Citrus Sinensis ID: 002210
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | 2.2.26 [Sep-21-2011] | |||||||
| Q10CQ8 | 1137 | Phytochrome C OS=Oryza sa | yes | no | 0.993 | 0.832 | 0.704 | 0.0 | |
| A2XM23 | 1137 | Phytochrome C OS=Oryza sa | N/A | no | 0.993 | 0.832 | 0.703 | 0.0 | |
| P93528 | 1135 | Phytochrome C OS=Sorghum | N/A | no | 0.994 | 0.835 | 0.704 | 0.0 | |
| P14714 | 1111 | Phytochrome C OS=Arabidop | yes | no | 0.985 | 0.845 | 0.658 | 0.0 | |
| Q40762 | 1136 | Phytochrome OS=Picea abie | N/A | no | 0.975 | 0.818 | 0.679 | 0.0 | |
| Q39557 | 1121 | Phytochrome 2 OS=Ceratodo | N/A | no | 0.988 | 0.840 | 0.635 | 0.0 | |
| Q01549 | 1134 | Phytochrome 1 OS=Selagine | N/A | no | 0.988 | 0.830 | 0.634 | 0.0 | |
| P36505 | 1132 | Phytochrome 1 OS=Physcomi | N/A | no | 0.967 | 0.814 | 0.639 | 0.0 | |
| P93673 | 1124 | Phytochrome type A OS=Lat | N/A | no | 0.991 | 0.840 | 0.601 | 0.0 | |
| P33530 | 1124 | Phytochrome A1 OS=Nicotia | N/A | no | 0.979 | 0.830 | 0.604 | 0.0 |
| >sp|Q10CQ8|PHYC_ORYSJ Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1 | Back alignment and function desciption |
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Score = 1432 bits (3707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/961 (70%), Positives = 812/961 (84%), Gaps = 14/961 (1%)
Query: 2 SSKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYSTSVNISSSTSNV 59
SS+S N+ SRSSSARSK +ARV AQT +DA+L +F+ S FDYS+SV +++ S
Sbjct: 3 SSRSNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVG-AANRSGA 61
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
+S VSAYLQ +QRGR +QPFGC++AV + F +L YSENA EMLDL PHAVP I+Q++A
Sbjct: 62 TTSNVSAYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREA 121
Query: 120 LTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDL 179
L +G DVRTLF S ALQKAA FG+VNLLNPIL+H +TSGKPFYAI+HRIDVGLVIDL
Sbjct: 122 LAVGTDVRTLFRSHSFVALQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVIDL 181
Query: 180 EPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVY 239
EPVNP D+PVTA GA+KSYKLAA+AI+RLQSLPSGN+SLLCDVLV EVS+LTGYDRVM Y
Sbjct: 182 EPVNPVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAY 241
Query: 240 KFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ 299
KFHEDEHGEV+AEC+R DLEPYLG HYPATDIPQASRFL MKNKVRMICDC A PVK+IQ
Sbjct: 242 KFHEDEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQ 301
Query: 300 DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTIN----EAEDELDNDQEQGR 355
D L QP+S+CGSTLRAPHGCHA+YM +MGS+ASLVMSVTIN + D + Q +GR
Sbjct: 302 DDSLTQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGR 361
Query: 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDM 415
KLWGL+VCHHTSPRFVPFPLRYACEFL+QVFG+Q+NKEVEL+AQ +E+HILRTQT+LCDM
Sbjct: 362 KLWGLMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDM 421
Query: 416 LLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGST 475
LLRD+PVGI TQ+PNVMDLVKCDGAALYY+ +LW+LG TP+E +IK+I WL EYH GST
Sbjct: 422 LLRDAPVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGST 481
Query: 476 GLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDS-GGK 534
GLSTDSLVEAGYPGA ALGD VCG+AA+KI+SKDF+FWFRSHTAKEIKWGGAKH+
Sbjct: 482 GLSTDSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDAD 541
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA---EDSKMIV 591
D GRKMHPRSSFKAFLEVVK RS+PWEDVEMDAIHSLQLILRGSLQDE A ++K IV
Sbjct: 542 DNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIV 601
Query: 592 NVPSVD-DRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQ 650
PS D +I+ + ELR +TNEMVRLIETA PILAVD +G++NGWN+KAAELTGL V +
Sbjct: 602 TAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVME 661
Query: 651 AIGTALVDLVAGDSVDVVKNMLSSAF--LEERNVEIKLRAFGPRETSGPVILVVNACCTQ 708
AIG LVDLV DSV+VVK +L+SA +EE+N++IKL+ F +E +GPVIL+VNACC++
Sbjct: 662 AIGKPLVDLVIDDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSR 721
Query: 709 DTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWN 768
D E V+GVCFV QD+TGQ ++MDKYTRIQGDYV IV +PS LIPPIFM ++ G CLEWN
Sbjct: 722 DLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWN 781
Query: 769 DGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILF 828
+ M+K++G+KRE+A++++LIGEVFT +GCRVK+H TLTKL I+MN VISGQD +K+LF
Sbjct: 782 EAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLF 841
Query: 829 GFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAAANSLNK 888
GFF+ GKY+E+L++A KRT+AEGKI+G LCFLHVASPELQ+ALQVQ++SEQAA NS +
Sbjct: 842 GFFNTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKE 901
Query: 889 LEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDTDIESIEEW 948
L YIR+E+R PLNG+ F +NL+ SDL+EEQ++LL ++VLCQEQL I+ DTD+ESIE+
Sbjct: 902 LTYIRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIEQC 961
Query: 949 Y 949
Y
Sbjct: 962 Y 962
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Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2XM23|PHYC_ORYSI Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2 | Back alignment and function description |
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| >sp|P93528|PHYC_SORBI Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1 | Back alignment and function description |
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| >sp|P14714|PHYC_ARATH Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1 | Back alignment and function description |
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| >sp|Q40762|PHY_PICAB Phytochrome OS=Picea abies PE=2 SV=1 | Back alignment and function description |
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| >sp|Q39557|PHY2_CERPU Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q01549|PHY1_SELMA Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P36505|PHY1_PHYPA Phytochrome 1 OS=Physcomitrella patens subsp. patens GN=PHY1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P93673|PHYA_LATSA Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=3 SV=1 | Back alignment and function description |
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| >sp|P33530|PHYA1_TOBAC Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| 183239026 | 1123 | phytochrome C [Vitis riparia] | 0.995 | 0.845 | 0.813 | 0.0 | |
| 225447543 | 1118 | PREDICTED: phytochrome C [Vitis vinifera | 0.995 | 0.848 | 0.814 | 0.0 | |
| 183239018 | 1118 | phytochrome C [Vitis vinifera] | 0.995 | 0.848 | 0.812 | 0.0 | |
| 449453752 | 1119 | PREDICTED: phytochrome C-like [Cucumis s | 0.994 | 0.847 | 0.747 | 0.0 | |
| 449506938 | 1119 | PREDICTED: LOW QUALITY PROTEIN: phytochr | 0.994 | 0.847 | 0.746 | 0.0 | |
| 6671484 | 1118 | phytochrome F [Solanum lycopersicum] | 0.992 | 0.846 | 0.732 | 0.0 | |
| 7672696 | 1137 | phytochrome C [Oryza sativa Indica Group | 0.993 | 0.832 | 0.704 | 0.0 | |
| 115455391 | 1137 | Os03g0752100 [Oryza sativa Japonica Grou | 0.993 | 0.832 | 0.704 | 0.0 | |
