Score=40.43  Aligned_cols=18  Identities=39%  Similarity=0.612  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 002175          409 IERLHEENEKLFDRLTEK  426 (956)
Q Consensus       409 LErL~eE~ekL~qrL~eK  426 (956)
                      ...+.++....+.+|..+
T Consensus       504 ~~~le~~~~~~f~~l~~k  521 (650)
T TIGR03185       504 LQQLEEEITKSFKKLMRK  521 (650)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            455667777777777666

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	956
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		1e-27
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		5e-25
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		6e-25
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-23
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		4e-23
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		7e-23
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		3e-22
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		4e-22
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		5e-22
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		7e-22
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		2e-21
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		2e-21
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-21
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		5e-21
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		5e-21
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		5e-21
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		8e-21
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		1e-20
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		3e-20
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		3e-20
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		4e-20
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		7e-20
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		2e-19
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-18
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-18
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		2e-18
4a28_A	368	Eg5-2 Length = 368		2e-18
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		2e-18
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		2e-18
4a1z_A	368	Eg5-1 Length = 368		2e-18
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		2e-18
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		2e-18
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		3e-18
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		7e-17
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		1e-16
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		2e-16
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-16
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		3e-16
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		1e-15
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		1e-15
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		1e-15
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		1e-15
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		2e-15
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		2e-15
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		3e-15
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		2e-14
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		3e-14
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		5e-14
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		1e-13
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		1e-13
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		3e-12
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-11
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		5e-11
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		5e-11
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		1e-09
3kin_B	117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		7e-09
2kin_B	100	Kinesin (Monomeric) From Rattus Norvegicus Length =		7e-08
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		2e-06

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 9/234 (3%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           MEG++ + G+  R  + LF     +  +   +   V+  E+YNE LR+LL +      +I
Sbjct: 98  MEGTAENPGINQRALQLLFS-EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156
Query: 61  RLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
           RL    S       L + +V +  + +KV +    +R  + +  N     SH ++++ + 
Sbjct: 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             +  TG     KL+LVDLAGSE +      G R+ +  H+ KSLSALGDV+++L SR+ 
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 276
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
            VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L
Sbjct: 277 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLA- 58
           G+  + GL  R   ELF +   D+    +F+F++  +  ELY + L +LL P+    L  
Sbjct: 99  GADSNPGLTPRAMSELFRIMKKDSN---KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155
Query: 59  --KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIY 112
             K   + + S   +    +    E   +++   + R    +  N     SHLI+ + I 
Sbjct: 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE 215
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             NL T      KLS VDLAGSE +     +G ++ +   + KSLSALGDV+S+L+S   
Sbjct: 216 STNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 275
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
            +PY N  LT +++DSLG ++KTLM VNI P  +N+ ET +SL ++SR RS V
Sbjct: 276 HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 328

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 17/235 (7%)
Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLAK 59
           G   + GL  R  +ELF++   D+    RF+F++  +  ELY + L +LL P++   L K
Sbjct: 107 GHESNPGLTPRATKELFNILKRDS---KRFSFSLKAYMVELYQDTLVDLLLPKSARRL-K 162
Query: 60  IRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGND---VSKFNV------SHLIIMIH 110
           + ++     +  V+     P+   + L+   + RG++   VS  N+      SHLI+ + 
Sbjct: 163 LEIKKDSKGMVFVENVTTIPISTLEELRMILE-RGSERRHVSGTNMNEESSRSHLILSVV 221
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           I   +L T      KLS VDLAGSE +     +G ++ +   + KSLSALGDV+ +L+S 
Sbjct: 222 IESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG 281
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
              +PY N  LT +++DSLG ++KTLM VN+ P  +N+ ET +SL ++SR R+ V
Sbjct: 282 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV 336

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 23/236 (9%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAV--TVFELYNEQLREL------LPQ 52
           M G+  + G     F+ LFD  NS   +++  NF V  +  ELYNE++R+L      LP 
Sbjct: 107 MGGNKEEPGAIPNSFKHLFDAINS---SSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPL 163
Query: 53  TGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIM 108
             +    I +  L         +V    E S ++   F +R    ++ N     SH I M
Sbjct: 164 KEDKTRGIYVDGLS------MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFM 217
Query: 109 IHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
           + I  + +I  + +    KL+LVDLAGSE       +GE + +   +  SLSALG V+S 
Sbjct: 218 VRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISK 277
Query: 167 LTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           L      +PY +S LT++L DSLG +SKTLM  NI P + N  ET+S+L ++ RA+
Sbjct: 278 LVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 75  KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 134
           +VD  L+ +  ++S   +R N+ S  + SH + M+HI   NL TGE    KL+LVDLAGS
Sbjct: 194 QVDTILKKASKMRSTAATRSNERS--SRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGS 251
Query: 135 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSMLTKVLADSLGE 191
           E + +   +GER+ +  ++ KSLS LGDV+ +L +    K  +P+ NS LT +L  SL  
Sbjct: 252 ERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVG 311
Query: 192 SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
            SKTLM VNI P+  ++SETL+SL F+S+  ST ++
Sbjct: 312 DSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score =  106 bits (264), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 39/247 (15%)
Query: 1   MEGSSHD----RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGN 55
           M G+S D    RG+  R  E++F  S   + A   +   V+  E+Y E++R+LL PQ  N
Sbjct: 98  MMGTSIDDPDGRGVIPRIVEQIF-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN 156
Query: 56  --------------GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN 101
                         GL +I + S++              E  +V++    +R    +  N
Sbjct: 157 LPVHEEKNRGVYVKGLLEIYVSSVQ--------------EVYEVMRRGGNARAVAATNMN 202
Query: 102 V----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL 157
                SH I +I I   N+ TG     +L LVDLAGSE +     SG+ + +   + KSL
Sbjct: 203 QESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSL 262
Query: 158 SALGDVLSSLTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 216
           SALG V+++LT  K   VPY +S LT++L +SLG +S+T +I+N  P++ N +ETLS+L 
Sbjct: 263 SALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLR 322
Query: 217 FSSRARS 223
           F  RA+S
Sbjct: 323 FGMRAKS 329

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 164 GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S++L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 281
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLSALGDV+ +L    
Sbjct: 282 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD 341
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  HD    G+  R  +++F+   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 95  MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58  A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           +    K R+  ++   E     V +P E    +     +R   V+  N     SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
           ++   N  T + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L  
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
               VPY +S +T++L DSLG + +T +++   P++ N SET S+L F  RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  HD    G+  R  +++F+   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 95  MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58  A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           +    K R+  ++   E     V +P E    +     +R   V+  N     SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
           ++   N  T + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L  
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
               VPY +S +T++L DSLG + +T +++   P++ N SET S+L F  RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  HD    G+  R  +++F+   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 95  MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58  A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           +    K R+  ++   E     V +P E    +     +R   V+  N     SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
           ++   N  T + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L  
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
               VPY +S +T++L DSLG + +T +++   P++ N SET S+L F  RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 140/263 (53%), Gaps = 23/263 (8%)
Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA---- 58
           G S  +G+  R   ++F+   +       F+  V+ +E+Y +++R+LL  +   L+    
Sbjct: 107 GDSVKQGIIPRIVNDIFNHIYA-MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHED 165
Query: 59  KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN 114
           K R+  ++ + E     V +P +  +V++    +R   V+  N     SH + +I++   
Sbjct: 166 KNRVPYVKGATERF---VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQE 222
Query: 115 NLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT-SRKDI 173
           NL   + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L    K  
Sbjct: 223 NLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTH 282
Query: 174 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST--VLSLGNR 231
           +PY +S LT++L +SLG +++T +++   P + N SET S+L+F  RA++   V+ +   
Sbjct: 283 IPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342
Query: 232 DTIKKWRDIANDARKELYEREKE 254
            T ++W        K  YE+EKE
Sbjct: 343 LTAEEW--------KRRYEKEKE 357

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 29/245 (11%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------ 54
           M G++   GL  R    LF+ +  +      F   V+  E+YNE++R+LL   G      
Sbjct: 110 MMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169
Query: 55  -----------NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVS 103
                      +GL+K+ + S +  IE +  + +     +    +   SR + V K  ++
Sbjct: 170 VREHSVLGPYVDGLSKLAVTSYKD-IESLMSEGNKSRTVAATNMNEESSRSHAVFKITLT 228
Query: 104 HLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDV 163
           H +  +     +  +GE +  KLSLVDLAGSE       +G+R+ +  ++ KSL+ LG V
Sbjct: 229 HTLYDV----KSGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLV 283
Query: 164 LSSLT------SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 217
           +S+L       ++   VPY +S+LT +L DSLG +SKT M+  + P A N  ETLS+L +
Sbjct: 284 ISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRY 343
Query: 218 SSRAR 222
           + RA+
Sbjct: 344 ADRAK 348

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S +L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SASHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ +L    
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S +L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ +L    
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 14/222 (6%)
Query: 13  RCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-----PQTGNGLAKIRLQSLES 67
           + F ++ +L     + T R  F     E+YNE + +LL     P T   +    +    +
Sbjct: 494 KIFNDIEELKEKGWSYTVRGKF----IEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTT 549
Query: 68  SIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLY 123
              +    + +P +   +L  A + R    +K N     SH I +I +   N +T E+ Y
Sbjct: 550 VTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSY 609
Query: 124 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYENSMLT 182
             L+L+DLAGSE L      G+R+ +   + KSLS LGDV+ SL  +    VPY NS LT
Sbjct: 610 GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLT 669
Query: 183 KVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224
            +L  SLG +SKTLM VNI P   +++ET++SL F+++  +T
Sbjct: 670 YLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNT 711

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 119 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 178
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S +L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 179 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 236
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ +L    
Sbjct: 237 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 296
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 297 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 107 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 166
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S +L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 167 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 224
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ +L    
Sbjct: 225 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 284
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 285 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---------- 50
           + G    RG+    F+ +F  ++   +   ++    +  E+Y E++R+LL          
Sbjct: 122 IRGDPEKRGVIPNSFDHIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLEL 179
Query: 51  ---PQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLII 107
              P TG     + ++ L S +    +++++ +      +S   +  N+ S  + SH I 
Sbjct: 180 KERPDTG-----VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHS--SRSHAIF 232
Query: 108 MIHIYYNNL-ITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
           +I I  + + + GEN     KL+LVDLAGSE        GER+ +   +  SLSALG+V+
Sbjct: 233 VITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292
Query: 165 SSLTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           S+L   K   +PY +S LT++L DSLG ++KT+M+ N+ P + N+ ETL++L +++RA++
Sbjct: 293 SALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKN 352

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 24/215 (11%)
Query: 32  FNFAVTVFELYNEQLRELL----PQTGNG---------------LAKIRLQSLESSIELV 72
           +  +    E+YNE + +LL    P   N                L    + ++ + +   
Sbjct: 153 YKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDS 212
Query: 73  QEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 132
           ++ VD  L+ +  L+S   +  N+ S  + SH I +IH+   N  TGE     L+LVDLA
Sbjct: 213 RDTVDKVLKRANKLRSTASTAANEHS--SRSHSIFIIHLEGKNEGTGEKSQGILNLVDLA 270
Query: 133 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSMLTKVLADSL 189
           GSE L +    GER+ +   + KSLS LGDV+ +L S   +K  +P+ NS LT +L  SL
Sbjct: 271 GSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSL 330
Query: 190 GESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224
             SSKTLM VNI P A +++ET++SL F+S+  +T
Sbjct: 331 IGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 24/232 (10%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAKIRLQ 63
           GL  R    LF ++   +     ++F  +  E+YNE +R+LL  TG      G  +IR +
Sbjct: 145 GLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL-ATGTRKGQGGECEIR-R 202
Query: 64  SLESSIEL-----------VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIY 112
           +   S EL            +++VD  L  ++  ++  ++  N+ S  + SH +  + I 
Sbjct: 203 AGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS--SRSHSVFQLQIS 260
Query: 113 YNNLITGENLYSKLSLVDLAGSE----GLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
             +   G    + LSLVDLAGSE    GL       ER+ +   +  SLS LG V+ +L+
Sbjct: 261 GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALS 320
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           +++  VPY NS LT +L +SLG S+K LM VNI P   N+SE+L+SL F+S+
Sbjct: 321 NKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 22/238 (9%)
Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
           G+       +F+  N   T    +       E+YNE + +LL    N       GL  +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61  R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
           R          +  +S +L  +E V+  L+ +  L+S   +  N+ S  + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
             +N  TG + Y  L+LVDLAGS  +      G+R+ +  ++ KSLS LGDV+ +L    
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 23/233 (9%)
Query: 7   DRGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--Q 63
           D G+  R    LFD L   +   T R ++     ELYNE+L +LL  + +   KIR+   
Sbjct: 135 DIGIIPRALSHLFDELRMMEVEYTMRISY----LELYNEELCDLL--STDDTTKIRIFDD 188
Query: 64  SLESSIELVQEKVDNPL----EFSKVLKSAFQSRGNDVSKFNV----SHLI--IMIHIYY 113
           S +    ++Q   + P+    +  K+L+   + R    +  N     SH +  I++HI  
Sbjct: 189 STKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRE 248
Query: 114 NNLITGENL--YSKLSLVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           N  I GE++    KL+LVDLAGSE +  A ++ G R+ + +++ +SL  LG V+++L  R
Sbjct: 249 NG-IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR 307
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
              VPY  S LT++L +SLG  +KT +I  I P   ++ ETLS+L ++ RA++
Sbjct: 308 APHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 40/260 (15%)
Query: 1   MEGSSHDRGLYARCFEELFD--LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
           M G+    GL  R  E+LF    S  D T    +N  V+ FE+YNE +R+LL        
Sbjct: 154 MMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKP 213
Query: 59  KIRLQSLESSIE--LVQEKVDNPL----EFSKVLKSAFQSRG------NDVSKFNVSHLI 106
              L+  ES  E   V++  + P+    E  + ++    SR       ND S  + +   
Sbjct: 214 PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273
Query: 107 IMIHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
           IM+   +++L T +     S++ LVDLAGSE   + + +G+R+ +  ++ KSL+ LG V+
Sbjct: 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVI 333
Query: 165 SSLTSRK----------------------DIVPYENSMLTKVLADSLGESSKTLMIVNIC 202
           ++L   K                       +VPY +S+LT +L DSLG +SKT MI  I 
Sbjct: 334 AALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACIS 393
Query: 203 PNAANMSETLSSLNFSSRAR 222
           P   +  ETLS+L ++ +A+
Sbjct: 394 P--TDYDETLSTLRYADQAK 411

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 26/237 (10%)
Query: 7   DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE 66
           ++G+  R   E F L + +       +  V+  E+Y E+ R+LL + G     I+L+  E
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDE 169
Query: 67  -SSIELVQEK---VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI----- 117
             ++ L   K   V+   E   +L+    +R    +  N  HL    H  +   +     
Sbjct: 170 RGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLEQRGR 227
Query: 118 ---------TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
                     G+ L SK   VDLAGSE ++    +GER+ + + +  SL ALG+V+S+L 
Sbjct: 228 APSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALG 287
Query: 169 S---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
               R   +PY +S +T++L DSLG ++KT+MI  + P++++  ETL++LN++SRA+
Sbjct: 288 DPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 133 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 186
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 187 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 246
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 247 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 306
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 307 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 136 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 189
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 190 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 249
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 250 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 309
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 310 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 125 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 178
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 239 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 298
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 299 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9   GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +LL  + +     RLQ  + 
Sbjct: 119 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 172
Query: 68  S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
                   I+ ++E  V N  E  ++L+     R    +  N     SH +  + I+   
Sbjct: 173 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 232
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             I GE L    KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R  
Sbjct: 233 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 292
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 293 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 7   DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE 66
           ++G+  R   E F L + +       +  V+  E+Y E+ R+LL + G     I+L+  E
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDE 169
Query: 67  -SSIELVQEK---VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI----- 117
             ++ L   K   V+   E   +L+    +R    +  N  HL    H  +   +     
Sbjct: 170 RGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLKQRGR 227
Query: 118 ---------TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
                     G+ L SK   VDLAGSE ++    +GE   + + +  SL ALG+V+S+L 
Sbjct: 228 APSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALG 287
Query: 169 S---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
               R   +PY +S +T++L DSLG ++KT+MI  + P++++  ETL++LN++SRA+
Sbjct: 288 DPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL     G  ++R   L  
Sbjct: 132 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 191
Query: 68  SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
               +L +  V +  +   ++ S  ++R    +  N     SH +  I      H    N
Sbjct: 192 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 251
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
           + T +   SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG V+S+L        
Sbjct: 252 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 309
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
                 + D +PY +S+LT +L ++LG +S+T M+  + P   N  ETLS+L ++ RA+
Sbjct: 310 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 368

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL     G  ++R   L  
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68  SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
               +L +  V +  +   ++ S  ++R    +  N     SH +  I      H    N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
           + T +   SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG V+S+L        
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
                 + D +PY +S+LT +L ++LG +S+T M+  + P   N  ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL     G  ++R   L  
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68  SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
               +L +  V +  +   ++ S  ++R    +  N     SH +  I      H    N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
           + T +   SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG V+S+L        
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
                 + D +PY +S+LT +L ++LG +S+T M+  + P   N  ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 26/239 (10%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
           +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL     G  ++R   L  
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68  SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
               +L +  V +  +   ++ S  + R    +  N     SH +  I      H    N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
           + T +   SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG V+S+L        
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
                 + D +PY +S+LT +L ++LG +S+T M+  + P   N  ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELL-PQTGNGL 57
           M GS    G+  R   +L  L+  +      +  +VT+   E+Y E++ +LL P +G+ +
Sbjct: 116 MLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175
Query: 58  AKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI-Y 112
            +   +       L Q+ + +  +F +    A ++R    ++ N     SH ++++ +  
Sbjct: 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ 235
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
              L        KL L+DLAGSE      + G R+ +   +  SL  LG V+ +L     
Sbjct: 236 RERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP 295
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
            VPY +S LT++L DSLG S+ +++I NI P      +T+S+LNF++R++  +
Sbjct: 296 RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVI 348

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      + +I
Sbjct: 153 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 211
Query: 61  RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
           R+ ++ ++ I    + +E V +P     ++ +A  +R      GN+ S  + SH +  + 
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 269
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 270 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNIKRSLSELTNVILALLQK 325
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  ++   
Sbjct: 326 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 385
Query: 231 RD 232
           R+
Sbjct: 386 RN 387

