Citrus Sinensis ID: 002212
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | 2.2.26 [Sep-21-2011] | |||||||
| Q91785 | 1388 | Kinesin-like protein KIF1 | N/A | no | 0.266 | 0.182 | 0.454 | 2e-55 | |
| Q9GYZ0 | 1463 | Kinesin-like protein KIF1 | yes | no | 0.196 | 0.127 | 0.577 | 5e-55 | |
| Q9NS87 | 1388 | Kinesin-like protein KIF1 | yes | no | 0.256 | 0.175 | 0.472 | 2e-54 | |
| Q6P9L6 | 1387 | Kinesin-like protein KIF1 | yes | no | 0.253 | 0.174 | 0.472 | 3e-54 | |
| Q498L9 | 1387 | Kinesin-like protein KIF1 | N/A | no | 0.265 | 0.182 | 0.457 | 4e-54 | |
| Q7TSP2 | 1385 | Kinesin-like protein KIF1 | yes | no | 0.253 | 0.174 | 0.476 | 4e-54 | |
| Q9LDN0 | 1292 | Kinesin-like protein KIN1 | no | no | 0.193 | 0.142 | 0.515 | 4e-48 | |
| Q8L7Y8 | 1313 | Kinesin-like protein KIN1 | no | no | 0.175 | 0.127 | 0.570 | 1e-46 | |
| P46873 | 699 | Osmotic avoidance abnorma | yes | no | 0.169 | 0.231 | 0.557 | 2e-43 | |
| O15066 | 747 | Kinesin-like protein KIF3 | no | no | 0.166 | 0.212 | 0.550 | 7e-43 |
| >sp|Q91785|KI15A_XENLA Kinesin-like protein KIF15-A OS=Xenopus laevis GN=kif15-a PE=1 SV=1 | Back alignment and function desciption |
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Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 174/284 (61%), Gaps = 30/284 (10%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MNR SSRSH+VFT IES ++ + + R ++LNLVDLAGSERQK + EG RLKEA +I
Sbjct: 230 MNRESSRSHAVFTVTIESMEKTNDLVNIRSSQLNLVDLAGSERQKDTQTEGVRLKEAGSI 289
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSL 120
N+SLS LG VI LV ++NG+ H+ YRDSKLTFLL+DSLGGN+KT IAN+ P S C
Sbjct: 290 NRSLSCLGQVITALVDVANGRQRHICYRDSKLTFLLRDSLGGNAKTFYIANVHPGSKCFG 349
Query: 121 ETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVSRLRGIAHGGAESLVND 180
ETLSTL+FAQRAK IKN A+VNED G+V ++ E+++LK+++S+L
Sbjct: 350 ETLSTLQFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKKLKEQLSQL-------------- 395
Query: 181 SPTVSFPGS-PGSIKWEGLHESFSPLISDKRMSQKKDYELALVGAFRREKEKDISLQALA 239
G PG I + P + D M ++ A++ + ++EK + LQ +
Sbjct: 396 -----LSGQMPGDISVARV-----PSVGDNNMDYMNNFIEAMMILEKSDREKKVLLQKVV 445
Query: 240 AENQAALRLAKQREDEIQGLKMRLRFREAGIKRLE-AVASGKIS 282
L ++E IQ KM ++FRE I RLE A G+IS
Sbjct: 446 QLED----LCNKKEKFIQSNKMIVKFREDHISRLEKAHKEGRIS 485
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Plus-end directed kinesin-like motor enzyme involved in mitotic spindle assembly. Required for centrosome separation and maintenance of spindle bipolarity during mitosis. Xenopus laevis (taxid: 8355) |
| >sp|Q9GYZ0|KIF15_STRPU Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9NS87|KIF15_HUMAN Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6P9L6|KIF15_MOUSE Kinesin-like protein KIF15 OS=Mus musculus GN=Kif15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q498L9|KI15B_XENLA Kinesin-like protein KIF15-B OS=Xenopus laevis GN=kif15-b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7TSP2|KIF15_RAT Kinesin-like protein KIF15 OS=Rattus norvegicus GN=Kif15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LDN0|KN12A_ARATH Kinesin-like protein KIN12A OS=Arabidopsis thaliana GN=KIN12A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8L7Y8|KN12B_ARATH Kinesin-like protein KIN12B OS=Arabidopsis thaliana GN=KIN12B PE=1 SV=1 | Back alignment and function description |
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| >sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 | Back alignment and function description |
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| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| 224104939 | 1235 | predicted protein [Populus trichocarpa] | 0.950 | 0.733 | 0.636 | 0.0 | |
| 224131706 | 1197 | predicted protein [Populus trichocarpa] | 0.906 | 0.721 | 0.620 | 0.0 | |
| 356543636 | 1342 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.691 | 0.557 | 0.0 | |
| 356550036 | 1342 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.691 | 0.550 | 0.0 | |
| 296084023 | 1121 | unnamed protein product [Vitis vinifera] | 0.793 | 0.674 | 0.653 | 0.0 | |
| 357453321 | 1364 | Kinesin-like protein [Medicago truncatul | 0.988 | 0.690 | 0.527 | 0.0 | |
| 297815512 | 1231 | hypothetical protein ARALYDRAFT_484830 [ | 0.947 | 0.733 | 0.536 | 0.0 | |
| 7594566 | 1229 | kinesin-like protein [Arabidopsis thalia | 0.945 | 0.733 | 0.535 | 0.0 | |
| 334185721 | 1263 | kinesin motor protein-like protein [Arab | 0.949 | 0.716 | 0.521 | 0.0 | |
| 255575817 | 1381 | kinesin, putative [Ricinus communis] gi| | 0.588 | 0.406 | 0.686 | 0.0 |
| >gi|224104939|ref|XP_002313626.1| predicted protein [Populus trichocarpa] gi|222850034|gb|EEE87581.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/968 (63%), Positives = 746/968 (77%), Gaps = 62/968 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN ASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI
Sbjct: 298 MNCASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 357
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSL 120
NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPS CCSL