| 158513185 | 1137 | RecName: Full=Phytochrome C | 0.993 | 0.832 | 0.703 | 0.0 | |
| 357115337 | 1140 | PREDICTED: phytochrome C-like [Brachypod | 0.993 | 0.830 | 0.701 | 0.0 |
| >gi|183239026|gb|ACC60971.1| phytochrome C [Vitis riparia] | Back alignment and taxonomy information |
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Score = 1653 bits (4281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/955 (81%), Positives = 874/955 (91%), Gaps = 6/955 (0%)
Query: 1 MSSKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYSTSV--NISSST 56
MSSKSTNKTN SRSSSARSK ARV AQT IDA+L +F+ES+ FDYS S+ NISSST
Sbjct: 1 MSSKSTNKTNCSRSSSARSKHGARVVAQTPIDAQLHVNFEESERHFDYSASIDFNISSST 60
Query: 57 SNVPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQ 116
+VPSSTVSAYLQ++QRG LIQPFGCMIAVDEQN TVL YSENAPEMLDLAPHAVP+IEQ
Sbjct: 61 GDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQ 120
Query: 117 QDALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLV 176
Q+AL +G DVRTLF SSGAAALQKAANFGEVNLLNPIL+HC+ SGKPFYAILHRIDVGL+
Sbjct: 121 QEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHCRNSGKPFYAILHRIDVGLI 180
Query: 177 IDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRV 236
IDLEPVNP DVP+TAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLV E S+LTGYDRV
Sbjct: 181 IDLEPVNPADVPITAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYDRV 240
Query: 237 MVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVK 296
MVYKFHEDEHGEV+AECR+PDLEPYLG HYPATDIPQASRFL MKNKVRMICDCLAPPVK
Sbjct: 241 MVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPVK 300
Query: 297 VIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356
VIQ+K+L QPLSLCGSTLR+PHGCHA+YM NMGS+ASLVMSVTINE +D+ +++Q++GRK
Sbjct: 301 VIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKGRK 360
Query: 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDML 416
LWGLVVCH+TSPRFVPFPLRYACEFL+QVFGVQ++KE+EL+AQ++EKHIL+TQTVLCDML
Sbjct: 361 LWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCDML 420
Query: 417 LRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTG 476
LRD+PVGIVTQ+PNVMDLV+CDGAALYY+ K WLLGVTPTE QI+DI EWLLEYH GSTG
Sbjct: 421 LRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGSTG 480
Query: 477 LSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDG 536
LSTDSL+EAGYP AL LGDAVCGIAAVKI S DFLFWFRSHTAKEIKWGGAKHD KD
Sbjct: 481 LSTDSLMEAGYPAALVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDKDD 540
Query: 537 GRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSV 596
GRKMHPRSSFKAFLEVVK+RSLPWEDVEMDAIHSLQLILRGSLQD+ A+DSKMIVNVPSV
Sbjct: 541 GRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQDKSADDSKMIVNVPSV 600
Query: 597 DDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTAL 656
D I+ D+LRI+TNEMVRLIETA+VPILAVDA+G +NGWN+KAAELTGL + QAIG L
Sbjct: 601 DASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIGMPL 660
Query: 657 VDLVAGDSVDVVKNMLSSAF--LEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENV 714
+DLV DS D+VK MLS A +EE+NVEIKL+ FGP+E +GPVILVVNACC++D K+NV
Sbjct: 661 IDLVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDIKDNV 720
Query: 715 IGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKL 774
+GVCFVGQDITGQK+VMDKYTRIQGDYVGIV +PSALIPPIFM DE GRCLEWND M+ L
Sbjct: 721 VGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDAMQNL 780
Query: 775 SGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQ 834
SGLKREEA +RML+GEVFTV NFGC+VK+HDTLTKLRI++N I+GQDA K+LFGFFDQ
Sbjct: 781 SGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGFFDQH 840
Query: 835 GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYIRR 894
GKY+EALLSANKRT+AEGKI+G+LCFLHVASPELQ+A+QVQRISEQAAA+SL KL YIR+
Sbjct: 841 GKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLAYIRQ 900
Query: 895 EIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDTDIESIEEWY 949
+IRKPLNGI F+QNLM +S+LS++QK+ L+TS++CQEQLT IVDDTD+ESIEE Y
Sbjct: 901 QIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECY 955
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Source: Vitis riparia Species: Vitis riparia Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447543|ref|XP_002268724.1| PREDICTED: phytochrome C [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|183239018|gb|ACC60967.1| phytochrome C [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449453752|ref|XP_004144620.1| PREDICTED: phytochrome C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449506938|ref|XP_004162889.1| PREDICTED: LOW QUALITY PROTEIN: phytochrome C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|6671484|gb|AAC49301.2| phytochrome F [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|7672696|gb|AAF66603.1|AF141942_1 phytochrome C [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|115455391|ref|NP_001051296.1| Os03g0752100 [Oryza sativa Japonica Group] gi|122246759|sp|Q10CQ8.1|PHYC_ORYSJ RecName: Full=Phytochrome C gi|21070927|gb|AAM34402.1|AF377947_8 phytochrome C [Oryza sativa Japonica Group] gi|4190974|dbj|BAA74448.1| phytochrome C [Oryza sativa Japonica Group] gi|31712054|gb|AAP68360.1| phytochrome C [Oryza sativa Japonica Group] gi|40538982|gb|AAR87239.1| phytochrome C [Oryza sativa Japonica Group] gi|108711120|gb|ABF98915.1| Phytochrome C, putative, expressed [Oryza sativa Japonica Group] gi|113549767|dbj|BAF13210.1| Os03g0752100 [Oryza sativa Japonica Group] gi|125587941|gb|EAZ28605.1| hypothetical protein OsJ_12592 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|158513185|sp|A2XM23.2|PHYC_ORYSI RecName: Full=Phytochrome C | Back alignment and taxonomy information |
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| >gi|357115337|ref|XP_003559446.1| PREDICTED: phytochrome C-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| TAIR|locus:2165199 | 1111 | PHYC "phytochrome C" [Arabidop | 0.985 | 0.845 | 0.647 | 0.0 | |
| TAIR|locus:2012300 | 1122 | PHYA "phytochrome A" [Arabidop | 0.989 | 0.840 | 0.588 | 2e-308 | |
| TAIR|locus:2005515 | 1172 | PHYB "AT2G18790" [Arabidopsis | 0.977 | 0.795 | 0.583 | 1.3e-292 | |
| UNIPROTKB|P06593 | 1129 | PHYA3 "Phytochrome A type 3" [ | 0.984 | 0.830 | 0.564 | 1.9e-289 | |
| TAIR|locus:2005535 | 1164 | PHYD "phytochrome D" [Arabidop | 0.985 | 0.806 | 0.556 | 9.3e-281 | |
| TAIR|locus:2005536 | 1112 | PHYE "phytochrome E" [Arabidop | 0.959 | 0.821 | 0.523 | 2.2e-256 | |
| UNIPROTKB|Q55168 | 748 | cph1 "Phytochrome-like protein | 0.611 | 0.779 | 0.297 | 7.4e-66 | |
| UNIPROTKB|Q48G81 | 745 | bphP "Bacteriophytochrome hist | 0.417 | 0.534 | 0.296 | 2.4e-42 | |
| UNIPROTKB|Q4K656 | 746 | bphP "Bacteriophytochrome hist | 0.484 | 0.619 | 0.274 | 1.9e-40 | |
| UNIPROTKB|Q7CY45 | 736 | Atu1990 "Bacteriophytochrome p | 0.428 | 0.554 | 0.298 | 6.5e-39 |
| TAIR|locus:2165199 PHYC "phytochrome C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3314 (1171.6 bits), Expect = 0., P = 0.
