Citrus Sinensis ID: 002200

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950----

MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSSSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

cccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEccccccccccccEEEEccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEEHHHHHHccccccccEEEEEEccccccccccccEEEEccccccccHHHHHccccccccEEEcccHHHHHHHHHccccEEEEEEccccccccccccccHHcccccccccccccccHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccEEEEEEEcccccccEEEEEEcccccccccEEEEEEEccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccEEcEEEccEEEEEcccccc

cccccEEEcccEEcccccccccccccEEEEEEEEEcccccEcEEEEEEcccEEEEcccccEEEEcccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEEHHHHHHccccccccEEEEEEcccccccccccEEEEEccccccHHHHEEEEEccccEEEEEcccHHHHHHHHHHcccEEEEEEccccEEEEEEccccccccccccccccccccccEEEEcccccccEEEcHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEEEEccccHcccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHEEEEEEEEEcccHHHcEEEEEcccccccccEEEEEEEcccHHHHEccccccccEEEEEcccccEEEEEEcccccEEEEEEEEEEEEEcccccccccccccccccccccccEEEccccHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccc

mpagsvslsgavetkfttssladlpyqvQSIEIEieeegyvgmpfvlqsggnwiknkgsdfyvdfsyesKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWnknynvkpreISKAQDRLTDLLQNVYISNPECREIVRMILSTvgrggegdvgqRIRDEILVIQRNnnckggmmeEWHQKlhnntspddVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRaihsepnfrrdqkDGLLRDLGNYMRTLKAVHSGADLESAITNCLgyrsegqgfmvgvqinpipnlpsgfpELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLalslddneDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDpvlrktaslgswqvispVEVFGYVAVVDELLAVqdksydrptILLARRVkgeeeipdgtvAVLTadmpdvlsHVSVRArnckvcfatcfdpniladlqsnegkmlhlkptsaDIAYSVVegselqdsssanlkeedgpsssVALVKKQFagryaitsdeftgelvGAKSRNIaylkgkvpswigiptsvalpfGVFEKVLSDNINQVQELKTEmkssgmpwpgdegeQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIhttnpssgdssEIYAEVVKGLGEtlvgaypgralsfvckkndlkyprvlgypskpiglfirrsiifrsdsngedlegyagaglydsvpmdeAEKVVLDYssdrlitdghFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

mpagsvslsgavetkfttssladlpyQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNvyisnpecREIVRMILStvgrggegdvgqrirDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTlndngitkERLLSYDRAihsepnfrrdqkdgLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTAslgswqvisPVEVFGYVAVVDELLavqdksydrpTILLarrvkgeeeipDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSelqdsssanlkeedgpssSVALVKKQFAGRYAItsdeftgelvgAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKtemkssgmpwpGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKkndlkyprvlgypskpiglFIRRSIifrsdsngeDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFgsaqdiegvvrdGKIYVVQTRPQM

MPAGSVSLSGAVETKFTTSSLADLPYQVQSieieieeeGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRagsaaalslllNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSSSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

****************TTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHS********KDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSN**KMLHL*****DIAY**************************ALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQV*********************RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTN******SEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVV******

****SV*LSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFY********************AKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNC***********************SGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSN*********DNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHL****************************DGPSSSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSD******************W**DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIR***************GYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ*

*********GAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEG********************VALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

***GSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEG******************SSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRP**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		954	2.2.26 [Sep-21-2011]
Q8LPT9		1475	Alpha-glucan water dikina	N/A	no	1.0	0.646	0.949	0.0
Q9AWA5		1464	Alpha-glucan water dikina	N/A	no	0.996	0.649	0.762	0.0
Q9SAC6		1399	Alpha-glucan water dikina	yes	no	0.995	0.679	0.764	0.0
Q9STV0		1278	Alpha-glucan water dikina	no	no	0.983	0.733	0.531	0.0
Q2QTC2		1206	Phosphoglucan, water diki	no	no	0.182	0.144	0.341	5e-21
Q6ZY51		1196	Phosphoglucan, water diki	no	no	0.183	0.146	0.328	2e-19
O57830		821	Probable phosphoenolpyruv	yes	no	0.178	0.207	0.281	4e-11
Q9V2H7		819	Probable phosphoenolpyruv	yes	no	0.178	0.207	0.276	7e-11
O27190		684	Probable phosphoenolpyruv	yes	no	0.170	0.238	0.270	4e-10
O29548		753	Probable phosphoenolpyruv	yes	no	0.169	0.215	0.279	4e-10