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 35  AVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRG 94
           AV+  E+YNEQ+R+LL  +G    +   Q       L   +  +  E   +L +  ++R 
Sbjct: 156 AVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRT 215
Query: 95  NDVSKFNV----SHLIIMIHIYYNNLITGENL---YSKLSLVDLAGSEGLIAEDDSGERI 147
              +  N     SH +  I++   +     N     +K+SL+DLAGSE        G R 
Sbjct: 216 QHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRF 275
Query: 148 TDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 204
            +  ++ +SL ALG+V+++L   K     +PY NS LT++L DSLG + +T+MI  + P+
Sbjct: 276 VEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPS 335
Query: 205 AANMSETLSSLNFSSRAR 222
           +    +T ++L +++RA+
Sbjct: 336 SVFYDDTYNTLKYANRAK 353

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      + +I
Sbjct: 164 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 222
Query: 61  RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
           R+ ++ ++ I    + +E V +P     ++ +A  +R      GN+ S  + SH +  + 
Sbjct: 223 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 280
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 281 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 336
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  ++   
Sbjct: 337 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 396
Query: 231 RD 232
           R+
Sbjct: 397 RN 398

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      + +I
Sbjct: 150 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 208
Query: 61  RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
           R+ ++ ++ I    + +E V +P     ++ +A  +R      GN+ S  + SH +  + 
Sbjct: 209 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 266
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 267 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 322
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  ++   
Sbjct: 323 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 382
Query: 231 RD 232
           R+
Sbjct: 383 RN 384

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      + +I
Sbjct: 156 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 214
Query: 61  RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
           R+ ++ ++ I    + +E V +P     ++ +A  +R      GN+ S  + SH +  + 
Sbjct: 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 272
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 273 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 328
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  ++   
Sbjct: 329 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 388
Query: 231 RD 232
           R+
Sbjct: 389 RN 390

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 17/237 (7%)
Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      + +I
Sbjct: 153 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 211
Query: 61  RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
           R+ ++ ++ I    + +E V +P     ++ +A  +R      GN+ S  + SH +  + 
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 269
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 270 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 325
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  ++
Sbjct: 326 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTGNGLAKIRLQS 64
           RG+  R  +++F +   +   T      V+  E+YNE L +LL   P  G  +  + +  
Sbjct: 132 RGILPRALQQVFRMI--EERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVE 189
Query: 65  LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV-------SHLIIMIHIYYNNLI 117
               + +    V    +        F+   N +   +        SH I  I++  ++  
Sbjct: 190 NPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249
Query: 118 TGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIV 174
             E  Y  SK++LVDLAGSE L      G+ + +  ++ KSLS L   + +L  +K D +
Sbjct: 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI 309
Query: 175 PYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           P+    LT  L DSLG +   +++ NI   AA + ETLSSL F+SR +
Sbjct: 310 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 23/227 (10%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR-LQSLE 66
           +G+YA    ++F L N            VT FE+YN +L +LL    N  AK+R L+  +
Sbjct: 165 KGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKLRVLEDGK 220
Query: 67  SSIELV--QEKVDNPLEFSKVLK-----SAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 119
             +++V  QE + N  +   V+K     SA ++ G   +  N S      H  +  ++  
Sbjct: 221 QQVQVVGLQEHLVNSAD--DVIKMIDMGSACRTSGQTFANSNSSR----SHACFQIILRA 274
Query: 120 EN-LYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIVPY 176
           +  ++ K SLVDLAG+E   A+  S +R T +    + KSL AL + + +L   K   P+
Sbjct: 275 KGRMHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPF 333
Query: 177 ENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
             S LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R +
Sbjct: 334 RESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 1   MEGSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
           + G S +  +G+YA    ++F L N            VT FE+YN ++ +LL    N  A
Sbjct: 176 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKA 231
Query: 59  KIRLQSLESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 109
           K+R+  LE S + VQ            D+ ++    + SA ++ G   +  N S      
Sbjct: 232 KLRV--LEDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACF 288
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSL 167
            I    L T   L+ K SLVDLAG+E   A+  S +R T +    + KSL AL + + +L
Sbjct: 289 QIL---LRTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 168 TSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
              K   P+  S LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R +
Sbjct: 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 50/257 (19%)
Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTG 54
           RG+    FE +F  ++   +   ++    +  E+Y E++R+LL             P+TG
Sbjct: 129 RGVIPNAFEHIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETG 186
Query: 55  NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYN 114
                + ++ L S +    +++++ +      ++   +  N+VS  + SH I +I +  +
Sbjct: 187 -----VYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVS--SRSHAIFIITVECS 239
Query: 115 NLIT-GENL--YSKLSLVDLAGSE--GLIAEDDSG----------------------ERI 147
              + G++     KL+LVDLAGSE       + +G                      ER 
Sbjct: 240 ERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERP 299
Query: 148 TDVLHVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAA 206
            +   +  SLSALG+V+++L  +R   +PY +S LT++L DSLG ++KT+M+  + P + 
Sbjct: 300 KEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASH 359
Query: 207 NMSETLSSLNFSSRARS 223
           +  E+LS+L F++RA++
Sbjct: 360 SYDESLSTLRFANRAKN 376

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 1   MEGSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
           + G S +  +G+YA    ++F L N            VT FE+YN ++ +LL    N  A
Sbjct: 104 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKA 159
Query: 59  KIRLQSLESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 109
           K+R+  LE S + VQ            D+ ++    + SA ++ G   +  N S      
Sbjct: 160 KLRV--LEDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACF 216
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSL 167
            I    L T   L+ K SLVDLAG+E   A+  S +R T +    + KSL AL + + +L
Sbjct: 217 QIL---LRTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRAL 272
Query: 168 TSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
              K   P+  S LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R +
Sbjct: 273 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 3   GSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           G + D  +G+YA    ++F +               T FE+Y+ ++ +LL +      K 
Sbjct: 196 GKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR------KT 249
Query: 61  RLQSLESSIELVQ------------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIM 108
           +L+ LE   + VQ            E V   ++     +++ Q+  N  S  + SH +  
Sbjct: 250 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHS--SRSHAVFQ 307
Query: 109 IHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSS 166
           I +          L+ K SL+DLAG+E   A+  S +R T +    + KSL AL + + +
Sbjct: 308 IILRRKG-----KLHGKFSLIDLAGNE-RGADTSSADRQTRLEGAEINKSLLALKECIRA 361
Query: 167 LTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           L   K   P+  S LT+VL DS +GE+S+T MI  I P  A+   TL++L +++R +
Sbjct: 362 LGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Query: 37  TVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGN 95
           +  E+YNE+  +LL  T +  +   R Q         Q  + + LE     +    +  N
Sbjct: 155 SFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 96  DVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
             S  + SH I+ IH+        +  +S++++VDLAGSEG+      G    + +++  
Sbjct: 215 --SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 156 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
            L ++  V+ S+ +   ++PY +S+LT VL  SL   S    +  I P+  ++SETLS+L
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 216 NFSSRARSTVL 226
            F + A++  L
Sbjct: 327 RFGTSAKAAAL 337

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 3   GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------NG 56
           G S   G++     ++F   N       +  F ++ +E+Y  +L +LL +        NG
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIF-ISFYEIYCGKLYDLLQKRKMVAALENG 167
Query: 57  LAKIRLQSLE-----SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
             ++ ++ L+     +  EL+ + +D  L    + K    S+ ++ S+   SH I+ I +
Sbjct: 168 KKEVVVKDLKILRVLTKEELILKMIDGVL----LRKIGVNSQNDESSR---SHAILNIDL 220
Query: 112 YYNNLITGENLYSKLSLVDLAGSE-GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
                I       K++ +DLAGSE G      + +  TD  ++ +SL AL + + ++ S 
Sbjct: 221 ---KDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD 277
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           K+ +P+ +S LTKVL D     SK++MI NI P  +   +TL++L +SSR ++
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 37  TVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGN 95
           +  E+YNE+  +LL  T +  +   R Q         Q  + + LE     +    +  N
Sbjct: 155 SFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 96  DVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
             S  + SH I+ IH+        +  +S++++VDLAGSEG+      G    + +++  
Sbjct: 215 --SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 156 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
            L ++  V+ S+ +   ++PY +S+LT VL  SL   S    +  I P+  ++SETLS+L
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 216 NFSSRAR 222
            F + A+
Sbjct: 327 RFGTSAK 333

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 124 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSML 181
           S L+LVDLAGSE       +G R+ +  ++ +SL  LG V+  L+  +    + Y +S L
Sbjct: 228 SHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKL 287
Query: 182 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           T++L +SLG ++KT +I  I P   +  ETL++L F+S A+
Sbjct: 288 TRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAK 326

>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 155 KSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 213
           KSLSALG+V+S+L    K  VPY +S +T++L DSLG + +T +++   P+  N +ET S
Sbjct: 2   KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKS 61
Query: 214 SLNFSSRARS 223
           +L F  RA++
Sbjct: 62  TLMFGQRAKT 71

>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 152 HVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 210
           ++ KSLSALG+V+S+L    K  VPY +S +T++L DSL  + +T +++   P+  N +E
Sbjct: 3   NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 211 TLSSLNFSSRARS 223
           T S+L F  RA++
Sbjct: 63  TKSTLMFGQRAKT 75

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  HD    G+  R   ++FD   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 95  MEGKLHDPQLMGIIPRIAHDIFDHIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58  A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           A    K R+  ++   E     V +P E   V+     +R   V+  N     SH I +I
Sbjct: 154 AVHEDKNRVPYVKGCTERF---VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSE 135
           +I   N+ T + L  KL LVDLAGSE
Sbjct: 211 NIKQENVETEKKLSGKLYLVDLAGSE 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	956
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	5e-58
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	2e-55
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	7e-54
3u06_A	412	Protein claret segregational; motor domain, stalk	1e-53
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	3e-52
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	1e-51
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-50
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	3e-45
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	2e-43
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	8e-42
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	2e-41
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	1e-40
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	7e-40
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	1e-39
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	2e-39
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	3e-37
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	3e-37
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	3e-36
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	5e-36
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	9e-36
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	1e-35
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	3e-35
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	5e-35
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-34
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	3e-34
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	6e-34
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	2e-22
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	9e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	2e-04

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  202 bits (517), Expect = 5e-58
 Identities = 85/283 (30%), Positives = 133/283 (46%), Gaps = 27/283 (9%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           + G+  + GL  R   ELF +   D+     F+    + ELY + L +LL        K+
Sbjct: 97  IYGADSNPGLTPRAMSELFRIMKKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155

Query: 61  RL-QSLESSIE---LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
            + +  +  +    +    +    E   +++   + R    +  N     SHLI+ + I 
Sbjct: 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE 215

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             NL T      KLS VDLAGSE +     +G ++ +   + KSLSALGDV+S+L+S   
Sbjct: 216 STNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 275

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
            +PY N  LT +++DSLG ++KTLM VNI P  +N+ ET +SL ++SR RS         
Sbjct: 276 HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRS--------- 326

Query: 233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 275
                  I ND  K      KE+  LK+ +   ++      D 
Sbjct: 327 -------IVNDPSKN--VSSKEVARLKKLVSYWKEQAGRKGDD 360

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  193 bits (494), Expect = 2e-55
 Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 9/234 (3%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           MEG++ + G+  R  + LF       +    +   V+  E+YNE LR+LL +      +I
Sbjct: 98  MEGTAENPGINQRALQLLFSEVQEKAS-DWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156

Query: 61  RLQSLESSI----ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
           RL    S       L + +V +  + +KV +    +R  + +  N     SH ++++ + 
Sbjct: 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             +  TG     KL+LVDLAGSE +      G R+ +  H+ KSLSALGDV+++L SR+ 
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 276

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
            VP+ NS LT +L DSL   SKTLM+V + P   N SETL SL F+ R RS  L
Sbjct: 277 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  191 bits (487), Expect = 7e-54
 Identities = 74/243 (30%), Positives = 108/243 (44%), Gaps = 20/243 (8%)

Query: 1   MEGSSHD----RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 56
           MEG         GL  R    LF ++   +     ++F  +  E+YNE +R+LL      
Sbjct: 133 MEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRK 192

Query: 57  LAKIRLQSLESSIE--------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SH 104
                 +   +                V    E   +L  A Q+R    +  N     SH
Sbjct: 193 GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSH 252

Query: 105 LIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL----HVMKSLSAL 160
            +  + I   +   G    + LSLVDLAGSE L      G    + L     +  SLS L
Sbjct: 253 SVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTL 312

Query: 161 GDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           G V+ +L++++  VPY NS LT +L +SLG S+K LM VNI P   N+SE+L+SL F+S+
Sbjct: 313 GLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372

Query: 221 ARS 223
              
Sbjct: 373 VNQ 375

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  192 bits (489), Expect = 1e-53
 Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL    N    +
Sbjct: 156 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---SNEQKDM 212

Query: 61  RLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIH 110
            ++  +++        + +E V +P     ++ +A  +R    +  N     SH +  + 
Sbjct: 213 EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLE 272

Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  +
Sbjct: 273 LIGRHAEKQEISVGSINLVDLAGSESP----KTSTRMTETKNINRSLSELTNVILALLQK 328

Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           +D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  +
Sbjct: 329 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 384

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  185 bits (473), Expect = 3e-52
 Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 22/246 (8%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGLAK 59
           M  +    G+       +F  + +       +       E+YNE + +LL     +    
Sbjct: 103 MLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160

Query: 60  IRLQSLESSIE------------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----S 103
             L S +  I             + + K+ +  +   +LK A + R    ++ N     S
Sbjct: 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRS 220

Query: 104 HLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDV 163
           H + M+HI   NL TGE    KL+LVDLAGSE + +   +GER+ +  ++ KSLS LGDV
Sbjct: 221 HSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDV 280

Query: 164 LSSLTSRKDI---VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           + +L +       +P+ NS LT +L  SL   SKTLM VNI P+  ++SETL+SL F+S+
Sbjct: 281 IYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340

Query: 221 ARSTVL 226
             ST +
Sbjct: 341 VNSTKI 346

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  184 bits (469), Expect = 1e-51
 Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL----PQTGNG 56
           M       G+       +F+  N   T    +       E+YNE + +LL        + 
Sbjct: 102 MLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT 159

Query: 57  LAKIRLQSLESSIE-------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHL 105
              ++ +              +   K+++      +LK A + R    +  N     SH 
Sbjct: 160 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHS 219

Query: 106 IIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
           I +IH+  +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ 
Sbjct: 220 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 279

Query: 166 SLT---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +L    S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  
Sbjct: 280 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN 339

Query: 223 STVL 226
           ST L
Sbjct: 340 STRL 343

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  182 bits (465), Expect = 1e-50
 Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 20/244 (8%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL----PQTGNG 56
           M       G+       +F+  N   T    +       E+YNE + +LL        + 
Sbjct: 158 MLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT 215

Query: 57  LAKIRLQSLESSIE-------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHL 105
              ++ +              +   K+++      +LK A + R    +  N     SH 
Sbjct: 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 275

Query: 106 IIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
           I +IH+  +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLSALGDV+ 
Sbjct: 276 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIH 335

Query: 166 SLT---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +L    S K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  
Sbjct: 336 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN 395

Query: 223 STVL 226
           ST L
Sbjct: 396 STRL 399

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  165 bits (419), Expect = 3e-45
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 13/233 (5%)

Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  HD    G+  R  +++F+   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 95  MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153

Query: 58  AKIRLQSLESSI---ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIH 110
             +  +            +  V +P E    +     +R   V+  N     SH I +I+
Sbjct: 154 -SVH-EDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN 211

Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
           +   N  T + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L   
Sbjct: 212 VKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG 271

Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
              VPY +S +T++L DSLG + +T +++   P++ N SET S+L F  RA++
Sbjct: 272 STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  161 bits (410), Expect = 2e-43
 Identities = 69/283 (24%), Positives = 121/283 (42%), Gaps = 36/283 (12%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELL-PQTGNGL 57
           M GS    G+  R   +L  L+  +      +  +VT+   E+Y E++ +LL P +G+  
Sbjct: 116 MLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGD-- 173

Query: 58  AKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
               L   E          L Q+ + +  +F +    A ++R    ++ N     SH ++
Sbjct: 174 ----LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVL 229

Query: 108 MIHIYY-NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
           ++ +     L        KL L+DLAGSE      + G R+ +   +  SL  LG V+ +
Sbjct: 230 LVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDA 289

Query: 167 LTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
           L      VPY +S LT++L DSLG S+ +++I NI P      +T+S+LNF++R++    
Sbjct: 290 LNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKE--- 346

Query: 227 SLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 269
                        + N        +   +  +K     L    
Sbjct: 347 -------------VINRPFTNESLQPHALGPVKLSQKELLGPP 376

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  154 bits (392), Expect = 2e-41
 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 19/235 (8%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M G+  + G     F+ LFD + + +++   F    +  ELYNE++R+L+         +
Sbjct: 107 MGGNKEEPGAIPNSFKHLFD-AINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK--LPL 163

Query: 61  RLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIH 110
           +    E          L   +V    E S ++   F +R    ++ N     SH I M+ 
Sbjct: 164 K----EDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVR 219

Query: 111 IYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
           I  + +I  + +    KL+LVDLAGSE       +GE + +   +  SLSALG V+S L 
Sbjct: 220 IECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLV 279

Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
                +PY +S LT++L DSLG +SKTLM  NI P + N  ET+S+L ++ RA+ 
Sbjct: 280 EGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQ 334

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  153 bits (388), Expect = 1e-40
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 27/276 (9%)

Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG   D   +G+  R   ++F+   +       F+  V+ +E+Y +++R+LL  +   L
Sbjct: 102 MEGVIGDSVKQGIIPRIVNDIFNHIYA-MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNL 160

Query: 58  AKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
             +     E            +  V +P +  +V++    +R   V+  N     SH + 
Sbjct: 161 -SVH----EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVF 215

Query: 108 MIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSL 167
           +I++   NL   + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L
Sbjct: 216 LINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISAL 275

Query: 168 TSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
                  +PY +S LT++L +SLG +++T +++   P + N SET S+L+F  RA++   
Sbjct: 276 ADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK- 334

Query: 227 SLGNRDTIKKWRDIANDARKELYEREKE-IQDLKQE 261
              N   +    ++  +  K  YE+EKE    LK +
Sbjct: 335 ---NVVCVN--EELTAEEWKRRYEKEKEKNARLKGK 365

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  150 bits (381), Expect = 7e-40
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 27/269 (10%)

Query: 1   MEGSSHD----RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 56
           M G+S D    RG+  R  E++F    S + A   +   V+  E+Y E++R+LL    + 
Sbjct: 98  MMGTSIDDPDGRGVIPRIVEQIFTSILS-SAANIEYTVRVSYMEIYMERIRDLLAPQNDN 156

Query: 57  LAKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLI 106
           L  +     E          L++  V +  E  +V++    +R    +  N     SH I
Sbjct: 157 L-PVH----EEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSI 211