Sbjct: 358 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSLCCSL 417
Query: 121 ETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVSRLRGIAHGGAESLVND 180
ETLSTLKFAQRAKFIKNNAI+NEDA GDVI MRM+IQQLKKEVSRLR + + G E+L ND
Sbjct: 418 ETLSTLKFAQRAKFIKNNAIINEDALGDVIVMRMQIQQLKKEVSRLRSLVNEGVENLDND 477
Query: 181 SPTVSFPGSPGSIKWEGLHESFSPLISDKRMSQKKDYELALVGAFRREKEKDISLQALAA 240
+ ++SF GSPG KWEGLH S SPL+ +KRMSQKKDYE+AL+GAFRREK+KDI+L+AL A
Sbjct: 478 TSSLSFLGSPGQFKWEGLHGSSSPLMPEKRMSQKKDYEVALIGAFRREKDKDIALKALKA 537
Query: 241 ENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIES 300
ENQAA++LAKQREDEI+ LKM LRFREAG+KRLEAVA+GKISAETHLLKEKEE LKEIE
Sbjct: 538 ENQAAMQLAKQREDEIKSLKMILRFREAGVKRLEAVAAGKISAETHLLKEKEEHLKEIEV 597
Query: 301 F-YEGGEREMMSQQIMVLQNKL----LEALDWKLMHESDSSAVQ------EPGSPWRTSV 349
+ + GEREMM++QIMVLQNK+ ++ + W+ + S Q EP SP ++S+
Sbjct: 598 WRTQEGEREMMNEQIMVLQNKIGNLCMKRIPWQFRYNSSGCISQSFFHNIEPRSPCQSSI 657
Query: 350 NEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409
NEENEFLR+Q I NQAE++ L KQLEF +EK++LERHV+DL+ KLEE+ + E T+
Sbjct: 658 NEENEFLRIQTIQNQAEIDLLHKQLEFCFEEKDRLERHVNDLMMKLEEERSYRATNERTE 717
Query: 410 GFQ--LSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLN 467
+ LST+ +N +DQ+ELKTMVDAIA ASQREAEAH+ AI L ++EL+L+LE
Sbjct: 718 QLELPLSTDASVVNGNDQMELKTMVDAIAAASQREAEAHEKAITLYTENNELQLKLET-- 775
Query: 468 KEKSEFNKLNDELQLKHKVLIEEKSNLIELYERK-------------------EMEMKRE 508
F N+ELQ K K LIEEK++LIE+YER E+EMK
Sbjct: 776 -----FIVANEELQSKLKALIEEKNSLIEMYERAASKSSYNNVNDSESEQNGMELEMKT- 829
Query: 509 AENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEID 568
ENLE Q E++EENEKL+GLYE AM ERDE +R +S QNR E+ GE++CPEK VE+D
Sbjct: 830 VENLEQQRMELHEENEKLMGLYEIAMHERDELRRRLSSYEQNRVESRGELHCPEKHVEVD 889
Query: 569 GEAAFADMETEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDK 628
GE + + E +R +L A E+AF + D+
Sbjct: 890 GEKCLQSCAPPIYLGTKVSMEE----IRARLLNA-----------------EQAFVDFDE 928
Query: 629 LSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQR 688
+ +I A E+ +Q KQ++ SL+ L SEMQ++KALVD KL AL+YSLS+FSSS AYFEQR
Sbjct: 929 VLREIEATEEGLQLKQEEFRSLELLSSEMQDKKALVDKKLSALRYSLSNFSSSVAYFEQR 988
Query: 689 AARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEE 748
R++ARV S +Y +KKE+L L+ CK + E LG++Q+SE ELRN LA+LKSKLEE+
Sbjct: 989 EVRAKARVNASVSYFRKKKEELARLQVCKEDAEANLGRIQQSEIELRNILAVLKSKLEEK 1048
Query: 749 NRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVK 808
N+RQE+EKVLFAIDNIEKVD QRNW LGGKATELLKSEEEKTKLQ+E+KL RE+LG+VK
Sbjct: 1049 NQRQESEKVLFAIDNIEKVDTSQRNWQLGGKATELLKSEEEKTKLQSEMKLSREKLGLVK 1108
Query: 809 REFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIE 868
REF+DL+K+ KI+S++Q VQM+IQK S+SVEEMELA Q V+ E+E LLEI E G +EI+
Sbjct: 1109 REFDDLSKRLDKIESEIQAVQMDIQKGSKSVEEMELALQTVIHEKETLLEITENGMSEIQ 1168
Query: 869 SMILEYMQHVFEADLKEAEMRIVEEELQLELRRMDELRVLRAAAAEKKAQLLEHTKSKSC 928
SMILEY Q VF+ DLKEAE++ +EEELQLE RR+++LR +RAAA+EK +LL++T S SC
Sbjct: 1169 SMILEYQQCVFDTDLKEAELKTLEEELQLEFRRIEDLRKVRAAASEKMTRLLQNTSSHSC 1228
Query: 929 LFSEKMQE 936
F+EKM+E
Sbjct: 1229 -FAEKMEE 1235
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131706|ref|XP_002328088.1| predicted protein [Populus trichocarpa] gi|222837603|gb|EEE75968.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356543636|ref|XP_003540266.1| PREDICTED: uncharacterized protein LOC100776015 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356550036|ref|XP_003543396.1| PREDICTED: uncharacterized protein LOC100814373 [Glycine max] | Back alignment and taxonomy information |
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| >gi|296084023|emb|CBI24411.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357453321|ref|XP_003596937.1| Kinesin-like protein [Medicago truncatula] gi|355485985|gb|AES67188.1| Kinesin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297815512|ref|XP_002875639.1| hypothetical protein ARALYDRAFT_484830 [Arabidopsis lyrata subsp. lyrata] gi|297321477|gb|EFH51898.1| hypothetical protein ARALYDRAFT_484830 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|7594566|emb|CAB88133.1| kinesin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334185721|ref|NP_189991.2| kinesin motor protein-like protein [Arabidopsis thaliana] gi|332644335|gb|AEE77856.1| kinesin motor protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255575817|ref|XP_002528807.1| kinesin, putative [Ricinus communis] gi|223531760|gb|EEF33580.1| kinesin, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| TAIR|locus:2085844 | 2771 | POK2 "phragmoplast orienting k | 0.296 | 0.102 | 0.510 | 6.3e-79 | |
| TAIR|locus:2089000 | 2066 | POK1 "phragmoplast orienting k | 0.544 | 0.251 | 0.337 | 2.6e-62 | |
| UNIPROTKB|E1BC41 | 1388 | KIF15 "Uncharacterized protein | 0.174 | 0.119 | 0.572 | 1.3e-50 | |
| UNIPROTKB|E2RJF8 | 1316 | KIF15 "Uncharacterized protein | 0.174 | 0.126 | 0.578 | 3.5e-49 | |
| UNIPROTKB|F1PSL9 | 1384 | KIF15 "Uncharacterized protein | 0.174 | 0.119 | 0.578 | 5.5e-48 | |
| UNIPROTKB|F1LTJ7 | 1384 | Kif15 "Kinesin-like protein KI | 0.195 | 0.134 | 0.526 | 2.4e-47 | |
