Citrus Sinensis ID: 002201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GZ42 | 1043 | Histone-lysine N-methyltr | yes | no | 0.928 | 0.849 | 0.608 | 0.0 | |
| Q9SUE7 | 1027 | Histone-lysine N-methyltr | no | no | 0.917 | 0.851 | 0.612 | 0.0 | |
| Q9M364 | 1018 | Histone-lysine N-methyltr | no | no | 0.800 | 0.750 | 0.432 | 0.0 | |
| Q9C5X4 | 1062 | Histone-lysine N-methyltr | no | no | 0.313 | 0.281 | 0.282 | 3e-30 | |
| P0CB22 | 1083 | Histone-lysine N-methyltr | no | no | 0.342 | 0.301 | 0.263 | 2e-29 | |
| Q803A0 | 829 | Protein Jade-1 OS=Danio r | yes | no | 0.157 | 0.180 | 0.365 | 5e-23 | |
| Q6GQJ2 | 827 | Protein Jade-1 OS=Xenopus | N/A | no | 0.157 | 0.181 | 0.365 | 8e-23 | |
| Q7YZH1 | 3241 | PHD finger protein rhinoc | yes | no | 0.160 | 0.047 | 0.347 | 7e-22 | |
| Q9NQC1 | 790 | Protein Jade-2 OS=Homo sa | yes | no | 0.157 | 0.189 | 0.365 | 7e-22 | |
| Q6ZPI0 | 834 | Protein Jade-1 OS=Mus mus | yes | no | 0.157 | 0.179 | 0.359 | 8e-22 |
| >sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/999 (60%), Positives = 720/999 (72%), Gaps = 113/999 (11%)
Query: 1 MIIKRKLKSQMPSLKRCKLGDSANEDNENSAKRKKRKTN---------GYYPLSLLGGEV 51
MIIKRKLK+ LKRC +S NE E+ RKKRK N YYPL+LLG E+
Sbjct: 1 MIIKRKLKT----LKRC---NSTNE--EDDIVRKKRKVNLNGGGSGGDYYYPLNLLG-EI 50
Query: 52 AAGILPLSFHGILHSEKGFAASWCTEVSCSPGEEVLKSKGSGSAGLKKPAVEVSRPPLVR 111
AGI+P + GF+ S C +VSCSP +V + K VSRPPLV+
Sbjct: 51 GAGIVP--------GKNGFSVSLCKQVSCSP--KVEVVEEEEEEEEIKSTRLVSRPPLVK 100
Query: 112 TSRGRVQVLPSRFNDSVIENWRKESKRDDCYDDEME----CKKEKFSFKTPKSYNSNVKS 167
TSRGRVQVLPSRFNDSVIENWRK++K +E C+KEK S N ++K
Sbjct: 101 TSRGRVQVLPSRFNDSVIENWRKDNKSSGEEREEEIEEEACRKEKVKV----SSNHSLKI 156
Query: 168 KSKDDKF--RYYKSCKNGTLCEEEEGDEGGFSRSFDARKYSSSKSSLTSLHEQQFIDLDN 225
K ++ KF R YK + LC E + ++ + + +Y +S + +Q+++D
Sbjct: 157 KQQETKFTPRNYKYSSSSALCGEIDDED----KCEEIVRYGNS----FEMKKQRYVD--- 205
Query: 226 DEKSPPEDIVEFTSEEGLLNGERKDDGLYGPEDFYSGDIVWAKSGKNYPYWPAIVIDPMT 285
DE P K +G+YGPEDFYSGD+VW KSG+N P+WPAIVIDPMT
Sbjct: 206 DEPRP------------------KKEGVYGPEDFYSGDLVWGKSGRNEPFWPAIVIDPMT 247
Query: 286 QAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQSELNDCKP 345
QAP++VLRSCIPDAACVMFFGH G N+RDYAWV+RG+IFPFVD+V+R QEQSEL C P
Sbjct: 248 QAPELVLRSCIPDAACVMFFGHSGTENERDYAWVRRGMIFPFVDYVERLQEQSELRGCNP 307
Query: 346 SDFQMALEEAFLADQGFTEKLIQDINMAAGNPTYDELVLKWGQEATGSNQDLDYPFIDKV 405
DFQMALEEA LADQGFTEKL+QDI+MAAGN T+D+ V +W +EA GS+Q LD+
Sbjct: 308 RDFQMALEEALLADQGFTEKLMQDIHMAAGNQTFDDSVYRWVEEAAGSSQYLDH-VAPSQ 366
Query: 406 SWAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHS 465
K ++ R C GCGM L K A+K+KA GDQL C+ C+KL K KH CGICK++WNH
Sbjct: 367 DMKKYRNPRACVGCGMVLSFKMAQKMKALIPGDQLLCQPCSKLTKPKHVCGICKRIWNHL 426
Query: 466 DGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFELSDSERGQRKVKS 525
D SWVRCDGCKVW+H+ CD+IS HFKDLG ++YYCP C+ KF+FELSDSE+ K K
Sbjct: 427 DSQSWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRTKFDFELSDSEKPDSKSKL 486
Query: 526 NKNNGQLVLPNNVTVLCSGVEGIYYPSLHLVVCKCGFCGTEKLALSDWERHTGSKLRNWR 585
KNN +VLP+ V V+CSGVEGIY+PSLHLVVCKCG CG E+ ALS+WERHTGSK +NWR
Sbjct: 487 GKNNAPMVLPDKVIVVCSGVEGIYFPSLHLVVCKCGSCGPERKALSEWERHTGSKAKNWR 546
Query: 586 TSVR-----------MLQLAEYHANTVVSAKPPKRPSMKERKQKLLAFLQEKYEPVYAKW 634
TSV+ M++LAE+HAN +AKPPKRPS+K+RKQ+LL+FL+EKYEPV KW
Sbjct: 547 TSVKVKSSKLPLEEWMMKLAEFHANAT-AAKPPKRPSIKQRKQRLLSFLREKYEPVNVKW 605
Query: 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-------- 686
TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYG RNV+DFTSWV + T
Sbjct: 606 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGTRNVRDFTSWVCKACETPEIKRECC 665
Query: 687 ----EGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICK 742
+GGALKPTDV++LWVHVTCAWFQPEV FAS+EKMEPALGIL IPS++FVKICVICK
Sbjct: 666 LCPVKGGALKPTDVETLWVHVTCAWFQPEVCFASEEKMEPALGILSIPSSNFVKICVICK 725
Query: 743 QIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYCAYHRAPNPDTFLI 802
QIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYC+YHRAPNPDT LI
Sbjct: 726 QIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYCSYHRAPNPDTVLI 785
Query: 803 IHTPLGVFSAKSLAQNKKRSGSRLISSSRTKVEEVTAVESTEIEPFSAARCRVFKRLNNN 862
I TP GVFSAKSL QNKK+SG+RLI ++R ++EE A ++ I+PFS+ARCR++KR N+
Sbjct: 786 IQTPSGVFSAKSLVQNKKKSGTRLILANREEIEESAAEDTIPIDPFSSARCRLYKRTVNS 845
Query: 863 KKRAEEEATAHKVGGACHHSLATMQSLNTFR--------------------RTEHDRVCF 902
KKR +EE H GG HH A +Q+LN FR RTE +RVCF
Sbjct: 846 KKRTKEEGIPHYTGGLRHHPSAAIQTLNAFRHVAEEPKSFSSFRERLHHLQRTEMERVCF 905
Query: 903 GRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRE 941
GRSGIHGWGLFARRNIQEGEMVLEYRGEQVR IADLRE
Sbjct: 906 GRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGIIADLRE 944
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Histone methyltransferase. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|Q9SUE7|ATX4_ARATH Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana GN=ATX3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q803A0|JADE1_DANRE Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6GQJ2|JADE1_XENLA Protein Jade-1 OS=Xenopus laevis GN=phf17 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9NQC1|JADE2_HUMAN Protein Jade-2 OS=Homo sapiens GN=PHF15 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6ZPI0|JADE1_MOUSE Protein Jade-1 OS=Mus musculus GN=Phf17 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| 224120768 | 1078 | SET domain protein [Populus trichocarpa] | 0.937 | 0.829 | 0.655 | 0.0 | |
| 449455758 | 1073 | PREDICTED: histone-lysine N-methyltransf | 0.965 | 0.858 | 0.675 | 0.0 | |