Query: 107 IMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
            +I I   N+ TG     +L LVDLAGSE +     SG+ + +   + KSLSALG V+++
Sbjct: 212 FVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINA 271

Query: 167 LTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
           LT  K   VPY +S LT++L +SLG +S+T +I+N  P++ N +ETLS+L F  RA+S  
Sbjct: 272 LTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331

Query: 226 LSLGNRDTIKKWRDIANDARKELYEREKE 254
               N+  +    +++    K++  + K 
Sbjct: 332 ----NKAKVN--AELSPAELKQMLAKAKT 354

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  149 bits (379), Expect = 1e-39
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 24/235 (10%)

Query: 1   MEGSSHD------RGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELL-PQ 52
           M  +          G+  R   ++F+ ++              +  E+YNE+  +LL   
Sbjct: 112 MGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST 171

Query: 53  TGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIM 108
               +   R Q            + +  +   +L+   ++R    +  N     SH I+ 
Sbjct: 172 PHMPMVAARCQRCTC------LPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVT 225

Query: 109 IHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
           IH+        +  +S++++VDLAGSEG+      G    + +++   L ++  V+ S+ 
Sbjct: 226 IHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMA 279

Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           +   ++PY +S+LT VL  SL   S    +  I P+  ++SETLS+L F + A++
Sbjct: 280 AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKA 334

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  149 bits (378), Expect = 2e-39
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 29/246 (11%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGLAK 59
           M G++   GL  R    LF+ +  +      F   V+  E+YNE++R+LL P+      K
Sbjct: 110 MMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169

Query: 60  IRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNVSHLII 107
           +R    E S+       L +  V +  +   ++    +SR       N+ S  + SH + 
Sbjct: 170 VR----EHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEES--SRSHAVF 223

Query: 108 MIHI--YYNNLITGEN--LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDV 163
            I +     ++ +G +     KLSLVDLAGSE       +G+R+ +  ++ KSL+ LG V
Sbjct: 224 KITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLV 283

Query: 164 LSSLT------SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 217
           +S+L       ++   VPY +S+LT +L DSLG +SKT M+  + P A N  ETLS+L +
Sbjct: 284 ISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRY 343

Query: 218 SSRARS 223
           + RA+ 
Sbjct: 344 ADRAKH 349

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  143 bits (362), Expect = 3e-37
 Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 27/241 (11%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M GS+ + G+       L+     +       + AV+  E+YNEQ+R+LL  +G     +
Sbjct: 123 MLGSADEPGVMYLTMLHLYK-CMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP--LAV 179

Query: 61  RLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNVSHLIIM 108
           R    E + +      L   +  +  E   +L +  ++R       N  S  + SH +  
Sbjct: 180 R----EDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATS--SRSHAVFQ 233

Query: 109 IHI---YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLS 165
           I++        I      +K+SL+DLAGSE        G R  +  ++ +SL ALG+V++
Sbjct: 234 IYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVIN 293

Query: 166 SLT---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
           +L     +   +PY NS LT++L DSLG + +T+MI  + P++    +T ++L +++RA+
Sbjct: 294 ALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAK 353

Query: 223 S 223
            
Sbjct: 354 D 354

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  143 bits (362), Expect = 3e-37
 Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 38/254 (14%)

Query: 1   MEGSSH--DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGL 57
           M G      +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL P+    L
Sbjct: 107 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL 166

Query: 58  AKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNVSHL 105
            ++R    E  +       L +  V +  +   ++ S  + R       N+ S  + SH 
Sbjct: 167 -RVR----EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETS--SRSHA 219

Query: 106 IIMIHIYYNNLITGENLY----SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALG 161
           +  I           N+     SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG
Sbjct: 220 VFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLG 279

Query: 162 DVLSSLT------------SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 209
            V+S+L              + D +PY +S+LT +L ++LG +S+T M+  + P   N  
Sbjct: 280 KVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYD 339

Query: 210 ETLSSLNFSSRARS 223
           ETLS+L ++ RA+ 
Sbjct: 340 ETLSTLRYADRAKQ 353

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  140 bits (354), Expect = 3e-36
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 29/248 (11%)

Query: 1   MEGSSHD-----------RGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRE 48
           MEG                G+  R   ++F+ L+++ T     F+  V++ E+YNE+L +
Sbjct: 106 MEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFD 161

Query: 49  LLPQTGNGLAKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV 102
           LL  + +   ++++     +        L +  V N  E  ++L+     R    +  N 
Sbjct: 162 LLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 221

Query: 103 ----SHLIIMIHIY-YNNLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
               SH +  + I+     I GE L    KL+LVDLAGSE +       +R  +  ++ +
Sbjct: 222 YSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQ 281

Query: 156 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
           SL  LG V+++L  R   VPY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L
Sbjct: 282 SLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTL 341

Query: 216 NFSSRARS 223
            ++ RA++
Sbjct: 342 EYAHRAKN 349

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  141 bits (357), Expect = 5e-36
 Identities = 84/302 (27%), Positives = 132/302 (43%), Gaps = 56/302 (18%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELLPQTGNGLA 58
           M G+    GL  R  E+LF    S    T   ++ V V  FE+YNE +R+LL        
Sbjct: 154 MMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKP 213

Query: 59  KIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNVSHLI 106
              L+  ES  E      L +  V    E  + ++    SR       ND S  + SH +
Sbjct: 214 PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTS--SRSHAV 271

Query: 107 IMIHI--YYNNLITGEN--LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGD 162
             I +   +++L T +     S++ LVDLAGSE   + + +G+R+ +  ++ KSL+ LG 
Sbjct: 272 FTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGR 331

Query: 163 VLSSLT----------------------SRKDIVPYENSMLTKVLADSLGESSKTLMIVN 200
           V+++L                           +VPY +S+LT +L DSLG +SKT MI  
Sbjct: 332 VIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIAC 391

Query: 201 ICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIAN-DARKELYEREKEIQDLK 259
           I P   +  ETLS+L ++ +A+        R  +       N        ER+ +I  + 
Sbjct: 392 ISP--TDYDETLSTLRYADQAKRIR----TRAVV-------NQVDGVSAAERDAQIPSIV 438

Query: 260 QE 261
             
Sbjct: 439 HR 440

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  138 bits (350), Expect = 9e-36
 Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 26/239 (10%)

Query: 1   MEGS-----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 55
           M GS     S   G++     ++F   N            ++ +E+Y  +L +LL +   
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNI-YDKDNTKGIFISFYEIYCGKLYDLLQKRKM 160

Query: 56  GLAKIRLQSLESSIELVQ------EKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHL 105
                 + +LE+  + V        +V    E    +      R   V+  N     SH 
Sbjct: 161 ------VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHA 214

Query: 106 IIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI-TDVLHVMKSLSALGDVL 164
           I+ I +   N         K++ +DLAGSE         ++  TD  ++ +SL AL + +
Sbjct: 215 ILNIDLKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECI 271

Query: 165 SSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            ++ S K+ +P+ +S LTKVL D     SK++MI NI P  +   +TL++L +SSR ++
Sbjct: 272 RAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  138 bits (350), Expect = 1e-35
 Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 25/238 (10%)

Query: 3   GSSHDRGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 61
               D G+  R    LFD L   +      +   ++  ELYNE+L +LL        +I 
Sbjct: 131 EDDSDIGIIPRALSHLFDELRMMEV----EYTMRISYLELYNEELCDLLSTDDTTKIRIF 186

Query: 62  LQSLESSIELVQ----EKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY- 112
             S +    ++Q      V +  +  K+L+   + R    +  N     SH +  I ++ 
Sbjct: 187 DDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI 246

Query: 113 YNNLITGENLY--SKLSLVDLAGSE-----GLIAEDDSGERITDVLHVMKSLSALGDVLS 165
             N I GE++    KL+LVDLAGSE     G       G R+ + +++ +SL  LG V++
Sbjct: 247 RENGIEGEDMLKIGKLNLVDLAGSENVSKAGNE----KGIRVRETVNINQSLLTLGRVIT 302

Query: 166 SLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           +L  R   VPY  S LT++L +SLG  +KT +I  I P   ++ ETLS+L ++ RA++
Sbjct: 303 ALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  137 bits (348), Expect = 3e-35
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 23/240 (9%)

Query: 1   MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG   D   RG+    F+ +F   +       ++    +  E+Y E++R+LL +     
Sbjct: 119 MEGIRGDPEKRGVIPNSFDHIFTHISRSQNQ--QYLVRASYLEIYQEEIRDLLSKDQTKR 176

Query: 58  AKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLII 107
            +++    E          L      +  E   V+    Q+R    +  N     SH I 
Sbjct: 177 LELK----ERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIF 232

Query: 108 MIHIYYNNL-ITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
           +I I  + + + GEN     KL+LVDLAGSE        GER+ +   +  SLSALG+V+
Sbjct: 233 VITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292

Query: 165 SSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           S+L   +   +PY +S LT++L DSLG ++KT+M+ N+ P + N+ ETL++L +++RA++
Sbjct: 293 SALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKN 352

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  136 bits (344), Expect = 5e-35
 Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 26/241 (10%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGNGLAK 59
           M GS    G+  R   ++F            F   V+  E+YNE + +LL          
Sbjct: 95  MMGSEDHLGVIPRAIHDIFQKIKK--FPDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152

Query: 60  IRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
           IR    E          L +E V       K +    +SR    +K N     SH I  +
Sbjct: 153 IR----EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRM 208

Query: 110 HIYYNNLITGEN-----LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
            +         N       S L+LVDLAGSE       +G R+ +  ++ +SL  LG V+
Sbjct: 209 ILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVI 268

Query: 165 SSLTSRKDI--VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
             L+  +    + Y +S LT++L +SLG ++KT +I  I P   +  ETL++L F+S A+
Sbjct: 269 KKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAK 326

Query: 223 S 223
            
Sbjct: 327 Y 327

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  135 bits (343), Expect = 1e-34
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 33/243 (13%)

Query: 1   MEG------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 54
           M G       +  +G+YA    ++F L N            VT FE+YN +L +LL    
Sbjct: 152 MGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL---- 207

Query: 55  NGLAKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNV 102
           N  AK+R+  LE   +      L +  V++  +  K++      R       N  S  + 
Sbjct: 208 NKKAKLRV--LEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNS--SR 263

Query: 103 SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI-TDVLHVMKSLSALG 161
           SH    I +          ++ K SLVDLAG+E       +  +   +   + KSL AL 
Sbjct: 264 SHACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALK 318

Query: 162 DVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           + + +L   K   P+  S LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R
Sbjct: 319 ECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADR 378

Query: 221 ARS 223
            + 
Sbjct: 379 VKE 381

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  133 bits (338), Expect = 3e-34
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 34/250 (13%)

Query: 1   MEGSSHD------RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQT 53
           M  +S        +G+  R   E F     D          V+  E+Y E+ R+LL   T
Sbjct: 101 MGEASVASLLEDEQGIVPRAMAEAFK--LIDENDLLDCLVHVSYLEVYKEEFRDLLEVGT 158

Query: 54  GNGLAKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----S 103
            +   ++R    E          + +  V+   E   +L+    +R    +  N     S
Sbjct: 159 ASRDIQLR----EDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRS 214

Query: 104 HLIIMIHIY--------YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
           H +  + +               G+ L SK   VDLAGSE ++    +GER+ + + +  
Sbjct: 215 HTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINS 274

Query: 156 SLSALGDVLSSLT---SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 212
           SL ALG+V+S+L     R   +PY +S +T++L DSLG ++KT+MI  + P++++  ETL
Sbjct: 275 SLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334

Query: 213 SSLNFSSRAR 222
           ++LN++SRA+
Sbjct: 335 NTLNYASRAQ 344

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  134 bits (339), Expect = 6e-34
 Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 33/243 (13%)

Query: 1   MEG------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 54
           M G       +  +G+YA    ++F L N            VT FE+YN ++ +LL +  
Sbjct: 172 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-- 229

Query: 55  NGLAKIRLQSLESSIE------LVQEKVDNPLEFSKVLKSAFQSRG------NDVSKFNV 102
               K +L+ LE S +      L +  V    +  K++      R       N  S  + 
Sbjct: 230 ----KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS--SR 283

Query: 103 SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI-TDVLHVMKSLSALG 161
           SH    I +          L+ K SLVDLAG+E       +  +   +   + KSL AL 
Sbjct: 284 SHACFQILLRTK-----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALK 338

Query: 162 DVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
           + + +L   K   P+  S LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R
Sbjct: 339 ECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 398

Query: 221 ARS 223
            + 
Sbjct: 399 VKE 401

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 155 KSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 213
           KSLSALG+V+S+L    K  VPY +S +T++L DSLG + +T +++   P+  N +ET S
Sbjct: 2   KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKS 61

Query: 214 SLNFSSRARS--TVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLR 266
           +L F  RA++    +S+    T ++W+      +++    +  IQ L+ E+   R
Sbjct: 62  TLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score = 87.0 bits (216), Expect = 9e-21
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 7/101 (6%)

Query: 155 KSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 213
           KSLSALG+V+S+L    K  VPY +S +T++L DSL  + +T +++   P+  N +ET S
Sbjct: 6   KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKS 65

Query: 214 SLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKE 254
           +L F  RA+    ++ N  ++    ++  +  K+ YE+EKE
Sbjct: 66  TLMFGQRAK----TIKNTVSVN--LELTAEEWKKKYEKEKE 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 6e-13
 Identities = 104/636 (16%), Positives = 194/636 (30%), Gaps = 181/636 (28%)

Query: 149 DVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTK-----VLADSLGESSKTLMIVNICP 203
           D+L V          + +    KD+     S+L+K     ++      S    +   +  
Sbjct: 20  DILSVF-----EDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 204 NAAN-----MSETL--------SSLNFSSRARSTVLSLGNRDTIKKWRD-IANDAR---K 246
                    + E L        S +    R  S            + RD + ND +   K
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-----MMTRMYIEQRDRLYNDNQVFAK 128

Query: 247 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE--VQKAWKVSFTLQSDLKSENYML 304
               R +    L+Q +L LR A      + VL+       K W       S         
Sbjct: 129 YNVSRLQPYLKLRQALLELRPA------KNVLIDGVLGSGKTWVALDVCLS--------- 173

Query: 305 ADKHKIEKEQNAQ-----LRNQVAQLLQLEQEQKMQIQ------QRDSTIKTLQAKINSI 353
              +K++ + + +     L+N  +    LE  QK+  Q       R      ++ +I+SI
Sbjct: 174 ---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 354 ESQRNEALHSSEVRSTIRSEPMPA-------VSS------------VLRTTGDGMDSSAV 394
           ++         E+R  ++S+P          V +            +L TT        V
Sbjct: 231 QA---------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF----KQV 277

Query: 395 SKKLEEELKKRDALIERL----HEENEKLFDRLTEKASSVSSPQLS--SPLSKGSVNVQP 448
           +  L        +L         +E + L  +  +        ++   +P     +    
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 449 RDM-ARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNP 507
           RD  A  DN                            + +K+ T      + ++LN   P
Sbjct: 338 RDGLATWDN------------------------WKHVNCDKLTTI-----IESSLNVLEP 368

Query: 508 ----EQYDNLAVISDGAN---KLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPT 560
               + +D L+V    A+    LL L+   VIK   S    ++ ++        +  E T
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKEST 425

Query: 561 -RVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSP 619
             +    L  +V++    +L                  ++  N  ++  S     P    
Sbjct: 426 ISIPSIYLELKVKLENEYALHRS--------------IVDHYNIPKTFDSDDLIPP---- 467

Query: 620 VHYVDEKIQGF-----KINLKPEKKSKLSSVVLRMRGIDQ----DTWRHQVTGGKLREIQ 670
             Y+D+          K    PE+ +    V L  R ++Q    D+     +G  L  +Q
Sbjct: 468 --YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 671 --EEAKSFATGNKA-----LAAL--FVHTPAGELQR 697
             +  K +   N       + A+  F+      L  
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 3e-10
 Identities = 61/405 (15%), Positives = 123/405 (30%), Gaps = 116/405 (28%)

Query: 541 EILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSP------- 593
           +IL+   DA   F+   +   V D            +S+L+   E+  I++S        
Sbjct: 20  DILSVFEDA---FVDNFDCKDVQD----------MPKSILS-KEEIDHIIMSKDAVSGTL 65

Query: 594 --VECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQ---GFKINLKPEKKSKLSSVVLR 648
                 L K      +              +V+E ++    F           L S    
Sbjct: 66  RLFWTLLSKQEEMVQK--------------FVEEVLRINYKF-----------LMS---P 97

Query: 649 MRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAE--N 706
           ++   +            R   E+       N+  A   V     +   ++R  L E   
Sbjct: 98  IKTEQRQP------SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRP 149

Query: 707 FEFLSVTGDDASGGTTGQLELLST----AIMDG---WMAGLGGAVPPSTDALGQLLSEYA 759
            + + + G   SG T   L++  +      MD    W+             L    S   
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------------LKNCNSP-- 195

Query: 760 KRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLE 819
                + L+ L+ +   +       +   S ++  + S+    R++L+    +  LL L 
Sbjct: 196 ----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 820 EGGSPIRNPSTAAEDA-----------RLASLISLDGILNQVKDAVRQSSVN-TLSRSKK 867
                ++N      +A           R   +   D +       +     + TL+  + 
Sbjct: 252 N----VQNAKAW--NAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEV 303

Query: 868 KAMLTS-LDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRS 911
           K++L   LD   + +P  +   +P     IA      E ++   +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA------ESIRDGLA 342

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 70/501 (13%), Positives = 144/501 (28%), Gaps = 110/501 (21%)

Query: 7   DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYN---EQLRELLPQTG---NGLA-- 58
              +  R + E  D   +D    A++N  V+  + Y    + L EL P      +G+   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 59  -KIRLQSLESSIELVQEKVDNPLEFSKV--LKSAFQSRGNDVSKFNVSHLIIMIHIYYNN 115
            K     +   +  +  KV   ++F K+  L     +            ++ M+      
Sbjct: 162 GK---TWVALDV-CLSYKVQCKMDF-KIFWLNLKNCNSPET--------VLEML------ 202

Query: 116 LITGENLYSKLSLVDLAGSEGLIAE----DDSGERITDVLHVM---KSLSALGDVLSS-- 166
               + L  ++     + S+               +  +L        L  L +V ++  
Sbjct: 203 ----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 167 -----------LTSR-KDIVPYENSMLTKVLADSLGESSKTLM---IVNICPNAANMSET 211
                      LT+R K +  + ++  T  +  SL   S TL    + ++     +    
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRP- 315

Query: 212 LSSLNFSSRARST---VLSL------GNRDTIKKWRDIANDARKELYEREKEIQDLKQEI 262
              L       +T    LS+          T   W+ +  D    +   E  +  L+   
Sbjct: 316 -QDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAE 370