Identities = 618/954 (64%), Positives = 780/954 (81%)
Query: 9 TNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYXXXXXXXXXXXXXX--XXXX 64
+N SRS S RS+QN+RV++Q +DAKL +F+ES+ FDY
Sbjct: 3 SNTSRSCSTRSRQNSRVSSQVLVDAKLHGNFEESERLFDYSASINLNMPSSSCEIPSSAV 62
Query: 65 XAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGI 124
YLQ++QRG LIQPFGC+I VDE+N V+ +SEN EML L PH VP++EQ++ALT+G
Sbjct: 63 STYLQKIQRGMLIQPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGT 122
Query: 125 DVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNP 184
DV++LF S G +AL+KA +FGE+++LNPI +HC++S KPFYAILHRI+ GLVIDLEPV+P
Sbjct: 123 DVKSLFLSPGCSALEKAVDFGEISILNPITLHCRSSSKPFYAILHRIEEGLVIDLEPVSP 182
Query: 185 DDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHED 244
D+VPVTAAGAL+SYKLAAK+ISRLQ+LPSGN+ LLCD LV EVS+LTGYDRVMVYKFHED
Sbjct: 183 DEVPVTAAGALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHED 242
Query: 245 EHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLD 304
HGEV+AEC R D+EPYLG HY ATDIPQASRFL M+NKVRMICDC A PVKV+QDK L
Sbjct: 243 GHGEVIAECCREDMEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLS 302
Query: 305 QPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAE-DELDNDQEQGRKLWGLVVC 363
QP+SL GSTLRAPHGCHA+YM NMGS+ASLVMSVTIN ++ DE++ D + GR LWGLVVC
Sbjct: 303 QPISLSGSTLRAPHGCHAQYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVC 362
Query: 364 HHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVG 423
HH SPRFVPFPLRYACEFL QVFGVQ+NKE E + L+EK IL+TQ+VLCDML R++P+G
Sbjct: 363 HHASPRFVPFPLRYACEFLTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIG 422
Query: 424 IVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLV 483
IVTQ+PN+MDLVKCDGAALYYR LW LGVTPTE QI+D+ +W+L+ H G+TG +T+SL+
Sbjct: 423 IVTQSPNIMDLVKCDGAALYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLM 482
Query: 484 EAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPR 543
E+GYP A LG+++CG+AAV I+ KDFLFWFRS TAK+IKWGGA+HD +DG ++MHPR
Sbjct: 483 ESGYPDASVLGESICGMAAVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRDG-KRMHPR 541
Query: 544 SSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKI 603
SSFKAF+E+V+ +S+PW+D+EMDAI+SLQLI++GSLQ+E SK +V+VP VD+R++K+
Sbjct: 542 SSFKAFMEIVRWKSVPWDDMEMDAINSLQLIIKGSLQEE---HSKTVVDVPLVDNRVQKV 598
Query: 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663
DEL +I NEMVRLI+TAAVPI AVDASG +NGWNSKAAE+TGL V+QAIG + DLV D
Sbjct: 599 DELCVIVNEMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSDLVEDD 658
Query: 664 SVDVVKNMLSSAF--LEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVG 721
SV+ VKNML+ A EER EI++RAFGP+ S PV LVVN CC++D NV+GVCF+G
Sbjct: 659 SVETVKNMLALALEGSEERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIG 718
Query: 722 QDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREE 781
QD+TGQK + + Y+R++GDY I+ SPS LIPPIF+T+E+G C EWN+ M+KLSG+KREE
Sbjct: 719 QDVTGQKTLTENYSRVKGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREE 778
Query: 782 AIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ-DADKILFGFFDQQGKYVEA 840
+ ++L+GEVFT ++GC +K+HDTLTKLRI N VISGQ + +K+LFGF+ + G ++EA
Sbjct: 779 VVNKILLGEVFTTDDYGCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEA 838
Query: 841 LLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYIRREIRKPL 900
LLSANKRT+ EGK++G+LCFL V SPELQYALQVQ+ISE A A +LNKL Y+R E++ P
Sbjct: 839 LLSANKRTDIEGKVTGVLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPE 898
Query: 901 NGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDDTDIESIEEWY---DC 951
I+F+Q+L+ +S LSE+QK+LL+TSVLC+EQL ++ D+DIE IEE Y DC
Sbjct: 899 KAISFLQDLLHSSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDC 952
|
|
| TAIR|locus:2012300 PHYA "phytochrome A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2005515 PHYB "AT2G18790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P06593 PHYA3 "Phytochrome A type 3" [Avena sativa (taxid:4498)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2005535 PHYD "phytochrome D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2005536 PHYE "phytochrome E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q55168 cph1 "Phytochrome-like protein cph1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q48G81 bphP "Bacteriophytochrome histidine kinase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4K656 bphP "Bacteriophytochrome histidine kinase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7CY45 Atu1990 "Bacteriophytochrome protein" [Agrobacterium fabrum str. C58 (taxid:176299)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P30733 | PHYA_SOLTU | No assigned EC number | 0.5991 | 0.9758 | 0.8281 | N/A | no |
| A2XLG5 | PHYA_ORYSI | No assigned EC number | 0.5717 | 0.9727 | 0.8218 | N/A | no |
| P42496 | PHY_ADICA | No assigned EC number | 0.5980 | 0.9632 | 0.8211 | N/A | no |
| P36505 | PHY1_PHYPA | No assigned EC number | 0.6390 | 0.9674 | 0.8144 | N/A | no |
| P55141 | PHYA_PETCR | No assigned EC number | 0.5718 | 0.9769 | 0.8246 | N/A | no |
| Q40762 | PHY_PICAB | No assigned EC number | 0.6796 | 0.9758 | 0.8186 | N/A | no |
| Q41046 | PHY_PINSY | No assigned EC number | 0.6098 | 0.9674 | 0.8152 | N/A | no |
| P33529 | PHY_MOUSC | No assigned EC number | 0.5787 | 0.9632 | 0.8167 | N/A | no |
| A2XM23 | PHYC_ORYSI | No assigned EC number | 0.7034 | 0.9937 | 0.8328 | N/A | no |
| P15001 | PHYA_PEA | No assigned EC number | 0.5960 | 0.9916 | 0.8407 | N/A | no |
| P14714 | PHYC_ARATH | No assigned EC number | 0.6582 | 0.9853 | 0.8451 | yes | no |
| Q10CQ8 | PHYC_ORYSJ | No assigned EC number | 0.7044 | 0.9937 | 0.8328 | yes | no |
| P29130 | PHYB_TOBAC | No assigned EC number | 0.5960 | 0.9779 | 0.8233 | N/A | no |
| P34094 | PHYB_SOLTU | No assigned EC number | 0.5978 | 0.9758 | 0.8230 | N/A | no |
| P06592 | PHYA_CUCPE | No assigned EC number | 0.5974 | 0.9674 | 0.8202 | N/A | no |
| P93528 | PHYC_SORBI | No assigned EC number | 0.7044 | 0.9947 | 0.8352 | N/A | no |
| P06593 | PHYA3_AVESA | No assigned EC number | 0.5705 | 0.9748 | 0.8228 | N/A | no |
| P06594 | PHYA4_AVESA | No assigned EC number | 0.5727 | 0.9727 | 0.8210 | N/A | no |
| O49934 | PHYA_POPTM | No assigned EC number | 0.6031 | 0.9727 | 0.824 | N/A | no |
| P55004 | PHYE_IPONI | No assigned EC number | 0.5589 | 0.9548 | 0.8161 | N/A | no |
| P93526 | PHYA_SORBI | No assigned EC number | 0.5694 | 0.9748 | 0.8213 | N/A | no |
| P33530 | PHYA1_TOBAC | No assigned EC number | 0.6046 | 0.9790 | 0.8300 | N/A | no |
| Q01549 | PHY1_SELMA | No assigned EC number | 0.6347 | 0.9884 | 0.8306 | N/A | no |
| P93673 | PHYA_LATSA | No assigned EC number | 0.6012 | 0.9916 | 0.8407 | N/A | no |
| P19862 | PHYA1_MAIZE | No assigned EC number | 0.5706 | 0.9727 | 0.8196 | N/A | no |
| Q9ZS62 | PHYB1_SOLLC | No assigned EC number | 0.5838 | 0.9874 | 0.8320 | N/A | no |
| Q39557 | PHY2_CERPU | No assigned EC number | 0.6358 | 0.9884 | 0.8403 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 953 | |||
| COG4251 | 750 | COG4251, COG4251, Bacteriophytochrome (light-regul | 1e-100 | |
| pfam00360 | 183 | pfam00360, PHY, Phytochrome region | 4e-94 | |
| pfam08446 | 107 | pfam08446, PAS_2, PAS fold | 3e-50 | |
| pfam00989 | 113 | pfam00989, PAS, PAS fold | 2e-19 | |
| pfam01590 | 143 | pfam01590, GAF, GAF domain | 2e-18 | |
| pfam00989 | 113 | pfam00989, PAS, PAS fold | 3e-17 | |
| smart00065 | 149 | smart00065, GAF, Domain present in phytochromes an | 9e-14 | |
| cd00130 | 103 | cd00130, PAS, PAS domain; PAS motifs appear in arc | 1e-07 | |
| TIGR00229 | 124 | TIGR00229, sensory_box, PAS domain S-box | 4e-07 | |
| cd00130 | 103 | cd00130, PAS, PAS domain; PAS motifs appear in arc | 6e-07 | |