| UNIPROTKB|D6RCT7 | 711 | KIF15 "Kinesin-like protein KI | 0.174 | 0.233 | 0.578 | 5.7e-46 | |
| RGD|727790 | 1385 | Kif15 "kinesin family member 1 | 0.195 | 0.134 | 0.526 | 5.6e-45 | |
| UNIPROTKB|Q7TSP2 | 1385 | Kif15 "Kinesin-like protein KI | 0.195 | 0.134 | 0.526 | 5.6e-45 | |
| MGI|MGI:1098258 | 1387 | Kif15 "kinesin family member 1 | 0.173 | 0.118 | 0.575 | 1.9e-44 |
| TAIR|locus:2085844 POK2 "phragmoplast orienting kinesin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 668 (240.2 bits), Expect = 6.3e-79, Sum P(4) = 6.3e-79
Identities = 151/296 (51%), Positives = 194/296 (65%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MNR SSRSHSVFTC+IES+WE + RFARLNLVDLAGSERQK+SGAEG+RLKEA +I
Sbjct: 396 MNRESSRSHSVFTCVIESRWEKDSTANMRFARLNLVDLAGSERQKTSGAEGDRLKEAASI 455
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLSTLG VIM LV ++NGK H+PYRDS+LTFLLQDSLGGNSKT+IIAN
Sbjct: 456 NKSLSTLGHVIMVLVDVANGKPRHIPYRDSRLTFLLQDSLGGNSKTMIIANASPSVSCAA 515
Query: 121 XXXXXXKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVSRLRGIAHGGAESLVND 180
KFAQRAK I+NNA+VNED++ DV+ +R +I+ LK+E+S L+ + +L
Sbjct: 516 ETLNTLKFAQRAKLIQNNAVVNEDSNEDVLELRRQIRLLKEELSLLK--RQNISRALSFG 573
Query: 181 SPTVSFP----GSPGSIKWE-GLHESFSPLISDK----RMSQK--KDYELALVGAFRREK 229
S T +F SP S+ E G ++ + L+ + RMS+K K E+ L G+ RRE
Sbjct: 574 SATANFAESQVDSPSSVMHETGQQQAGNLLVYESGGCVRMSRKQLKSLEITLAGSLRREH 633
Query: 230 EKDISXXXXXXXXXXXXXXXKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAET 285
D S +QRE++ + KM LRFRE I+RLE++ ISA++
Sbjct: 634 VADASIKKLEAEIEHLNRLVRQREEDTRSTKMMLRFREDKIQRLESLLGNHISADS 689
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| TAIR|locus:2089000 POK1 "phragmoplast orienting kinesin 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BC41 KIF15 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RJF8 KIF15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PSL9 KIF15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LTJ7 Kif15 "Kinesin-like protein KIF15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D6RCT7 KIF15 "Kinesin-like protein KIF15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|727790 Kif15 "kinesin family member 15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7TSP2 Kif15 "Kinesin-like protein KIF15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1098258 Kif15 "kinesin family member 15" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 953 | |||
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 3e-69 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 3e-66 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 2e-60 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-59 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 2e-56 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-55 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-51 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 1e-49 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 4e-48 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-47 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 9e-47 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-45 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-44 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 1e-38 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 6e-35 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-32 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-31 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 2e-30 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 4e-29 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-05 | |
| pfam12711 | 86 | pfam12711, Kinesin-relat_1, Kinesin motor | 5e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 |
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 3e-69
Identities = 100/135 (74%), Positives = 110/135 (81%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSH+VFTC IES + T+ R +RLNLVDLAGSERQK GAEG RLKEA NI
Sbjct: 203 MNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNI 262
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSL 120
NKSLSTLG VIM LV +++GK HVPYRDSKLTFLL+DSLGGN+KT IIAN+SPSS C
Sbjct: 263 NKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFG 322
Query: 121 ETLSTLKFAQRAKFI 135
ETLSTLKFAQRAK I
Sbjct: 323 ETLSTLKFAQRAKLI 337
|
Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|193187 pfam12711, Kinesin-relat_1, Kinesin motor | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 99.98 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 99.98 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 99.97 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 99.97 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 99.97 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 99.97 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 99.96 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.96 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 99.96 | |
| PF12711 | 86 | Kinesin-relat_1: Kinesin motor; InterPro: IPR02465 | 98.65 | |