Query: 263 LGLRQALKEANDQCVLLYNEV-------QKAW--KVSFTLQSDL-KSENYMLADKHKIEK 312
              R+          +               W   +   +   + K   Y L +K    K
Sbjct: 371 Y--RKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--K 422

Query: 313 EQNAQLRN-QVAQLLQLEQEQKM--QIQQRDSTIKTLQAKINSIESQRN-----EALHSS 364
           E    + +  +   ++LE E  +   I    +  KT  +                  H  
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 365 EVRSTIRSEPMPAV-------SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENE 417
            +    R      V          +R      ++S       ++LK     I     + E
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 418 KLFDRLTEKASSVSSPQLSSP 438
           +L + + +    +    + S 
Sbjct: 543 RLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 5e-08
 Identities = 63/424 (14%), Positives = 122/424 (28%), Gaps = 106/424 (25%)

Query: 504 DF--NPEQYDNLAVISDGANKLLMLVLAAVIKAGASRE-HEILAEI-RDAVFAFIRKMEP 559
           DF     QY            +L +   A +     ++  ++   I        I     
Sbjct: 8   DFETGEHQYQY--------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SK 58

Query: 560 TRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLE---KSNTG--RSRSSSRGSS 614
             V      S    L+    L    E        V+ F+E   + N     S   +    
Sbjct: 59  DAV------SGTLRLFW--TLLSKQE------EMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 615 PARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAK 674
           P+     Y++++ + +  N   +  +K +  V R++              KLR+   E +
Sbjct: 105 PSMMTRMYIEQRDRLYNDN---QVFAKYN--VSRLQPYL-----------KLRQALLELR 148

Query: 675 SFATGNKALAALFVHTPAGELQRQI-RSWLA----------ENFEF----LSVTGDDASG 719
             A        + +    G       ++W+A             +F    L++   ++  
Sbjct: 149 P-AKN------VLIDGVLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 720 GTTGQLELLSTAIMDGWMAGLGGAVPP--STDALGQLLSEY-AKRVYNSQLQHLKDIAG- 775
                L+ L   I   W +    +        ++   L      + Y + L  L ++   
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 776 -----------TLA-TEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGS 823
                       L  T   +    +S   +   S+DH     L       +LL       
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEV-KSLLLKYLDCR 314

Query: 824 PIRNPSTAAEDARLA-SLIS---------LDGILNQVKDA---VRQSSVNTLSRSKKKAM 870
           P   P           S+I+          D   +   D    + +SS+N L  ++ + M
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 871 LTSL 874
              L
Sbjct: 375 FDRL 378

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 32/261 (12%), Positives = 97/261 (37%)

Query: 231  RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVS 290
            ++ ++   ++  +A +       + Q+L++ +  +   ++E  ++   L  E +K  +  
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957

Query: 291  FTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 350
              L+  L+ E          +   + +++     +L +E +     ++R    + +    
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 351  NSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 410
             ++  +  +A + +++++   S        + +      +   + +KLE E       I 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 411  RLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPL 470
             L  +  +L  +L +K   + +            N   + +   +++   L  D+     
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 471  SADKTEGTVALVKSSSEKIKT 491
            + +K E     +    E +KT
Sbjct: 1138 ARNKAEKQKRDLSEELEALKT 1158

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 26/199 (13%), Positives = 70/199 (35%), Gaps = 18/199 (9%)

Query: 235  KKWRDIANDARKELYEREKEIQDLKQEILGL--RQALKEANDQCVLLYNEVQKAWKVSFT 292
            K  R     AR   +   K I  L+     +  ++ LK+   +       V++  K+   
Sbjct: 872  KHVRGWL--ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE----ARSVERYKKLHIG 925

Query: 293  LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINS 352
            L++ +      + +++K  K    ++ N         ++ +  +++   + +  +   N 
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 353  IESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERL 412
            + S + E     +     ++E         +             + E+ + +       L
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLL 1035

Query: 413  HEENEKLFDRLTEKASSVS 431
              E E+L  R+ ++A  ++
Sbjct: 1036 KTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 15/212 (7%)

Query: 230  NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV 289
             R    +   IA  A    Y    + Q + +E    +  + + + +  L      +  K 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLRE---HKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 290  SFTLQSDLKS--------ENYMLADKHKIEKEQNAQLRNQVAQLLQ----LEQEQKMQIQ 337
               LQ   +         +  + A   +  K+ +  L N++ QL +      +E K  ++
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 338  QRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKK 397
            + ++   T   +   + S       S E      +  +     + +   +   +    K 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 398  LEEELKKRDALIERLHEENEKLFDRLTEKASS 429
            +EE   K     E+L  E ++    L  +   
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 24/177 (13%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 245  RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYML 304
            +K     E +I  L+++I    +  K   ++     N ++  +    T    L+S+    
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEK----MNNLEITYS---TETEKLRSD---- 968

Query: 305  ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL-HS 363
             ++ ++ +E+     N+V  L +   + + ++ Q  +  KT++   +  + +  + +   
Sbjct: 969  VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028

Query: 364  SEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKK-RDALIERLHEENEKL 419
             E  + +++E                    +++++ ++ K+  + + ++L EE ++L
Sbjct: 1029 KEQNTLLKTE-----------------KEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 2/172 (1%)

Query: 254 EIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKE 313
           EIQ L       +  L +A+ +   +     +  K+  T   ++   N       +    
Sbjct: 519 EIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEING 578

Query: 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSE 373
           +   +R  V +  Q   E+  + QQ +   K   A+ N I       +      S     
Sbjct: 579 KWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHG 638

Query: 374 PMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425
            +    + LR     +       K+++       + E L  +N+     +  
Sbjct: 639 TLEDQLNHLRQYEKSIV--NYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEH 688

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	956
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.9
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.9
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	97.43
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.91
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.51
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.36
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.01
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.76
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	95.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.66
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.48
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.94
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.7
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.46
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	91.41
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	90.63
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	90.44
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.01
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.21
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.15
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.04
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	80.6

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=2.5e-55  Score=488.92  Aligned_cols=251  Identities=33%  Similarity=0.447  Sum_probs=221.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC--CCceEeeccc--ccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--GLAKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~--~~~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+++++|||||++++||+.+... .....|.|+|||+|||||+|||||.+...  ....++.+..  .+|.|++++.|
T Consensus        97 M~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v  175 (369)
T 3cob_A           97 IYGADSNPGLTPRAMSELFRIMKKD-SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSI  175 (369)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHHT-TTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEE
T ss_pred             ecCCCCCCchhHHHHHHHHHHHHhh-ccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEe
Confidence            7899999999999999999999864 34479999999999999999999988543  3445666554  35679999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      .|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.+++|+.+
T Consensus       176 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~  255 (369)
T 3cob_A          176 STYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQS  255 (369)
T ss_dssp             CSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCcccccCccchhhHHHHH
Confidence            99999999999999999999987    99999999999999988888888999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      ||+||++||+||.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|++.+..+.
T Consensus       256 INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~  335 (369)
T 3cob_A          256 INKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNV  335 (369)
T ss_dssp             HTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887665543


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALK  270 (956)
Q Consensus       233 ~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~  270 (956)
                      ..                  .+|.+|+.++..++++..
T Consensus       336 ~~------------------~ei~~L~~~l~~~~~~~~  355 (369)
T 3cob_A          336 SS------------------KEVARLKKLVSYWKEQAG  355 (369)
T ss_dssp             EC------------------HHHHHHHHHTTCC-----
T ss_pred             CH------------------HHHHHHHHHHHHHHHhcC
Confidence            22                  456667777766665543

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-54  Score=474.85  Aligned_cols=224  Identities=36%  Similarity=0.511  Sum_probs=199.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEee--cc--cccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--QS--LESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~--~~--~~~V~gLtev~V   76 (956)
                      |+|+++++|||||++++||..++. ...+..|.|+|||+|||||+|||||.+.+.....++.  +.  ..+|.|++++.|
T Consensus        98 m~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v  176 (330)
T 2h58_A           98 MEGTAENPGINQRALQLLFSEVQE-KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQV  176 (330)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHT-SCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEE
T ss_pred             EecCCCCCcHHHHHHHHHHHhhhc-ccCCceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEecCCCEEEEe
Confidence            789999999999999999999975 3567899999999999999999999876544444443  32  246779999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      .|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.+++|+.+
T Consensus       177 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~  256 (330)
T 2h58_A          177 QSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQH  256 (330)
T ss_dssp             CSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCC------HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHH
Confidence            99999999999999999999987    99999999999999887777788999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV  225 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~  225 (956)
                      ||+||++||+||.+|.+++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|+
T Consensus       257 IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~  329 (330)
T 2h58_A          257 INKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred             hhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=4.8e-54  Score=478.14  Aligned_cols=230  Identities=30%  Similarity=0.456  Sum_probs=193.1

Q ss_pred             CCCC---CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGS---SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs---~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+   +.++|||||++++||+.+... ..+.+|.|+|||+|||||+|||||++..... .++.+..  .+|.|++++.
T Consensus       102 m~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l-~i~e~~~~~~~v~gl~~~~  179 (365)
T 2y65_A          102 MEGVIGDSVKQGIIPRIVNDIFNHIYAM-EVNLEFHIKVSYYEIYMDKIRDLLDVSKVNL-SVHEDKNRVPYVKGATERF  179 (365)
T ss_dssp             HTBSTTCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEEEETTEEEETTCTTCCSB-CEEECSSSCEEETTCCCEE
T ss_pred             EecCCCCcccCChHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEECCeeeecccCCcCCc-eEEECCCCCEEecCCEEEe
Confidence            5665   456799999999999999753 5678999999999999999999998765443 4555443  3577999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.+++|+.
T Consensus       180 V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~  259 (365)
T 2y65_A          180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAK  259 (365)
T ss_dssp             ECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC---------------
T ss_pred             cCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCcchhcCCcchhHHHHH
Confidence            999999999999999999999998    9999999999999988877778889999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCc
Q 002175          152 HVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN  230 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n  230 (956)
                      +||+||++||+||.+|+++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|++.+..
T Consensus       260 ~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~  339 (365)
T 2y65_A          260 NINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV  339 (365)
T ss_dssp             -CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCccee
Confidence            9999999999999999986 579999999999999999999999999999999999999999999999999999887665


Q ss_pred             cc
Q 002175          231 RD  232 (956)
Q Consensus       231 ~~  232 (956)
                      +.
T Consensus       340 n~  341 (365)
T 2y65_A          340 NE  341 (365)
T ss_dssp             EE
T ss_pred             CC
Confidence            44

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=5.6e-54  Score=475.34  Aligned_cols=228  Identities=33%  Similarity=0.469  Sum_probs=185.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+++++|||||++++||+.+.. ...+..|.|+|||+|||||+|||||.+..  ...++.+..  .+|.|++++.|.|
T Consensus       107 m~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~l~i~e~~~~~~~v~gl~~~~v~s  183 (350)
T 2vvg_A          107 MGGNKEEPGAIPNSFKHLFDAINS-SSSNQNFLVIGSYLELYNEEIRDLIKNNT--KLPLKEDKTRGIYVDGLSMHRVTT  183 (350)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHT-CCTTEEEEEEEEEEEEETTEEEETTTTEE--EECEEEETTTEEEETTCCCEEESS
T ss_pred             eecCCccCchHHHHHHHHHHHHHh-hccCCcEEEEEEEEEEeCCEEEEcccCCc--CceeeEcCCCCEEecCCEEEEcCC
Confidence            789999999999999999999974 35678999999999999999999998532  234454443  4677999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCc--eeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~--~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      ++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+.  ...|+|+|||||||||..++++.|.+++|+.+
T Consensus       184 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~  263 (350)
T 2vvg_A          184 AAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAK  263 (350)
T ss_dssp             HHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC---------------C
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHH
Confidence            999999999999999999987    999999999999987764433  46799999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCcc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNR  231 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~  231 (956)
                      ||+||++||+||.+|.+++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|++.+..+
T Consensus       264 IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n  342 (350)
T 2vvg_A          264 INLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN  342 (350)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCC
T ss_pred             HhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876544

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=1e-53  Score=475.79  Aligned_cols=229  Identities=29%  Similarity=0.457  Sum_probs=193.6

Q ss_pred             CCCCC--CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEe
Q 002175            1 MEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~--~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+.  +++|||||++++||+.+......+..|.|+|||+|||||+|||||.+.......++.+..  .+|.|++++.|
T Consensus       107 m~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V  186 (366)
T 2zfi_A          107 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAV  186 (366)
T ss_dssp             HTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEEC
T ss_pred             eeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEE
Confidence            67874  578999999999999998765667899999999999999999999987665566776654  45779999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC----ceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG----ENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~----~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      .|++|++.+|..|.++|++++|.    |||||+||+|+|.+......    ....|+|+|||||||||..++++.|.+++
T Consensus       187 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  266 (366)
T 2zfi_A          187 TSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK  266 (366)
T ss_dssp             CSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHH
T ss_pred             CCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchh
Confidence            99999999999999999999987    99999999999998754332    24579999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhc------------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHH
Q 002175          149 DVLHVMKSLSALGDVLSSLTS------------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN  216 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~------------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLr  216 (956)
                      |+.+||+||++||+||.+|++            +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+
T Consensus       267 E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLr  346 (366)
T 2zfi_A          267 EGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR  346 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             hhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHH
Confidence            999999999999999999986            34799999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccC
Q 002175          217 FSSRARSTVLSLG  229 (956)
Q Consensus       217 FAsrAK~I~~~~~  229 (956)
                      ||+|||+|++.+.
T Consensus       347 fA~rak~I~~~~~  359 (366)
T 2zfi_A          347 YADRAKQIRNTVS  359 (366)
T ss_dssp             HHHHTC-------
T ss_pred             HHHHHhhccCCCC
Confidence            9999999887554

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=1.4e-53  Score=468.16  Aligned_cols=222  Identities=32%  Similarity=0.464  Sum_probs=203.9

Q ss_pred             CCCCC---CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~---~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+.   +++|||||++++||+.+... .++.+|.|+|||+|||||+|||||++..... .++.+..  .++.|++++.
T Consensus        95 m~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l-~i~e~~~~~~~v~gl~~~~  172 (325)
T 1bg2_A           95 MEGKLHDPEGMGIIPRIVQDIFNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSKTNL-SVHEDKNRVPYVKGCTERF  172 (325)
T ss_dssp             HTBSTTCTTTBCHHHHHHHHHHHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTTCCSB-CEEECTTSCEEETTCCCEE
T ss_pred             ecccCCCcccCccHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecCeeeecccCCCCCc-eEEECCCCCEEecCceEEe
Confidence            67764   45699999999999999753 4678999999999999999999998865443 4555443  3577999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||.+++++.|.+++|+.
T Consensus       173 v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~  252 (325)
T 1bg2_A          173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAK  252 (325)
T ss_dssp             ECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCC
T ss_pred             CCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCCccccchHHH
Confidence            999999999999999999999998    9999999999999988877778889999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +||+||++||+||.+|+++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus       253 ~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I  325 (325)
T 1bg2_A          253 NINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  325 (325)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-53  Score=478.09  Aligned_cols=230  Identities=27%  Similarity=0.398  Sum_probs=183.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccC--CCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~--~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+++++|||||++++||+.+...  ......|.|+|||+|||||+|||||.+....+ .++.+..  .+|.|++++.|
T Consensus       116 M~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l-~ired~~~~v~v~gl~~~~V  194 (388)
T 3bfn_A          116 MLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDL-VIREDCRGNILIPGLSQKPI  194 (388)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBC-CCEECTTSCEECTTCCCEEC
T ss_pred             eecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCc-eEEEcCCCCEEeccceEEEe
Confidence            7899999999999999999999753  24567899999999999999999998865443 4555443  45779999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC-CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~-~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      .|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+... .....|+|+|||||||||..++++.|.+++|+.
T Consensus       195 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~  274 (388)
T 3bfn_A          195 SSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESG  274 (388)
T ss_dssp             CSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCTTC--------------C
T ss_pred             CCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCCcccccccCccchhHHHh
Confidence            99999999999999999999987    9999999999999876543 345789999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCcc
Q 002175          152 HVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNR  231 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~  231 (956)
                      +||+||++||+||.+|.++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|++.+..+
T Consensus       275 ~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n  354 (388)
T 3bfn_A          275 AINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN  354 (388)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC------
T ss_pred             HhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987765443

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=4.4e-53  Score=469.02  Aligned_cols=230  Identities=33%  Similarity=0.456  Sum_probs=208.9

Q ss_pred             CCCC----CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEE
Q 002175            1 MEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQE   74 (956)
Q Consensus         1 M~Gs----~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev   74 (956)
                      |+|+    ++++|||||++++||+.+.. ...+.+|.|+|||+|||||+|||||.+..... .++.+..  .++.|++++
T Consensus        98 m~G~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l-~i~e~~~~g~~v~gl~~~  175 (355)
T 1goj_A           98 MMGTSIDDPDGRGVIPRIVEQIFTSILS-SAANIEYTVRVSYMEIYMERIRDLLAPQNDNL-PVHEEKNRGVYVKGLLEI  175 (355)
T ss_dssp             HTBSCTTSTTTBCHHHHHHHHHHHHHHT-SCTTEEEEEEEEEEEEETTEEEETTSTTCCSC-CEEEETTTEEEETTCCCE
T ss_pred             eecCCCCCcccCCchHHHHHHHHHHHHh-cccCceEEEEEEEEEEECCEEEEcccCccCCc-eeEEcCCCCEeecCCEEE
Confidence            6775    46789999999999999975 35678999999999999999999999866544 3444433  467799999


Q ss_pred             EeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhH
Q 002175           75 KVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV  150 (956)
Q Consensus        75 ~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa  150 (956)
                      .|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.+++|+
T Consensus       176 ~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~  255 (355)
T 1goj_A          176 YVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEA  255 (355)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTT
T ss_pred             eCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCcccccccchhhHHHH
Confidence            9999999999999999999998886    999999999999999888888889999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          151 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       151 ~~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      .+||+||++||+||.+|.++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|++.+.
T Consensus       256 ~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~  335 (355)
T 1goj_A          256 KKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAK  335 (355)
T ss_dssp             GGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCC
T ss_pred             HhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCce
Confidence            99999999999999999985 58999999999999999999999999999999999999999999999999999988766


Q ss_pred             ccc
Q 002175          230 NRD  232 (956)
Q Consensus       230 n~~  232 (956)
                      .+.
T Consensus       336 vn~  338 (355)
T 1goj_A          336 VNA  338 (355)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            543