| pfam13426 | 101 | pfam13426, PAS_9, PAS domain | 6e-07 | |
| pfam00512 | 66 | pfam00512, HisKA, His Kinase A (phospho-acceptor) | 6e-07 | |
| smart00091 | 67 | smart00091, PAS, PAS domain | 9e-07 | |
| smart00388 | 66 | smart00388, HisKA, His Kinase A (phosphoacceptor) | 1e-06 | |
| PRK11360 | 607 | PRK11360, PRK11360, sensory histidine kinase AtoS; | 4e-06 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 6e-06 | |
| TIGR00229 | 124 | TIGR00229, sensory_box, PAS domain S-box | 7e-05 | |
| smart00091 | 67 | smart00091, PAS, PAS domain | 7e-05 | |
| pfam13426 | 101 | pfam13426, PAS_9, PAS domain | 1e-04 | |
| COG3829 | 560 | COG3829, RocR, Transcriptional regulator containin | 1e-04 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 4e-04 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 7e-04 | |
| cd00082 | 65 | cd00082, HisKA, Histidine Kinase A (dimerization/p | 0.001 |
| >gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-100
Identities = 176/514 (34%), Positives = 259/514 (50%), Gaps = 49/514 (9%)
Query: 76 LIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGA 135
IQP G ++ +DE + VL SEN +L P E TLG + TS
Sbjct: 25 AIQPHGALLVLDEADLMVLQASENCANILGREP------EDLLGRTLG----AVLTSEQV 74
Query: 136 AALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGAL 195
LQ A G + LNP + + G F HR L+++ EP + A L
Sbjct: 75 PPLQSALTVGGLTTLNPTKMWTR-KGGSFDVSAHRSKELLILEFEPAGTGE----TASFL 129
Query: 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRR 255
Y LA A++RLQS N+ L EV +TG+DRVM+Y+F ED GEV+AE +R
Sbjct: 130 GFYHLAKLAMNRLQSAA--NLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAKR 187
Query: 256 PDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQPLSLCGST 313
DLE YLG YPA+DIPQ +R L ++N +R+I D PV V+ + + ++PL L S
Sbjct: 188 EDLESYLGLRYPASDIPQQARALYIQNPLRLIPDVSYTPVPVLPAVNPETNEPLDLSYSV 247
Query: 314 LRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPF 373
LR+ H Y+ NMG AS+ +S+ ++ KLWGL+ CHH SP+ +P+
Sbjct: 248 LRSVSPIHLEYLRNMGVGASMSISIVVDG-------------KLWGLIACHHQSPKVIPY 294
Query: 374 PLRYACEFLIQVFGVQVNKE-----VELSAQLREKHILRTQTVLCDMLLRDSPV-GIVTQ 427
+R ACEF QV ++++ + QL E H +L M V G++
Sbjct: 295 EVRKACEFFGQVLSMEISALEQSEDADYRVQLTEHHAR----LLRYMAHAADFVDGLIDH 350
Query: 428 TPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGY 487
+++DL+ DGAAL + G+ L+G TP ++ + +WL E G +TDSL + Y
Sbjct: 351 QDDLLDLMPADGAALCFGGRWHLVGETPPRPAVQRLLQWLAEREEGDV-FATDSLSQV-Y 408
Query: 488 PGALALGDAVCGIAAVKIT--SKDFLFWFRSHTAKEIKWGG--AKHDSGGKDGGRKMHPR 543
P A G+ A+ I+ ++L WFR + + WGG K G G R + PR
Sbjct: 409 PDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIR-LTPR 467
Query: 544 SSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRG 577
SF+ + E V+ +S PW +VE++A L+ + G
Sbjct: 468 KSFELWKETVRLQSQPWSEVEIEAALELRKAIVG 501
|
Length = 750 |
| >gnl|CDD|215877 pfam00360, PHY, Phytochrome region | Back alignment and domain information |
|---|
| >gnl|CDD|203947 pfam08446, PAS_2, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|216228 pfam00989, PAS, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|216590 pfam01590, GAF, GAF domain | Back alignment and domain information |
|---|
| >gnl|CDD|216228 pfam00989, PAS, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box | Back alignment and domain information |
|---|
| >gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >gnl|CDD|222120 pfam13426, PAS_9, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain | Back alignment and domain information |
|---|
| >gnl|CDD|214512 smart00091, PAS, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box | Back alignment and domain information |
|---|
| >gnl|CDD|214512 smart00091, PAS, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|222120 pfam13426, PAS_9, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|226350 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 100.0 | |
| PF00360 | 182 | PHY: Phytochrome region; InterPro: IPR013515 Phyto | 99.97 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.97 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.94 | |
| PF08446 | 110 | PAS_2: PAS fold; InterPro: IPR013654 The PAS fold | 99.9 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.9 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.89 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.88 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 99.87 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.85 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 99.8 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 99.77 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.68 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 99.67 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.66 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 99.61 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.61 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.59 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.57 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 99.43 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.43 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 99.4 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 99.39 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 99.38 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 99.37 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 99.35 | |
| PF01590 | 154 | GAF: GAF domain; InterPro: IPR003018 This domain i | 99.33 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 99.31 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 99.29 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.25 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.23 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.22 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 99.19 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 99.11 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.06 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.04 | |
| smart00065 | 149 | GAF Domain present in phytochromes and cGMP-specif | 99.01 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.0 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 98.99 | |
| PRK13557 | 540 | histidine kinase; Provisional | 98.98 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 98.96 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 98.92 | |
| TIGR00229 | 124 | sensory_box PAS domain S-box. The PAS domain was p | 98.9 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 98.88 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 98.88 | |
| TIGR00229 | 124 | sensory_box PAS domain S-box. The PAS domain was p | 98.85 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 98.82 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 98.79 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 98.77 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 98.77 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 98.58 | |
| COG2203 | 175 | FhlA FOG: GAF domain [Signal transduction mechanis | 98.57 | |
| PF13492 | 129 | GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ | 98.53 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 98.51 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 98.5 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.46 | |
| cd00130 | 103 | PAS PAS domain; PAS motifs appear in archaea, euba | 98.44 | |
| PF12860 | 115 | PAS_7: PAS fold | 98.43 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 98.43 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 98.41 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 98.4 | |