| PF06548 | 488 | Kinesin-related: Kinesin-related; InterPro: IPR010 | 98.52 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.07 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.01 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.0 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.98 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 97.92 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 97.78 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 97.71 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 97.59 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 97.59 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 97.42 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.29 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.2 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.67 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 96.58 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 96.58 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 96.47 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.4 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 96.37 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 96.32 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.24 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.9 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 95.32 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 94.91 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 94.39 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 94.3 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 94.04 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 93.91 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 93.6 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 93.57 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 93.41 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 93.38 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 93.32 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 93.22 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 92.74 | |
| PRK11637 | 428 | AmiB activator; Provisional | 92.7 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 92.34 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 92.2 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 92.08 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 92.07 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 91.69 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 90.6 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 90.59 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 90.37 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 90.18 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 90.17 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 89.69 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 89.45 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 89.23 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 89.13 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 89.04 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 88.0 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 87.93 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 87.62 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 87.56 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.45 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 87.42 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 87.0 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 86.19 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 85.32 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 85.21 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 84.42 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 83.81 | |
| PRK11637 | 428 | AmiB activator; Provisional | 82.68 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 82.64 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 82.13 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 81.68 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 80.9 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 80.8 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 80.75 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 80.37 |
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=434.18 Aligned_cols=170 Identities=58% Similarity=0.856 Sum_probs=156.1
Q ss_pred CCCCCCccceeEEEEEEEeec--CCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc
Q 002212 1 MNRASSRSHSVFTCIIESKWE--SQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS 78 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~--~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s 78 (953)
||..|||||+||||+|.+... .++....+.|+|+|||||||||.+.+++.|.+++||++||+||++||+||.+|+..+
T Consensus 297 mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~S 376 (1320)
T PLN03188 297 INAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS 376 (1320)
T ss_pred CCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 799999999999999987643 344455678999999999999999999999999999999999999999999998644