| 356507582 | 1035 | PREDICTED: histone-lysine N-methyltransf | 0.926 | 0.854 | 0.658 | 0.0 | |
| 356518627 | 1067 | PREDICTED: histone-lysine N-methyltransf | 0.957 | 0.855 | 0.664 | 0.0 | |
| 224132822 | 1070 | SET domain protein [Populus trichocarpa] | 0.935 | 0.833 | 0.646 | 0.0 | |
| 359490859 | 1094 | PREDICTED: histone-lysine N-methyltransf | 0.971 | 0.847 | 0.627 | 0.0 | |
| 357463899 | 1053 | Histone-lysine N-methyltransferase ATX5 | 0.945 | 0.856 | 0.633 | 0.0 | |
| 297792715 | 1049 | hypothetical protein ARALYDRAFT_918421 [ | 0.932 | 0.848 | 0.612 | 0.0 | |
| 297803296 | 1024 | hypothetical protein ARALYDRAFT_913734 [ | 0.918 | 0.855 | 0.611 | 0.0 | |
| 30696333 | 1043 | histone-lysine N-methyltransferase ATX5 | 0.928 | 0.849 | 0.608 | 0.0 |
| >gi|224120768|ref|XP_002318412.1| SET domain protein [Populus trichocarpa] gi|222859085|gb|EEE96632.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1306 bits (3380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1026 (65%), Positives = 767/1026 (74%), Gaps = 132/1026 (12%)
Query: 1 MIIKRKLKSQMPSLKRC-KLGDSA---NEDNENSAKRKKRK------------TNGYYPL 44
MIIKR LKSQMPSL+RC +LGD+A EDN S +RKKRK T GYYP+
Sbjct: 1 MIIKRNLKSQMPSLRRCNRLGDNAACEEEDNSASTRRKKRKLTSNNHHSNCGVTGGYYPI 60
Query: 45 SLLGGEVAAGILPLSFHGILHSEKGFAASWCTEVSCSPGEE-----VLKSKGSGSAGLKK 99
+LL EVAAG++P+S L S +GFAAS CTEVSCSP E + + +G+ G
Sbjct: 61 NLLP-EVAAGVIPVS----LKSSRGFAASLCTEVSCSPPESNGRDSMTRRAANGNGGSSN 115
Query: 100 PA---------VEVSRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKRDDCYDDEMECKK 150
VEVSRPPLVRTSRGRVQVLPSRFNDSVI+NWRKESK + +
Sbjct: 116 NTIGNDNGNRTVEVSRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTNS--------RD 167
Query: 151 EKFSFKTPKSYNSNVKSKSKDDKFRYYKSCKNGTLCEEEEGDEGGFSRSFDARKYSSSKS 210
F + + DD Y K+ +E+E
Sbjct: 168 YSFDDNDNDKDDDDYVVDDDDDDVDYDVQLKSSRKVKEKE-------------------- 207
Query: 211 SLTSLHEQQFIDLDNDEKSPPEDIVEFTSEEGLLNGERKDDGLYGPEDFYSGDIVWAKSG 270
++HE + +D++E D L +GERK+DGL+GPEDFYSGD+VWAKSG
Sbjct: 208 --RTVHENLVVVVDDNECGGVLD---------LSSGERKEDGLFGPEDFYSGDLVWAKSG 256
Query: 271 KNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCG-DVNQRDYAWVKRGLIFPFVD 329
YP+WPAIVIDPMTQAP++VLRSCI DAACVMFFG G D +QRDYAWV+RG+IFPF+D
Sbjct: 257 MKYPFWPAIVIDPMTQAPELVLRSCIADAACVMFFGCSGNDGDQRDYAWVQRGMIFPFLD 316
Query: 330 FVDRFQEQSELNDCKPSDFQMALEEAFLADQGFTEKLIQDINMAAGNPTYDELVLKWGQE 389
FVDRFQEQSEL+DCKP DFQMA+EEAFLA+QGFTEKL+QDIN AAGNP +DE V +W QE
Sbjct: 317 FVDRFQEQSELDDCKPGDFQMAVEEAFLAEQGFTEKLMQDINTAAGNPIFDESVYRWLQE 376
Query: 390 ATGSNQDLDY------PFIDKVSWAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCR 443
ATGSNQDLD+ F+D + W KN D RPC+GCG +LP K AKKIK ++ G QL C+
Sbjct: 377 ATGSNQDLDFHSPNQASFMDMI-W-KNNDTRPCEGCGTSLPLKPAKKIKGTSPGGQLLCK 434
Query: 444 TCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCP 503
TCA+L KSKHFCGICKKVWNHSD GSWVRCDGCKVWVHAECDKISS+ FKDLGG++YYCP
Sbjct: 435 TCARLTKSKHFCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNRFKDLGGTDYYCP 494
Query: 504 ACKAKFNFELSDSERGQRKVKSNKNNGQLVLPNNVTVLCSGVEGIYYPSLHLVVCKCGFC 563
ACKAKFNFELSDSE+ Q K KSN++NGQ LPN VTV+CSGVEGIY+PSLH+VVCKC FC
Sbjct: 495 ACKAKFNFELSDSEKSQLKCKSNRSNGQPALPNKVTVICSGVEGIYFPSLHMVVCKCEFC 554
Query: 564 GTEKLALSDWERHTGSKLRNWRTSVR-----------MLQLAEYHANTVVSAKPPKRPSM 612
G+EK ALS+WERHTGSK++NWRTS+R M+Q+A+YHA VS KPPKRP +
Sbjct: 555 GSEKQALSEWERHTGSKIKNWRTSIRVKDSMLPLEQWMMQIADYHAR-AVSTKPPKRPLI 613
Query: 613 KERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARN 672
KERKQKLLAFLQE+YEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARN
Sbjct: 614 KERKQKLLAFLQERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARN 673
Query: 673 VQDFTSWVFEIVYT------------EGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKM 720
VQDFTSWV + T +GGALKPTDV++LWVHVTCAWF+PEVSFASDEKM
Sbjct: 674 VQDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVETLWVHVTCAWFRPEVSFASDEKM 733
Query: 721 EPALGILCIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGR 780
EPALGIL IPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGR
Sbjct: 734 EPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGR 793
Query: 781 QITKMVSYCAYHRAPNPDTFLIIHTPLGVFSAKSLAQNKKRSGSRLISSSRTKVEEVTAV 840
Q TKM+SYCAYHRAPN DT LII TP+GVFSAK+L QNKKR+G+RLISS+RTK+EEV+
Sbjct: 794 QTTKMISYCAYHRAPNLDTVLIIQTPVGVFSAKNLVQNKKRAGTRLISSNRTKLEEVSTE 853
Query: 841 ESTEIEPFSAARCRVFKRLNNNKKRAEEEATAHKVGGACHHSLATMQSLNTFR------- 893
E+TE E SAARCRVFKR+NNNKKR EEEA +H++ CHH L +QSLN FR
Sbjct: 854 EATESESLSAARCRVFKRVNNNKKRTEEEAISHRLTRPCHHPLGEIQSLNAFRVVEEPKS 913
Query: 894 ------------------RTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRS 935
+TE+DRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVR S
Sbjct: 914 FSSFRERLYYLQASLHLSKTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGS 973
Query: 936 IADLRE 941
IADLRE
Sbjct: 974 IADLRE 979