| cd00130 | 103 | PAS PAS domain; PAS motifs appear in archaea, euba | 98.39 | |
| COG2202 | 232 | AtoS FOG: PAS/PAC domain [Signal transduction mech | 98.38 | |
| PF13185 | 148 | GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ | 98.31 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.31 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 98.29 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 98.27 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 98.26 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 98.26 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 98.2 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.12 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.12 | |
| PF12860 | 115 | PAS_7: PAS fold | 98.12 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.11 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 98.07 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 98.05 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 98.01 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.99 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 97.99 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 97.89 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 97.88 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 97.88 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 97.87 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 97.8 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.69 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.68 | |
| PRK11061 | 748 | fused phosphoenolpyruvate-protein phosphotransfera | 97.68 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 97.67 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 97.64 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 97.58 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 97.52 | |
| KOG3560 | 712 | consensus Aryl-hydrocarbon receptor [Transcription | 97.49 | |
| PF13188 | 64 | PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. | 97.47 | |
| COG2202 | 232 | AtoS FOG: PAS/PAC domain [Signal transduction mech | 97.43 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 97.41 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 97.41 | |
| KOG3559 | 598 | consensus Transcriptional regulator SIM1 [Transcri | 97.4 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 97.28 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 97.27 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 96.98 | |
| PF13188 | 64 | PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. | 96.96 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 96.89 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 96.85 | |
| smart00091 | 67 | PAS PAS domain. PAS motifs appear in archaea, euba | 96.58 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.49 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.49 | |
| KOG1229 | 775 | consensus 3'5'-cyclic nucleotide phosphodiesterase | 96.46 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.3 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 96.08 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 95.97 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 95.85 | |
| PF08670 | 148 | MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK | 95.48 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.48 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.45 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 95.4 | |
| PF08670 | 148 | MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK | 95.33 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 95.29 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.26 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 95.15 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 95.11 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 95.1 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.01 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 94.82 | |
| TIGR02373 | 124 | photo_yellow photoactive yellow protein. Members o | 94.64 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 94.51 | |
| TIGR02373 | 124 | photo_yellow photoactive yellow protein. Members o | 94.44 | |
| smart00086 | 43 | PAC Motif C-terminal to PAS motifs (likely to cont | 94.37 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 94.23 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 94.23 | |
| TIGR02851 | 180 | spore_V_T stage V sporulation protein T. Members o | 93.96 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 93.73 | |
| smart00091 | 67 | PAS PAS domain. PAS motifs appear in archaea, euba | 93.42 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 93.15 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 92.77 | |
| KOG1229 | 775 | consensus 3'5'-cyclic nucleotide phosphodiesterase | 92.3 | |
| KOG3753 | 1114 | consensus Circadian clock protein period [Signal t | 91.91 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 91.86 | |
| KOG3561 | 803 | consensus Aryl-hydrocarbon receptor nuclear transl | 88.72 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 88.59 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 87.77 | |
| smart00086 | 43 | PAC Motif C-terminal to PAS motifs (likely to cont | 86.88 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 86.15 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 85.27 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 84.69 | |
| COG3887 | 655 | Predicted signaling protein consisting of a modifi | 82.18 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 81.98 | |
| PF08446 | 110 | PAS_2: PAS fold; InterPro: IPR013654 The PAS fold | 80.86 | |
| COG3605 | 756 | PtsP Signal transduction protein containing GAF an | 80.39 |
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-120 Score=996.25 Aligned_cols=480 Identities=34% Similarity=0.618 Sum_probs=428.6
Q ss_pred hhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccCCC
Q 002210 68 LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFGEV 147 (953)
Q Consensus 68 ~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (953)
-+|||+||+||||||||++|+.++.|+|+|+||..+||+.|++ ++|+++.++|+..+...++.++..+..
T Consensus 17 ~ePIHipG~IQPHG~Llvl~~~~~~Vlq~S~N~~~~LG~~~e~----------l~~~tl~~vl~~~qv~~l~~~l~~~~~ 86 (750)
T COG4251 17 REPIHIPGAIQPHGALLVLDEADLMVLQASENCANILGREPED----------LLGRTLGAVLTSEQVPPLQSALTVGGL 86 (750)
T ss_pred cCCccCCCccCCceeEEEeecCCchhhhhhhhHHHHhCCChhh----------hhcCCHHHhcchhhccHHHHhccccCc
Confidence 4799999999999999999999999999999999999999875 689999999999999999999999888
Q ss_pred CCCCceEEeecCCCceEEEEEEeeCCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002210 148 NLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEV 227 (953)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~v 227 (953)
...||..+..+. +..|++++||+++.+|+||||+...+.. ..+.+++++..++.+||+. .++.++|+.++++|
T Consensus 87 ~~~np~~~w~~~-~~~fDv~~HR~~~llIlEfEp~~t~e~~----~~l~f~h~~k~a~~~lq~a--~~l~~l~~~~tqeV 159 (750)
T COG4251 87 TTLNPTKMWTRK-GGSFDVSAHRSKELLILEFEPAGTGETA----SFLGFYHLAKLAMNRLQSA--ANLRDLLSRTTQEV 159 (750)
T ss_pred ccCCchhhhhhc-CCceeEEEEecCcEEEEEEecCcccccc----cccchHHHHHHHHHHHhcC--ccHHHHHHHHHHHH
Confidence 888885443232 3389999999999999999997544321 2345678888899999994 49999999999999
Q ss_pred HhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeee--CCCCCC
Q 002210 228 SDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQ 305 (953)
Q Consensus 228 r~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~--~~~~~~ 305 (953)
|++|||||||+|||++||+|+||||+++++++||||+||||||||+|||+||.+|++|+|+|+.|.||||.| +|.++.