>sp\|Q8LPT9\|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1	Back alignment and function desciption

 Score = 1906 bits (4937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 941/991 (94%), Positives = 945/991 (95%), Gaps = 37/991 (3%)

Query: 1    MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSD 60
            +PAGSV LSG+VET FTTSSLADLPYQVQSIEIEIEEEGYVGMP VLQSGGNWIKNKGSD
Sbjct: 485  LPAGSVLLSGSVETTFTTSSLADLPYQVQSIEIEIEEEGYVGMPSVLQSGGNWIKNKGSD 544

Query: 61   FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
            FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE
Sbjct: 545  FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 604

Query: 121  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
            LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPE REIVRMIL
Sbjct: 605  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPEYREIVRMIL 664

Query: 181  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
            STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK
Sbjct: 665  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 724

Query: 241  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
            SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG
Sbjct: 725  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 784

Query: 301  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
            ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL
Sbjct: 785  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 844

Query: 361  EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
            EARQEIRPLL KHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN
Sbjct: 845  EARQEIRPLLCKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 904

Query: 421  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
            LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALA KADWYQKVLQP
Sbjct: 905  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALAGKADWYQKVLQP 964

Query: 481  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 540
            SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV
Sbjct: 965  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 1024

Query: 541  FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
            FGYVAVVDELLAVQDKSYD+PTILLARRVKGEEEIP GTVAVLTADMPDVLSHVSVRARN
Sbjct: 1025 FGYVAVVDELLAVQDKSYDQPTILLARRVKGEEEIPHGTVAVLTADMPDVLSHVSVRARN 1084

Query: 601  CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
            CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS
Sbjct: 1085 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 1144

Query: 661  SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
            SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL
Sbjct: 1145 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 1204

Query: 721  SDNINQ-------------------------------------VQELKTEMKSSGMPWPG 743
            SD+INQ                                     VQELKTEMKSSGMPWPG
Sbjct: 1205 SDDINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 1264

Query: 744  DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 803
            DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT
Sbjct: 1265 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 1324

Query: 804  TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 863
            TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK PRVLGYPSKPIGLFIRR
Sbjct: 1325 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKSPRVLGYPSKPIGLFIRR 1384

Query: 864  SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAG 923
            SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD LITDGHFQQSILSSIARAG
Sbjct: 1385 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQSILSSIARAG 1444

Query: 924  CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 954
            CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM
Sbjct: 1445 CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 1475

Mediates the incorporation of phosphate into starch-like alpha-glucan, mostly at the C-6 position of glucose units. Acts as an overall regulator of starch mobilization. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.
Citrus reticulata (taxid: 85571)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4

>sp\|Q9AWA5\|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2	Back alignment and function description

>sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3	Back alignment and function description

>sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2	Back alignment and function description

>sp\|Q6ZY51\|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1	Back alignment and function description

>sp\|O57830\|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|Q9V2H7\|PPSA_PYRAB Probable phosphoenolpyruvate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O27190\|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O29548\|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		954
57012985		1475	RecName: Full=Alpha-glucan water dikinas	1.0	0.646	0.949	0.0
255573969		1469	alpha-glucan water dikinase, chloroplast	0.997	0.648	0.810	0.0
224110912		1477	predicted protein [Populus trichocarpa]	0.997	0.644	0.793	0.0
356526777		1459	PREDICTED: alpha-glucan water dikinase,	0.997	0.652	0.770	0.0
225425619		1470	PREDICTED: alpha-glucan water dikinase,	0.998	0.648	0.784	0.0
356567660		1459	PREDICTED: alpha-glucan water dikinase,	0.997	0.652	0.766	0.0
449434955		1482	PREDICTED: alpha-glucan water dikinase,	0.996	0.641	0.768	0.0
350534602		1465	glucan water dikinase [Solanum lycopersi	0.996	0.649	0.758	0.0
57012986		1464	RecName: Full=Alpha-glucan water dikinas	0.996	0.649	0.762	0.0
186886420		1463	starch-granule-bound R1 protein [Solanum	0.996	0.650	0.763	0.0

>gi\|57012985\|sp\|Q8LPT9.1\|GWD1_CITRE RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related protein R1; Flags: Precursor gi\|20384925\|gb\|AAM18228.1\| R1 [Citrus reticulata]	Back alignment and taxonomy information

 Score = 1906 bits (4937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 941/991 (94%), Positives = 945/991 (95%), Gaps = 37/991 (3%)