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455758|ref|XP_004145618.1| PREDICTED: histone-lysine N-methyltransferase ATX4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356507582|ref|XP_003522543.1| PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356518627|ref|XP_003527980.1| PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224132822|ref|XP_002321418.1| SET domain protein [Populus trichocarpa] gi|222868414|gb|EEF05545.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359490859|ref|XP_002268525.2| PREDICTED: histone-lysine N-methyltransferase ATX4-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357463899|ref|XP_003602231.1| Histone-lysine N-methyltransferase ATX5 [Medicago truncatula] gi|355491279|gb|AES72482.1| Histone-lysine N-methyltransferase ATX5 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297792715|ref|XP_002864242.1| hypothetical protein ARALYDRAFT_918421 [Arabidopsis lyrata subsp. lyrata] gi|297310077|gb|EFH40501.1| hypothetical protein ARALYDRAFT_918421 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|297803296|ref|XP_002869532.1| hypothetical protein ARALYDRAFT_913734 [Arabidopsis lyrata subsp. lyrata] gi|297315368|gb|EFH45791.1| hypothetical protein ARALYDRAFT_913734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30696333|ref|NP_200155.2| histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] gi|75244456|sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 gi|26449542|dbj|BAC41897.1| putative trithorax 5 TX5 [Arabidopsis thaliana] gi|29029074|gb|AAO64916.1| At5g53430 [Arabidopsis thaliana] gi|332008970|gb|AED96353.1| histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| TAIR|locus:2178446 | 1043 | SDG29 "AT5G53430" [Arabidopsis | 0.476 | 0.436 | 0.643 | 2.5e-228 | |
| TAIR|locus:2132912 | 1027 | SDG16 "SET domain protein 16" | 0.448 | 0.416 | 0.652 | 1.6e-226 | |
| TAIR|locus:2076755 | 1018 | SDG14 "SET domain protein 14" | 0.734 | 0.688 | 0.443 | 3.3e-205 | |
| TAIR|locus:2198743 | 1083 | ATX2 "trithorax-like protein 2 | 0.201 | 0.177 | 0.273 | 1.1e-30 | |
| TAIR|locus:2065923 | 1062 | ATX1 "homologue of trithorax" | 0.262 | 0.235 | 0.289 | 8.4e-27 | |
| UNIPROTKB|B5MBX1 | 509 | PHF15 "Protein Jade-2" [Homo s | 0.162 | 0.304 | 0.360 | 2.5e-20 | |
| UNIPROTKB|Q5E9T7 | 509 | PHF17 "Protein Jade-1" [Bos ta | 0.157 | 0.294 | 0.365 | 4.2e-20 | |
| UNIPROTKB|Q9NQC1 | 790 | PHF15 "Protein Jade-2" [Homo s | 0.162 | 0.196 | 0.360 | 7.5e-20 | |
| UNIPROTKB|D3DQA3 | 791 | PHF15 "PHD finger protein 15, | 0.162 | 0.195 | 0.360 | 7.5e-20 | |
| UNIPROTKB|G3XAA4 | 834 | PHF15 "Protein Jade-2" [Homo s | 0.162 | 0.185 | 0.360 | 8.3e-20 |
| TAIR|locus:2178446 SDG29 "AT5G53430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1700 (603.5 bits), Expect = 2.5e-228, Sum P(3) = 2.5e-228
Identities = 307/477 (64%), Positives = 371/477 (77%)
Query: 222 DLDNDEKSPPEDIVEFTS-----EEGLLNGER--KDDGLYGPEDFYSGDIVWAKSGKNYP 274
++D+++K E+IV + + ++ ++ E K +G+YGPEDFYSGD+VW KSG+N P
Sbjct: 179 EIDDEDKC--EEIVRYGNSFEMKKQRYVDDEPRPKKEGVYGPEDFYSGDLVWGKSGRNEP 236
Query: 275 YWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRF 334
+WPAIVIDPMTQAP++VLRSCIPDAACVMFFGH G N+RDYAWV+RG+IFPFVD+V+R
Sbjct: 237 FWPAIVIDPMTQAPELVLRSCIPDAACVMFFGHSGTENERDYAWVRRGMIFPFVDYVERL 296
Query: 335 QEQSELNDCKPSDFQMALEEAFLADQGFTEKLIQDINMAAGNPTYDELVLKWGQEATGSN 394
QEQSEL C P DFQMALEEA LADQGFTEKL+QDI+MAAGN T+D+ V +W +EA GS+
Sbjct: 297 QEQSELRGCNPRDFQMALEEALLADQGFTEKLMQDIHMAAGNQTFDDSVYRWVEEAAGSS 356
Query: 395 QDLDYPFIDKVSWAKNKDKRPCDGCGMTLPXXXXXXXXXXTTGDQLFCRTCAKLMKSKHF 454
Q LD+ K ++ R C GCGM L GDQL C+ C+KL K KH
Sbjct: 357 QYLDH-VAPSQDMKKYRNPRACVGCGMVLSFKMAQKMKALIPGDQLLCQPCSKLTKPKHV 415
Query: 455 CGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFELS 514
CGICK++WNH D SWVRCDGCKVW+H+ CD+IS HFKDLG ++YYCP C+ KF+FELS
Sbjct: 416 CGICKRIWNHLDSQSWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRTKFDFELS 475
Query: 515 DSERGQRKVKSNKNNGQLVLPNNVTVLCSGVEGIYYPSLHLVVCKCGFCGTEKLALSDWE 574
DSE+ K K KNN +VLP+ V V+CSGVEGIY+PSLHLVVCKCG CG E+ ALS+WE
Sbjct: 476 DSEKPDSKSKLGKNNAPMVLPDKVIVVCSGVEGIYFPSLHLVVCKCGSCGPERKALSEWE 535
Query: 575 RHTGSKLRNWRTSVR-----------MLQLAEYHANTVVSAKPPKRPSMKERKQKLLAFL 623
RHTGSK +NWRTSV+ M++LAE+HAN +AKPPKRPS+K+RKQ+LL+FL
Sbjct: 536 RHTGSKAKNWRTSVKVKSSKLPLEEWMMKLAEFHANAT-AAKPPKRPSIKQRKQRLLSFL 594
Query: 624 QEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWV 680
+EKYEPV KWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYG RNV+DFTSWV
Sbjct: 595 REKYEPVNVKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGTRNVRDFTSWV 651
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| TAIR|locus:2132912 SDG16 "SET domain protein 16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076755 SDG14 "SET domain protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2198743 ATX2 "trithorax-like protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B5MBX1 PHF15 "Protein Jade-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5E9T7 PHF17 "Protein Jade-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NQC1 PHF15 "Protein Jade-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D3DQA3 PHF15 "PHD finger protein 15, isoform CRA_b" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3XAA4 PHF15 "Protein Jade-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GZ42 | ATX5_ARATH | 2, ., 1, ., 1, ., 4, 3 | 0.6086 | 0.9287 | 0.8494 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.946 |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 954 | |||
| cd05838 | 95 | cd05838, WHSC1_related, The PWWP domain was first | 3e-36 | |
| pfam13832 | 109 | pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma | 5e-31 | |
| COG5141 | 669 | COG5141, COG5141, PHD zinc finger-containing prote | 8e-23 | |
| pfam13771 | 89 | pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai | 3e-12 | |
| cd05162 | 87 | cd05162, PWWP, The PWWP domain, named for a conser | 2e-10 | |
| pfam00855 | 74 | pfam00855, PWWP, PWWP domain | 2e-08 | |
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 2e-07 | |
| smart00293 | 63 | smart00293, PWWP, domain with conserved PWWP motif | 3e-07 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 4e-07 | |
| cd05834 | 83 | cd05834, HDGF_related, The PWWP domain is an essen | 7e-07 | |