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=3e-53  Score=469.16  Aligned_cols=226  Identities=33%  Similarity=0.469  Sum_probs=191.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC--------CceEeecc---ccccc
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--------LAKIRLQS---LESSI   69 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~--------~~~v~~~~---~~~V~   69 (956)
                      |+|+  ++|||||++++||+.+......+.+|.|+|||+|||||+|||||.+....        ...++.++   ..++.
T Consensus       102 M~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~  179 (347)
T 1f9v_A          102 MLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT  179 (347)
T ss_dssp             HHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEET
T ss_pred             ccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccccCCceeEEEecCCCceEec
Confidence            4553  57999999999999997655567899999999999999999999875432        22344332   24677


Q ss_pred             ceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcch
Q 002175           70 ELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGE  145 (956)
Q Consensus        70 gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~  145 (956)
                      |++++.|.+++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.
T Consensus       180 ~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  259 (347)
T 1f9v_A          180 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD  259 (347)
T ss_dssp             TCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHH
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeEEEEEECCCCccccccccchh
Confidence            999999999999999999999999999987    9999999999999988777778899999999999999999999999


Q ss_pred             hhHhHHHHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          146 RITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       146 rlkEa~~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      +++|+.+||+||++||+||.+|.+++   .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus       260 rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~  339 (347)
T 1f9v_A          260 RLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN  339 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHh
Confidence            99999999999999999999999865   899999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 002175          223 STVLSL  228 (956)
Q Consensus       223 ~I~~~~  228 (956)
                      +|++.+
T Consensus       340 ~i~~~~  345 (347)
T 1f9v_A          340 STRLVS  345 (347)
T ss_dssp             CTTTC-
T ss_pred             hhccCC
Confidence            987644

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.6e-53  Score=471.82  Aligned_cols=224  Identities=34%  Similarity=0.448  Sum_probs=180.3

Q ss_pred             CCCCC----CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC----CCCceEeec----ccccc
Q 002175            1 MEGSS----HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG----NGLAKIRLQ----SLESS   68 (956)
Q Consensus         1 M~Gs~----~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~----~~~~~v~~~----~~~~V   68 (956)
                      |+|++    +++|||||++++||+.+......+..|.|+|||+|||||+|||||.+..    .....++.+    ...+|
T Consensus       133 M~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v  212 (376)
T 2rep_A          133 MEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTV  212 (376)
T ss_dssp             HTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEE
T ss_pred             eecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEE
Confidence            67764    4789999999999999986556678999999999999999999998752    122344444    23467


Q ss_pred             cceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcc
Q 002175           69 IELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSG  144 (956)
Q Consensus        69 ~gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G  144 (956)
                      .|++++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|
T Consensus       213 ~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g  292 (376)
T 2rep_A          213 TNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALG  292 (376)
T ss_dssp             TTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC---------
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccC
Confidence            7999999999999999999999999999987    999999999999998877777788999999999999999999999


Q ss_pred             ----hhhHhHHHHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175          145 ----ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR  220 (956)
Q Consensus       145 ----~rlkEa~~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr  220 (956)
                          .+++|+.+||+||++||+||.+|++++.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|
T Consensus       293 ~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~R  372 (376)
T 2rep_A          293 PGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK  372 (376)
T ss_dssp             ---------------CHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred             ccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 002175          221 ARST  224 (956)
Q Consensus       221 AK~I  224 (956)
                      ++++
T Consensus       373 v~~~  376 (376)
T 2rep_A          373 VNQC  376 (376)
T ss_dssp             HC--
T ss_pred             HhcC
Confidence            9863

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=7.8e-53  Score=466.09  Aligned_cols=229  Identities=29%  Similarity=0.362  Sum_probs=198.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC-CCceEeeccc--ccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSL--ESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~-~~~~v~~~~~--~~V~gLtev~V~   77 (956)
                      |+|+++++|||||++++||+.+..  .++..|.|+|||+|||||+|||||.+... ....++.+..  .+|.|++++.|.
T Consensus        95 M~G~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~  172 (349)
T 1t5c_A           95 MMGSEDHLGVIPRAIHDIFQKIKK--FPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVY  172 (349)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHGGG--CTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECS
T ss_pred             EecCCCCCchHHHHHHHHHHHHHh--CcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeC
Confidence            789999999999999999999975  46789999999999999999999987543 3446666554  356799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC-----CceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-----GENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~-----~~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      |++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...     +....|+|+|||||||||..++++.|.+++
T Consensus       173 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  252 (349)
T 1t5c_A          173 TSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLK  252 (349)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCC
T ss_pred             CHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccch
Confidence            9999999999999999999997    9999999999999876532     345789999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhcCC--CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          149 DVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~k~--~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      |+.+||+||++||+||.+|++++  .||||||||||+||+|+|||||+|+||+||||.  +++||++||+||+||++|++
T Consensus       253 E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n  330 (349)
T 1t5c_A          253 EGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKN  330 (349)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCC
T ss_pred             hhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999865  699999999999999999999999999999997  69999999999999999988


Q ss_pred             ccCccch
Q 002175          227 SLGNRDT  233 (956)
Q Consensus       227 ~~~n~~~  233 (956)
                      .+..+..
T Consensus       331 ~~~vn~~  337 (349)
T 1t5c_A          331 TPYVNEV  337 (349)
T ss_dssp             CCCCCEE
T ss_pred             CceeccC
Confidence            7655443

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=3.3e-53  Score=472.73  Aligned_cols=224  Identities=29%  Similarity=0.403  Sum_probs=183.0

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc----cccccceeEEEeCCHHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS----LESSIELVQEKVDNPLE   81 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~----~~~V~gLtev~V~S~eE   81 (956)
                      .++|||||++++||+.+..   ...+|.|+|||+|||||+|||||.+.......+..+.    ..+|.|++++.|.|++|
T Consensus       134 ~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e  210 (373)
T 2wbe_C          134 SDIGIIPRALSHLFDELRM---MEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDD  210 (373)
T ss_dssp             TTBCHHHHHHHHHHHHHHH---CCSCEEEEEEEEEEETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHH
T ss_pred             CCCcChHHHHHHHHHHHHh---cCceEEEEEEEEEEeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHH
Confidence            3789999999999999975   3468999999999999999999988655444555442    24677999999999999


Q ss_pred             HHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC-C--CceeeeeeEEeeccCCCccccCCCc-chhhHhHHHH
Q 002175           82 FSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI-T--GENLYSKLSLVDLAGSEGLIAEDDS-GERITDVLHV  153 (956)
Q Consensus        82 ~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~-~--~~~~~SkLsfVDLAGSER~~kt~s~-G~rlkEa~~I  153 (956)
                      ++.+|..|.++|++++|.    |||||+||+|+|.+.... +  .....|+|+|||||||||..++++. |.+++|+.+|
T Consensus       211 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~I  290 (373)
T 2wbe_C          211 VYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNI  290 (373)
T ss_dssp             HHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------
T ss_pred             HHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHH
Confidence            999999999999999998    999999999999986532 2  2246799999999999999999987 9999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      |+||++||+||.+|.++..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|++.+..+.
T Consensus       291 NkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~  369 (373)
T 2wbe_C          291 NQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ  369 (373)
T ss_dssp             CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCE
T ss_pred             HHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988766554

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=1.1e-52  Score=477.51  Aligned_cols=230  Identities=32%  Similarity=0.435  Sum_probs=188.1

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCC--CCCceEEEEEEEEEEEcCcccccCCcCC----CCCceEeeccc--cccccee
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDT--TATARFNFAVTVFELYNEQLRELLPQTG----NGLAKIRLQSL--ESSIELV   72 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~--~~~~~fsVsVSylEIYNE~V~DLL~~~~----~~~~~v~~~~~--~~V~gLt   72 (956)
                      |+|+++++|||||++++||+.|....  .++.+|.|+|||+|||||+|||||.+..    .....++.+..  .+|.|++
T Consensus       154 M~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~  233 (443)
T 2owm_A          154 MMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLT  233 (443)
T ss_dssp             HTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCC
T ss_pred             eecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCE
Confidence            78999999999999999999997642  3578999999999999999999998732    22345666544  4577999


Q ss_pred             EEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----CCceeeeeeEEeeccCCCccccCCCcc
Q 002175           73 QEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSG  144 (956)
Q Consensus        73 ev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----~~~~~~SkLsfVDLAGSER~~kt~s~G  144 (956)
                      ++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+....    ......|+|+|||||||||..++++.|
T Consensus       234 e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g  313 (443)
T 2owm_A          234 EVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATG  313 (443)
T ss_dssp             CEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------
T ss_pred             EEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCcc
Confidence            999999999999999999999999997    999999999999986432    234567999999999999999999999


Q ss_pred             hhhHhHHHHhhhHHHHHHHHHHhhcCC----------------------CCcCCCCCchhhhhccccCCCCeEEEEEeeC
Q 002175          145 ERITDVLHVMKSLSALGDVLSSLTSRK----------------------DIVPYENSMLTKVLADSLGESSKTLMIVNIC  202 (956)
Q Consensus       145 ~rlkEa~~INkSL~aLg~VI~aLs~k~----------------------~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VS  202 (956)
                      .+++|+.+||+||++||+||.+|++++                      .||||||||||+||+|+|||||+|+||+|||
T Consensus       314 ~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iS  393 (443)
T 2owm_A          314 QRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACIS  393 (443)
T ss_dssp             ------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEEC
T ss_pred             ccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEec
Confidence            999999999999999999999998743                      3899999999999999999999999999999


Q ss_pred             CCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          203 PNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       203 Ps~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      |+  +|+||++||+||++|++|++.+..+.
T Consensus       394 P~--~~~ETlsTLrfA~rak~I~n~~~vN~  421 (443)
T 2owm_A          394 PT--DYDETLSTLRYADQAKRIRTRAVVNQ  421 (443)
T ss_dssp             SS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred             cc--cHHHHHHHHHHHHHHhhccccceecc
Confidence            96  69999999999999999987765543

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=5.7e-53  Score=467.21  Aligned_cols=224  Identities=33%  Similarity=0.468  Sum_probs=185.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC----------CCceEeecc---ccc
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN----------GLAKIRLQS---LES   67 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~----------~~~~v~~~~---~~~   67 (956)
                      |+|+  ++|||||++++||+.+......+.+|.|+|||+|||||+|||||.+...          ....++.++   ..+
T Consensus       103 m~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~  180 (349)
T 3t0q_A          103 MLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTY  180 (349)
T ss_dssp             HHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------------CCCEEEETTTTEEE
T ss_pred             eCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEecCCCCEE
Confidence            4554  5699999999999999875566789999999999999999999987431          222344332   246


Q ss_pred             ccceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCc
Q 002175           68 SIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDS  143 (956)
Q Consensus        68 V~gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~  143 (956)
                      |.|++++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.
T Consensus       181 v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~  260 (349)
T 3t0q_A          181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVT  260 (349)
T ss_dssp             ETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC----C
T ss_pred             EeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccccCc
Confidence            77999999999999999999999999999987    99999999999999988888888999999999999999999999


Q ss_pred             chhhHhHHHHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175          144 GERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR  220 (956)
Q Consensus       144 G~rlkEa~~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr  220 (956)
                      |.+++|+.+||+||++||+||.+|.+++   .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|
T Consensus       261 g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~r  340 (349)
T 3t0q_A          261 GERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK  340 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHH
T ss_pred             cccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence            9999999999999999999999998765   4999999999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q 002175          221 ARSTVL  226 (956)
Q Consensus       221 AK~I~~  226 (956)
                      ++.|++
T Consensus       341 v~~ik~  346 (349)
T 3t0q_A          341 VNSTKI  346 (349)
T ss_dssp             HHC---
T ss_pred             hhhccc
Confidence            999875

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=5.7e-53  Score=468.17  Aligned_cols=221  Identities=28%  Similarity=0.429  Sum_probs=177.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN   78 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S   78 (956)
                      |+|+++++|||||++++||+.+... .....|.|+|||+|||||+|||||.+..  ...++.+..  .+|.|++++.|.|
T Consensus       123 m~G~~~~~Giipr~~~~lf~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~l~ire~~~~~~~v~gl~~~~v~s  199 (355)
T 3lre_A          123 MLGSADEPGVMYLTMLHLYKCMDEI-KEEKICSTAVSYLEVYNEQIRDLLVNSG--PLAVREDTQKGVVVHGLTLHQPKS  199 (355)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHHT-TTTEEEEEEEEEEEEETTEEEESSSCCC--CBEEEECTTSCEEEETCCCBCCCS
T ss_pred             eccCCCCCCeeehhhhHHHHhhhhh-ccCceEEEEEEEEEEECCEEEECcCCCC--CceeEEcCCCCEEeeeeeEEecCC
Confidence            7899999999999999999999864 4567899999999999999999998743  346666554  4567999999999


Q ss_pred             HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      ++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...   .....|+|+|||||||||..++++.|.+++|+.
T Consensus       200 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~  279 (355)
T 3lre_A          200 SEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGT  279 (355)
T ss_dssp             HHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC---------------
T ss_pred             HHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHH
Confidence            999999999999999999987    9999999999999976532   335679999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +||+||++||+||.+|++++   .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus       280 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          280 NINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             --CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            99999999999999998743   59999999999999999999999999999999999999999999999999975

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=6e-53  Score=467.83  Aligned_cols=223  Identities=33%  Similarity=0.490  Sum_probs=184.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC-CCceEeeccc--ccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKIRLQSL--ESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~-~~~~v~~~~~--~~V~gLtev~V~   77 (956)
                      |+|+.+++|||||++++||..+......+..|.|+|||+|||||+|||||++... ....++.+..  .+|.|++++.|.
T Consensus       110 m~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~  189 (354)
T 3gbj_A          110 MMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVT  189 (354)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------CBCBC------CCBTTCCCEEEC
T ss_pred             EecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecC
Confidence            7899999999999999999999765567789999999999999999999988542 3344555443  467799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----CCceeeeeeEEeeccCCCccccCCCcchhhHh
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERITD  149 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkE  149 (956)
                      |++|++.+|..|.++|++++|.    |||||+||+|+|.+....    ......|+|+|||||||||..++++.|.+++|
T Consensus       190 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E  269 (354)
T 3gbj_A          190 SYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKE  269 (354)
T ss_dssp             SHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CH
T ss_pred             CHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchh
Confidence            9999999999999999999987    999999999999886322    22346799999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhc------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175          150 VLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS  223 (956)
Q Consensus       150 a~~INkSL~aLg~VI~aLs~------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~  223 (956)
                      +.+||+||++||+||.+|++      +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+.
T Consensus       270 ~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          270 GSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             HHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence            99999999999999999985      457999999999999999999999999999999999999999999999999985

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=9.1e-53  Score=468.71  Aligned_cols=229  Identities=30%  Similarity=0.449  Sum_probs=195.0

Q ss_pred             CCCCC---CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~---~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+.   +++|||||++++||..+..  .++.+|.|+|||+|||||+|||||.+.......++.+..  .+|.|++++.
T Consensus       119 M~G~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~  196 (372)
T 3b6u_A          119 MEGIRGDPEKRGVIPNSFDHIFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFV  196 (372)
T ss_dssp             HTBCTTSGGGBCHHHHHHHHHHHHHHT--CSSCEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEE
T ss_pred             EecCCCCcccCCcHHHHHHHHHHHhhh--ccCCceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEE
Confidence            66754   5679999999999999975  567899999999999999999999987655566666554  4577999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC---CCceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~---~~~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      |.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+..   ......|+|+|||||||||..++++.|.+++
T Consensus       197 v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~  276 (372)
T 3b6u_A          197 TKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLK  276 (372)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EE
T ss_pred             ecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhh
Confidence            999999999999999999999998    999999999999987642   2345679999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccc
Q 002175          149 DVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS  227 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~  227 (956)
                      |+.+||+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|++.
T Consensus       277 E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~  356 (372)
T 3b6u_A          277 EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNK  356 (372)
T ss_dssp             EGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCC
T ss_pred             hHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999865 69999999999999999999999999999999999999999999999999998877


Q ss_pred             cCcc
Q 002175          228 LGNR  231 (956)
Q Consensus       228 ~~n~  231 (956)
                      +..+
T Consensus       357 ~~~n  360 (372)
T 3b6u_A          357 PRVN  360 (372)
T ss_dssp             CCCC
T ss_pred             ceec
Confidence            6544

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=5.1e-53  Score=469.18  Aligned_cols=220  Identities=29%  Similarity=0.409  Sum_probs=183.2

Q ss_pred             CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC--CCceEeecc----cccccceeEEEeCCHH
Q 002175            7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--GLAKIRLQS----LESSIELVQEKVDNPL   80 (956)
Q Consensus         7 d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~--~~~~v~~~~----~~~V~gLtev~V~S~e   80 (956)
                      .+|||||++++||+.+..   .+.+|.|+|||+|||||+|||||.+...  ....+..+.    ..+|.|++++.|.|++
T Consensus       123 ~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~  199 (359)
T 1x88_A          123 LAGIIPRTLHQIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKD  199 (359)
T ss_dssp             TBCHHHHHHHHHHHHTSS---SSEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGG
T ss_pred             cCCchHHHHHHHHHHHhc---cCceEEEEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHH
Confidence            379999999999999863   5689999999999999999999988654  234555543    2457799999999999


Q ss_pred             HHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC-CC--ceeeeeeEEeeccCCCccccCCCcchhhHhHHHH
Q 002175           81 EFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI-TG--ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHV  153 (956)
Q Consensus        81 E~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~-~~--~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~I  153 (956)
                      |++.+|..|.++|++++|.    |||||+||+|+|.+.+.. ++  ....|+|+|||||||||..++++.|.+++|+.+|
T Consensus       200 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~I  279 (359)
T 1x88_A          200 EVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI  279 (359)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CC
T ss_pred             HHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhh
Confidence            9999999999999998886    999999999999876532 22  2457999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      |+||++||+||.+|.++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|++.+.
T Consensus       280 NkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~  355 (359)
T 1x88_A          280 NQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE  355 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999877654

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-52  Score=468.60  Aligned_cols=226  Identities=34%  Similarity=0.463  Sum_probs=194.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC--------CCceEeecc---ccccc
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--------GLAKIRLQS---LESSI   69 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~--------~~~~v~~~~---~~~V~   69 (956)
                      |+|+  ++|||||++++||+.+......+.+|.|+|||+|||||+|||||.+...        ....+..++   ..+|.
T Consensus       158 M~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~  235 (403)
T 4etp_A          158 MLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT  235 (403)
T ss_dssp             HHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEET
T ss_pred             eCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEec
Confidence            4554  5699999999999999875567789999999999999999999987542        122333332   24677