T Consensus 160 r~~tGfDRVMlYrF~~d~~G~VIAEak~e~LesyLGl~yPaSDIP~qAR~LY~~N~lRlIpD~~~~~vpv~PavNp~t~~ 239 (750)
T COG4251 160 RRMTGFDRVMLYRFDEDGSGEVIAEAKREDLESYLGLRYPASDIPQQARALYIQNPLRLIPDVSYTPVPVLPAVNPETNE 239 (750)
T ss_pred HHhcCCceEEEEeecCCCCccEEeccccccchhhhcccCCcccCCHHHHHHHhcCceeecccccCcccccccccCcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 688999
Q ss_pred ccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHHHHHHH
Q 002210 306 PLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQV 385 (953)
Q Consensus 306 ~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~ 385 (953)
|+|||+|.|||+||||+|||+||||.||||||||++ |||||||+|||.|||++|+++|.+|||++|+
T Consensus 240 p~DLs~svLRSvSp~H~eYLrNMGV~ASmSISivv~-------------g~LWGLIACHH~sPk~ip~~vR~acef~gq~ 306 (750)
T COG4251 240 PLDLSYSVLRSVSPIHLEYLRNMGVGASMSISIVVD-------------GKLWGLIACHHQSPKVIPYEVRKACEFFGQV 306 (750)
T ss_pred cccchHHHHhccChHHHHHHHhcCcceeeEEEEEEC-------------CeeEEeeeeccCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCC-CccccCCcchhhhccCCeEEEEECCeEEEeCCCCCHHHHHHH
Q 002210 386 FGVQVNKEVELSAQLREKHIL-RTQTVLCDMLLRDSP-VGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDI 463 (953)
Q Consensus 386 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~dg~a~~~~~~~~~~G~~p~~~~~~~l 463 (953)
+|++|+...+.+......... ....++..|...+++ .+++...+++++|++|||++++++|+|.++|.||+..++..|
T Consensus 307 ~s~~i~~~e~~~~~d~r~~l~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~~~~vG~tP~~~~v~~L 386 (750)
T COG4251 307 LSMEISALEQSEDADYRVQLTEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGRWHLVGETPPRPAVQRL 386 (750)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCEEEEecCCCChHHHHHH
Confidence 999997654322211111111 222344455555554 678888999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEecccCcCCCCCccccccccceEEEEEeCC--CCEEEEeccCcccEEeccCCCCCCCC-CCCCccc
Q 002210 464 AEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHDSGG-KDGGRKM 540 (953)
Q Consensus 464 ~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~~~~~i~~--~~~l~wfR~e~~~~v~WaG~p~~~~~-~~dg~~l 540 (953)
+.||.+... ..+|.||+|+.. ||.++.|++.+|||+|++|+. ++|++|||+|..++|+|||+|+|++. +++|.|+
T Consensus 387 l~wl~~~~~-~~vf~TdsL~q~-yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~~~~rL 464 (750)
T COG4251 387 LQWLAEREE-GDVFATDSLSQV-YPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRL 464 (750)
T ss_pred HHHHhcCCc-ccEEeecccccc-CcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCCCCccc
Confidence 999988744 479999999985 999999999999999999997 89999999999999999999999987 4567899
Q ss_pred cccccccceeeeeeccccCchhhHHHHHHHHHHHHHHHh
Q 002210 541 HPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSL 579 (953)
Q Consensus 541 ~PR~SF~~w~e~v~g~s~pW~~~ei~aa~~L~~il~~~~ 579 (953)
+||+||+.|+|+|++++.||...|++++.+++..+.+..
T Consensus 465 ~PRkSFe~WkE~vRl~s~PWs~~ei~~A~~LR~aiv~iv 503 (750)
T COG4251 465 TPRKSFELWKETVRLQSQPWSEVEIEAALELRKAIVGIV 503 (750)
T ss_pred CCcccHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987655543
|
|
| >PF00360 PHY: Phytochrome region; InterPro: IPR013515 Phytochrome belongs to a family of plant photoreceptors that mediate physiological and developmental responses to changes in red and far-red light conditions [] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
| >PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
| >TIGR00229 sensory_box PAS domain S-box | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
| >TIGR00229 sensory_box PAS domain S-box | Back alignment and domain information |
|---|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
| >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >PF12860 PAS_7: PAS fold | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A | Back alignment and domain information |
|---|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PF12860 PAS_7: PAS fold | Back alignment and domain information |
|---|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] | Back alignment and domain information |
|---|
| >PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A | Back alignment and domain information |
|---|
| >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3559 consensus Transcriptional regulator SIM1 [Transcription] | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
| >PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >smart00091 PAS PAS domain | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
| >PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >TIGR02373 photo_yellow photoactive yellow protein | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02373 photo_yellow photoactive yellow protein | Back alignment and domain information |
|---|
| >smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >TIGR02851 spore_V_T stage V sporulation protein T | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >smart00091 PAS PAS domain | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] | Back alignment and domain information |
|---|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
| >smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
| >PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 953 | ||||
| 2vea_A | 520 | The Complete Sensory Module Of The Cyanobacterial P | 7e-71 | ||
| 3zq5_A | 520 | Structure Of The Y263f Mutant Of The Cyanobacterial | 2e-70 | ||
| 4gw9_A | 655 | Structure Of A Bacteriophytochrome And Light-Stimul | 5e-51 | ||
| 3g6o_A | 505 | Crystal Structure Of P. Aeruginosa Bacteriophytochr | 3e-45 | ||
| 3c2w_A | 505 | Crystal Structure Of The Photosensory Core Domain O | 6e-45 | ||
| 3ibr_A | 505 | Crystal Structure Of P. Aeruginosa Bacteriophytochr | 7e-43 | ||
| 2ool_A | 337 | Crystal Structure Of The Chromophore-Binding Domain | 2e-37 | ||
| 4e04_A | 327 | Rpbphp2 Chromophore-binding Domain Crystallized By | 5e-34 | ||
| 2o9b_A | 342 | Crystal Structure Of Bacteriophytochrome Chromophor | 1e-27 | ||
| 3s7q_A | 343 | Crystal Structure Of A Monomeric Infrared Fluoresce | 5e-27 | ||
| 3s7n_A | 343 | Crystal Structure Of The Alternate His 207 Conforma | 7e-27 | ||
| 1ztu_A | 341 | Structure Of The Chromophore Binding Domain Of Bact | 1e-26 | ||
| 2lb5_A | 208 | Refined Structural Basis For The Photoconversion Of | 2e-17 | ||
| 2k2n_A | 172 | Solution Structure Of A Cyanobacterial Phytochrome | 2e-17 |
| >pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial Phytochrome Cph1 In The Pr-State Length = 520 | Back alignment and structure |
|
| >pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial Phytochrome Cph1 Length = 520 | Back alignment and structure |
| >pdb|4GW9|A Chain A, Structure Of A Bacteriophytochrome And Light-Stimulated Protomer Swapping With A Gene Repressor Length = 655 | Back alignment and structure |
| >pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome Pabphp Photosensory Core Domain Mutant Q188l Length = 505 | Back alignment and structure |
| >pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P. Aeruginosa Bacteriophytochrome Pabphp In The Pfr State Length = 505 | Back alignment and structure |
| >pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome Photosensory Core Module Mutant Q188l In The Mixed PrPFR STATE Length = 505 | Back alignment and structure |
| >pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of An Unusual Bacteriophytochrome Rpbphp3 From R. Palustris Length = 337 | Back alignment and structure |
| >pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By Homologue-directed Mutagenesis. Length = 327 | Back alignment and structure |
| >pdb|2O9B|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore Binding Domain Length = 342 | Back alignment and structure |
| >pdb|3S7Q|A Chain A, Crystal Structure Of A Monomeric Infrared Fluorescent Deinococcus Radiodurans Bacteriophytochrome Chromophore Binding Domain Length = 343 | Back alignment and structure |
| >pdb|3S7N|A Chain A, Crystal Structure Of The Alternate His 207 Conformation Of The Infrared Fluorescent D207h Variant Of Deinococcus Bacteriophytochrome Chromophore Binding Domain At 2.45 Angstrom Resolution Length = 343 | Back alignment and structure |
| >pdb|1ZTU|A Chain A, Structure Of The Chromophore Binding Domain Of Bacterial Phytochrome Length = 341 | Back alignment and structure |
| >pdb|2LB5|A Chain A, Refined Structural Basis For The Photoconversion Of A Phytochrome To The Activated Far-Red Light-Absorbing Form Length = 208 | Back alignment and structure |
| >pdb|2K2N|A Chain A, Solution Structure Of A Cyanobacterial Phytochrome Gaf Domain In The Red Light-Absorbing Ground State Length = 172 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Length = 520 | Back alignment and structure |
|---|
| >3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3g6o_A* 3ibr_A* Length = 505 | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Length = 337 | Back alignment and structure |
|---|
| >4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Length = 327 | Back alignment and structure |
|---|
| >3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Length = 343 | Back alignment and structure |
|---|
| >2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Length = 172 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} Length = 152 | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} Length = 125 | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} Length = 125 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Length = 190 | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* Length = 96 | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* Length = 96 | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} Length = 129 | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} Length = 117 | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} Length = 126 | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} Length = 126 | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Length = 114 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 100.0 | |
| 3zq5_A | 520 | Phytochrome-like protein CPH1; arginine finger, ta | 100.0 | |
| 3nhq_A | 505 | Bacteriophytochrome; photoreceptor, PAS, signaling | 100.0 | |
| 3s7o_A | 343 | Bacteriophytochrome; biliverdin, PAS, GAF, photore | 100.0 | |
| 4e04_A | 327 | Bacteriophytochrome (light-regulated signal trans | 100.0 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 100.0 | |
| 4glq_A | 171 | Methyl-accepting chemotaxis protein; chromophore, | 100.0 | |
| 2k2n_A | 172 | Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do | 99.95 | |