| cd05836 | 86 | cd05836, N_Pac_NP60, The PWWP domain is an essenti | 2e-06 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 3e-06 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 5e-06 | |
| cd05840 | 93 | cd05840, SPBC215_ISWI_like, The PWWP domain is a c | 2e-04 | |
| cd05839 | 111 | cd05839, BR140_related, The PWWP domain is found i | 2e-04 | |
| pfam13831 | 33 | pfam13831, PHD_2, PHD-finger | 4e-04 |
| >gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-36
Identities = 46/105 (43%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAP-DVVLRSCIPDAACVMFFGHCGDVNQRDYA 317
GDIVWAK G N+ +WPAI+ DP P VLR C CVMFFG DY
Sbjct: 1 PLYGDIVWAKLG-NFRWWPAIICDPREVPPNIQVLRHC-IGEFCVMFFG------THDYY 52
Query: 318 WVKRGLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEAFLADQGF 362
WV RG +FP+ + F+EQ++ F+ ALEEA LA +G
Sbjct: 53 WVHRGRVFPYQEGDKGFKEQTKS--YLAKRFRKALEEASLAFKGL 95
|
When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. Length = 95 |
| >gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain | Back alignment and domain information |
|---|
| >gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids | Back alignment and domain information |
|---|
| >gnl|CDD|216154 pfam00855, PWWP, PWWP domain | Back alignment and domain information |
|---|
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF | Back alignment and domain information |
|---|
| >gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha | Back alignment and domain information |
|---|
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the S | Back alignment and domain information |
|---|
| >gnl|CDD|99900 cd05839, BR140_related, The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 | Back alignment and domain information |
|---|
| >gnl|CDD|222406 pfam13831, PHD_2, PHD-finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 99.97 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 99.96 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 99.96 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 99.96 | |
| cd05838 | 95 | WHSC1_related The PWWP domain was first identified | 99.91 | |
| cd05836 | 86 | N_Pac_NP60 The PWWP domain is an essential part of | 99.86 | |
| cd05834 | 83 | HDGF_related The PWWP domain is an essential part | 99.85 | |
| cd05835 | 87 | Dnmt3b_related The PWWP domain is an essential com | 99.85 | |
| cd05162 | 87 | PWWP The PWWP domain, named for a conserved Pro-Tr | 99.85 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 99.84 | |
| PF00855 | 86 | PWWP: PWWP domain; InterPro: IPR000313 Upon charac | 99.82 | |
| cd05840 | 93 | SPBC215_ISWI_like The PWWP domain is a component o | 99.82 | |
| PF13832 | 110 | zf-HC5HC2H_2: PHD-zinc-finger like domain | 99.8 | |
| cd05837 | 110 | MSH6_like The PWWP domain is present in MSH6, a mi | 99.77 | |
| smart00293 | 63 | PWWP domain with conserved PWWP motif. conservatio | 99.75 | |
| cd05841 | 83 | BS69_related The PWWP domain is part of BS69 prote | 99.75 | |
| cd05839 | 111 | BR140_related The PWWP domain is found in the BR14 | 99.66 | |
| cd06080 | 80 | MUM1_like Mutated melanoma-associated antigen 1 (M | 99.62 | |
| KOG1904 | 496 | consensus Transcription coactivator [Transcription | 99.34 | |
| PF13771 | 90 | zf-HC5HC2H: PHD-like zinc-binding domain | 99.32 | |
| smart00258 | 73 | SAND SAND domain. | 98.92 | |
| PF01342 | 82 | SAND: SAND domain; InterPro: IPR000770 The SAND do | 98.85 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 98.82 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 98.7 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 98.63 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 98.53 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.42 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.0 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 97.82 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.77 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.64 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.51 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.46 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 97.45 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 97.42 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.4 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 97.37 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 97.12 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 96.99 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 96.91 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.68 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 96.66 | |
| PF07227 | 446 | DUF1423: Protein of unknown function (DUF1423); In | 95.92 | |
| PF15446 | 175 | zf-PHD-like: PHD/FYVE-zinc-finger like domain | 95.7 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 95.4 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 94.74 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 94.48 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 93.21 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 92.23 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 90.4 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 89.66 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 89.47 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 89.31 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 89.29 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 88.13 | |