Query: 1    MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSD 60
            +PAGSV LSG+VET FTTSSLADLPYQVQSIEIEIEEEGYVGMP VLQSGGNWIKNKGSD
Sbjct: 485  LPAGSVLLSGSVETTFTTSSLADLPYQVQSIEIEIEEEGYVGMPSVLQSGGNWIKNKGSD 544

Query: 61   FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
            FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE
Sbjct: 545  FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 604

Query: 121  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
            LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPE REIVRMIL
Sbjct: 605  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPEYREIVRMIL 664

Query: 181  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
            STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK
Sbjct: 665  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 724

Query: 241  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
            SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG
Sbjct: 725  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 784

Query: 301  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
            ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL
Sbjct: 785  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 844

Query: 361  EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
            EARQEIRPLL KHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN
Sbjct: 845  EARQEIRPLLCKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 904

Query: 421  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
            LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALA KADWYQKVLQP
Sbjct: 905  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALAGKADWYQKVLQP 964

Query: 481  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 540
            SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV
Sbjct: 965  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 1024

Query: 541  FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
            FGYVAVVDELLAVQDKSYD+PTILLARRVKGEEEIP GTVAVLTADMPDVLSHVSVRARN
Sbjct: 1025 FGYVAVVDELLAVQDKSYDQPTILLARRVKGEEEIPHGTVAVLTADMPDVLSHVSVRARN 1084

Query: 601  CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
            CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS
Sbjct: 1085 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 1144

Query: 661  SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
            SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL
Sbjct: 1145 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 1204

Query: 721  SDNINQ-------------------------------------VQELKTEMKSSGMPWPG 743
            SD+INQ                                     VQELKTEMKSSGMPWPG
Sbjct: 1205 SDDINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 1264

Query: 744  DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 803
            DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT
Sbjct: 1265 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 1324

Query: 804  TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 863
            TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK PRVLGYPSKPIGLFIRR
Sbjct: 1325 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKSPRVLGYPSKPIGLFIRR 1384

Query: 864  SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAG 923
            SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD LITDGHFQQSILSSIARAG
Sbjct: 1385 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQSILSSIARAG 1444

Query: 924  CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 954
            CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM
Sbjct: 1445 CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 1475

Source: Citrus reticulata

Species: Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255573969\|ref\|XP_002527902.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi\|223532677\|gb\|EEF34459.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224110912\|ref\|XP_002315679.1\| predicted protein [Populus trichocarpa] gi\|222864719\|gb\|EEF01850.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356526777\|ref\|XP_003531993.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|225425619\|ref\|XP_002270485.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic [Vitis vinifera] gi\|297739096\|emb\|CBI28585.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356567660\|ref\|XP_003552035.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449434955\|ref\|XP_004135261.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|350534602\|ref\|NP_001234405.1\| glucan water dikinase [Solanum lycopersicum] gi\|196122257\|gb\|ACG69788.1\| glucan water dikinase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|57012986\|sp\|Q9AWA5.2\|GWD1_SOLTU RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related R1 protein; Flags: Precursor gi\|3287270\|emb\|CAA70725.1\| R1 [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|186886420\|gb\|ACC93586.1\| starch-granule-bound R1 protein [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		954
TAIR\|locus:2019953		1399	SEX1 "STARCH EXCESS 1" [Arabid	0.776	0.529	0.745	0.0
TAIR\|locus:2136027		1278	PWD "phosphoglucan, water diki	0.745	0.556	0.515	2.4e-267
TAIR\|locus:2151089		1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.249	0.198	0.291	8e-37
UNIPROTKB\|Q723P7		867	LMOf2365_0430 "Putative phosph	0.091	0.100	0.272	1.1e-05
TIGR_CMR\|DET_0554		758	DET_0554 "phosphoenolpyruvate	0.148	0.187	0.276	0.00072
ASPGD\|ASPL0000006943		911	pdkA [Emericella nidulans (tax	0.196	0.205	0.255	0.00072

TAIR\|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2880 (1018.9 bits), Expect = 0., Sum P(3) = 0.
 Identities = 556/746 (74%), Positives = 633/746 (84%)

Query:     1 MPAGSVSLSGAVETKFTTSSLADLPYQVQSXXXXXXXXGYVGMPFVLQSGGNWIKNKGSD 60
             +P  S+ + GAV+TK T +S  DLP  VQ+         Y GMPFVL +G  WIKN  SD
Sbjct:   413 LPPNSLPVRGAVDTKLTITS-TDLPSPVQTFELEIEGDSYKGMPFVLNAGERWIKNNDSD 471