Q ss_pred             ceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcch
Q 002175           70 ELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGE  145 (956)
Q Consensus        70 gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~  145 (956)
                      |++++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.
T Consensus       236 ~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~  315 (403)
T 4etp_A          236 NVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD  315 (403)
T ss_dssp             TCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHH
T ss_pred             CcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhH
Confidence            999999999999999999999999999998    9999999999999998888888899999999999999999999999


Q ss_pred             hhHhHHHHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175          146 RITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR  222 (956)
Q Consensus       146 rlkEa~~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK  222 (956)
                      +++|+.+||+||++||+||.+|+++.   .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus       316 rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~  395 (403)
T 4etp_A          316 RLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN  395 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999998755   499999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 002175          223 STVLSL  228 (956)
Q Consensus       223 ~I~~~~  228 (956)
                      .|++.+
T Consensus       396 ~~~~~~  401 (403)
T 4etp_A          396 STRLVS  401 (403)
T ss_dssp             CC----
T ss_pred             hcccCC
Confidence            987643

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=4.4e-52  Score=459.38  Aligned_cols=220  Identities=29%  Similarity=0.468  Sum_probs=178.1

Q ss_pred             CCCC------CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC-CCCceEeeccc--ccccce
Q 002175            1 MEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKIRLQSL--ESSIEL   71 (956)
Q Consensus         1 M~Gs------~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~-~~~~~v~~~~~--~~V~gL   71 (956)
                      |+|+      .+++|||||++++||+.++.  .+..+|.|+|||+|||||+|||||++.. .....++.+..  .+|.|+
T Consensus       101 m~G~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl  178 (344)
T 4a14_A          101 MGEASVASLLEDEQGIVPRAMAEAFKLIDE--NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGV  178 (344)
T ss_dssp             HCC--------CCCCHHHHHHHHHHHHHHH--CTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEEESC
T ss_pred             ecccchhhhhhcccCCchHHHHHHHHhccc--ccceeeEEEEehhhhhHHHHHHHHHhccccccceeeeccCCCEEEEee
Confidence            5676      47899999999999999986  4668999999999999999999998643 23345666554  356799


Q ss_pred             eEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--------CCceeeeeeEEeeccCCCcccc
Q 002175           72 VQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--------TGENLYSKLSLVDLAGSEGLIA  139 (956)
Q Consensus        72 tev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--------~~~~~~SkLsfVDLAGSER~~k  139 (956)
                      +++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.+..        .+....|+|+|||||||||..+
T Consensus       179 ~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~  258 (344)
T 4a14_A          179 KEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLK  258 (344)
T ss_dssp             CCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--
T ss_pred             eeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcc
Confidence            9999999999999999999999999987    999999999999987532        2345679999999999999999


Q ss_pred             CCCcchhhHhHHHHhhhHHHHHHHHHHhhcC---CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHH
Q 002175          140 EDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN  216 (956)
Q Consensus       140 t~s~G~rlkEa~~INkSL~aLg~VI~aLs~k---~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLr  216 (956)
                      +++.|.+++|+.+||+||++||+||.+|+++   ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+
T Consensus       259 t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~  338 (344)
T 4a14_A          259 TGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN  338 (344)
T ss_dssp             ------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             cCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhh
Confidence            9999999999999999999999999999874   3699999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 002175          217 FSSRAR  222 (956)
Q Consensus       217 FAsrAK  222 (956)
                      ||+|||
T Consensus       339 fA~rAk  344 (344)
T 4a14_A          339 YASRAQ  344 (344)
T ss_dssp             HHHHTC
T ss_pred             hhhhcC
Confidence            999996

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=8.9e-52  Score=459.24  Aligned_cols=219  Identities=26%  Similarity=0.304  Sum_probs=189.0

Q ss_pred             CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc--cccccceeEEEeCCHHHH
Q 002175            5 SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEF   82 (956)
Q Consensus         5 ~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~--~~~V~gLtev~V~S~eE~   82 (956)
                      .+++|||||++++||..++.. ..+..|.|+|||+|||||+|||||.+...  ..+..+.  ..++.|++++.|.|++|+
T Consensus       111 ~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~~--~~~~e~~~~~~~v~gl~~~~V~s~~e~  187 (360)
T 1ry6_A          111 SDTPGIFQYAAGDIFTFLNIY-DKDNTKGIFISFYEIYCGKLYDLLQKRKM--VAALENGKKEVVVKDLKILRVLTKEEL  187 (360)
T ss_dssp             SSCBCHHHHHHHHHHHHHHHH-CSSSCEEEEEEEEEEETTEEEESCCC-------------CCBCGGGSCCEEECSHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHhh-ccCCceEEEEEEEEeeCCeeEEcccCCcc--ceeeEcCCCCEEEcCcEEEEeCCHHHH
Confidence            478999999999999999753 35578999999999999999999987543  2233332  356779999999999999


Q ss_pred             HHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcc-hhhHhHHHHhhhH
Q 002175           83 SKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSG-ERITDVLHVMKSL  157 (956)
Q Consensus        83 l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G-~rlkEa~~INkSL  157 (956)
                      +.+|..|.++|++++|.    |||||+||+|+|.+.+   .....|+|+|||||||||..++++.| .+++|+.+||+||
T Consensus       188 ~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL  264 (360)
T 1ry6_A          188 ILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSL  264 (360)
T ss_dssp             HHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHH
Confidence            99999999999999887    9999999999998754   34568999999999999999998876 5789999999999


Q ss_pred             HHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          158 SALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       158 ~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      ++||+||.+|.+++.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|++.+.
T Consensus       265 ~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~  336 (360)
T 1ry6_A          265 LALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKL  336 (360)
T ss_dssp             HHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887543

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-52  Score=462.42  Aligned_cols=222  Identities=28%  Similarity=0.367  Sum_probs=176.8

Q ss_pred             CCCCC---CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC-----CCceEeeccc-ccccce
Q 002175            1 MEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-----GLAKIRLQSL-ESSIEL   71 (956)
Q Consensus         1 M~Gs~---~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~-----~~~~v~~~~~-~~V~gL   71 (956)
                      |+|+.   +++|||||++++||+.+..  .++..|.|+|||+|||||+|||||++...     ....+..+.. .++.|+
T Consensus       122 M~G~~~~~~~~Giipra~~~lF~~~~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~g~~v~~l  199 (359)
T 3nwn_A          122 MMGATENYKHRGILPRALQQVFRMIEE--RPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGL  199 (359)
T ss_dssp             HTBCSSCGGGBCHHHHHHHHHHHHHHT--CTTSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETC
T ss_pred             eCCccCCccchhhHHHHHHHHHHHhhc--CCCCcEEEEEEEEEEeccccccccccccccccccccceEEecCCceEEecc
Confidence            67865   4589999999999999875  56678999999999999999999986432     2223444443 456799


Q ss_pred             eEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--CCceeeeeeEEeeccCCCccccCCCcch
Q 002175           72 VQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAEDDSGE  145 (956)
Q Consensus        72 tev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~~~~~SkLsfVDLAGSER~~kt~s~G~  145 (956)
                      +++.|.+++|++.++..|.++|.+++|.    |||||+||+|+|.+....  ......|+|+|||||||||+.++++.|.
T Consensus       200 ~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~  279 (359)
T 3nwn_A          200 SVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQ  279 (359)
T ss_dssp             CCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC----------
T ss_pred             EEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeeccccccccccCCchh
Confidence            9999999999999999999999999886    999999999999886543  3345679999999999999999999999


Q ss_pred             hhHhHHHHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          146 RITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       146 rlkEa~~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +++|+.+||+||++||+||.+|+++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus       280 rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          280 VLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             ------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred             HHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999974 579999999999999999999999999999999999999999999999999975

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=1.5e-51  Score=464.31  Aligned_cols=224  Identities=28%  Similarity=0.416  Sum_probs=190.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCc-eEeecc--cccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA-KIRLQS--LESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~-~v~~~~--~~~V~gLtev~V~   77 (956)
                      |+|+++++|||||++++||+.|......+.+|.|+|||+|||||+|||||.+...... .+..++  ..+|.|++++.|.
T Consensus       156 M~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~  235 (412)
T 3u06_A          156 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVL  235 (412)
T ss_dssp             HTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECC
T ss_pred             ecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeC
Confidence            7899999999999999999999865556789999999999999999999987654432 222222  2467799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHH
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHV  153 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~I  153 (956)
                      |++|++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..    .|.+++|+.+|
T Consensus       236 s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~I  311 (412)
T 3u06_A          236 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNI  311 (412)
T ss_dssp             SHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTT
T ss_pred             CHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHH
Confidence            9999999999999999999998    999999999999999888888889999999999999874    46899999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175          154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  228 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~  228 (956)
                      |+||++||+||.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++++.|++.+
T Consensus       312 NkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~  386 (412)
T 3u06_A          312 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK  386 (412)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred             hHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988643

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=4.9e-51  Score=456.49  Aligned_cols=219  Identities=27%  Similarity=0.376  Sum_probs=174.0

Q ss_pred             CCCC------CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--cccccee
Q 002175            1 MEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELV   72 (956)
Q Consensus         1 M~Gs------~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLt   72 (956)
                      |+|+      ..++|||||++++||..+......+..|.|+|||+|||||+|||||.+..  ...+..+..  .+|.|++
T Consensus       152 M~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~~--~l~i~ed~~~~v~v~gl~  229 (387)
T 2heh_A          152 MGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA--KLRVLEDGKQQVQVVGLQ  229 (387)
T ss_dssp             HC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTTE--ECEEEECTTCCEEEETCC
T ss_pred             eccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCCCc--cceEEEcCCCCEEecCCE
Confidence            6675      35799999999999999875333457899999999999999999998743  345555544  4577999


Q ss_pred             EEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCC-Ccchhh
Q 002175           73 QEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERI  147 (956)
Q Consensus        73 ev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~-s~G~rl  147 (956)
                      ++.|.|++|++.+|..|.++|++++|.    |||||+||+|+|.+.     ....|+|+|||||||||..+++ ..+.++
T Consensus       230 ~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~  304 (387)
T 2heh_A          230 EHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-----GRMHGKFSLVDLAGNERGADTSSADRQTR  304 (387)
T ss_dssp             CEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-----SSEEEEEEEEECCCCC-------------
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-----CeeeeEEEEEECCCCccccccccccccch
Confidence            999999999999999999999999987    999999999999875     2467999999999999998886 467888


Q ss_pred             HhHHHHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccc-cCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          148 TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       148 kEa~~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDs-LgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      +|+.+||+||++||+||.+|.+++.||||||||||+||+|+ |||||+|+||+||||+..+++||++||+||+|||+|++
T Consensus       305 ~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~  384 (387)
T 2heh_A          305 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSP  384 (387)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred             hhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence            99999999999999999999999999999999999999999 59999999999999999999999999999999999865

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=8.4e-51  Score=449.04  Aligned_cols=213  Identities=24%  Similarity=0.377  Sum_probs=173.2

Q ss_pred             CCCCChHHHHHHHHHHhhccCCC-CCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecccccccceeEEEeCCHHHHH
Q 002175            5 SHDRGLYARCFEELFDLSNSDTT-ATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFS   83 (956)
Q Consensus         5 ~~d~GIIPRal~dLF~~I~~~~~-~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~~~V~gLtev~V~S~eE~l   83 (956)
                      ++++|||||++++||+.+..... ....|.|+|||+|||||+|||||.+......     ....+.+++++.|.|.+|++
T Consensus       122 ~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-----~~~~~~~~~~~~v~s~~e~~  196 (344)
T 3dc4_A          122 PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPM-----VAARCQRCTCLPLHSQADLH  196 (344)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTSBC-----CSSTTTCSCCEECSSHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCCcc-----ccccccCceecccCCHHHHH
Confidence            36789999999999999976433 2457999999999999999999987553221     11234589999999999999


Q ss_pred             HHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHH
Q 002175           84 KVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSA  159 (956)
Q Consensus        84 ~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~a  159 (956)
                      .+|..|.++|++++|.    |||||+||+|+|.+.      ...|+|+|||||||||..++++.|.+++|+.+||+||++
T Consensus       197 ~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~a  270 (344)
T 3dc4_A          197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS  270 (344)
T ss_dssp             HHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEEEEECCCCCCC-------------CCSCCHHHH
T ss_pred             HHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHH
Confidence            9999999999999987    999999999999753      357999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175          160 LGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  228 (956)
Q Consensus       160 Lg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~  228 (956)
                      ||+||.+|+.++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.....+
T Consensus       271 Lg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~  339 (344)
T 3dc4_A          271 INKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEH  339 (344)
T ss_dssp             HHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999865433

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=2.6e-50  Score=481.20  Aligned_cols=220  Identities=31%  Similarity=0.451  Sum_probs=184.2

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC--CceEeecc---cccccceeEEEeCCHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--LAKIRLQS---LESSIELVQEKVDNPL   80 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~--~~~v~~~~---~~~V~gLtev~V~S~e   80 (956)
                      .++|||||++++||+.|....+.+.+|.|+|||+|||||+|||||.+....  ...++.+.   ..+|.|++++.|.|++
T Consensus       483 ~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~  562 (715)
T 4h1g_A          483 PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPE  562 (715)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHH
T ss_pred             CCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHH
Confidence            468999999999999998766677899999999999999999999875432  22333322   2467799999999999


Q ss_pred             HHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhh
Q 002175           81 EFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKS  156 (956)
Q Consensus        81 E~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkS  156 (956)
                      |++.+|..|.++|++++|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++++.|.|++|+.+||+|
T Consensus       563 ~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~s  642 (715)
T 4h1g_A          563 QAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKS  642 (715)
T ss_dssp             HHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHH
Confidence            9999999999999999987    999999999999999888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccc
Q 002175          157 LSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV  225 (956)
Q Consensus       157 L~aLg~VI~aLs~-k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~  225 (956)
                      |++||+||.+|+. ++.|||||+||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus       643 L~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~  712 (715)
T 4h1g_A          643 LSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR  712 (715)
T ss_dssp             HHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence            9999999999985 45899999999999999999999999999999999999999999999999999986

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=8.4e-51  Score=457.32  Aligned_cols=216  Identities=27%  Similarity=0.352  Sum_probs=173.3

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCCHHHHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDNPLEFS   83 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S~eE~l   83 (956)
                      .++|||||++++||..+......+..|.|+|||+|||||+|||||.+..  ...+..+..  .+|.|++++.|.|++|++
T Consensus       183 ~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~--~l~i~ed~~~~v~V~gl~e~~V~s~~e~~  260 (410)
T 1v8k_A          183 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA--KLRVLEDSRQQVQVVGLQEYLVTCADDVI  260 (410)
T ss_dssp             GGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTTTE--EEEEEECSSCCEEEETCCCEEESSHHHHH
T ss_pred             ccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCCCC--CceEEECCCCCeEecCCEEEEeCCHHHHH
Confidence            4689999999999999875333467899999999999999999998743  345555544  457799999999999999


Q ss_pred             HHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCC-CcchhhHhHHHHhhhHH
Q 002175           84 KVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHVMKSLS  158 (956)
Q Consensus        84 ~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~-s~G~rlkEa~~INkSL~  158 (956)
                      .+|..|.++|++++|.    |||||+||+|+|.+..     ...|+|+|||||||||..+++ ..|.+++|+.+||+||+
T Consensus       261 ~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~  335 (410)
T 1v8k_A          261 KMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLL  335 (410)
T ss_dssp             HHHHHHHHTCC--------CCCSSEEEEEEEEESSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHH
T ss_pred             HHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHH
Confidence            9999999999999987    9999999999998752     467999999999999998886 46788899999999999


Q ss_pred             HHHHHHHHhhcCCCCcCCCCCchhhhhccc-cCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175          159 ALGDVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  228 (956)
Q Consensus       159 aLg~VI~aLs~k~~~VPYRdSKLTrLLqDs-LgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~  228 (956)
                      +||+||.+|..++.||||||||||+||+|+ |||||+|+||+||||+..+++||++||+||++|++|..++
T Consensus       336 aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~  406 (410)
T 1v8k_A          336 ALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH  406 (410)
T ss_dssp             HHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence            999999999999999999999999999999 5999999999999999999999999999999999986543

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.90  E-value=2.7e-25  Score=206.16  Aligned_cols=82  Identities=37%  Similarity=0.526  Sum_probs=76.7

Q ss_pred             HHHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          151 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       151 ~~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      .+||+||++||+||.+|.++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||++|+.|++.+.
T Consensus         2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~   81 (100)
T 2kin_B            2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS   81 (100)
T ss_dssp             CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence            46999999999999999987 58999999999999999999999999999999999999999999999999999987765


Q ss_pred             ccc
Q 002175          230 NRD  232 (956)
Q Consensus       230 n~~  232 (956)
                      .+.
T Consensus        82 ~n~   84 (100)
T 2kin_B           82 VNL   84 (100)
T ss_dssp             CEE
T ss_pred             ecc
Confidence            543

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.90  E-value=3.3e-24  Score=204.12  Aligned_cols=113  Identities=33%  Similarity=0.468  Sum_probs=89.6

Q ss_pred             hhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175          154 MKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD  232 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~  232 (956)
                      |+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||++|+.|++.+..+.
T Consensus         1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~   80 (117)
T 3kin_B            1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL   80 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence            899999999999999874 7999999999999999999999999999999999999999999999999999988765543


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE  271 (956)
Q Consensus       233 ~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~  271 (956)
                      ...     .....+++.....+++.|+.++..|+.++..
T Consensus        81 ~~~-----~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~  114 (117)
T 3kin_B           81 ELT-----AEEWKKKYEKEKEKNKALKSVIQHLEVELNR  114 (117)
T ss_dssp             CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322     1223333344445555555566555555543

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=97.43  E-value=9.8e-05  Score=79.85  Aligned_cols=180  Identities=10%  Similarity=0.172  Sum_probs=107.7

Q ss_pred             CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEE-cCcccccCCcCCCC-C--ceEeecccccccceeEEEeCC-HHH
Q 002175            7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELY-NEQLRELLPQTGNG-L--AKIRLQSLESSIELVQEKVDN-PLE   81 (956)
Q Consensus         7 d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIY-NE~V~DLL~~~~~~-~--~~v~~~~~~~V~gLtev~V~S-~eE   81 (956)
                      ..|=.||++..+|.....-  -..+|.+++||+||| ||.++|||..++.. .  .+...++...+.|++.+.|.+ .+|
T Consensus       103 GsGKT~ral~q~f~~~~~~--~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~ed  180 (298)
T 2o0a_A          103 PHGSLRESLIKFLAEKDTI--YQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLED  180 (298)
T ss_dssp             CCHHHHHHHHHHHHSTTSH--HHHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGG
T ss_pred             CCCccHHHHHHHHHHhhhh--cccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHH
Confidence            4566799999999966320  117999999999999 99999999743332 2  233345555677999999999 899