| KOG1084 | 375 | consensus Transcription factor TCF20 [Transcriptio | 87.7 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 87.7 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 87.52 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 87.19 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 86.66 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 86.64 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 86.1 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 85.02 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 82.8 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 82.34 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 80.15 |
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=674.23 Aligned_cols=826 Identities=43% Similarity=0.715 Sum_probs=627.7
Q ss_pred Cccccccccc-CCccccccCCCCCCccccchhhhcccc--------CCC-cccccccCccccCCccccccccccccccce
Q 002201 1 MIIKRKLKSQ-MPSLKRCKLGDSANEDNENSAKRKKRK--------TNG-YYPLSLLGGEVAAGILPLSFHGILHSEKGF 70 (954)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (954)
||+||.++.+ .++|+||+.+..-+- .++|++ +|. ++|.|++ ++++++.+|- .+.+.+
T Consensus 1 ~~~~r~~~~~~~~~~rrc~~~~e~~~------~~~k~~~~~~~~~~~~~~~~~~n~~-~~~~~~~vp~------~t~~~~ 67 (1005)
T KOG1080|consen 1 MILKRILTTFGNRNLRRCKIGTEIEY------GRKKGEIIVYKKLQRASVDQPCNSV-PELLTSSVPS------LTSKEE 67 (1005)
T ss_pred CccccccccCCccchhhhccCCcccc------ccccceeEeeccccccccccccccc-ccccccCCCC------CCCCCc
Confidence 8999999997 999999999754321 344444 333 8999999 9999998883 256888
Q ss_pred eeeecccccCCCccccccccCCCCCCCCCCCccccCCCccccCCcceeccCCcccccccccccccccCCCCcchh----h
Q 002201 71 AASWCTEVSCSPGEEVLKSKGSGSAGLKKPAVEVSRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKRDDCYDDE----M 146 (954)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srgr~~~~psrf~ds~~~~w~~~~~~~~~~~~~----~ 146 (954)
..+||.+.+ +.|||||++++||||+|+++.+|+++.+.+...+.. +
T Consensus 68 ~~sv~~~t~------------------------------~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~ 117 (1005)
T KOG1080|consen 68 SQSVCSDTS------------------------------KKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKV 117 (1005)
T ss_pred ceeeeecCC------------------------------CccccCCcccccccccccccccCCcccccccccCcceeeec
Confidence 888987732 789999999999999999999999999877776662 2
Q ss_pred hhhccccccccccccccccccCCCCcccc--cccccccccccccccCCCCCcccccccccccCCcccccccccccccccc
Q 002201 147 ECKKEKFSFKTPKSYNSNVKSKSKDDKFR--YYKSCKNGTLCEEEEGDEGGFSRSFDARKYSSSKSSLTSLHEQQFIDLD 224 (954)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (954)
.++.+++..-++- ..++.+...|+- =++.++.+.+| .+. +.++.. .+....
T Consensus 118 ~~~~~k~~~s~~~----~~~~~~~~s~~~~~~~~~~ss~~~~--~~~-----------~~~s~~----------~~~~i~ 170 (1005)
T KOG1080|consen 118 NSEFEEVKVSSGS----SKLHPSKDSKVFPRKDNPDSSEVSC--IDY-----------WEASQD----------RYDEIV 170 (1005)
T ss_pred ccccCCceeccCc----cccCcccccccCCcCCCCcccccch--hhh-----------hhcccC----------ccccee
Confidence 2333332211111 111222221000 00011111222 000 001100 000111
Q ss_pred cCCCCCCccccccccccccccCCCCCCCCcCCCCCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEE
Q 002201 225 NDEKSPPEDIVEFTSEEGLLNGERKDDGLYGPEDFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMF 304 (954)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~F 304 (954)
...-+ +..-...+.+.|.+++|.+||+||++.+++.|.|||.++++..+++..++..+.+...+|+|
T Consensus 171 ~~~~~-------------p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~~~~~v~as~~~~~~~~~~ 237 (1005)
T KOG1080|consen 171 ANDGM-------------PLKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQAPRGVLASCLPVAACVMF 237 (1005)
T ss_pred eccCC-------------cCcccccccccccCcccccchhhhcccccCCcccccceeehhhcchhhhhccCcchhhhhee
Confidence 11111 12224556688999999999999999988999999999999989999999999988899999
Q ss_pred ccccCCCCCCcEEEeeCCceecCccchhhhcccccCCCCChhHHHHHHHHHHHHHhhhhHhhhhhhhhccCCCCCchhhh
Q 002201 305 FGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEAFLADQGFTEKLIQDINMAAGNPTYDELVL 384 (954)
Q Consensus 305 FG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q~~~~k~k~~~f~~AleEA~~a~~g~~e~~~~~~~~~~~~~~~~~s~~ 384 (954)
|+++...+..+|+|+.+.++.+|....+.++.|+.+...+...|++++++|.+|++++.+..++++.+..++...+.+..
T Consensus 238 ~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1005)
T KOG1080|consen 238 FGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKDVDDAHLITGDSSATDSAL 317 (1005)
T ss_pred eeccCCccccchhhhhhccccccchhhhhccccccccccCccchhHHHHHhhccccccccccccchhhhcCCCccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred hhhccccCCCCCCCccccccc-------ccccCCCCccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCcccc
Q 002201 385 KWGQEATGSNQDLDYPFIDKV-------SWAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGI 457 (954)
Q Consensus 385 ~~~~e~~~~~~~~~~~~~~Q~-------~~~kck~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpi 457 (954)
.+..+...+.+..+-....+. .+.+--.-..|.+|..........+++..-....++|..|..+......|.+
T Consensus 318 ~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~k~~~~~~~s~~~~g~ 397 (1005)
T KOG1080|consen 318 SEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPAQGLLCKECSDETKSNQTCGI 397 (1005)
T ss_pred hccccccccccccccccCCccccccccCCCccccccccccccCCCCchhhccccCcccccchhhhhhhhchhhccccccc
Confidence 777777777766555555553 2233445566777776666555555555544577999999999999999999
Q ss_pred ccccccCCCCCCeeeCCCCCceeeccccccccccccccC--CCcc---------------cCCccccccccccccccccc
Q 002201 458 CKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLG--GSEY---------------YCPACKAKFNFELSDSERGQ 520 (954)
Q Consensus 458 C~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~--~~~Y---------------~Cp~Cr~k~~~~~~~~~~~~ 520 (954)
|...+++.+..+|+.|+.|+-|+|+.|+.+....+.... ...| +|+.|+-.+...