Query:    61 FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
             FYVDF+ E K VQ+D+GDGKGTAK LL+KIA LE EAQKSFMHRFNIAADL+ EAK AG+
Sbjct:   472 FYVDFAKEEKHVQKDYGDGKGTAKHLLDKIADLESEAQKSFMHRFNIAADLVDEAKSAGQ 531

Query:   121 LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
             LGFAGILVWMRFMATRQL+WNKNYNVKPREISKAQDRLTDLLQ+VY S PE RE++RMI+
Sbjct:   532 LGFAGILVWMRFMATRQLVWNKNYNVKPREISKAQDRLTDLLQDVYASYPEYRELLRMIM 591

Query:   181 STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
             STVGRGGEGDVGQRIRDEILVIQR N+CKGG+MEEWHQKLHNNTSPDDV+ICQAL+DYIK
Sbjct:   592 STVGRGGEGDVGQRIRDEILVIQRKNDCKGGIMEEWHQKLHNNTSPDDVVICQALMDYIK 651

Query:   241 SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
             SDFD+S YWKTLNDNGITKERLLSYDRAIHSEPNFR +QKDGLLRDLG+YMRTLKAVHSG
Sbjct:   652 SDFDLSVYWKTLNDNGITKERLLSYDRAIHSEPNFRGEQKDGLLRDLGHYMRTLKAVHSG 711

Query:   301 ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
             ADLESAI NC+GY+ +G+GFMVGVQINP+  LPSG+P+LL+FV EHVE++NVE LLEGLL
Sbjct:   712 ADLESAIQNCMGYQDDGEGFMVGVQINPVSGLPSGYPDLLRFVLEHVEEKNVEPLLEGLL 771

Query:   361 EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
             EARQE+RPLL K +DRLKDLLFLD+AL+S+VRTAIE+GYE+LN+AGPEKIMYF+SL+LEN
Sbjct:   772 EARQELRPLLLKSHDRLKDLLFLDLALDSTVRTAIERGYEQLNDAGPEKIMYFISLVLEN 831

Query:   421 LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
             LALS DDNEDLIYCLKGW  AL M KSK D+WAL+AKSVLDR+RLALASKA+ Y ++LQP
Sbjct:   832 LALSSDDNEDLIYCLKGWQFALDMCKSKKDHWALYAKSVLDRSRLALASKAERYLEILQP 891

Query:   481 SAEYLGTLLSVDKWAVDIFTEEMIRXXXXXXXXXXXNRLDPVLRKTASLGSWQVISPVEV 540
             SAEYLG+ L VD+ AV IFTEE+IR           NRLDPVLRKTA+LGSWQVISPVEV
Sbjct:   892 SAEYLGSCLGVDQSAVSIFTEEIIRAGSAAALSSLVNRLDPVLRKTANLGSWQVISPVEV 951

Query:   541 FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
              GYV VVDELL VQ+K+YDRPTI++A RV+GEEEIPDG VAVLT DMPDVLSHVSVRARN
Sbjct:   952 VGYVIVVDELLTVQNKTYDRPTIIVANRVRGEEEIPDGAVAVLTPDMPDVLSHVSVRARN 1011

Query:   601 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
              K+CFATCFD  IL+DLQ  +GK+L L+PTSAD+ Y  V  SEL   SS NL  ED P S
Sbjct:  1012 GKICFATCFDSGILSDLQGKDGKLLSLQPTSADVVYKEVNDSELSSPSSDNL--EDAPPS 1069

Query:   661 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
              ++LVKKQFAGRYAI+S+EFT +LVGAKSRNI YLKGKVPSW+GIPTSVALPFGVFEKV+
Sbjct:  1070 -ISLVKKQFAGRYAISSEEFTSDLVGAKSRNIGYLKGKVPSWVGIPTSVALPFGVFEKVI 1128

Query:   721 SDNINQVQELKTEMKSSGMPWPGDEG 746
             S+  NQ    K  +    +   GD+G
Sbjct:  1129 SEKANQAVNDKLLVLKKTLD-EGDQG 1153

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005983 "starch catabolic process" evidence=IMP

GO:0050521 "alpha-glucan, water dikinase activity" evidence=IMP;TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR\|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q723P7 LMOf2365_0430 "Putative phosphoenolpyruvate synthase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000006943 pdkA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAC6	GWD1_ARATH	2, ., 7, ., 9, ., 4	0.7648	0.9958	0.6790	yes	no
Q8LPT9	GWD1_CITRE	2, ., 7, ., 9, ., 4	0.9495	1.0	0.6467	N/A	no
Q9AWA5	GWD1_SOLTU	2, ., 7, ., 9, ., 4	0.7628	0.9968	0.6495	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.9.4	0.991
3rd Layer	2.7.9	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		954
pfam01326		324	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE	3e-29
TIGR01418		782	TIGR01418, PEP_synth, phosphoenolpyruvate synthase	7e-15
PRK06464		795	PRK06464, PRK06464, phosphoenolpyruvate synthase;	1e-14
COG0574		740	COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva	3e-10
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	4e-07
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	1e-05