| 2lb5_A | 208 | Sensor histidine kinase; PCB, transferase, GAF dom | 99.95 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.94 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 99.78 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 99.77 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 99.67 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 99.67 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 99.64 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 99.62 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 99.59 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 99.57 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 99.57 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 99.56 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 99.55 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 99.55 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 99.54 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 99.54 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 99.53 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 99.53 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 99.53 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 99.51 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 99.5 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 99.5 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 99.48 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 99.47 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 99.47 | |
| 3kx0_X | 185 | Uncharacterized protein RV1364C/MT1410; PAS domain | 99.47 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 99.46 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 99.45 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 99.45 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 99.45 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 99.44 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 99.43 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 99.43 | |
| 3sw1_A | 162 | Sensory box protein; light-oxygen-voltage, LOV, PA | 99.42 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 99.41 | |
| 3sw1_A | 162 | Sensory box protein; light-oxygen-voltage, LOV, PA | 99.4 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 99.4 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 99.4 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 99.39 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 99.39 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 99.37 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 99.37 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 99.37 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.37 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 99.37 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 99.36 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 99.36 | |
| 2z6d_A | 130 | Phototropin-2; PAS-fold, LOV-fold, alternative spl | 99.36 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 99.36 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 99.36 | |
| 2v0u_A | 146 | NPH1-1, LOV2; kinase, transferase, ATP-binding, se | 99.35 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 99.35 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 99.35 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 99.35 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 99.35 | |
| 2z6d_A | 130 | Phototropin-2; PAS-fold, LOV-fold, alternative spl | 99.34 | |
| 2v0u_A | 146 | NPH1-1, LOV2; kinase, transferase, ATP-binding, se | 99.34 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 99.34 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 99.34 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 99.33 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 99.31 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 99.29 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 99.29 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 99.29 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 99.28 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.27 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.24 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 99.24 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 99.22 | |
| 3vol_A | 233 | Aerotaxis transducer AER2; heme, oxygen sensor pro | 99.22 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 99.21 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 99.21 | |
| 3kx0_X | 185 | Uncharacterized protein RV1364C/MT1410; PAS domain | 99.2 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 99.2 | |
| 3vol_A | 233 | Aerotaxis transducer AER2; heme, oxygen sensor pro | 99.2 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 99.19 | |
| 3p01_A | 184 | Two-component response regulator; PSI-2, midwest c | 99.19 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 99.17 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 99.14 | |
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 99.13 | |
| 1byw_A | 110 | Protein (human ERG potassium channel); PAS domain, | 99.07 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 99.07 | |
| 2l0w_A | 138 | Potassium voltage-gated channel, subfamily H (EAG | 99.06 | |
| 2l0w_A | 138 | Potassium voltage-gated channel, subfamily H (EAG | 99.06 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 99.04 | |
| 2zmf_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho | 99.04 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 99.02 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 99.0 | |
| 1byw_A | 110 | Protein (human ERG potassium channel); PAS domain, | 98.99 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 98.98 | |
| 3oov_A | 169 | Methyl-accepting chemotaxis protein, putative; str | 98.97 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 98.97 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 98.95 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 98.92 | |
| 3k2n_A | 177 | Sigma-54-dependent transcriptional regulator; PSI- | 98.92 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 98.92 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 98.9 | |
| 3trc_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; si | 98.9 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 98.9 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 98.89 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 98.88 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 98.88 | |
| 3e0y_A | 181 | Conserved domain protein; APC87688.2, geobacter su | 98.87 | |
| 3ci6_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; PE | 98.87 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 98.86 | |
| 2qyb_A | 181 | Membrane protein, putative; GAF domain, domain of | 98.84 | |
| 2e4s_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 98.84 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 98.33 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 98.83 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 98.83 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 98.82 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 98.81 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 98.79 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 98.75 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 98.75 | |
| 3hcy_A | 151 | Putative two-component sensor histidine kinase PR; | 98.74 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 98.71 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.71 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 98.66 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 98.65 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 98.64 | |
| 3o5y_A | 165 | Sensor protein; GAF domain, histidine, kinase, PSI | 98.61 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 98.56 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 98.55 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.5 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 98.44 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 98.44 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.42 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 98.4 | |
| 2vjw_A | 149 | GAF-B, GAF family protein; histidine kinase, hypox | 98.4 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 98.4 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 98.39 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 98.38 | |
| 2w3g_A | 153 | DOSS, two component sensor histidine kinase DEVS ( | 98.37 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 98.36 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.34 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 98.33 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 98.33 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 98.26 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 97.51 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 98.15 | |
| 3dba_A | 180 | CONE CGMP-specific 3',5'-cyclic phosphodiesterase | 98.15 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 98.11 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 98.05 | |
| 3mmh_A | 167 | FRMSR, methionine-R-sulfoxide reductase; oxidoredu | 98.01 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 98.0 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.95 | |
| 1vhm_A | 195 | Protein YEBR; structural genomics, unknown functio | 97.62 | |
| 1f5m_A | 180 | GAF; CGMP binding, signaling protein; 1.90A {Sacch | 97.43 | |
| 3ksh_A | 160 | Putative uncharacterized protein; FRMSR, free-Met- | 97.36 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.34 | |
| 3zcc_A | 114 | HAMP, osmolarity sensor protein ENVZ; signaling pr | 97.32 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.27 | |
| 3rfb_A | 171 | Putative uncharacterized protein; FRMSR, GAF, oxid | 97.26 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.21 | |
| 3cit_A | 160 | Sensor histidine kinase; MEGA: 3.30.450.40, struct | 96.86 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 96.26 | |
| 3zrx_A | 115 | AF1503 protein, osmolarity sensor protein ENVZ; si | 96.23 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 96.17 | |
| 1oj5_A | 132 | Steroid receptor coactivator 1A; transcriptional c | 96.01 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 95.96 | |
| 1oj5_A | 132 | Steroid receptor coactivator 1A; transcriptional c | 95.91 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 95.44 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 92.82 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 91.99 | |
| 3szt_A | 237 | QCSR, quorum-sensing control repressor; quorum sen | 87.98 | |
| 3eea_A | 162 | GAF domain/HD domain protein; structural genomics, | 85.94 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 85.79 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 81.66 |