Q ss_pred -CCCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHH
Q 002212 79 -NGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQ 157 (953)
Q Consensus 79 -~gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq 157 (953)
.++..||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|.|++|....+++..++..|.
T Consensus 377 q~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr 456 (1320)
T PLN03188 377 QTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIR 456 (1320)
T ss_pred ccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998888878889999
Q ss_pred HHHHHHHHHHhhh
Q 002212 158 QLKKEVSRLRGIA 170 (953)
Q Consensus 158 ~LK~ELsrLR~~l 170 (953)
+|+.|+.+|+...
T Consensus 457 ~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 457 QLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
|
|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 953 | ||||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-36 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 7e-31 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-29 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 2e-28 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 1e-27 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 7e-27 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 9e-27 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-26 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-26 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 5e-26 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 7e-26 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-25 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 2e-25 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-25 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 6e-25 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 6e-25 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 6e-25 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 7e-25 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 7e-25 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 7e-25 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 7e-25 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 8e-25 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 5e-24 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 5e-24 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 6e-24 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-24 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 2e-23 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 4e-23 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 5e-23 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-22 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 3e-22 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 6e-22 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-21 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 3e-21 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-21 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 5e-21 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-21 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 8e-21 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-20 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-20 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-20 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-20 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-17 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-15 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 3e-15 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 3e-15 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 3e-15 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 2e-14 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-14 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-14 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 3e-12 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 7e-12 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 8e-11 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-10 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 2e-10 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 5e-10 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 4e-09 |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
|
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 8e-85
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHSVF ++ + +L LVDLAGSE+ +GAEG L EA NI
Sbjct: 204 MNEHSSRSHSVFLINVKQENLENQ--KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNI 261
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSL 120
NKSLS LG VI L G H+PYRDSKLT +LQ+SLGGN++T I+ SP+S
Sbjct: 262 NKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNES 318
Query: 121 ETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVSRLRG 168
ET STL F +RAK +KN VNE+ + + + ++ K++ +RL+G
Sbjct: 319 ETKSTLDFGRRAKTVKNVVCVNEELTAE--EWKRRYEKEKEKNARLKG 364