>gnl\|CDD\|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Back alignment and domain information

 Score =  119 bits (299), Expect = 3e-29
 Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 34/206 (16%)

Query: 749 RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSS 808
             EQ   AIK VWAS ++ RA    +   +D E + MAV+VQ +++AD + V  T +PS+
Sbjct: 128 GLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASGVAFTRDPST 187

Query: 809 GDSSEIYAEVVKGLGETLV-GAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIF 867
           GD   +  E V GLGE +V G         V + +     R LG   K + L +      
Sbjct: 188 GDRDLVVIEAVWGLGEAVVSGEVTPDTFV-VSRDDGTVRERELG--QKEVALVLEGGGTV 244

Query: 868 RSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIE 927
                               VP +     VL        TD   Q+     +A     +E
Sbjct: 245 EVP-----------------VPEERRSAPVL--------TDAQLQE-----LADLAKRLE 274

Query: 928 ELFGSAQDIEGVVRDGKIYVVQTRPQ 953
             FGS QDIE  +  G++Y++Q RP 
Sbjct: 275 AHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324

>gnl\|CDD\|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase	Back alignment and domain information

>gnl\|CDD\|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		954
PRK06464		795	phosphoenolpyruvate synthase; Validated	100.0
PRK06241		871	phosphoenolpyruvate synthase; Validated	100.0
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	100.0
PF01326		327	PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate	100.0
PRK05878		530	pyruvate phosphate dikinase; Provisional	100.0
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	99.97
COG0574		740	PpsA Phosphoenolpyruvate synthase/pyruvate phospha	99.97
PRK09279		879	pyruvate phosphate dikinase; Provisional	99.97
PRK05849		783	hypothetical protein; Provisional	99.94
PLN02784		894	alpha-amylase	98.85
PLN02784		894	alpha-amylase	98.78
PRK05849		783	hypothetical protein; Provisional	96.6
PRK08296		603	hypothetical protein; Provisional	96.36
PF00391		80	PEP-utilizers: PEP-utilising enzyme, mobile domain	96.07
PRK06241		871	phosphoenolpyruvate synthase; Validated	95.83
PRK05878		530	pyruvate phosphate dikinase; Provisional	94.45
PRK05865		854	hypothetical protein; Provisional	94.35
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	94.34
PRK06354		590	pyruvate kinase; Provisional	94.24
PRK09279		879	pyruvate phosphate dikinase; Provisional	94.16
PRK06464		795	phosphoenolpyruvate synthase; Validated	93.86
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	93.45
PRK11377		473	dihydroxyacetone kinase subunit M; Provisional	92.93
COG3848		111	Phosphohistidine swiveling domain [Signal transduc	90.45
PRK11177		575	phosphoenolpyruvate-protein phosphotransferase; Pr	89.23
TIGR01417		565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	87.67
PRK03955		131	hypothetical protein; Reviewed	86.84
COG1080		574	PtsA Phosphoenolpyruvate-protein kinase (PTS syste	85.94
PRK11061		748	fused phosphoenolpyruvate-protein phosphotransfera	85.42
COG3605		756	PtsP Signal transduction protein containing GAF an	83.6
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	82.74

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Probab=100.00  E-value=4.6e-43  Score=425.12  Aligned_cols=256  Identities=24%  Similarity=0.380  Sum_probs=202.3

Q ss_pred             CceeeeCCCCC---CCccCHHHHHHHHHHccCC-CcccCCCceecChhhhHHHHhhhh-----H------------H---
Q 002200          671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNI-----N------------Q---  726 (954)
Q Consensus       671 ~~~vl~l~e~~---~~~VG~KAanLg~L~~~~p-~g~~VP~GfvIPfg~fe~~L~~~~-----~------------~---  726 (954)
                      .+++++|.++.   ...|||||+||++|++.++ .||+||+|||||+++|++||+.+.     .            .   
T Consensus         4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~~l~~~i~~~l~~~~~~d~~~l~~   83 (795)
T PRK06464          4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQTGLNEKIYELLDGLDVDDVDALAK   83 (795)
T ss_pred             CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhCChHHHHHHHHhhcCcCCHHHHHH
Confidence            45778888764   5789999999999998666 589999999999999999987531     0            0   