| >3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* | Back alignment and structure |
|---|
| >3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* | Back alignment and structure |
|---|
| >3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* | Back alignment and structure |
|---|
| >4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
| >4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* | Back alignment and structure |
|---|
| >2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* | Back alignment and structure |
|---|
| >2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} | Back alignment and structure |
|---|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} | Back alignment and structure |
|---|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* | Back alignment and structure |
|---|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* | Back alignment and structure |
|---|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
| >3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} | Back alignment and structure |
|---|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 | Back alignment and structure |
|---|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A | Back alignment and structure |
|---|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 | Back alignment and structure |
|---|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
| >3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} | Back alignment and structure |
|---|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
| >3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
| >2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
| >2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* | Back alignment and structure |
|---|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} | Back alignment and structure |
|---|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
| >3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 | Back alignment and structure |
|---|
| >1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* | Back alignment and structure |
|---|
| >3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 953 | ||||
| d2veaa2 | 188 | d.110.2.4 (A:327-514) Phytochrome-like protein Cph | 4e-74 | |
| d2o9ca1 | 187 | d.110.2.1 (A:135-321) Bacteriophytochrome BphP {De | 5e-72 | |
| d3c2wa1 | 192 | d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Ps | 3e-68 | |
| d2oola1 | 194 | d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodop | 3e-67 | |
| d2veaa1 | 196 | d.110.2.1 (A:131-326) Phytochrome-like protein Cph | 1e-66 | |
| d3c2wa2 | 185 | d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Ps | 1e-58 | |
| d2k2na1 | 170 | d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec | 7e-46 | |
| d2veaa3 | 127 | d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 | 1e-26 | |
| d2o9ca2 | 127 | d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Dein | 7e-24 | |
| d3c2wa3 | 113 | d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseu | 1e-22 | |
| d2oola2 | 114 | d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodops | 3e-22 | |
| d1mzua_ | 110 | d.110.3.1 (A:) PYP domain of sensor histidine kina | 0.001 | |
| d1mzua_ | 110 | d.110.3.1 (A:) PYP domain of sensor histidine kina | 0.002 |
| >d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: GAF domain-like family: Phytochrome-specific domain domain: Phytochrome-like protein Cph1 species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 239 bits (612), Expect = 4e-74
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 404 HILRTQTVLCDMLLRDSPV--GIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIK 461
+ + VL D + + G+ ++ L GAA+ + KL L+G TP E+ ++
Sbjct: 4 QLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQ 63
Query: 462 DIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKE 521
+ +W LE T SL YP A+ G+ A+ I +FL WFR +
Sbjct: 64 YLLQW-LENREVQDVFFTSSL-SQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQT 121
Query: 522 IKWGGA---KHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQ-----L 573
+ WGG +++ +DG ++HPR SF + E+V+ +SLPW+ VE+ + +L+ L
Sbjct: 122 VNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNL 181
Query: 574 ILR 576
ILR
Sbjct: 182 ILR 184
|
| >d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Length = 187 | Back information, alignment and structure |
|---|
| >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 192 | Back information, alignment and structure |
|---|
| >d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 194 | Back information, alignment and structure |
|---|
| >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 196 | Back information, alignment and structure |
|---|
| >d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 185 | Back information, alignment and structure |
|---|
| >d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 | Back information, alignment and structure |
|---|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 127 | Back information, alignment and structure |
|---|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
| >d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 113 | Back information, alignment and structure |
|---|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114 | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} Length = 110 | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} Length = 110 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| d2o9ca1 | 187 | Bacteriophytochrome BphP {Deinococcus radiodurans | 100.0 | |
| d2veaa1 | 196 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 100.0 | |
| d2oola1 | 194 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 100.0 | |
| d3c2wa1 | 192 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 100.0 | |
| d2k2na1 | 170 | Sensor protein CYB2465 {Synechococcus sp. [TaxId: | 100.0 | |
| d2veaa2 | 188 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 99.97 | |
| d3c2wa2 | 185 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 99.97 | |
| d2oola2 | 114 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 99.89 | |
| d2veaa3 | 127 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 99.88 | |
| d2o9ca2 | 127 | Bacteriophytochrome BphP {Deinococcus radiodurans | 99.86 | |
| d3c2wa3 | 113 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 99.86 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 99.56 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 99.54 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 99.5 | |
| d2c2aa1 | 89 | Sensor histidine kinase TM0853 {Thermotoga maritim | 99.5 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 99.48 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 99.46 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 99.44 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 99.41 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 99.36 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 99.35 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 99.33 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 99.31 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 99.27 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 99.23 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 99.21 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 98.97 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 98.91 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 98.86 | |
| d1joya_ | 67 | EnvZ histidine kinase {Escherichia coli [TaxId: 56 | 98.8 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 98.8 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 98.79 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 98.75 | |
| d1mc0a2 | 154 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 98.68 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 98.59 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 98.3 | |
| d1mc0a1 | 187 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 98.26 | |
| d1vhma_ | 159 | Hypothetical protein YebR {Escherichia coli [TaxId | 97.5 | |
| d2oola2 | 114 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 95.98 | |
| d1f5ma_ | 176 | Hypothetical protein ykl069wp {Baker's yeast (Sacc | 95.87 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 95.41 | |
| d2veaa3 | 127 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 85.17 | |
| d2o9ca2 | 127 | Bacteriophytochrome BphP {Deinococcus radiodurans | 82.98 |
| >d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: GAF domain-like family: GAF domain domain: Bacteriophytochrome BphP species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=2.6e-50 Score=406.41 Aligned_cols=179 Identities=39% Similarity=0.658 Sum_probs=172.2
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHH
Q 002210 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (953)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~l 278 (953)
+++..++.+|++ +.|+++||+++|+|||+++||||||||||++||+|+||||++.++++|++|++||++|||++++++
T Consensus 4 ~~l~~~~~~ir~--s~dl~~Il~tav~evr~~L~~DRV~IYrf~~d~~g~vvaEs~~~~~~S~lg~~~p~~~~~~~~~~~ 81 (187)
T d2o9ca1 4 HALRNAMFALES--APNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARAL 81 (187)
T ss_dssp HHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCCCEeEEEEECCCCCEEEEEEEECCCCCCCCCCccChHHHHHHHHHH
Confidence 456788999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEeecCCCCCceee--eCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCc
Q 002210 279 IMKNKVRMICDCLAPPVKVI--QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (953)
Q Consensus 279 y~~n~~r~i~D~~~~~~~l~--~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~ 356 (953)
|.+|++|+|+|++.+++++. .++.++.++||+.++||++||||++||+||||+|+|++||+++ |+
T Consensus 82 ~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~dl~~~~l~~~s~~~~~~L~~~~vkA~L~vPI~~~-------------~~ 148 (187)
T d2o9ca1 82 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG-------------GQ 148 (187)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TE
T ss_pred HHcCCeEEEeecccCccccccccccccCCCcccccchhccccHHHHHHHHhcCCCeEEEEEEEEC-------------Ce
Confidence 99999999999999999987 4678899999999999999999999999999999999999998 99
Q ss_pred eeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 357 LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|||||+||||+||+|++++|.+||+|+|++|++|+.
T Consensus 149 LWGLL~~H~~~pr~~~~~~r~~~e~l~~~ls~~l~~ 184 (187)
T d2o9ca1 149 LWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQV 184 (187)
T ss_dssp EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998854
|
| >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} | Back information, alignment and structure |
|---|
| >d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|