T Consensus 398 ~~~~~~~~~~~d~~~~~~c~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-------- 469 (1005)
T KOG1080|consen 398 CKRIWHSSDSGDWVRCDGCDVWIHARCDKISSEKFKYSSSGMHNYQTLNFPQEYTALNLSYCPKCKLTFDDL-------- 469 (1005)
T ss_pred cceecccccccceeeecccccceeeccCcccccccccccccccccccccchhhhhhhhccccchhheecccc--------
Confidence 999999999999999999999999999988776643321 1122 344443332111
Q ss_pred cccccccCCCCccCCCceeeeecccceeeeccccceeeeecccCCcccccchhhhccCCCcccccccch----hhhhhHh
Q 002201 521 RKVKSNKNNGQLVLPNNVTVLCSGVEGIYYPSLHLVVCKCGFCGTEKLALSDWERHTGSKLRNWRTSVR----MLQLAEY 596 (954)
Q Consensus 521 ~k~k~~~~~~~~~~p~~~~v~c~~veG~~~~~~~gi~ckC~~c~~~~~spsefE~h~G~r~K~wk~Sir----m~~l~~~ 596 (954)
...+. | +.++-+.+.+..+.-++..+++|++|++.+++.|+.+.+ +.++-+|
T Consensus 470 --------s~~~~-~---------------~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~ 525 (1005)
T KOG1080|consen 470 --------STDLS-P---------------AALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKW 525 (1005)
T ss_pred --------cccCC-c---------------chheeeecccCcchhhhhcccchhhhhcccccccccccccccccccchhh
Confidence 00000 1 122355677888888889999999999999999999988 3333333
Q ss_pred h-------hcccccCCCCCCCchHHHH--HHHHHHHhhccccccccCCCCcccccCCCccCCCCceEEcCCCCccccCcc
Q 002201 597 H-------ANTVVSAKPPKRPSMKERK--QKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQEC 667 (954)
Q Consensus 597 ~-------~~~~~~~~~~~~~~~k~~k--q~l~~~l~~~~~pv~~~~~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~C 667 (954)
. .++ .....|+.+..-.+. +.++..+...+.|...+|+.+.|.+|.+.+.+..|..+.|+.|.+++|+.|
T Consensus 526 ~~~~~~~~~~~-~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~ 604 (1005)
T KOG1080|consen 526 VESRGRSIMNT-YNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSEC 604 (1005)
T ss_pred hhhcccccccc-ccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeeccccccCCCcc
Confidence 2 222 122223333333333 445556667788999999999999999999999999999999999999999
Q ss_pred ccCccccCCCceeEecccc------------CcCCCCcccCCCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCc
Q 002201 668 YGARNVQDFTSWVFEIVYT------------EGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFV 735 (954)
Q Consensus 668 yGv~~~p~~~~W~C~~C~~------------~gGaLK~t~~~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~ 735 (954)
||....+....|.|+.|.. ++|||++++ .+.|+|+.||+|.|++.+.+...|+|+.++..+++..+.
T Consensus 605 ~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d-~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~ 683 (1005)
T KOG1080|consen 605 YGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTD-EGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFL 683 (1005)
T ss_pred cccCCCCCCCcchhhccccccCCchhhhccccCcccCCCC-ccchhhhhchhccccccCCCccCCCCcccccccCccchh
Confidence 9999998888999999995 899999998 999999999999999999999999999999999999999
Q ss_pred eeEeeeccCCCeeeecCCcCcccchhhhhhcCCeEEEEeeccCCccccceEEeCCCCCCCCCCceeeeeCCcccchhhHh
Q 002201 736 KICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYCAYHRAPNPDTFLIIHTPLGVFSAKSL 815 (954)
Q Consensus 736 ~~C~iC~~~~Ga~IqC~~C~~aFHv~CA~~aGl~me~~~~~~~g~~~~~~~~yC~~H~~~~~d~v~~~~~~~G~~s~k~~ 815 (954)
..|.+ .|.|.||..|...||.+||..+|+.++...++..+.+.+...- |..+.++.++.++++.+.+..+.+
T Consensus 684 ~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~d~~l~~~~~~~~~~~~~~ 755 (1005)
T KOG1080|consen 684 KICFI----HGSCRQCCKCETGSHAMCASRAGYIMEAVSLEEVSQQTTSYVK----EDGPGPDSVLKVNTPSGKFGAENL 755 (1005)
T ss_pred hhccc----cccccccchhhhcceehhhcCccChhhhhhhhhhhhhhhhhhh----hccCCcccceeecCccccccccch
Confidence 98888 6889999999999999999999999987766665554433322 888899999999999999999877
Q ss_pred hhccc--cCCcccccccccc--ccc--ccccccCcCCchhHHHHhhhhhhccccchhhHhhhcccccccccCchhhhhhh
Q 002201 816 AQNKK--RSGSRLISSSRTK--VEE--VTAVESTEIEPFSAARCRVFKRLNNNKKRAEEEATAHKVGGACHHSLATMQSL 889 (954)
Q Consensus 816 ~~n~k--~~~~rl~s~~R~~--lpe--~~~~e~~~~~p~~~aR~~~~~R~~~~~kr~~~~~i~~~~~g~~~~~~~~i~~~ 889 (954)
.++++ ..+.+....++.. +++ ...+...++++.+.+|++.+.|..+..++.......+...|...|......++
T Consensus 756 ~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl 835 (1005)
T KOG1080|consen 756 SQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEERL 835 (1005)
T ss_pred hhhhhccccccccccccccccccccchhcccCCcccCccccccccchhhcccccccccccccccccccccccchhHHhhh
Confidence 77665 4444444444332 222 22233456788888999999988878888877777777777777777776666
Q ss_pred hhcc----------------------cccCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhhh
Q 002201 890 NTFR----------------------RTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCCS 947 (954)
Q Consensus 890 ~~~~----------------------~~~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~~ 947 (954)
++++ +.++++|.|++|+||||||||+++|.+|||||||+||+||+.+||+||++|+.-
T Consensus 836 ~q~rl~a~~~~~~~~~~~~~~~~~~~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~ 915 (1005)
T KOG1080|consen 836 NQFRLSASFTASFILDEAEVLRYNQLKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERM 915 (1005)
T ss_pred HHHHhhhhcccccccchHHHHHHHHHhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhcc
Confidence 6554 556788999999999999999999999999999999999999999999999985
Q ss_pred c-ccc
Q 002201 948 F-SRS 951 (954)
Q Consensus 948 ~-~~~ 951 (954)
. ++|
T Consensus 916 gi~~s 920 (1005)
T KOG1080|consen 916 GIGDS 920 (1005)
T ss_pred Ccccc
Confidence 4 443
|
|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) | Back alignment and domain information |
|---|
| >cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha | Back alignment and domain information |
|---|
| >cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF | Back alignment and domain information |
|---|
| >cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis | Back alignment and domain information |
|---|
| >cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] | Back alignment and domain information |
|---|
| >cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S | Back alignment and domain information |
|---|
| >PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain | Back alignment and domain information |
|---|
| >cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS | Back alignment and domain information |
|---|
| >smart00293 PWWP domain with conserved PWWP motif | Back alignment and domain information |
|---|
| >cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions | Back alignment and domain information |
|---|
| >cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 | Back alignment and domain information |
|---|
| >cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) | Back alignment and domain information |
|---|
| >KOG1904 consensus Transcription coactivator [Transcription] | Back alignment and domain information |
|---|
| >PF13771 zf-HC5HC2H: PHD-like zinc-binding domain | Back alignment and domain information |
|---|
| >smart00258 SAND SAND domain | Back alignment and domain information |
|---|
| >PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control | Back alignment and domain information |
|---|
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] | Back alignment and domain information |
|---|
| >PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain | Back alignment and domain information |
|---|
| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1084 consensus Transcription factor TCF20 [Transcription] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 954 | ||||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 2e-06 | ||
| 2daq_A | 110 | Solution Structure Of Second Pwwp Domain Of Whsc1l1 | 2e-05 |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
|
| >pdb|2DAQ|A Chain A, Solution Structure Of Second Pwwp Domain Of Whsc1l1 Protein Length = 110 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 8e-21
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 257 EDFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDY 316
+ IVW K NY +WPA + +P + ++ V FFG DY
Sbjct: 7 GKLHYKQIVWVKL-GNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG------SHDY 59
Query: 317 AWVKRGLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEA 355
WV +G +FP+V+ F E F+ ALEEA
Sbjct: 60 YWVHQGRVFPYVEGDKSFAEGQT---SINKTFKKALEEA 95
|
| >2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108 | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
| >3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154 | Back alignment and structure |
|---|
| >2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Length = 158 | Back alignment and structure |
|---|
| >3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Length = 130 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| 2daq_A | 110 | WHSC1L1 protein, isoform long; PWWP domain, struct | 99.88 | |
| 3qby_A | 94 | Hepatoma-derived growth factor-related protein 2; | 99.85 | |
| 2gfu_A | 134 | DNA mismatch repair protein MSH6; PWWP domain, tud | 99.84 | |
| 4fu6_A | 153 | PC4 and SFRS1-interacting protein; structural geno | 99.83 | |
| 2l89_A | 108 | PWWP domain-containing protein 1; histone binding, | 99.83 | |
| 3llr_A | 154 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 99.81 | |
| 3pfs_A | 158 | Bromodomain and PHD finger-containing protein 3; s | 99.8 | |
| 1ri0_A | 110 | Hepatoma-derived growth factor; HDGF, HATH domain, | 99.8 | |
| 1khc_A | 147 | DNA cytosine-5 methyltransferase 3B2; five beta-sh | 99.8 | |
| 1h3z_A | 109 | Hypothetical 62.8 kDa protein C215.07C; nuclear pr | 99.79 | |
| 3l42_A | 130 | Peregrin; transcription regulation, histone H3 ace | 99.77 | |