Q ss_pred             HHHHHHHHHhhccCcCCCCC-cceEEEEEEEEeeccC--CC-ceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhH
Q 002175           82 FSKVLKSAFQSRGNDVSKFN-VSHLIIMIHIYYNNLI--TG-ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL  157 (956)
Q Consensus        82 ~l~lL~~G~~~R~~asT~SS-RSH~IFtI~V~q~~~~--~~-~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL  157 (956)
                      +..++..+...+      .+ +.-.|..+.+...+..  .. ....--+.|+.+.-..                    +.
T Consensus       181 v~~~~~~~~~~~------~~~~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~  234 (298)
T 2o0a_A          181 LPLNFSCDEHPN------LPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SI  234 (298)
T ss_dssp             SCTTTTCC-------------CEEEEEEEEEEESCC-------CCCEEEEEEEECSHH--------------------HH
T ss_pred             HHHHhhcccccc------cCCCCceEEEEEEecCcccccccCCCCceEEEEEEeCCHH--------------------HH
Confidence            888772222111      11 2345666666553321  11 1223457777654321                    11


Q ss_pred             HHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          158 SALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       158 ~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      ..|.+   ++..+    .+-.|+++-+|+..|. ..+.++++++....    +.-..|..+++...+.+
T Consensus       235 ~~l~~---~~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~  291 (298)
T 2o0a_A          235 EQFDK---SIFKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLC  291 (298)
T ss_dssp             HHHHH---HHHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC
T ss_pred             HHHHh---hcccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccC
Confidence            12222   22222    3456788888876665 47889999997543    22337778888777655

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.91  E-value=0.17  Score=53.72  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          252 EKEIQDLKQEILGLRQALKEANDQ  275 (956)
Q Consensus       252 ~~eI~~Lq~EI~~Lk~~L~~~~~q  275 (956)
                      ...+..+..++..+...+......
T Consensus        24 ~~~~~~lp~el~~le~~~~~l~~~   47 (256)
T 3na7_A           24 EPLIREKRKDLDKALNDKEAKNKA   47 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333333344444444444333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.51  E-value=0.22  Score=51.13  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 002175          393 AVSKKLEEELKKRDA---LIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       393 ~l~kkLeEELkkree---~LErL~eE~ekL~qrL~eK  426 (956)
                      ...--|+.++..++.   .+++|..|...|.++|.-+
T Consensus       144 Er~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~  180 (189)
T 2v71_A          144 ERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVR  180 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445666655443   3378888888888888766

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.46  E-value=0.45  Score=47.80  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 002175          402 LKKRDALIERLHEENEKLFDR  422 (956)
Q Consensus       402 Lkkree~LErL~eE~ekL~qr  422 (956)
                      +......+..+..+...+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~  196 (284)
T 1c1g_A          176 LERAEERAELSEGKCAELEEE  196 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.36  E-value=0.057  Score=62.67  Aligned_cols=61  Identities=7%  Similarity=0.079  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175          306 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV  366 (956)
Q Consensus       306 ek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~  366 (956)
                      ...+..+++.++.+++...++++.++++.++++.+++++++++++..++.++++++.....
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333344444455555555556666677777777888888888888888888877776554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.01  E-value=0.37  Score=51.01  Aligned_cols=44  Identities=9%  Similarity=0.115  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +..+...+..+.....++..+++..+..+..++..+..++..+.
T Consensus        99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~  142 (256)
T 3na7_A           99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL  142 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.00  E-value=0.027  Score=71.59  Aligned_cols=40  Identities=13%  Similarity=0.140  Sum_probs=27.7

Q ss_pred             ChHHHHHHHHHHhhccCCCCC-ceEEEEEEEEEEEcCcccc
Q 002175            9 GLYARCFEELFDLSNSDTTAT-ARFNFAVTVFELYNEQLRE   48 (956)
Q Consensus         9 GIIPRal~dLF~~I~~~~~~~-~~fsVsVSylEIYNE~V~D   48 (956)
                      +|+-|.|++|-..|+..-... .....+|..+.||.=.+++
T Consensus       432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~  472 (1184)
T 1i84_S          432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE  472 (1184)
T ss_dssp             HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence            788999999999998643332 3345778889998766655

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.76  E-value=0.033  Score=70.73  Aligned_cols=10  Identities=20%  Similarity=-0.024  Sum_probs=4.9

Q ss_pred             ccCCCCeEEE
Q 002175          188 SLGESSKTLM  197 (956)
Q Consensus       188 sLgGNSkT~m  197 (956)
                      +.-|.+++.|
T Consensus       766 ~~iG~TKVF~  775 (1184)
T 1i84_S          766 YRIGQSKIFF  775 (1184)
T ss_dssp             CCBCSSEEEE
T ss_pred             eeEcCeEEEE
Confidence            3345555554

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=95.66  E-value=0.14  Score=59.16  Aligned_cols=36  Identities=17%  Similarity=0.169  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCc
Q 002175          414 EENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPR  449 (956)
Q Consensus       414 eE~ekL~qrL~eK~Ssgsspq~~Sp~s~~s~~~q~~  449 (956)
                      .|...+.-.|+..-+.+.++..++|-..++..-.||
T Consensus       233 ~ei~Qm~mvLE~~g~~~~~~g~s~~~g~gs~~~s~r  268 (562)
T 3ghg_A          233 TDMPQMRMELERPGGNEITRGGSTSYGTGSETESPR  268 (562)
T ss_dssp             ------------------------------------
T ss_pred             hhhhcEEEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence            455556666666645555555555555555544444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.66  E-value=0.073  Score=61.74  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      ++...+.+....+..+..+++++.+.+.+++++.+++.+++
T Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~  554 (597)
T 3oja_B          514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD  554 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence            33333333333344444444444555555555555555554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.48  E-value=2.3  Score=43.71  Aligned_cols=17  Identities=6%  Similarity=-0.134  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002175          393 AVSKKLEEELKKRDALI  409 (956)
Q Consensus       393 ~l~kkLeEELkkree~L  409 (956)
                      ....+.-+.++-++..+
T Consensus       137 ~kln~aiEr~alLE~El  153 (189)
T 2v71_A          137 QRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.11  E-value=0.39  Score=66.50  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 002175          249 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV  283 (956)
Q Consensus       249 ~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~El  283 (956)
                      .+...++..|+.++..++.+|.+...+...+..++
T Consensus      1930 ~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A         1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34446677777777777777776655554444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.04  E-value=0.5  Score=59.65  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccc
Q 002175            9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE   48 (956)
Q Consensus         9 GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~D   48 (956)
                      +|+-|.|++|-..|+..-........++..+.||.=++++
T Consensus       406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~  445 (1080)
T 2dfs_A          406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE  445 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence            6888899999888876322222235678889998766665

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.94  E-value=0.73  Score=63.88  Aligned_cols=47  Identities=15%  Similarity=0.232  Sum_probs=13.2

Q ss_pred             HHhhHHHHHhhCcccccc--------CchhHHHHHHHHHHHHHHHHhhcccccee
Q 002175          870 MLTSLDELAERMPSLLDI--------DHPCAQRQIADARRMVEVLQQMRSDVALL  916 (956)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  916 (956)
                      +..-++++.+++|..++.        ..|-.-=...+..++-+.|..||++..=|
T Consensus      2981 v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L 3035 (3245)
T 3vkg_A         2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANL 3035 (3245)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            566667777777776542        12222122345556666666666665433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.47  E-value=1.3  Score=44.62  Aligned_cols=53  Identities=11%  Similarity=0.139  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          306 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       306 ek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      .....+..+...|+.++.+...........+.+.+.++..|+.+++.++..+.
T Consensus        62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555555544444444555555566666666666655554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.70  E-value=1.5  Score=55.47  Aligned_cols=23  Identities=9%  Similarity=0.252  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 002175          339 RDSTIKTLQAKINSIESQRNEAL  361 (956)
Q Consensus       339 ~e~eIe~LqeEik~LE~qL~el~  361 (956)
                      .+.++..|++++..|+.++.++.
T Consensus      1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.46  E-value=5.6  Score=38.08  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002175          253 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLAD---KHKIEKEQNAQLRNQVAQLLQLE  329 (956)
Q Consensus       253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Lee---k~k~~kee~~qLq~ql~~l~~~e  329 (956)
                      .++..+..++..|+..+.........+.............|+.++......+.+   ....+......|..++..+....
T Consensus        13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl   92 (129)
T 2fxo_A           13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL   92 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555554443333333333333333334444444444433322   22223334444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el  360 (956)
                      ++...........-..++.++..|+.++..+
T Consensus        93 eeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           93 EDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555666666555543

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=90.44  E-value=13  Score=42.63  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175          311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE  365 (956)
Q Consensus       311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~  365 (956)
                      +.+....|+.++..+.......-..|.-++.-|+.+..+|++||..+........
T Consensus       109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr  163 (491)
T 1m1j_A          109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACK  163 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555555554444456666777778888888888887776666443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.01  E-value=27  Score=33.24  Aligned_cols=30  Identities=37%  Similarity=0.536  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175          397 KLEEELKKRDALIERLHEENEKLFDRLTEK  426 (956)
Q Consensus       397 kLeEELkkree~LErL~eE~ekL~qrL~eK  426 (956)
                      .|.++|.+..+++++|+.+++.+..|+..+
T Consensus        82 ~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~  111 (121)
T 3mq7_A           82 TLNHKLQDASAEVERLRRENQVLSVRIADK  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            345556666777888889999888888877

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.56  E-value=11  Score=43.75  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          247 ELYEREKEIQDLKQEILGLRQALKEA  272 (956)
Q Consensus       247 el~~~~~eI~~Lq~EI~~Lk~~L~~~  272 (956)
                      +...+...|++|+.+++++.+.-...
T Consensus        58 qErDltkrINELKnqLEdlsKnsKds   83 (562)
T 3ghg_A           58 VNQDFTNRINKLKNSLFEYQKNNKDS   83 (562)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhhchhH
Confidence            34455666777777776664444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.21  E-value=47  Score=37.48  Aligned_cols=45  Identities=7%  Similarity=-0.048  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175          317 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL  361 (956)
Q Consensus       317 qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~  361 (956)
                      ++.........+.+.++.+.+..+..+.++...+.+....++.+.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            333333333333334444444444444444444444444444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.31  E-value=39  Score=33.66  Aligned_cols=32  Identities=16%  Similarity=0.365  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ  356 (956)
Q Consensus       325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~q  356 (956)
                      .......++.++.+.+..+..++.++..|+.-
T Consensus       113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v  144 (154)
T 2ocy_A          113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKV  144 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555666666666666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.15  E-value=24  Score=39.83  Aligned_cols=32  Identities=6%  Similarity=-0.161  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          327 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       327 ~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      +..+..+.+++..+++.+.++.++.++..++.
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (487)
T 3oja_A          435 RDWDMYQHKETQLAEENARLKKLNGEADLALA  466 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence            33333333344444444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.04  E-value=25  Score=34.15  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN  358 (956)
Q Consensus       311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~  358 (956)
                      ..+++..|+.++.......++.+.++.+.+.++..|+.++.+|+..+.
T Consensus        87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555666666666666666666665554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=80.60  E-value=32  Score=38.62  Aligned_cols=27  Identities=15%  Similarity=0.315  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175          334 MQIQQRDSTIKTLQAKINSIESQRNEA  360 (956)
Q Consensus       334 ~qlqe~e~eIe~LqeEik~LE~qL~el  360 (956)
                      .++++++.+|..|+.+++.++.+++++
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666666666666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	956
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	2e-35
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-34
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-34
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	2e-33
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-33
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	2e-31
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	3e-31
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	6e-31
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	4e-30

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-35
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 1   MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
           MEG  H     G+  R  +++F+   S       F+  V+ FE+Y +++R+LL  +   L
Sbjct: 93  MEGKLHDPEGMGIIPRIVQDIFNYIYSMDENL-EFHIKVSYFEIYLDKIRDLLDVSKTNL 151

Query: 58  AKIRLQSLESSIELVQE-KVDNPLEFSKVLKSAFQSR----GNDVSKFNVSHLIIMIHIY 112
           +    ++    ++   E  V +P E    +     +R     N     + SH I +I++ 
Sbjct: 152 SVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK 211

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             N  T + L  KL LVDLAGSE +      G  + +  ++ KSLSALG+V+S+L     
Sbjct: 212 QENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST 271

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
            VPY +S +T++L DSLG + +T +++   P++ N SET S+L F  RA++
Sbjct: 272 YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 322

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  133 bits (336), Expect = 2e-34
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           M+G     G+  R  + LFD           +    T  E+YNE L +LL      +   
Sbjct: 142 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 201

Query: 61  RLQSLESSIELV---QEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYY 113
             ++ ++ I +    +E V +P     ++ +A  +R    +  N     SH +  + +  
Sbjct: 202 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIG 261

Query: 114 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI 173
            +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  ++D 
Sbjct: 262 RHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDH 317

Query: 174 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S
Sbjct: 318 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  132 bits (333), Expect = 3e-34
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 16/229 (6%)

Query: 8   RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
            G+  R   ++F+    + T    F+  V++ E+YNE+L +LL  + +   ++++     
Sbjct: 116 AGIIPRTLHQIFEKLTDNGT---EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 172

Query: 68  SIE------LVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNN 115
           +        L +  V N  E  ++L+     R       N  S  + S   + IH+    
Sbjct: 173 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 232

Query: 116 LITGENL-YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIV 174
           +   E +   KL+LVDLAGSE +       +R  +  ++ +SL  LG V+++L  R   V
Sbjct: 233 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 292

Query: 175 PYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           PY  S LT++L DSLG  ++T +I  I P + N+ ETLS+L ++ RA++
Sbjct: 293 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 341

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  130 bits (326), Expect = 2e-33
 Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 24/246 (9%)

Query: 1   MEGS--SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
           M G      +G+  +  E+LF   N  T     ++  V+  E+Y E++R+LL     G  
Sbjct: 104 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNL 163

Query: 59  KIRLQSLESSI--ELVQEKVDNPLEFSKVLKSAFQSR----GNDVSKFNVSHLIIMIHIY 112
           ++R   L      +L +  V +  +   ++ S  + R     N     + SH +  I   
Sbjct: 164 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFT 223

Query: 113 YNNLITGEN----LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSL- 167
                   N      SK+SLVDLAGSE   +    G R+ +  ++ KSL+ LG V+S+L 
Sbjct: 224 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 283

Query: 168 -----------TSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 216
                        + D +PY +S+LT +L ++LG +S+T M+  + P   N  ETLS+L 
Sbjct: 284 EMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR 343

Query: 217 FSSRAR 222
           ++ RA+
Sbjct: 344 YADRAK 349

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  129 bits (325), Expect = 2e-33
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 9   GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESS 68
           G+       +F+  N   T    +       E+YNE + +LL    N      +      
Sbjct: 106 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 165

Query: 69  IE-----------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYY 113
                        +   K+++      +LK A + R    +  N     SH I +IH+  
Sbjct: 166 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSG 225

Query: 114 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT---SR 170
           +N  TG + Y  L+LVDLAGSE +      G+R+ +  ++ KSLS LGDV+ +L    S 
Sbjct: 226 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 285

Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           K  +P+ NS LT +L  SL   SKTLM VNI P++++++ETL+SL F+S+  S
Sbjct: 286 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 338

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  125 bits (313), Expect = 2e-31
 Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 3/224 (1%)

Query: 2   EGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 61
           +  +  +G+YA    ++F L N            VT FE+YN ++ +LL +         
Sbjct: 138 KSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLED 197

Query: 62  LQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGEN 121
            +     + L +  V    +  K++      R +  +  N S+       +   L T   
Sbjct: 198 SRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFAN-SNSSRSHACFQILLRTKGR 256

Query: 122 LYSKLSLVDLAGSEGLIAEDDSG-ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 180
           L+ K SLVDLAG+E       +  +   +   + KSL AL + + +L   K   P+  S 
Sbjct: 257 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 316

Query: 181 LTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           LT+VL DS +GE+S+T MI  I P  ++   TL++L ++ R + 
Sbjct: 317 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKE 360

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  123 bits (310), Expect = 3e-31
 Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 27/283 (9%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
           + G+  + GL  R   ELF +   D+     F+    + ELY + L +LL        K+
Sbjct: 92  IYGADSNPGLTPRAMSELFRIMKKDSN-KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 150

Query: 61  RL----QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIY 112
            +    + + S   +    +    E   +++   + R    +  N     SHLI+ + I 
Sbjct: 151 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE 210

Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
             NL T      KLS VDLAGSE +     +G ++ +   + KSLSALGDV+S+L+S   
Sbjct: 211 STNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 270

Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232
            +PY N  LT +++DSLG ++KTLM VNI P  +N+ ET +SL ++SR RS         
Sbjct: 271 HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRS--------- 321

Query: 233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ 275
                  I ND  K      KE+  LK+ +   ++      D 
Sbjct: 322 -------IVNDPSKN--VSSKEVARLKKLVSYWKEQAGRKGDD 355

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  122 bits (306), Expect = 6e-31
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 3/225 (1%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
             G S   G++     ++F   N            ++ +E+Y  +L +LL +     A  
Sbjct: 107 PYGQSDTPGIFQYAAGDIFTFLNI-YDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE 165

Query: 61  RLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN-VSHLIIMIHIYYNNLITG 119
             +      +L   +V    E    +      R   V+  N  S     I       I  
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK 225

Query: 120 ENLYSKLSLVDLAGSEGLIAEDDSGERI-TDVLHVMKSLSALGDVLSSLTSRKDIVPYEN 178
                K++ +DLAGSE         ++  TD  ++ +SL AL + + ++ S K+ +P+ +
Sbjct: 226 NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRD 285

Query: 179 SMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
           S LTKVL D     SK++MI NI P  +   +TL++L +SSR ++
Sbjct: 286 SELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  120 bits (301), Expect = 4e-30
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 19/267 (7%)

Query: 1   MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
                  RG+  R  E++F  S   + A   +   V+  E+Y E++R+LL    + L   
Sbjct: 101 SIDDPDGRGVIPRIVEQIFT-SILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH 159

Query: 61  RLQSLESSIELVQEKVDNPLEFSKVL-KSAFQSRGNDVSKFNVSH----LIIMIHIYYNN 115
             ++    ++ + E   + ++    + +    +R    +  N        I +I I   N
Sbjct: 160 EEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKN 219

Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IV 174
           + TG     +L LVDLAGSE +     SG+ + +   + KSLSALG V+++LT  K   V
Sbjct: 220 VETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHV 279