|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.95 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 96.54 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.47 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 94.98 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 87.48 |
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=379.35 Aligned_cols=157 Identities=48% Similarity=0.620 Sum_probs=140.7
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||..|||||+||+|+|.+.+...+ ....|+|+|||||||||.+++++.|.|++|+++||+||++||+||.+|++
T Consensus 199 ~N~~SSRSH~if~i~v~~~~~~~~--~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---- 272 (369)
T 3cob_A 199 MNEQSSRSHLIVSVIIESTNLQTQ--AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS---- 272 (369)
T ss_dssp TTCHHHHSEEEEEEEEEEEETTTC--CEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHT----
T ss_pred CCCCCCcceEEEEEEEEEecCCCC--cEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 799999999999999998766443 34679999999999999999999999999999999999999999999975
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLK 160 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq~LK 160 (953)
+..||||||||||+||+|||||||+|+|||||||+..+++||++||+||+||+.|+|.|++|.++ .+|..|+
T Consensus 273 ~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--------~ei~~L~ 344 (369)
T 3cob_A 273 GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--------KEVARLK 344 (369)
T ss_dssp TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--------HHHHHHH
T ss_pred CCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--------HHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999987 3477888
Q ss_pred HHHHHHHhhhc
Q 002212 161 KEVSRLRGIAH 171 (953)
Q Consensus 161 ~ELsrLR~~l~ 171 (953)
+++..++...+
T Consensus 345 ~~l~~~~~~~~ 355 (369)
T 3cob_A 345 KLVSYWKEQAG 355 (369)
T ss_dssp HHTTCC-----
T ss_pred HHHHHHHHhcC
Confidence 88877776543
|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 953 | ||||
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-42 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-42 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 7e-42 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 1e-39 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-39 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 3e-37 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 6e-37 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-35 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-33 |
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]
Score = 156 bits (395), Expect = 2e-42
Identities = 65/137 (47%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SS SHS+F + + H + LNLVDLAGSER S G+RL+E NI
Sbjct: 208 SNEHSSASHSIFIIHLS--GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNI 265
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSL 120
NKSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NISPSS
Sbjct: 266 NKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 324
Query: 121 ETLSTLKFAQRAKFIKN 137
ETL++L+FA + +
Sbjct: 325 ETLNSLRFASKVNSTRL 341
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
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| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
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| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 99.97 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=5.2e-39 Score=344.29 Aligned_cols=156 Identities=47% Similarity=0.621 Sum_probs=128.7
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||..|||||+||+|+|.+.....+ ....|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|++
T Consensus 194 ~n~~ssRsH~i~~i~v~~~~~~~~--~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~---- 267 (364)
T d1sdma_ 194 MNEQSSRSHLIVSVIIESTNLQTQ--AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS---- 267 (364)
T ss_dssp TTCHHHHSEEEEEEEEEEEETTTC--CEEEEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHH----
T ss_pred ccccccccceEEEEEEEEeccCcc--eeeeEEEEeechhhccccccccccCceeeeccccccchhhHHHHHHHHHc----
Confidence 799999999999999998776544 34679999999999999999999999999999999999999999999976
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLK 160 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq~LK 160 (953)
+..|||||+||||+||+|+|||||+|+|||||||+..++.||++||+||++|+.|+|.|++|..... |..|+
T Consensus 268 ~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~~--------~~~l~ 339 (364)
T d1sdma_ 268 GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--------VARLK 339 (364)
T ss_dssp TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECHH--------HHHHH
T ss_pred CCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCHHH--------HHHHH
Confidence 4569999999999999999999999999999999999999999999999999999999999976532 55566
Q ss_pred HHHHHHHhhh
Q 002212 161 KEVSRLRGIA 170 (953)
Q Consensus 161 ~ELsrLR~~l 170 (953)
+++..|+..+
T Consensus 340 ~~i~~l~~~~ 349 (364)
T d1sdma_ 340 KLVSYWKEQA 349 (364)
T ss_dssp TTTTCC----
T ss_pred HHHHHHHHHH
Confidence 6666655443
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|