Q ss_pred             ------------------HHHHHH--------------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHH
Q 002200          727 ------------------VQELKT--------------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVW  761 (954)
Q Consensus       727 ------------------lqeL~~--------------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VW  761 (954)
                                        .++|.+              +||||+  ..||.      |+       .+.+++++|||+||
T Consensus        84 ~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa--~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v~  161 (795)
T PRK06464         84 AGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSA--TAEDLPDASFAGQQETFLNVRGIDDVLEAVKECF  161 (795)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCC--cccCCCCCCCCCccceecCCCCHHHHHHHHHHHH
Confidence                              111111              245666  45663      32       24799999999999


Q ss_pred             HhcCChhhHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeEEE
Q 002200          762 ASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVC  839 (954)
Q Consensus       762 ASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f~v  839 (954)
                      ||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.+++.++++||+++||||+||+|.. +||+|.+
T Consensus       162 aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~~v  240 (795)
T PRK06464        162 ASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEFYV  240 (795)
T ss_pred             HccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEEEE
Confidence            99999999999999999999999999999999999  99999999999999999999999999999999986 8999999


Q ss_pred             eccCCC--CccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHHHH
Q 002200          840 KKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILS  917 (954)
Q Consensus       840 ~k~~~~--~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~  917 (954)
                      +|.+..  ...++   ++.++.| ...+++...  |       +.| ...+++++..+      ..|+|+|++     ++
T Consensus       241 ~~~~~~~~~~~i~---~~~i~~K-~~~~~~~~~--~-------~~~-~~~~~~~~~~~------~~~~L~~~~-----l~  295 (795)
T PRK06464        241 HKPTLKAGKPAIV---RRTLGSK-KIKMVYDDG--G-------EHG-VKTVDVPEEER------NRFSLTDEE-----VL  295 (795)
T ss_pred             eccccccccccee---eeecccc-ceeeeeccC--C-------CCc-eeEEeCCHHHh------hccCCCHHH-----HH
Confidence            997642  01122   4555555 222333211  1       112 23456665433      689999997     79


Q ss_pred             HHHHHHHHHHHHhCCceeEEEEEEC--CEEEEEeeccCC
Q 002200          918 SIARAGCEIEELFGSAQDIEGVVRD--GKIYVVQTRPQM  954 (954)
Q Consensus       918 ~La~la~~IE~~fG~PQDIEwai~~--g~LyILQaRP~v  954 (954)
                      +|++++.+||++||.|||||||+++  |+|||||+||+.
T Consensus       296 ~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit  334 (795)
T PRK06464        296 ELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET  334 (795)
T ss_pred             HHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence            9999999999999999999999987  999999999973

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05865 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK11377 dihydroxyacetone kinase subunit M; Provisional	Back alignment and domain information

>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional	Back alignment and domain information

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase	Back alignment and domain information

>PRK03955 hypothetical protein; Reviewed	Back alignment and domain information

>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional	Back alignment and domain information

>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		954
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	1e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794	Back alignment and structure

 Score = 87.3 bits (216), Expect = 1e-17
 Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 34/207 (16%)

Query: 756 AIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAF--VIHTTNPSSGDSSE 813
           A+  V+AS +N+RA         +H+ + ++  VQ ++ +D     V+ T +  SG    
Sbjct: 157 AMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQV 216

Query: 814 IYAEVVKGLGETLVGAYPGRAL--SFVCKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRS 869
           ++     GLGE +V    G      F   K  LK   P +L    K +G    + I    
Sbjct: 217 VFVTSSYGLGENVVQ---GAVNPDEFYVFKPTLKAGKPAIL---RKTMGSKHIKMIFTDK 270

Query: 870 DSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEEL 929
              G+ +           VP ++  +          ITD    +     +A     IE+ 
Sbjct: 271 AEAGKSVT-------NVDVPEEDRNR--------FSITDEEITE-----LAHYALTIEKH 310

Query: 930 FGSAQDIEGVV--RDGKIYVVQTRPQM 954
           +G   DIE      DGK+Y++Q RP+ 
Sbjct: 311 YGRPMDIEWGRDGLDGKLYILQARPET 337

PyMOL of 2ols

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		954
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	100.0
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	100.0
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	100.0
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	100.0
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	99.97
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	95.98
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	95.43
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	95.16
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	94.56
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	94.36
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	93.85
1zym_A		258	Enzyme I; phosphotransferase; 2.50A {Escherichia c	92.99
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	92.06
2wqd_A		572	Phosphoenolpyruvate-protein phosphotransferase; ki	89.52
2hwg_A		575	Phosphoenolpyruvate-protein phosphotransferase; en	88.82