| 2lq6_A | 87 | Bromodomain-containing protein 1; PHD finger, meta | 99.22 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.13 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 98.91 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 98.88 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 98.82 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.81 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 98.81 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.79 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 98.77 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 98.72 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 98.69 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 98.69 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 98.68 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 98.67 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 98.67 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 98.66 | |
| 1h5p_A | 95 | Nuclear autoantigen SP100-B; transcription, DNA bi | 98.63 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 98.61 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 98.61 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.6 | |
| 1ufn_A | 94 | Putative nuclear protein homolog 5830484A20RIK; SA | 98.58 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.56 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 98.53 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 98.53 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 98.51 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 98.51 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 98.5 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 98.5 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 98.49 | |
| 1oqj_A | 97 | Glucocorticoid modulatory element binding protein- | 98.47 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 98.47 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 98.45 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 98.45 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 98.44 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.44 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 98.44 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 98.41 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.4 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.37 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 98.36 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 98.34 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 98.33 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 98.26 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 98.24 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 98.24 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 98.22 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 98.21 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 98.19 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 98.18 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 98.16 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 98.15 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 98.15 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 98.13 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 98.13 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 98.13 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 98.13 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 98.12 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 98.09 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 98.09 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 98.04 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.97 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 97.93 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 97.89 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 97.86 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 97.82 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 97.82 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 97.78 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.76 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 97.73 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 97.71 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.71 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 97.68 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 97.62 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 97.61 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 97.39 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 97.34 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 97.32 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 97.32 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 97.3 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 97.29 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 97.28 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 97.26 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.26 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 97.26 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 97.24 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 97.24 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 97.23 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 97.21 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 97.2 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 97.2 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 97.16 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.01 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.0 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 97.0 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 97.0 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 96.92 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 96.91 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 96.91 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 96.89 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 96.8 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 96.79 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 96.71 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 96.71 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 96.67 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 96.64 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 96.6 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 96.5 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 96.45 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 96.41 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 96.39 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 96.37 | |
| 3pmi_A | 134 | PWWP domain-containing protein MUM1; structural ge | 96.34 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 96.33 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 96.11 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 96.02 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 95.99 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 95.92 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 95.91 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 95.81 | |
| 3rsn_A | 177 | SET1/ASH2 histone methyltransferase complex subun; | 95.7 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 95.68 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 95.59 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 95.49 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 95.39 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 95.34 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 95.28 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 95.03 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 94.57 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 94.46 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 93.88 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 93.39 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 92.89 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 90.96 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 89.22 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 87.77 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 86.23 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 84.81 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 84.68 | |
| 2f5k_A | 102 | MORF-related gene 15 isoform 1; beta barrel, gene | 83.49 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 82.34 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 82.3 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 82.0 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 80.88 | |
| 2pv0_B | 386 | DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, | 80.81 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 80.75 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 80.62 |
| >2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-23 Score=194.12 Aligned_cols=98 Identities=34% Similarity=0.610 Sum_probs=81.1
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCC-CCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhcc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCI-PDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQE 336 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~-~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~ 336 (954)
.|.+||||||||+ +||||||+|++|. .+|+.+++.++ .+.++|+||| +++|+||++.+|+||.++.++|.