Query: 175 PYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTI 234
           PY +S LT++L +SLG +S+T +I+N  P++ N +ETLS+L F  RA+S      N+  +
Sbjct: 280 PYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK----NKAKV 335

Query: 235 KKWRDIANDARKELYEREKEIQDLKQE 261
                 A        E ++ +   K +
Sbjct: 336 NAELSPA--------ELKQMLAKAKTQ 354

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	956
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=2.5e-51  Score=452.83  Aligned_cols=230  Identities=34%  Similarity=0.477  Sum_probs=202.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCC--ceEeeccc--ccccceeEEEe
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL--AKIRLQSL--ESSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~--~~v~~~~~--~~V~gLtev~V   76 (956)
                      |+|+.+++|||||++++||..+... .....|.|++||+|||||+|||||.+.....  ..+..+..  .++.|++++.|
T Consensus        92 m~G~~~~~Giipr~~~~lf~~i~~~-~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v  170 (364)
T d1sdma_          92 IYGADSNPGLTPRAMSELFRIMKKD-SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSI  170 (364)
T ss_dssp             HTBCSSSBCHHHHHHHHHHHHHHHG-GGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEE
T ss_pred             cccCccccchhHHHHHHHHhhhhhc-cccccceEEEEEEEEeccccccccCcccccccccceeecccCccccccceeeee
Confidence            7899999999999999999999764 4568999999999999999999998865443  24444443  45679999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH  152 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~  152 (956)
                      .|++|++.++..|.++|.++.|.    |||||+||+|++.+.+..+.....|+|+|||||||||..++++.|.+++|+.+
T Consensus       171 ~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~  250 (364)
T d1sdma_         171 STYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQS  250 (364)
T ss_dssp             CSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---------CCCT
T ss_pred             CCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhhccccccccccCceeeeccc
Confidence            99999999999999999999887    89999999999999998888889999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCcc
Q 002175          153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNR  231 (956)
Q Consensus       153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~  231 (956)
                      ||+||++|++||.+|+++..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++|++|++.|..+
T Consensus       251 iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n  329 (364)
T d1sdma_         251 INKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN  329 (364)
T ss_dssp             TCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             cccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988766543

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=1.3e-47  Score=420.17  Aligned_cols=222  Identities=30%  Similarity=0.470  Sum_probs=191.9

Q ss_pred             CCCCCC--CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecccc--cccceeEEEe
Q 002175            1 MEGSSH--DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE--SSIELVQEKV   76 (956)
Q Consensus         1 M~Gs~~--d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~~--~V~gLtev~V   76 (956)
                      |+|+++  ++|||||++++||..++.....+..|.|+|||+|||||+|||||.+.......++.+..+  ++.|++++.|
T Consensus       104 m~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~~~~~~~i~~~~~~~~~v~~l~~~~v  183 (349)
T d2zfia1         104 MMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAV  183 (349)
T ss_dssp             HTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEEC
T ss_pred             eccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCEEEecccccccCCceEEecCCCCcEEEEeEEEec
Confidence            678764  899999999999999987667788999999999999999999999876665566655544  5679999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC----ceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175           77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG----ENLYSKLSLVDLAGSEGLIAEDDSGERIT  148 (956)
Q Consensus        77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~----~~~~SkLsfVDLAGSER~~kt~s~G~rlk  148 (956)
                      .+++|++.+|..|..+|.++.|.    |||||+||+|++.+......    ....|+|+|||||||||.++++..|.+++
T Consensus       184 ~s~~e~~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~  263 (349)
T d2zfia1         184 TSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK  263 (349)
T ss_dssp             CSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHH
T ss_pred             cCHHHHHHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCCCcccceeeEEEEeecccchhhhhcCCcccchh
Confidence            99999999999999999999887    89999999999988654322    24569999999999999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHhhc------------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHH
Q 002175          149 DVLHVMKSLSALGDVLSSLTS------------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN  216 (956)
Q Consensus       149 Ea~~INkSL~aLg~VI~aLs~------------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLr  216 (956)
                      |+.+||+||++|++||.+|++            +..|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+
T Consensus       264 e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~  343 (349)
T d2zfia1         264 EGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLR  343 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             hccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCCccEEEEEEeCCChhhHHHHHHHHH
Confidence            999999999999999999974            23689999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 002175          217 FSSRAR  222 (956)
Q Consensus       217 FAsrAK  222 (956)
                      ||+|||
T Consensus       344 fa~rak  349 (349)
T d2zfia1         344 YADRAK  349 (349)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999986

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=2.3e-47  Score=418.95  Aligned_cols=229  Identities=33%  Similarity=0.458  Sum_probs=206.3

Q ss_pred             CCCC----CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc--cccccceeEE
Q 002175            1 MEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQE   74 (956)
Q Consensus         1 M~Gs----~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~--~~~V~gLtev   74 (956)
                      |+|+    ++++|||||++++||..+.. ...+.+|.|+|||+|||||+|||||.+...... +..+.  ..++.|++++
T Consensus        97 m~G~~~~~~~~~Giipr~l~~l~~~~~~-~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~-~~e~~~~~~~v~~l~~~  174 (354)
T d1goja_          97 MMGTSIDDPDGRGVIPRIVEQIFTSILS-SAANIEYTVRVSYMEIYMERIRDLLAPQNDNLP-VHEEKNRGVYVKGLLEI  174 (354)
T ss_dssp             HTBSCTTSTTTBCHHHHHHHHHHHHHHT-SCTTEEEEEEEEEEEEETTEEEETTSTTCCSCC-EEEETTTEEEETTCCCE
T ss_pred             eecccccCcccceecchhHHHHhhhhcc-cccCceEEEEeehhheecceEeeccccccccee-eeeecCCCEeecCceee
Confidence            5664    45689999999999999875 356789999999999999999999998665543 33333  2467799999


Q ss_pred             EeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhH
Q 002175           75 KVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV  150 (956)
Q Consensus        75 ~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa  150 (956)
                      .|.+++++..++..|..+|.++.|.    |||||+||+|+|.+.+...+....++|+|||||||||..++++.|.+++|+
T Consensus       175 ~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~e~  254 (354)
T d1goja_         175 YVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEA  254 (354)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTT
T ss_pred             cchhHHHHHHHHhhcccccccccccccccccccceEEEEEEEEeecCCCCeEEEEEEEeeccCcccccccCCccchhhhh
Confidence            9999999999999999999888765    999999999999999988888899999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175          151 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG  229 (956)
Q Consensus       151 ~~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~  229 (956)
                      ..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||++|++|++.+.
T Consensus       255 ~~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~TL~fa~~~~~i~~~~~  334 (354)
T d1goja_         255 KKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAK  334 (354)
T ss_dssp             GGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCC
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhccCccce
Confidence            99999999999999999986 47999999999999999999999999999999999999999999999999999987665


Q ss_pred             cc
Q 002175          230 NR  231 (956)
Q Consensus       230 n~  231 (956)
                      .+
T Consensus       335 ~n  336 (354)
T d1goja_         335 VN  336 (354)
T ss_dssp             CC
T ss_pred             Ec
Confidence            43

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-47  Score=413.83  Aligned_cols=222  Identities=32%  Similarity=0.479  Sum_probs=204.1

Q ss_pred             CCCCCCC---CChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175            1 MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK   75 (956)
Q Consensus         1 M~Gs~~d---~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~   75 (956)
                      |+|+..+   .||+||++.+||..+... .++.+|.|+|||+|||||+|||||.+...+. .+..+..  .++.|++++.
T Consensus        93 ~~G~~~~~~~~gii~r~l~~l~~~~~~~-~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~-~~~~~~~~~~~v~~l~~~~  170 (323)
T d1bg2a_          93 MEGKLHDPEGMGIIPRIVQDIFNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSKTNL-SVHEDKNRVPYVKGCTERF  170 (323)
T ss_dssp             HTBSTTCTTTBCHHHHHHHHHHHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTTCCSB-CEEECTTSCEEETTCCCEE
T ss_pred             ccCCcccccccchhhhHHHHHHhhhhcc-ccccceEEEEEEEEEEcCcccccccccccce-eEeeccccceeecCCEEEE
Confidence            5676554   599999999999999753 5678999999999999999999998866554 3444333  4577999999


Q ss_pred             eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175           76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL  151 (956)
Q Consensus        76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~  151 (956)
                      |.+.++++.++..|.++|+++.|.    |||||+||+|++.+.+...+....|+|+|||||||||..+++..+.+++|+.
T Consensus       171 v~s~~~~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~~  250 (323)
T d1bg2a_         171 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAK  250 (323)
T ss_dssp             ECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCC
T ss_pred             EeccHhHhHHhhhcccceeecccCCCCCCCccceEEEEEEEEEeCCCCcEEEEEEEEEecccccccccccchhhhhhhhh
Confidence            999999999999999999999987    9999999999999999888888999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          152 HVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       152 ~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      .||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||++||+|
T Consensus       251 ~iN~SL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~I  323 (323)
T d1bg2a_         251 NINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  323 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             cccccHHHHHHHHHHHhcCCCccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=419.72  Aligned_cols=216  Identities=29%  Similarity=0.416  Sum_probs=178.5

Q ss_pred             CChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCc--eEee--cc--cccccceeEEEeCCHHH
Q 002175            8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA--KIRL--QS--LESSIELVQEKVDNPLE   81 (956)
Q Consensus         8 ~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~--~v~~--~~--~~~V~gLtev~V~S~eE   81 (956)
                      +|||||++++||..+.   ..+.+|.|+|||+|||||+|||||++......  .+..  +.  ..++.|++++.|.|++|
T Consensus       116 ~Giipr~~~~lf~~~~---~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e  192 (345)
T d1x88a1         116 AGIIPRTLHQIFEKLT---DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDE  192 (345)
T ss_dssp             BCHHHHHHHHHHHHTS---SSSEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGG
T ss_pred             CCcHHHHHHHHHHhhh---ccCceEEEEEEEEEEECCeeEECCCCCCcccccceeeecccCCCCEEEcCCEEEEeCCHHH
Confidence            6999999999999886   35678999999999999999999987543222  2222  21  24577999999999999


Q ss_pred             HHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC---ceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175           82 FSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG---ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM  154 (956)
Q Consensus        82 ~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~---~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN  154 (956)
                      ++.+|..|.++|.++.|.    |||||+||+|+|.+.....+   ....|+|+|||||||||..+++..|.+++|+.+||
T Consensus       193 ~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~e~~~in  272 (345)
T d1x88a1         193 VYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNIN  272 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCC
T ss_pred             HHHHHHhhhccccccccCccccccccceEEEEEEEEeeccCCCCCceEeeeEEEEecCCccccccccchhhhhccccccc
Confidence            999999999999988776    89999999999988755332   34679999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          155 KSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       155 kSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      +||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||++|++|++
T Consensus       273 ~Sl~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~I~n  344 (345)
T d1x88a1         273 QSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN  344 (345)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCC
T ss_pred             chHHHHHHHHHHHhcCCCcCCCccCHHHHHhHHhcCCCCcEEEEEEeCCchhhHHHHHHHHHHHHHhhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.5e-47  Score=413.03  Aligned_cols=214  Identities=26%  Similarity=0.321  Sum_probs=187.2

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecccccccceeEEEeCCHHHHHHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKV   85 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~~~V~gLtev~V~S~eE~l~l   85 (956)
                      +++||+||++++||..+... .....|.|+|||+|||||+|||||.+.+............++.|++++.|.|.+|++.+
T Consensus       112 ~~~Giipr~~~~lf~~~~~~-~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~  190 (330)
T d1ry6a_         112 DTPGIFQYAAGDIFTFLNIY-DKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILK  190 (330)
T ss_dssp             SCBCHHHHHHHHHHHHHHHH-CSSSCEEEEEEEEEEETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHH
T ss_pred             cCCCchhHHHhhhhhhhhhh-cccceEEEEEEEEeeecccccccccccccceeeecCCCCccccCceEEEEeeccchhhh
Confidence            67899999999999998753 45678999999999999999999987554332222233456779999999999999999


Q ss_pred             HHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhh-HhHHHHhhhHHHH
Q 002175           86 LKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERI-TDVLHVMKSLSAL  160 (956)
Q Consensus        86 L~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rl-kEa~~INkSL~aL  160 (956)
                      +..|..+|.++.|.    |||||+||+|++.+.+   .....|+|+|||||||||..++.+.+... .|+.+||+||++|
T Consensus       191 l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~---~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L  267 (330)
T d1ry6a_         191 MIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLAL  267 (330)
T ss_dssp             HHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccCCcceEEEEEEEecc---cccccceeeeecccccccccccccCCchhhhhhhhhhHHHHHH
Confidence            99999999888876    9999999999998754   34568999999999999999998888764 6999999999999


Q ss_pred             HHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175          161 GDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS  223 (956)
Q Consensus       161 g~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~  223 (956)
                      ++||.+|++++.|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||++||+
T Consensus       268 ~~vi~al~~~~~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         268 KECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999984

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=9.3e-48  Score=424.12  Aligned_cols=212  Identities=28%  Similarity=0.366  Sum_probs=171.4

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc--cccccceeEEEeCCHHHHH
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFS   83 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~--~~~V~gLtev~V~S~eE~l   83 (956)
                      .++||+||++++||..++........|.|+|||+|||||+|||||.+....  .+..+.  ..++.|++++.|.|++|++
T Consensus       142 ~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~--~~~~~~~~~~~v~gl~e~~v~s~~e~~  219 (362)
T d1v8ka_         142 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKL--RVLEDSRQQVQVVGLQEYLVTCADDVI  219 (362)
T ss_dssp             GGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTTTEEE--EEEECSSCCEEEETCCCEEESSHHHHH
T ss_pred             ccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEecccCCccc--cccccccCCcccCCCEEEEecCHHHHH
Confidence            368999999999999987544556789999999999999999999875433  333333  3467799999999999999


Q ss_pred             HHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCC-cchhhHhHHHHhhhHH
Q 002175           84 KVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDD-SGERITDVLHVMKSLS  158 (956)
Q Consensus        84 ~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s-~G~rlkEa~~INkSL~  158 (956)
                      .++..|..+|.++.|.    |||||+||+|+|.+.     ....++|+|||||||||..+++. .+.+++|+.+||+||+
T Consensus       220 ~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~-----~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~  294 (362)
T d1v8ka_         220 KMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLL  294 (362)
T ss_dssp             HHHHHHHHTCC--------CCCSSEEEEEEEEESS-----SSEEEEEEEEECCCCCC------------TTHHHHHHHHH
T ss_pred             HHHhccccccccccccCcccCcceeeEEEEEEEec-----ceeeeeEeeeecccccccccccccchhhhhhhhhhcccHH
Confidence            9999999999999987    999999999999754     34678999999999999988755 4578889999999999


Q ss_pred             HHHHHHHHhhcCCCCcCCCCCchhhhhccc-cCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175          159 ALGDVLSSLTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRARST  224 (956)
Q Consensus       159 aLg~VI~aLs~k~~~VPYRdSKLTrLLqDs-LgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I  224 (956)
                      +|++||.+|++++.|||||+||||+||+|+ +||||+|+||+||||+..+++||++||+||++||+|
T Consensus       295 ~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~I  361 (362)
T d1v8ka_         295 ALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL  361 (362)
T ss_dssp             HHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998 799999999999999999999999999999999987

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=1.8e-47  Score=418.00  Aligned_cols=221  Identities=34%  Similarity=0.483  Sum_probs=186.9

Q ss_pred             CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCC--------ceEeecc---cccccceeEE
Q 002175            6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL--------AKIRLQS---LESSIELVQE   74 (956)
Q Consensus         6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~--------~~v~~~~---~~~V~gLtev   74 (956)
                      .++||+||++++||..+......+.+|.|+|||+|||||+|||||.+.....        ..+..+.   ..++.|++++
T Consensus       103 ~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  182 (342)
T d1f9va_         103 PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSC  182 (342)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCE
T ss_pred             CcCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCCCccccccccceeeeeecCCCCcEEEeeeEEE
Confidence            3689999999999999986556778999999999999999999998754322        1222222   2357799999


Q ss_pred             EeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhH
Q 002175           75 KVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV  150 (956)
Q Consensus        75 ~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa  150 (956)
                      .|.+.+|++.++..|.++|.++.|.    |||||+||+|+|.+.+...+....|+|+|||||||||..++...+.+++|+
T Consensus       183 ~v~s~~~~~~~l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~  262 (342)
T d1f9va_         183 KLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRET  262 (342)
T ss_dssp             ECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHH
T ss_pred             EecchHHHHHHHhhhhhccccccccccccCcccceeEEEEEEEecCCccceeeeeeeeeeccCCcccccccchhhhhhhh
Confidence            9999999999999999999999887    999999999999999888888899999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhcC---CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175          151 LHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL  226 (956)
Q Consensus       151 ~~INkSL~aLg~VI~aLs~k---~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~  226 (956)
                      .+||+||++|++||.+|+++   +.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++|++|++
T Consensus       263 ~~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         263 QNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             hhccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence            99999999999999999974   46999999999999999999999999999999999999999999999999999864

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=9.7e-47  Score=416.61  Aligned_cols=219  Identities=28%  Similarity=0.421  Sum_probs=192.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCce-Eeeccc--ccccceeEEEeC
Q 002175            1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK-IRLQSL--ESSIELVQEKVD   77 (956)
Q Consensus         1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~-v~~~~~--~~V~gLtev~V~   77 (956)
                      |+|+++++|||||++++||..+....+.+..|.|+|||+|||||+|||||.+....... +..+..  .++.|++++.|.
T Consensus       142 m~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~  221 (368)
T d2ncda_         142 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVL  221 (368)
T ss_dssp             HTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEEC
T ss_pred             ecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeecccccccccccceeeccccccccccccceeccC
Confidence            68999999999999999999998766777899999999999999999999886655432 223332  456799999999


Q ss_pred             CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHH
Q 002175           78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHV  153 (956)
Q Consensus        78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~I  153 (956)
                      +++++..++..|.++|..+.|.    |||||+||+|+|.+.+...+....|+|+||||||+|+..    .+.+++|+.+|
T Consensus       222 ~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~I  297 (368)
T d2ncda_         222 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNI  297 (368)
T ss_dssp             SHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC--------------CT
T ss_pred             CHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCCCceEeeeeeeeeeccccccc----hhhhhcccccc
Confidence            9999999999999999998887    999999999999999888888899999999999999864    46789999999


Q ss_pred             hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175          154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS  223 (956)
Q Consensus       154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~  223 (956)
                      |+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++||+
T Consensus       298 N~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~  367 (368)
T d2ncda_         298 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS  367 (368)
T ss_dssp             THHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986