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

Probab=100.00  E-value=1.1e-41  Score=413.18  Aligned_cols=257  Identities=25%  Similarity=0.355  Sum_probs=197.8

Q ss_pred             CceeeeCCCCC---CCccCHHHHHHHHHHccCC-CcccCCCceecChhhhHHHHhhhhH-----H---------------
Q 002200          671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNIN-----Q---------------  726 (954)
Q Consensus       671 ~~~vl~l~e~~---~~~VG~KAanLg~L~~~~p-~g~~VP~GfvIPfg~fe~~L~~~~~-----~---------------  726 (954)
                      +++++++++.+   ..+||||++||++|.++++ .|++||+||+||+++|++|++.+.-     .               
T Consensus         3 ~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~~l~~~i~~~l~~l~~~~~~~l~~   82 (794)
T 2ols_A            3 DNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHNGLSERISAALAKLDVEDVAELAR   82 (794)
T ss_dssp             -CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGGGHHHHHHHHHHSCCTTSHHHHHH
T ss_pred             CCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhCChHHHHHHHHHhhcccCHHHHHH
Confidence            46889998874   5889999999999986433 5799999999999999999875310     0               


Q ss_pred             ------------------HHHHHHH----------------HHhcCCCCCCCC------Cc-------ccHHHHHHHHHH
Q 002200          727 ------------------VQELKTE----------------MKSSGMPWPGDE------GE-------QRWEQAWMAIKK  759 (954)
Q Consensus       727 ------------------lqeL~~A----------------vRSS~~~~aeD~------g~-------~~~e~l~~AIk~  759 (954)
                                        .++|.++                ||||+  .+||.      |+       .++++++.|||+
T Consensus        83 ~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa--~~EDl~~~sfAG~~~t~l~v~g~~~l~~Aik~  160 (794)
T 2ols_A           83 VGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSA--TAEDLPDASFAGQQETFLNINGLDNVKEAMHH  160 (794)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEE--CC-------CCSCSCEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCC--ChhhhhhhhhhhhhhhhhcCCCHHHHHHHHHH
Confidence                              1122111                23444  34552      22       258999999999


Q ss_pred             HHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeE
Q 002200          760 VWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSF  837 (954)
Q Consensus       760 VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f  837 (954)
                      ||||+||+||+.||+.+|++++++.|||+||+||.++  +|||+||+||.+|+++.++|+++|||||.||+|.+ +|+.|
T Consensus       161 v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd~~  239 (794)
T 2ols_A          161 VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPDEF  239 (794)
T ss_dssp             HHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCEEE
T ss_pred             HHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCcEE
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999997 89999


Q ss_pred             EEeccCCC--CccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHH
Q 002200          838 VCKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSI  915 (954)
Q Consensus       838 ~v~k~~~~--~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~l  915 (954)
                      .++|++..  ...+.   ++.++.| ...+++..  +++      .+|.+..+++++..+      ..++|+|++     
T Consensus       240 ~v~kp~l~~~~~~i~---~~~~~~k-~~~~~~~~--~~~------~g~~~~~~~~p~~~~------~~~~L~d~~-----  296 (794)
T 2ols_A          240 YVFKPTLKAGKPAIL---RKTMGSK-HIKMIFTD--KAE------AGKSVTNVDVPEEDR------NRFSITDEE-----  296 (794)
T ss_dssp             EEEHHHHHTTSCCEE---EEECCCC-CEEEEECS--CCS------SSTTEEEEECCHHHH------TSCSSCHHH-----
T ss_pred             EEeccccccCCccee---eeecccc-ceeEEecc--ccc------CCCeeEEEeCCHHHh------cCCCCCHHH-----
Confidence            99983210  01232   3344444 23444432  111      223345677776543      689999997     


Q ss_pred             HHHHHHHHHHHHHHhCCceeEEEEEECC--EEEEEeeccC
Q 002200          916 LSSIARAGCEIEELFGSAQDIEGVVRDG--KIYVVQTRPQ  953 (954)
Q Consensus       916 l~~La~la~~IE~~fG~PQDIEwai~~g--~LyILQaRP~  953 (954)
                      +.+|++++..||++||.||||||+++++  +|||||+||+
T Consensus       297 ~~~L~~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~  336 (794)
T 2ols_A          297 ITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE  336 (794)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCc
Confidence            6999999999999999999999999976  9999999996