T Consensus 8 ~~~~GdlVwaK~~-g~p~WPa~V~~~~-~~p~~~~~~~~~~~~~~V~FFg------~~~~awv~~~~l~p~~~~~~~~~- 78 (110)
T 2daq_A 8 KLHYKQIVWVKLG-NYRWWPAEICNPR-SVPLNIQGLKHDLGDFPVFFFG------SHDYYWVHQGRVFPYVEGDKSFA- 78 (110)
T ss_dssp SCCSSEEEEEECS-SSCEEEEEECCTT-TSCHHHHTSCCCSSCEEEEETT------TTEEEEECSSSSEECCSSCCSSS-
T ss_pred CCCCCCEEEEEeC-CCCCCceeeCChh-hCCHHHhhccCCCCcEEEEEec------CCCEEEEcHHHCcCcchhhHHHh-
Confidence 4789999999997 7999999999998 88999876554 6789999999 99999999999999999877663
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhHhhhhh
Q 002201 337 QSELNDCKPSDFQMALEEAFLADQGFTEKLIQD 369 (954)
Q Consensus 337 q~~~~k~k~~~f~~AleEA~~a~~g~~e~~~~~ 369 (954)
+. .+.+...|++||+|| +++|.+.++++
T Consensus 79 ~~--~~~~~k~f~~Al~eA---~~~~~~~~~~r 106 (110)
T 2daq_A 79 EG--QTSINKTFKKALEEA---AKRFQELKASG 106 (110)
T ss_dssp CS--SCCCCSHHHHHHHHH---HHHHHHHHSSC
T ss_pred hh--cccchHHHHHHHHHH---HHHHHHHHhhh
Confidence 22 223345999999999 66677766655
|
| >3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A | Back alignment and structure |
|---|
| >2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A | Back alignment and structure |
|---|
| >2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0 | Back alignment and structure |
|---|
| >3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* | Back alignment and structure |
|---|
| >1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A | Back alignment and structure |
|---|
| >1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* | Back alignment and structure |
|---|
| >3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* | Back alignment and structure |
|---|
| >2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens} | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 954 | ||||
| d2daqa1 | 97 | b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer | 4e-19 | |
| d2nlua1 | 100 | b.34.9.2 (A:1-100) Hepatoma-derived growth factor, | 3e-16 | |
| d1khca_ | 137 | b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse | 2e-13 | |
| d1h3za_ | 108 | b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi | 4e-13 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 8e-09 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 1e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 3e-07 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 4e-07 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 9e-07 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 1e-06 | |
| d1ufna_ | 94 | d.217.1.1 (A:) Putative nuclear protein homolog 58 | 1e-06 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 1e-05 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 4e-05 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 5e-04 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 7e-05 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 8e-05 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 0.001 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 0.002 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 0.004 |
| >d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: PWWP domain domain: Histone-lysine N-methyltransferase NSD3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.8 bits (199), Expect = 4e-19
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKR 321
IVW K NY +WPA + +P + ++ V FFG DY WV +
Sbjct: 5 KQIVWVKL-GNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG------SHDYYWVHQ 57
Query: 322 GLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEA 355
G +FP+V+ F E F+ ALEEA
Sbjct: 58 GRVFPYVEGDKSFAEGQT---SINKTFKKALEEA 88
|
| >d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
| >d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 | Back information, alignment and structure |
|---|
| >d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
| >d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| d2daqa1 | 97 | Histone-lysine N-methyltransferase NSD3 {Human (Ho | 99.88 | |
| d2nlua1 | 100 | Hepatoma-derived growth factor, HDGF {Human (Homo | 99.83 | |
| d1h3za_ | 108 | Hypothetical protein SPBC215.07c {Fission yeast (S | 99.82 | |
| d1khca_ | 137 | DNA methyltransferase DNMT3B {Mouse (Mus musculus) | 99.79 | |
| d1ufna_ | 94 | Putative nuclear protein homolog 5830484a20rik {Mo | 99.04 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 98.78 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 98.74 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 98.65 | |
| d1h5pa_ | 95 | Nuclear autoantigen Sp100b {Human (Homo sapiens) [ | 98.59 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 98.57 | |
| d1oqja_ | 90 | Glucocorticoid modulatory element binding protein- | 98.45 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 98.37 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 98.31 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.28 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.17 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.02 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 98.01 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.0 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.98 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 97.93 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 97.89 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.85 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.85 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 97.82 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.69 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.66 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.59 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.02 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 96.91 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.76 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.5 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.44 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 94.64 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 93.53 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 88.34 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 84.74 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 82.44 |
| >d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: PWWP domain domain: Histone-lysine N-methyltransferase NSD3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.7e-23 Score=188.61 Aligned_cols=90 Identities=36% Similarity=0.624 Sum_probs=75.8
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCC-CCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhcc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCI-PDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQE 336 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~-~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~ 336 (954)
.|.+|||||||++ +||||||+|++|. .+++.++...+ ++.++|+||| +++|+||++.+|+||.++..++..
T Consensus 1 k~~~GdlVWaK~~-g~pwWPa~V~~~~-~~~~~~~~~~~~~~~~~V~FFg------~~~~awv~~~~l~~f~e~~~~~~~ 72 (97)
T d2daqa1 1 KLHYKQIVWVKLG-NYRWWPAEICNPR-SVPLNIQGLKHDLGDFPVFFFG------SHDYYWVHQGRVFPYVEGDKSFAE 72 (97)
T ss_dssp SCCSSEEEEEECS-SSCEEEEEECCTT-TSCHHHHTSCCCSSCEEEEETT------TTEEEEECSSSSEECCSSCCSSSC
T ss_pred CCcCCCEEEEEcC-CcCCCceEEcCHH-HhhhHhhhcCCCCCeEEEEEcc------CCCEEEECHHHCcCchhhhHHHHH
Confidence 3789999999998 7999999999998 88998876555 6789999999 999999999999999988766643
Q ss_pred cccCCCCChhHHHHHHHHHHHH
Q 002201 337 QSELNDCKPSDFQMALEEAFLA 358 (954)
Q Consensus 337 q~~~~k~k~~~f~~AleEA~~a 358 (954)
. .+.+...|++||+||..+
T Consensus 73 ~---~k~~~~~~~~Av~eA~~~ 91 (97)
T d2daqa1 73 G---QTSINKTFKKALEEAAKR 91 (97)
T ss_dssp S---SCCCCSHHHHHHHHHHHH
T ss_pred h---cccchHHHHHHHHHHHHH
Confidence 3 233335899999999554
|
| >d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|