PyMOL of 2ols

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A	Back alignment and structure

>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		954
d1h6za3		405	d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N	2e-11
d1kbla3		375	d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N	2e-09
d1vbga3		380	d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N	2e-07

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

 Score = 65.0 bits (157), Expect = 2e-11
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 50/213 (23%)

Query: 744 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEY----LCMAVLVQEIINADYAF 799
              +    Q + AIK V+ S  N RA    R   +           A++   I +     
Sbjct: 199 SFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTAVNVQAMVFGNINDRSATG 258

Query: 800 VIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGL 859
           V  + +PS+G++      +V   GE +V                           + I  
Sbjct: 259 VAFSRSPSTGENFFFGEYLVNAQGEDVVAG---------------------IRTPQQINH 297

Query: 860 FIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSI 919
            +      ++   GE+        + +++P +                           +
Sbjct: 298 SLSLRWA-KAHGVGEEERRKRYPSMEEAMPENYRL------------------------L 332

Query: 920 ARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRP 952
                 +E  +   QD+E  V+DG+++++Q R 
Sbjct: 333 CDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRN 365

PyMOL of d1h6za3

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375	Back information, alignment and structure

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		954
d1h6za3		405	Pyruvate phosphate dikinase, N-terminal domain {Tr	99.97
d1vbga3		380	Pyruvate phosphate dikinase, N-terminal domain {Ma	99.95
d1kbla3		375	Pyruvate phosphate dikinase, N-terminal domain {Cl	99.95
d1zyma2		124	N-terminal domain of enzyme I of the PEP:sugar pho	97.53
d1h6za2		132	Pyruvate phosphate dikinase, central domain {Trypa	96.53
d1vbga2		135	Pyruvate phosphate dikinase, central domain {Maize	96.3
d1kbla2		133	Pyruvate phosphate dikinase, central domain {Clost	94.94
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	93.28

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.97  E-value=6.9e-33  Score=308.39  Aligned_cols=158  Identities=24%  Similarity=0.224  Sum_probs=120.5

Q ss_pred             cHHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEE-----eeccCeeEEEEecCCCCCCCCceeeeeccccc
Q 002200          749 RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQE-----IINADYAFVIHTTNPSSGDSSEIYAEVVKGLG  823 (954)
Q Consensus       749 ~~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQe-----mV~ad~SGVl~T~nP~tgd~~~i~IEa~~GLG  823 (954)
                      .++++..+|+.||+|+|++||..||...+++++ ..+++++|.     |+.+..+||+||.||.+|+...+.+++++|+|
T Consensus       204 ~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~-~~~~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~  282 (405)
T d1h6za3         204 PVMQLFAAIKAVFRSWGNPRATIYRRMNNITGL-LGTAVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQG  282 (405)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSC-CCCCEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCT
T ss_pred             chHHhHHHHHHHHhhhcCchHHHHHHhcCccch-hhhhheeeeeeecccccccccccccccCCCCCCCceeeEecccCcc
Confidence            467899999999999999999999999999874 345555554     55567899999999999999999999999999


Q ss_pred             ccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCC
Q 002200          824 ETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD  903 (954)
Q Consensus       824 EtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~  903 (954)
                      +.+|+|.. +|+.|..++....   .     +                         ..+.      ... ....++...
T Consensus       283 ~~vv~G~~-~~~~~~~~~~~~~---~-----~-------------------------~~~~------~~~-~~~~~~~~~  321 (405)
T d1h6za3         283 EDVVAGIR-TPQQINHSLSLRW---A-----K-------------------------AHGV------GEE-ERRKRYPSM  321 (405)
T ss_dssp             THHHHCCS-CCEESSHHHHHHH---H-----T-------------------------TSSC------CHH-HHHHHSCCH
T ss_pred             eeeccCcc-CCceeeeecccch---h-----h-------------------------cccc------cee-cccccccch
Confidence            99999987 6776554443210   0     0                         0000      000 001112233


Q ss_pred             cccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200          904 RLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ  953 (954)
Q Consensus       904 plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~  953 (954)
                      +.+++++     +++|+++|.+||++||+|||||||+++|+|||||+||.
T Consensus       322 ~~l~~e~-----~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv  366 (405)
T d1h6za3         322 EEAMPEN-----YRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNG  366 (405)
T ss_dssp             HHHSHHH-----HHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEEC
T ss_pred             hhcCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEECCEEEEEEccCC
Confidence            3345554     78999999999999999999999999999999999995

PyMOL of d1h6za3

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure