Citrus Sinensis ID: 002257

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940------
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
ccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcEcccccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHcccHHccccHHHHHHHHHHHHHHHcccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MVRDHILVFVAQVPPLLRVQLGECLKTIihadypeqwpHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpvYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSiyleipkqlldpnvFNAWMILFLNVlerpvpsegepadpeqrkswgwwkvKKWTVHILNRLYTrfgdlklqnpenRAFAQMFQKNYAGKILECHLNLLNrirvggylpdRVTNLILQYLSNSisknsmynllqPRLDVLLFEIVFPlmcfndndqklwdedpheyvRKGYDIIedlysprtasMDFVSELVRKRGKENLQKFIQFIVGIFKrydetpveykpyrqkdgALLAIGALCDklkqtepykSELERMLVQhvfpefsspvghlrAKAAWVAGQYAHINFSDQNNFRKALHSVVsglrdpelpvrvDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNtaeadedaddpgaLAAVGCLRAISTILEsvsrlphlfvqieptLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAidffpnilvpldnyisrgtahfltckepdyqQSLWSMVSSIMadknledgdiepapKLIEVVFQNCkgqvdhwvepYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNglrvnfkrehdkkvccLGLTSLLALTadqlpgeaLGRVFRATLDLLVAYKEQVAEAAkdeeaeddddmdgfqtddedddgdgsdkemgvdaedgdeaDSIRLQKLAAQARafrphdeddddsdddfsddeelqspidevdpfvFFVDTIKvmqasdplrfQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
MVRDHILVFvaqvppllRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSegepadpeqrkswgwwkvKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILesvsrlphlfVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNckgqvdhwvePYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAeaakdeeaeddddmdgfqtddedddgdgsDKEMGVDAEDGDEADSIRLQKLAAQArafrphdeddddsddDFSDDeelqspidevdpFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEkasaaatq
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTaeadedaddpgalaaVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVaeaakdeeaeddddmdgfqtddedddgdgsdKEMGVDAEDGDEADSIRLQKLAAQARAFRPHdeddddsdddfsddeeLQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVeiekekvekasaaaTQ
****HILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE****************SWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQ*************************************************************************************EVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVA************************
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFK**********PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEA**DEEA**DDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ***********************
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV************KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVA**************DGFQTD**********************ADSIRLQKLAA************************LQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANG********RVEIE*************
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKD**************************************DSIRLQKLAAQARAF***********DDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query946 2.2.26 [Sep-21-2011]
Q55CX91065 Probable importin-7 homol yes no 0.940 0.835 0.292 1e-119
O953731038 Importin-7 OS=Homo sapien yes no 0.958 0.873 0.305 1e-112
Q9EPL81038 Importin-7 OS=Mus musculu yes no 0.958 0.873 0.305 1e-112
O153971037 Importin-8 OS=Homo sapien no no 0.964 0.879 0.294 1e-105
Q7TMY71010 Importin-8 OS=Mus musculu no no 0.783 0.733 0.305 1e-101
O598091029 Probable importin c550.11 yes no 0.938 0.862 0.284 1e-100
P469701048 Nonsense-mediated mRNA de yes no 0.621 0.561 0.250 3e-48
Q04175944 Importin beta SMX1 OS=Sac no no 0.687 0.688 0.217 6e-32
Q8SR54939 Probable importin ECU10_0 yes no 0.581 0.585 0.202 3e-18
Q9ERK4971 Exportin-2 OS=Mus musculu no no 0.806 0.785 0.198 6e-09
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1 Back     alignment and function desciption
 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 281/960 (29%), Positives = 502/960 (52%), Gaps = 70/960 (7%)

Query: 1    MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGAL--- 57
             ++++++  +     L++ Q+   ++ I + D+PE+W  LL      +  Q V   L   
Sbjct: 87   FIKENLIDLLVHSHHLVQNQIEAMIEIIANRDFPEKWTSLLPKSIQYINTQDVKLILAGL 146

Query: 58   --FVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICK 115
                L I   +Y    D+++  +Y IV E F  LL I   L Q  + ++E A + K + K
Sbjct: 147  TSIQLGIKRFRYVTMGDKKKELLYTIVNEIFPLLLQILEFLSQ--HQTIESALMQKKVIK 204

Query: 116  IFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV-PSEGEPADPEQRKSWGWWKVKKWT 174
            IF  +I+ EIP  L+ P VFN W+  F+ +++RP+ P E      + RK+  WW +K+ T
Sbjct: 205  IFGYAIHFEIPDLLIQPEVFNKWLSQFVRIIQRPITPQENVKHADDCRKN-QWWLLKRTT 263

Query: 175  VHILNRLYTRFGD--LKLQNPENRAFAQMFQKNYAGKILEC---HLNLLNRIRVGGYLPD 229
              +LN L+ +         +   +A  ++F   Y+ ++++     L+ L ++  G +  +
Sbjct: 264  AKLLNLLFRKSATSVRSTDHSSVKALNKLFMPVYSVEVMKVFYEQLSTLEQLYKGVHY-E 322

Query: 230  RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKG 289
            R    +++Y S +I     Y  ++P L  L+ +++FP++CFND D +LW+ DP+E++R  
Sbjct: 323  RYQQKLIEYFSFAIKYGVTYVAMKPWLSTLIQQVLFPIICFNDRDAELWECDPNEFLRSQ 382

Query: 290  YDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE-TPVEYKPYRQKDG 348
            ++      + R   ++F+ ++V KRG+ NL   + F +    +Y+  T    K  R+KDG
Sbjct: 383  FESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSLNKYNAATNASEKNPREKDG 442

Query: 349  ALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ 408
             L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L+A+A  +  ++ +I F+D 
Sbjct: 443  VLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFLKARACSLFSEFYNIEFTDP 502

Query: 409  NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468
              F  AL  ++  + D +LPVRV +  ++ + V A + ++E+RPILPQLLD+ F L++E 
Sbjct: 503  VYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDELRPILPQLLDKIFSLLSEA 562

Query: 469  ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 528
            E+EDLV  +E+I+ +F  E+APYA+ LC+NL+  F R +   E+DE  +     A+  CL
Sbjct: 563  ESEDLVIAIESIIQRFKHEIAPYAVNLCKNLSEQFLRLLELEESDESGE--SGFASQECL 620

Query: 529  RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE 588
                T+L ++  +P +F  +E  ++PI++++ T+D     +E L I++++T++  +IS  
Sbjct: 621  GVYCTLLRALKDIPDVFNSLEQQIVPILQKLFTSDHMMYLDEALRILTFVTYYPKSISPL 680

Query: 589  MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD 648
            +WSL+P +M    + A DF  + + PLDNYIS GT +FL+ ++  Y + +++M   ++ D
Sbjct: 681  VWSLFPQIMNLFDECACDFASSYVNPLDNYISYGTEYFLSNQQ--YIEMVFNMYKKMVGD 738

Query: 649  KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLK-----CLLVQ 703
             N +  D     K++E + Q  KG++D+ + P L +   RL   +K+  K       L++
Sbjct: 739  INQQPVDAGDCCKIMESLIQRAKGRIDYMIVPVLELACGRLLNTDKNNQKSKEFTVYLLE 798

Query: 704  VIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLT 763
            +IA+ +YYN  ++   L    +   +F LWF  ++         +F+R +DKK+  L  +
Sbjct: 799  IIANCIYYNPLISTQYLESKNLVEPIFGLWFNRIK---------HFQRFYDKKISVLAFS 849

Query: 764  SLLALTADQ-----LPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTD- 817
            SLL L              L ++ + T D+L   KE   + A+ E+   D  +   + + 
Sbjct: 850  SLLTLNPSPNFVKFGTSLILEKMLQFTKDMLSIEKELDKQEAEREQKIKDGTLKPEEEEF 909

Query: 818  -DEDDDGDGSDKEM----------GVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSD 866
             DE+D+ D  D               D +  DE + + L  +      F    +  +D  
Sbjct: 910  IDENDEEDYFDNHKFEFEFTEIPDNQDCQHDDEGE-VFLDDIEKATEYFENGGDLGEDEG 968

Query: 867  DD----------------FSDDE--ELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQ 908
            D+                F D++  + ++PIDEVD F F +++I+     +P   Q +++
Sbjct: 969  DNFDDQNDDDDQDSEEDLFEDEDTPDFETPIDEVDGFEFMINSIQNFFQINPTCIQQISE 1028
May function in nuclear protein import.
Dictyostelium discoideum (taxid: 44689)
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1 Back     alignment and function description
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2 Back     alignment and function description
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2 Back     alignment and function description
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3 Back     alignment and function description
>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1 Back     alignment and function description
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2 Back     alignment and function description
>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SR54|IMPO_ENCCU Probable importin ECU10_0620 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU10_0620 PE=1 SV=1 Back     alignment and function description
>sp|Q9ERK4|XPO2_MOUSE Exportin-2 OS=Mus musculus GN=Cse1l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query946
3565689051032 PREDICTED: probable importin-7 homolog [ 0.998 0.915 0.897 0.0
2555736711032 Importin-7, putative [Ricinus communis] 0.997 0.914 0.918 0.0
2254337071034 PREDICTED: probable importin-7 homolog [ 0.998 0.913 0.910 0.0
2241288921045 predicted protein [Populus trichocarpa] 0.998 0.904 0.902 0.0
3565266251032 PREDICTED: probable importin-7 homolog [ 0.998 0.915 0.893 0.0
296089630 1080 unnamed protein product [Vitis vinifera] 0.998 0.875 0.867 0.0
224069064 1058 predicted protein [Populus trichocarpa] 0.998 0.893 0.875 0.0
3575027571035 Importin-7 [Medicago truncatula] gi|3554 0.998 0.913 0.885 0.0
4494666971029 PREDICTED: probable importin-7 homolog [ 0.994 0.914 0.854 0.0
4495084661029 PREDICTED: probable importin-7 homolog [ 0.994 0.914 0.860 0.0
>gi|356568905|ref|XP_003552648.1| PREDICTED: probable importin-7 homolog [Glycine max] Back     alignment and taxonomy information
 Score = 1719 bits (4453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 848/945 (89%), Positives = 904/945 (95%)

Query: 1    MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVL 60
            +VRDHILVFV QVPPLLRVQLGECLKT+IH+DYPEQWPHLLDWVKHNLQDQQV+GAL+VL
Sbjct: 87   VVRDHILVFVTQVPPLLRVQLGECLKTVIHSDYPEQWPHLLDWVKHNLQDQQVHGALYVL 146

Query: 61   RILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSS 120
            RILSRKYEFKSDEER PVYR+V+ETF HLLNIFNRLVQIVNPSLEVADLIKLICKIFWSS
Sbjct: 147  RILSRKYEFKSDEERVPVYRVVDETFPHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSS 206

Query: 121  IYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNR 180
            IYLEIPK L D N+FNAWM+LFLN+LERPVPSEG+P DP+ RKSWGWWKVKKWTVHILNR
Sbjct: 207  IYLEIPKLLFDQNIFNAWMMLFLNILERPVPSEGQPVDPDLRKSWGWWKVKKWTVHILNR 266

Query: 181  LYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLS 240
            LYTRFGDLKLQNPENRAFAQMFQK+YAGKILECHLNLLN IRVGGYLPDRV NLILQYLS
Sbjct: 267  LYTRFGDLKLQNPENRAFAQMFQKHYAGKILECHLNLLNVIRVGGYLPDRVINLILQYLS 326

Query: 241  NSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 300
            NSIS+NSMY LLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR
Sbjct: 327  NSISRNSMYTLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 386

Query: 301  TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 360
            TASMDFVSELVRKRGKENLQKFIQFIV IF+RYDE   E+KPYRQKDGALLAIGALCDKL
Sbjct: 387  TASMDFVSELVRKRGKENLQKFIQFIVEIFRRYDEVSAEHKPYRQKDGALLAIGALCDKL 446

Query: 361  KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 420
            KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR+AL  VVS
Sbjct: 447  KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRRALQCVVS 506

Query: 421  GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 480
             ++D ELPVRVDSVFALRSF+EAC+DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI
Sbjct: 507  RMQDSELPVRVDSVFALRSFIEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 566

Query: 481  VDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 540
            VDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE+ADDPGALAAVGCLRAISTILESVSR
Sbjct: 567  VDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEEADDPGALAAVGCLRAISTILESVSR 626

Query: 541  LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEAL 600
            LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISL+MWSLWPLMMEAL
Sbjct: 627  LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLDMWSLWPLMMEAL 686

Query: 601  ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAP 660
            ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW+M+SSIM+DKN+ED DI PAP
Sbjct: 687  ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWNMISSIMSDKNMEDNDIVPAP 746

Query: 661  KLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSIL 720
            KLIEVVFQNC+GQVDHW+EPYLRITVERLR  EKSYLKCL +QVIADALYYN++LTLSIL
Sbjct: 747  KLIEVVFQNCRGQVDHWLEPYLRITVERLRHTEKSYLKCLFMQVIADALYYNAALTLSIL 806

Query: 721  HKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGR 780
             KLGVA+E+F+LWF +LQQVKK+G+R NFKREH+KKVCCLGLTSLLAL ADQLP EALGR
Sbjct: 807  QKLGVASEIFHLWFHLLQQVKKSGMRANFKREHEKKVCCLGLTSLLALPADQLPAEALGR 866

Query: 781  VFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEA 840
            VFRA LDLLVAYKEQVAEAAK+EEAEDDDDMDGFQTDDED+DG G DKEMGVDA+DG++ 
Sbjct: 867  VFRANLDLLVAYKEQVAEAAKEEEAEDDDDMDGFQTDDEDEDGSGFDKEMGVDADDGEDT 926

Query: 841  DSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDP 900
            D+I L+KLA QA++FRPHD+DDDDSDDDFSDDEELQSPID+VDPFVFFVDTIKV+Q+SDP
Sbjct: 927  DTITLRKLAEQAKSFRPHDDDDDDSDDDFSDDEELQSPIDDVDPFVFFVDTIKVIQSSDP 986

Query: 901  LRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAAT 945
             RF NLTQTLEF YQALANGVAQHA+QRR EIEKEK+EK++AA  
Sbjct: 987  SRFVNLTQTLEFNYQALANGVAQHAEQRRAEIEKEKIEKSTAATA 1031

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573671|ref|XP_002527757.1| Importin-7, putative [Ricinus communis] gi|223532844|gb|EEF34618.1| Importin-7, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225433707|ref|XP_002268048.1| PREDICTED: probable importin-7 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128892|ref|XP_002320447.1| predicted protein [Populus trichocarpa] gi|222861220|gb|EEE98762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526625|ref|XP_003531917.1| PREDICTED: probable importin-7 homolog [Glycine max] Back     alignment and taxonomy information
>gi|296089630|emb|CBI39449.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224069064|ref|XP_002302891.1| predicted protein [Populus trichocarpa] gi|222844617|gb|EEE82164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357502757|ref|XP_003621667.1| Importin-7 [Medicago truncatula] gi|355496682|gb|AES77885.1| Importin-7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466697|ref|XP_004151062.1| PREDICTED: probable importin-7 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508466|ref|XP_004163320.1| PREDICTED: probable importin-7 homolog [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query946
TAIR|locus:20659391040 SAD2 "AT2G31660" [Arabidopsis 0.982 0.893 0.759 0.0
TAIR|locus:20777151030 AT3G59020 "AT3G59020" [Arabido 0.977 0.898 0.727 0.0
DICTYBASE|DDB_G02698601065 DDB_G0269860 "putative importi 0.791 0.703 0.310 8.9e-113
ZFIN|ZDB-GENE-030131-4581039 ipo7 "importin 7" [Danio rerio 0.797 0.725 0.319 1.2e-104
UNIPROTKB|F1NBA81009 IPO7 "Uncharacterized protein" 0.956 0.896 0.289 3.2e-104
ASPGD|ASPL00000089541048 kapD [Emericella nidulans (tax 0.800 0.722 0.288 6.5e-104
FB|FBgn00262521049 msk "moleskin" [Drosophila mel 0.811 0.732 0.299 8.3e-104
UNIPROTKB|E1BGE51038 IPO7 "Uncharacterized protein" 0.956 0.871 0.288 1.1e-103
UNIPROTKB|F6X4J21038 IPO7 "Uncharacterized protein" 0.956 0.871 0.288 1.1e-103
UNIPROTKB|O953731038 IPO7 "Importin-7" [Homo sapien 0.956 0.871 0.288 1.1e-103
TAIR|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3728 (1317.4 bits), Expect = 0., P = 0.
 Identities = 706/930 (75%), Positives = 791/930 (85%)

Query:     1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVL 60
             +VRD+ILV+V QVP LLR QLGE LKTII+ADYPEQWP LLDWVK+NLQ+QQ+YGALFVL
Sbjct:    92 LVRDNILVYVTQVPTLLRSQLGESLKTIIYADYPEQWPRLLDWVKYNLQNQQIYGALFVL 151

Query:    61 RILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSS 120
             RILSRKYEFKSDEERTPV RIVEETF  LL IFN L+QI NPSLE+A+L+KLICKIFWSS
Sbjct:   152 RILSRKYEFKSDEERTPVSRIVEETFPQLLTIFNGLIQIPNPSLEIAELMKLICKIFWSS 211

Query:   121 IYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNR 180
             IYLE+P+QL D NVFNAWM+LFL+V ERPVP EG+P DPE RKSWGWWKVKKWTVHILNR
Sbjct:   212 IYLELPRQLFDLNVFNAWMVLFLSVSERPVPVEGQPMDPELRKSWGWWKVKKWTVHILNR 271

Query:   181 LYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLS 240
             LY+RFGD KLQ+PEN+ FAQMFQKNYAG+ILE HLN LN IRVGGYLPDRV NL+LQYLS
Sbjct:   272 LYSRFGDPKLQSPENKPFAQMFQKNYAGRILEGHLNFLNTIRVGGYLPDRVINLLLQYLS 331

Query:   241 NSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 300
             NSISKNSMY LL PRLDVLLFEIVFPLMCFNDNDQKLW+EDPHEYVRKGY+IIEDLYSPR
Sbjct:   332 NSISKNSMYKLLLPRLDVLLFEIVFPLMCFNDNDQKLWEEDPHEYVRKGYNIIEDLYSPR 391

Query:   301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 360
             TASMDFV+ELVRKRGKENL KF++F+V IF  Y++  VE KPYRQKDGA+LA+GALCDKL
Sbjct:   392 TASMDFVNELVRKRGKENLPKFVKFVVEIFLSYEKATVEEKPYRQKDGAMLAVGALCDKL 451

Query:   361 KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 420
             KQT+PYKS+LE MLVQH+FP+F+SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS
Sbjct:   452 KQTDPYKSQLELMLVQHIFPDFNSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 511

Query:   421 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 480
             GLRDP+LPVRVDSVFALRSFVEAC+DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI
Sbjct:   512 GLRDPDLPVRVDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 571

Query:   481 VDKFGEEMAPYALGLCQNLAAAFWRCMNTXXXXXXXXXXXXXXXVGCLRAISTILESVSR 540
             VDKFGEEMAP+A GLCQNLAAAFWRC+NT               VGCLRAISTILESVS 
Sbjct:   572 VDKFGEEMAPFAFGLCQNLAAAFWRCLNTSEANDDSDDMGALAAVGCLRAISTILESVSS 631

Query:   541 LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEAL 600
             LP LFV+IEPT+LPIM++MLTTDGQEVFEEVLEI SYMTF+SP+ISL++WSLWPLM+EAL
Sbjct:   632 LPQLFVEIEPTILPIMQKMLTTDGQEVFEEVLEIASYMTFYSPSISLDIWSLWPLMVEAL 691

Query:   601 ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAP 660
              DW IDFFPNILVP+DN+ISRGTAHFLTCKEPDYQQSL++++S++M D+N+ED +IE AP
Sbjct:   692 VDWGIDFFPNILVPMDNFISRGTAHFLTCKEPDYQQSLYNVLSTLMTDRNIEDSEIESAP 751

Query:   661 KLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSIL 720
             KLIEVVFQNCKGQVD WVEPYLR+TV+RL+RAE SY+K LL+QV+A+ LYYN  LTL +L
Sbjct:   752 KLIEVVFQNCKGQVDQWVEPYLRLTVDRLQRAETSYVKSLLIQVVANMLYYNPGLTLGVL 811

Query:   721 HKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGR 780
             H  G+A++VF+LWFQMLQQ +K+GL  NFKREHDKKVCCLGLTSLLAL   Q P EAL R
Sbjct:   812 HNTGLASKVFDLWFQMLQQKRKSGLPANFKREHDKKVCCLGLTSLLALPGGQFPDEALQR 871

Query:   781 VFRATLDLLVAYKEQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEMGVDAEDGDEA 840
             VFRATLDLLVAYK Q+                                EM  D E+GDEA
Sbjct:   872 VFRATLDLLVAYKNQLAEAAKETEVDYEEEMNGLQSSDDDYDDDGSDGEMD-DTEEGDEA 930

Query:   841 DSIRLQKLAAQARAFRPHXXXXXXXXXXXXXXXXLQSPIDEVDPFVFFVDTIKVMQASDP 900
              S++LQKLAAQA+AF                    QSPIDEVD FVFFVD I+VMQASD 
Sbjct:   931 QSVKLQKLAAQAKAFHYDDDDDDDSDDDFSDEDEFQSPIDEVDAFVFFVDAIRVMQASDA 990

Query:   901 LRFQNLTQTLEFQYQALANGVAQHADQRRV 930
              RFQNL Q+L+F YQA+ANG+AQHA+ RRV
Sbjct:   991 QRFQNLNQSLDFTYQAIANGIAQHAELRRV 1020
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS;IDA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0006606 "protein import into nucleus" evidence=RCA;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0035280 "miRNA loading onto RISC involved in gene silencing by miRNA" evidence=IMP
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TAIR|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269860 DDB_G0269860 "putative importin 7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-458 ipo7 "importin 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBA8 IPO7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000008954 kapD [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9EPL8IPO7_MOUSENo assigned EC number0.30520.95870.8737yesno
O95373IPO7_HUMANNo assigned EC number0.30520.95870.8737yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 1e-100
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-05
pfam09073424 pfam09073, BUD22, BUD22 2e-05
TIGR01651 600 TIGR01651, CobT, cobaltochelatase, CobT subunit 2e-04
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 2e-04
pfam05285317 pfam05285, SDA1, SDA1 6e-04
COG5657947 COG5657, CSE1, CAS/CSE protein involved in chromos 7e-04
pfam04147 809 pfam04147, Nop14, Nop14-like family 8e-04
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 8e-04
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.002
PRK14891131 PRK14891, PRK14891, 50S ribosomal protein L24e/unk 0.003
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.004
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  336 bits (862), Expect = e-100
 Identities = 211/928 (22%), Positives = 385/928 (41%), Gaps = 75/928 (8%)

Query: 1   MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVK---HNLQDQQVYGAL 57
            + ++IL      P + R  L   L  I   D P     L         + +   VY  L
Sbjct: 88  YLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWGLFPKAANLLRSSEANHVYTGL 147

Query: 58  FVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIF 117
             L  L + Y +K ++E+  +  ++   F  L  +   L    N      + + LI K F
Sbjct: 148 LCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGN--YGSVETLMLILKSF 205

Query: 118 WSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHI 177
            S  Y  +P  L     F++W  L L +L++P+P+E    DPE R    W K KKW  + 
Sbjct: 206 KSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYN 265

Query: 178 LNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGG-YLPDRVTNLIL 236
           L R + R+     +     +F   F       IL      +     G  +L D     I 
Sbjct: 266 LYRSFQRYIKKSYKKSY-LSFYITFM-TRVPMILATFFKQIEEWGQGQLWLSDIELYFID 323

Query: 237 QYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDL 296
            ++   +  +  + L++P L  ++  ++FPL+C ++ +++L++ DP EY+R+ YD  ++ 
Sbjct: 324 FFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNG 383

Query: 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGAL 356
            SP  A++ F+     KR +E  Q  + F++ I  +   TP      RQ +GAL  + ++
Sbjct: 384 LSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASI 443

Query: 357 CDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 416
              + +  P  + +E  +V HV P F S  G L+++A          +F D     +A  
Sbjct: 444 KSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE-EDFKDNGILLEAYE 502

Query: 417 SVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFT 476
           +  + L++  LPV +++  AL+ F+   +   +    +P+ +++   L N  E + L   
Sbjct: 503 NTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562

Query: 477 LETIVDKFGEEMAPYALGLCQNLAAAFWRC-----MNTAEADEDADDPGALAAVGCLRAI 531
           +E+ V+ F EE++P+A  L  +L   F +       N+++     DD   +AA G LR I
Sbjct: 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDK-QMAASGILRTI 621

Query: 532 STILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWS 591
            +++ S+   P +   +E +L P++  +L  +  + ++E L+I+   TF S  I   MW 
Sbjct: 622 ESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWG 681

Query: 592 LWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN 650
           ++ L++  L D     +   +   LDN+I+ G   F+      Y      +    +  + 
Sbjct: 682 IFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM--DAGIYGSICSEISKLCLCSEE 739

Query: 651 LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLR---ITVERLRRAEKSYLKCLLVQVIAD 707
               D     ++IE +  N + ++     P       +  ++           L ++I +
Sbjct: 740 NFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYAL-ELIIN 798

Query: 708 ALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLA 767
            L      TL IL + G     F  WF  +           FKR HDKK+  L + +++ 
Sbjct: 799 NLILRPKETLQILEEQGYLQSFFEKWFSQIP---------KFKRVHDKKLSVLAILTIIR 849

Query: 768 LTADQLPGE----ALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDG 823
           L       E     LG V  A +  L       A+   DE+  + D      T+ ++   
Sbjct: 850 LQEVGALPELLVHNLGEVLVALVTSLPEAIRLRAKEKDDEDFPEPD----LTTEYDE--- 902

Query: 824 DGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVD 883
                   VDA D  E                     ++D            ++ +D+VD
Sbjct: 903 -------CVDASDISETF-----------------ILEEDPL---------FETELDQVD 929

Query: 884 PFVFFVDTIKVMQASDPLRFQNLTQTLE 911
           PF +F + +  +Q +    ++ +  TL 
Sbjct: 930 PFGYFSEFLSNLQPASGTYYEKIISTLT 957

Length = 970
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|220102 pfam09073, BUD22, BUD22 Back     alignment and domain information
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 946
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
COG5656970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG22741005 consensus Predicted importin 9 [Intracellular traf 100.0
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 100.0
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.98
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.96
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.77
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.59
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.52
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.46
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.05
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.05
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.97
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.95
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.82
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.77
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.69
KOG2081559 consensus Nuclear transport regulator [Intracellul 98.65
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.27
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.22
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.05
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.96
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.91
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 97.9
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.88
KOG12481176 consensus Uncharacterized conserved protein [Funct 97.87
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.75
KOG1242569 consensus Protein containing adaptin N-terminal re 97.7
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.69
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.67
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.61
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.61
PTZ00429746 beta-adaptin; Provisional 97.53
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.52
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 97.46
PTZ00429746 beta-adaptin; Provisional 97.44
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.24
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.21
KOG1242569 consensus Protein containing adaptin N-terminal re 97.13
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.08
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.01
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 96.99
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.99
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 96.96
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.86
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.8
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.76
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.74
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.67
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.61
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.57
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.53
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.35
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.31
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.27
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.08
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.0
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.98
KOG09151702 consensus Uncharacterized conserved protein [Funct 95.95
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 95.86
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 95.84
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.58
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.46
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.34
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.23
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 95.1
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.05
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.9
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.87
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 94.77
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 94.73
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.5
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.46
COG5096757 Vesicle coat complex, various subunits [Intracellu 94.26
PRK09687280 putative lyase; Provisional 94.26
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 94.21
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 94.21
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 94.17
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.8
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 93.73
KOG0414 1251 consensus Chromosome condensation complex Condensi 93.7
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.61
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.59
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.44
PRK09687280 putative lyase; Provisional 93.37
PF14500262 MMS19_N: Dos2-interacting transcription regulator 93.22
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.12
PF05004309 IFRD: Interferon-related developmental regulator ( 92.98
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 92.94
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 92.86
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.51
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.5
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 92.45
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 92.43
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 91.89
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 90.12
KOG4653982 consensus Uncharacterized conserved protein [Funct 89.85
PF05804708 KAP: Kinesin-associated protein (KAP) 89.5
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 89.48
PF1036392 DUF2435: Protein of unknown function (DUF2435) 89.29
COG5098 1128 Chromosome condensation complex Condensin, subunit 88.89
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 88.6
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 88.37
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 86.86
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 86.74
COG5656 970 SXM1 Importin, protein involved in nuclear import 86.7
KOG4653982 consensus Uncharacterized conserved protein [Funct 86.28
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 86.25
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 85.85
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 85.22
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 85.15
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 84.5
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 84.19
KOG2956516 consensus CLIP-associating protein [General functi 84.09
KOG4224550 consensus Armadillo repeat protein VAC8 required f 83.97
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 83.97
KOG2025 892 consensus Chromosome condensation complex Condensi 83.84
PF05536543 Neurochondrin: Neurochondrin 83.2
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 83.08
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 82.77
PF1036392 DUF2435: Protein of unknown function (DUF2435) 82.08
PF05004309 IFRD: Interferon-related developmental regulator ( 81.87
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 80.22
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 80.02
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-150  Score=1266.34  Aligned_cols=910  Identities=46%  Similarity=0.795  Sum_probs=831.9

Q ss_pred             hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcchH
Q 002257            2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPV   78 (946)
Q Consensus         2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l   78 (946)
                      ||++|+.++.++|..||.|+.+++..|.++|||++||++++.+..+|+|+   .++|||.||++++|.||||.++.|.++
T Consensus        90 irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l  169 (1010)
T KOG1991|consen   90 IRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL  169 (1010)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH
Confidence            89999999999999999999999999999999999999999999999998   689999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCC
Q 002257           79 YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD  158 (946)
Q Consensus        79 ~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d  158 (946)
                      ..++..+||.+++++.++++..  +.++.++.++|+|||++++++++|..+.+.+.+..||++|++++++|+|.+.++.|
T Consensus       170 ~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d  247 (1010)
T KOG1991|consen  170 GEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLD  247 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCC
Confidence            9999999999999999998764  46788999999999999999999999998899999999999999999998888889


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 002257          159 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQY  238 (946)
Q Consensus       159 ~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~f  238 (946)
                      +++|..|||||||||++++|+|+|+|||+|+++.++|+.|+++|..+|++.+++.+++++..++.+.|++++++.+++.|
T Consensus       248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~f  327 (1010)
T KOG1991|consen  248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNF  327 (1010)
T ss_pred             hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999889999999999999999999999999999888999999999999999


Q ss_pred             HHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc
Q 002257          239 LSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN  318 (946)
Q Consensus       239 l~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~  318 (946)
                      +..|++++.+|++++||+..++..+|||.||+|++|+|+|++||.||||+.+|.++|.+||+.||.+|+.+++.+||+++
T Consensus       328 l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~  407 (1010)
T KOG1991|consen  328 LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET  407 (1010)
T ss_pred             HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257          319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG  398 (946)
Q Consensus       319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~  398 (946)
                      ++.+++|+.+++++|..++...++.|+||||++++|++++.+.+.++|+.+++.|+.+||+|+|+++.++||+||||+++
T Consensus       408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLS  487 (1010)
T ss_pred             hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence            99999999999999988765567999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhhHHHH
Q 002257          399 QYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFT  476 (946)
Q Consensus       399 ~~~~~~f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~  476 (946)
                      +|+++.|+++..+.++++.+.+||. |+++|||+.||.||+.|+.+.+ .++.++|+++++|+.|+++++++++|.+..+
T Consensus       488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            9999999999999999999999998 8999999999999999999976 5577999999999999999999999999999


Q ss_pred             HHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHH
Q 002257          477 LETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIM  556 (946)
Q Consensus       477 L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i  556 (946)
                      |+++|..|++++.|||.+++++|+.+|++++..++++.+.++++.++++|||+||++++.++++.|+++.++++.++|++
T Consensus       568 me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi  647 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVI  647 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998655444556799999999999999999999999999999999999999


Q ss_pred             HHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHH
Q 002257          557 RRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQ  636 (946)
Q Consensus       557 ~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~  636 (946)
                      .++|+++..||+++++++...+++.++.|+|.||++||.+++++..|+.+|+++++++|+||+.+|...++  +++.|++
T Consensus       648 ~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~--s~~~y~~  725 (1010)
T KOG1991|consen  648 GFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL--SNPDYLQ  725 (1010)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh--ccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998  8899999


Q ss_pred             HHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHH
Q 002257          637 SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSL  715 (946)
Q Consensus       637 ~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~  715 (946)
                      .++.|+++++++++..+++...||+|++.++++|+|.+++|+|.+++.++.|+.. .++..++..++.|++++++|||..
T Consensus       726 il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l  805 (1010)
T KOG1991|consen  726 ILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKL  805 (1010)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence            9999999999998888989999999999999999999999999999999999988 889999999999999999999999


Q ss_pred             HHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhcc-ccCCCChhhHHHHHHHHHHHHHHHHH
Q 002257          716 TLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL-TADQLPGEALGRVFRATLDLLVAYKE  794 (946)
Q Consensus       716 ~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~-~~~~l~~~~~~~~~~~~~~ll~~l~~  794 (946)
                      ++++|++.|++..||..|++...         .+.+.||||+|++||++|+.+ +.+++|..+.++++.+++.++.+||+
T Consensus       806 tL~iLe~~~~~~~ff~~wf~~~~---------~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~  876 (1010)
T KOG1991|consen  806 TLGILENQGFLNNFFTLWFQFIN---------QFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPE  876 (1010)
T ss_pred             HHHHHHHcCCcccHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998         888899999999999999999 55666665677999999999999999


Q ss_pred             HHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCC---CCCC
Q 002257          795 QVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDD---DFSD  871 (946)
Q Consensus       795 ~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~d  871 (946)
                      |+++|++.+++.  +++++.++++++||   .. +   |++|+++.+.+|.+.+...+.+..+.+++|||+||   +++|
T Consensus       877 ala~ra~~~ee~--~~e~~~~~~~~~e~---~~-~---d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~e  947 (1010)
T KOG1991|consen  877 ALAERAQVEEED--SEEGEEEDDDEEED---FI-D---DEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEE  947 (1010)
T ss_pred             HHHHHHHhhccc--cccccCCCCcchhh---cc-C---ccccccccchhHHHhhccccccccccccccccccchhccccc
Confidence            999998654321  11111111111111   11 1   11111112224444443221111111222222222   4478


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhcChHHHHHHHccCCHHHHHHHHHHHHHHHHhHHHHH
Q 002257          872 DEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE  933 (946)
Q Consensus       872 ~~~~~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~  933 (946)
                      |+.++||+|+||+|.+|++++++++.+++++|+.++++|++++|+.||.++++++++|.+++
T Consensus       948 d~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~~~~~~r~a~~~ 1009 (1010)
T KOG1991|consen  948 DELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTILTHAEQRRAVAE 1009 (1010)
T ss_pred             cccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHHHhHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999987764

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
1wa5_C960 Crystal Structure Of The Exportin Cse1p Complexed W 5e-07
1z3h_A968 The Exportin Cse1 In Its Cargo-free, Cytoplasmic St 6e-07
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 159/371 (42%), Gaps = 36/371 (9%)
Query: 1   MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY---GAL 57
           +++  I+  +  +P  L+VQ+GE + +I  +D+P++WP LL  +   L +  +    G L
Sbjct: 85  LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144
Query: 58  FVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLV---QIVNPSLEVA-D 108
            V   + +++   F+SDE   E   V  +    F +LL   +  +   +    SL +  D
Sbjct: 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204
Query: 109 LIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168
           ++ ++ K+++     +IP +  + N+    M +F   L    P   +P + E        
Sbjct: 205 VLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASV--LI 260
Query: 169 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228
           KVK     ++    TR+ D+         F  M       + ++   NLL  I       
Sbjct: 261 KVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSISNQPKY- 305
Query: 229 DRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 286
           D + +  L +L+        + +   +  ++ +  +I+ P +   + D +L+++DP EY+
Sbjct: 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYI 365
Query: 287 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQK 346
           R+  +   D  + R A  DF+ EL  K        F+  + G   +Y   P   K ++ K
Sbjct: 366 RRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--SKNWKFK 422
Query: 347 DGALLAIGALC 357
           D  +    AL 
Sbjct: 423 DLYIYLFTALA 433
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query946
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-112
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-27
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 5e-21
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 5e-18
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 3e-08
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 3e-07
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 6e-06
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 3e-05
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
 Score =  368 bits (946), Expect = e-112
 Identities = 133/864 (15%), Positives = 310/864 (35%), Gaps = 103/864 (11%)

Query: 1   MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGAL 57
           +++  I+  +  +P  L+VQ+GE + +I  +D+P++WP LL  +   L +       G L
Sbjct: 85  LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144

Query: 58  FVLRILSRKY--EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPS-------LEVAD 108
            V   + +++   F+SDE    +  +++      LN+   + + +  +         + D
Sbjct: 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204

Query: 109 LIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168
           ++ ++ K+++     +IP+   D       M +F   L    P   +P + E   +    
Sbjct: 205 VLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIFHKYLSYSNPLLEDPDETE--HASVLI 260

Query: 169 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228
           KVK     ++    TR+ D                     + ++   NLL  I       
Sbjct: 261 KVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS-NQPKY 305

Query: 229 DRVTNLILQYLSNSISKNSMYNL--LQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 286
           D + +  L +L+        + +   +  ++ +  +I+ P +   + D +L+++DP EY+
Sbjct: 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYI 365

Query: 287 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQK 346
           R+  +   D  + R A  DF+ EL  K        F+  + G   +Y   P +   ++ K
Sbjct: 366 RRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSK--NWKFK 422

Query: 347 DGALLAIGALC------DKLKQTEPYKSELERMLVQHVFPEFSS---PVGHLRAKAAWVA 397
           D  +    AL       +    +      +     + + P+ +S   P   LR  A    
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482

Query: 398 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE---------ACRDLN 448
             +   N   +    + +  + + L+  E  V   +   +   +                
Sbjct: 483 YTFR--NQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540

Query: 449 EIRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500
           +I      LL     L+ +         ENE L+ ++  ++    + + P    L     
Sbjct: 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600

Query: 501 AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRML 560
                        ++  +P          +I  IL            +  +++P    + 
Sbjct: 601 EIVT------IMAKNPSNP--RFTHYTFESIGAILNYTQ--RQNLPLLVDSMMPTFLTVF 650

Query: 561 TTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS 620
           + D QE    V +I++++   S TI   +  L   ++           P +   L ++I 
Sbjct: 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIK 710

Query: 621 RGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVE 679
             ++ F           +  +   ++A K  E         L+E +        +  +++
Sbjct: 711 TDSSIF------PDLVPVLGIFQRLIASKAYEVH----GFDLLEHIMLLIDMNRLRPYIK 760

Query: 680 PYLRITVERLRRAEK-SYLKCLLVQVIADALYYNSSLTLSILHKL--GVATEVF-NLWFQ 735
               + ++RL+ ++   Y+K L V     +    S   +  + ++  G+  +++ N    
Sbjct: 761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIIT 820

Query: 736 MLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQ 795
            L                D+K+  +G+ ++  +   Q        +  +T++ ++     
Sbjct: 821 TLP---------TIGNLLDRKIALIGVLNM--VINGQFFQSKYPTLISSTMNSIIETASS 869

Query: 796 VAEAAKDEE---AEDDDDMDGFQT 816
            + A    +    ++ +++  F +
Sbjct: 870 QSIANLKNDYVDLDNLEEISTFGS 893
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query946
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 99.97
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.95
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.93
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.9
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.85
1qgr_A876 Protein (importin beta subunit); transport recepto 99.83
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.82
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.81
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.73
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.73
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.55
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.51
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.27
2x19_B963 Importin-13; nuclear transport, protein transport; 99.18
2x1g_F971 Cadmus; transport protein, developmental protein, 99.17
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.01
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.96
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 98.78
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.58
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.47
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.46
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.3
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.28
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.23
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.21
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.2
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.16
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.13
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.1
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.09
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.95
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.85
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.83
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.7
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.58
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.53
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.52
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.5
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 97.49
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.42
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.36
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.33
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.1
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.02
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.98
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.97
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.77
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.67
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.67
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.59
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.5
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.49
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.41
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.4
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.35
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 96.02
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.84
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.77
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.63
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.47
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.37
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.31
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.27
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.17
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 95.09
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 94.6
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 94.42
3grl_A651 General vesicular transport factor P115; vesicle t 94.16
2db0_A253 253AA long hypothetical protein; heat repeats, hel 94.1
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 94.06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 93.75
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.71
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 93.51
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 93.38
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 93.21
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.9
3nmz_A458 APC variant protein; protein-protein complex, arma 91.62
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 91.44
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 91.03
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 90.69
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 89.49
2db0_A253 253AA long hypothetical protein; heat repeats, hel 88.85
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.2
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 86.21
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 83.9
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 83.87
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 83.49
3grl_A651 General vesicular transport factor P115; vesicle t 82.13
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 82.07
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 81.38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
Probab=100.00  E-value=3.4e-84  Score=819.05  Aligned_cols=818  Identities=17%  Similarity=0.241  Sum_probs=664.4

Q ss_pred             hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhccc--CCCcCcc
Q 002257            2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF--KSDEERT   76 (946)
Q Consensus         2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~--~~~~~~~   76 (946)
                      ||+.|+++|.++++.||++++.+|+.|+++|||++||+|+|.|++.++++   .++|+|.+|++|+|+|++  +.++.+.
T Consensus        86 ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~  165 (960)
T 1wa5_C           86 IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL  165 (960)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence            89999999998889999999999999999999999999999999999877   679999999999999985  4444455


Q ss_pred             hHHHHHHHHhHHHHHHHHHH---hhccCCC----hhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCC
Q 002257           77 PVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP  149 (946)
Q Consensus        77 ~l~~i~~~~~p~L~~i~~~l---~~~~~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~  149 (946)
                      ++..++..++|.++++|..+   ++....+    ....++++.++|+|++++.+++|+++  .+++..|++.|.+++...
T Consensus       166 ~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~  243 (960)
T 1wa5_C          166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF--EDNIQVGMGIFHKYLSYS  243 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH--HHTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHHHHHHHHcCC
Confidence            67778899999999998775   3332111    12457788999999999889999988  569999999999999876


Q ss_pred             CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCH
Q 002257          150 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD  229 (946)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d  229 (946)
                      .|..  ..|+++++..+||++|+|+|+++.+++++|+.              ++.+|++.+++.+|+.+.... +.+.++
T Consensus       244 ~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~--------------~f~~~~~~~~~~~~~~l~~~~-~~~~~~  306 (960)
T 1wa5_C          244 NPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS-NQPKYD  306 (960)
T ss_dssp             SCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHHCC-SCTTSH
T ss_pred             CCcc--cCCcccccccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcC-CCcCcH
Confidence            5522  23334455678899999999999999999742              236788999999999997643 346779


Q ss_pred             HHHHHHHHHHHhhccCchhhhhch--hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHH
Q 002257          230 RVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV  307 (946)
Q Consensus       230 ~~~~~~l~fl~~~~~~~~~~~~l~--~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll  307 (946)
                      +++.++++||+++++.+..++.++  +++..++..+++|+|+++++|++.|++||+||++++.|+ ++.+|+|+||.++|
T Consensus       307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s~R~aa~~~L  385 (960)
T 1wa5_C          307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRRRACTDFL  385 (960)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCc-ccccCcHHHHHHHH
Confidence            999999999999999888888887  899999988999999999999999999999999998775 56789999999999


Q ss_pred             HHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcch-----HHHHHHHHHhcccC
Q 002257          308 SELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYK-----SELERMLVQHVFPE  381 (946)
Q Consensus       308 ~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~-----~~l~~~l~~~v~p~  381 (946)
                      ..++.++++.+++.+++++.++++++.+++.  .+|+.||||++++|+++++... .....     .++++|+.++|+|.
T Consensus       386 ~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~  463 (960)
T 1wa5_C          386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD  463 (960)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH
Confidence            9999999989999999999999998866553  3899999999999999976421 11111     17889999999999


Q ss_pred             CCCC---ccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---------cccc
Q 002257          382 FSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---------DLNE  449 (946)
Q Consensus       382 l~~~---~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~---------~~~~  449 (946)
                      ++++   +|+||+||||++|+|+++.  +++.+..+++.++++|.|++++||.+||.||.+|++...         .++.
T Consensus       464 l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~  541 (960)
T 1wa5_C          464 LTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED  541 (960)
T ss_dssp             HHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred             hcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence            9877   9999999999999999853  568999999999999999899999999999999998532         3577


Q ss_pred             cccchHHHHHHHHHHHhhh--------hhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhh
Q 002257          450 IRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA  521 (946)
Q Consensus       450 l~p~l~~il~~Ll~ll~~~--------~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~  521 (946)
                      +.||++++++.|+.++++.        +++.++.+|++++..+++++.||+..++++|...+.++++    ++    +..
T Consensus       542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~----~~----~~~  613 (960)
T 1wa5_C          542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK----NP----SNP  613 (960)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----SC----CCH
T ss_pred             hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh----CC----CCc
Confidence            9999999999999999986        7788999999999999999999999999999987766543    33    334


Q ss_pred             HHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HH
Q 002257          522 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMM--EA  599 (946)
Q Consensus       522 ~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~--~~  599 (946)
                      .+.+.++++|+.++++  ..|+.+..+++.++|++..+|+++..+|.++++++++.+++..++++|.||++||.++  ..
T Consensus       614 ~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~  691 (960)
T 1wa5_C          614 RFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNV  691 (960)
T ss_dssp             HHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGG
T ss_pred             HHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHH
Confidence            5567899999999998  4566788999999999999999988899999999999999887899999999999998  55


Q ss_pred             HhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC-chhch
Q 002257          600 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWV  678 (946)
Q Consensus       600 ~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l  678 (946)
                      +...  ++++.++++|.+|+..+++.|++      ++.+++++.+++.++. .   ...|+.+++.++.++|++ +.||+
T Consensus       692 ~~~~--~~~~~~~~~L~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~-~---~~~a~~ll~~i~~~~~~~~~~~yl  759 (960)
T 1wa5_C          692 WELK--GNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKA-Y---EVHGFDLLEHIMLLIDMNRLRPYI  759 (960)
T ss_dssp             GCCT--TTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTT-T---HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred             hcCC--CCchhHHHHHHHHHHhChHHHHH------HHHHHHHHHHHhCCCc-c---cchHHHHHHHHHHHCCHHHHHHHH
Confidence            5533  69999999999999999888872      6778899999987653 2   157999999999999998 99999


Q ss_pred             HHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhCHHHHHHHHHhcC---chHHHHHHHHHhHHHHhhhccccccccchh
Q 002257          679 EPYLRITVERLRRAEKS-YLKCLLVQVIADALYYNSSLTLSILHKLG---VATEVFNLWFQMLQQVKKNGLRVNFKREHD  754 (946)
Q Consensus       679 ~~il~~~~~~L~~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~L~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d  754 (946)
                      +.++..++++++..++. ..+.+++++...+++++|+.+++.|++.+   ....+++.|+.++.         ++.+.+|
T Consensus       760 ~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~---------~~~~~~e  830 (960)
T 1wa5_C          760 KQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLP---------TIGNLLD  830 (960)
T ss_dssp             HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------GCCSHHH
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchh---------hccCHHH
Confidence            99999999999885444 44477777777888999999999999754   12234448999998         9999999


Q ss_pred             hHHHHHHHHHHhccc---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCC
Q 002257          755 KKVCCLGLTSLLALT---ADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMG  831 (946)
Q Consensus       755 ~Kl~~lal~~Ll~~~---~~~l~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~  831 (946)
                      ||++++||++|++.+   ++.+.+ .|+.++.++++++..++++        ... +|    ++  +.+ |         
T Consensus       831 rk~~~~gl~~ll~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~--------~~~-~~----~~--e~~-d---------  884 (960)
T 1wa5_C          831 RKIALIGVLNMVINGQFFQSKYPT-LISSTMNSIIETASSQSIA--------NLK-ND----YV--DLD-N---------  884 (960)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHCGG-GHHHHHHHHHHHHHSCSTT--------CSC-CS----CC----------------
T ss_pred             HHHHHHHHHHHHhcccccchhHHH-HHHHHHHHHHHHHhCCccc--------ccC-Cc----cc--ccc-c---------
Confidence            999999999999987   222222 6999999999988854421        001 10    00  000 0         


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC----chHHHHHHHHHHHhhcChHHHHHH-
Q 002257          832 VDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV----DPFVFFVDTIKVMQASDPLRFQNL-  906 (946)
Q Consensus       832 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~~----d~~~~~~~~l~~~~~~~~~~~~~l-  906 (946)
                        +||.++++..|.++...   +                  ....||++++    |++.||++.|+++++++|++|+.+ 
T Consensus       885 --~~~~~~~~~~~~~L~~~---~------------------~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~~~~l~  941 (960)
T 1wa5_C          885 --LEEISTFGSHFSKLVSI---S------------------EKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTI  941 (960)
T ss_dssp             ---CCCCCTTCCCCCCGGG---C------------------CCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             --cccccccchHHHHHHhC---C------------------CCCCCChhhhcCcCCHHHHHHHHHHHHhccCCchHHHHH
Confidence              00011222223321110   0                  0114677777    999999999999999999999998 


Q ss_pred             HccCCHHHHHHHHHHHH
Q 002257          907 TQTLEFQYQALANGVAQ  923 (946)
Q Consensus       907 ~~~l~~~~~~~l~~~~~  923 (946)
                      .++|++++|+.|+++++
T Consensus       942 ~~~l~~~~~~~l~~~~~  958 (960)
T 1wa5_C          942 LPQLTQENQVKLNQLLV  958 (960)
T ss_dssp             GGGSCHHHHHHHHHHHC
T ss_pred             hccCCHHHHHHHHHHHc
Confidence            77999999999999985
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 946
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-107
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 8e-21
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-14
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.002
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  353 bits (906), Expect = e-107
 Identities = 132/951 (13%), Positives = 312/951 (32%), Gaps = 131/951 (13%)

Query: 1   MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGAL 57
           +++  I+  +  +P  L+VQ+GE + +I  +D+P++WP LL  +   L +       G L
Sbjct: 85  LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144

Query: 58  FVLRILSRKY--EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSL-------EVAD 108
            V   + +++   F+SDE    +  +++      LN+   + + +  +         + D
Sbjct: 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204

Query: 109 LIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168
           ++ ++ K+++     +IP+   D       M +F   L    P   +P + E   +    
Sbjct: 205 VLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIFHKYLSYSNPLLEDPDETEH--ASVLI 260

Query: 169 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228
           KVK     ++    TR+ D                     + ++   NLL  I       
Sbjct: 261 KVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS-NQPKY 305

Query: 229 DRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 286
           D + +  L +L+        + +      ++ +  +I+ P +   + D +L+++DP EY+
Sbjct: 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYI 365

Query: 287 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYR-- 344
           R+      D  + R A  DF+ EL  K        F+  + G   +Y   P +   ++  
Sbjct: 366 RR-DLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDL 424

Query: 345 --QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS---PVGHLRAKAAWVAGQ 399
                 AL   G + +    +      +     + + P+ +S   P   LR  A      
Sbjct: 425 YIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT 484

Query: 400 YAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD---------LNEI 450
           + +          + +  + + L+  E  V   +   +   +                +I
Sbjct: 485 FRNQLTKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542

Query: 451 RPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAA 502
                 LL     L+ +         ENE L+ ++  ++    + + P    L       
Sbjct: 543 SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEI 602

Query: 503 FWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 562
                      ++  +P          +I  IL            +  +++P    + + 
Sbjct: 603 VT------IMAKNPSNP--RFTHYTFESIGAILNYTQ--RQNLPLLVDSMMPTFLTVFSE 652

Query: 563 DGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRG 622
           D QE    V +I++++   S TI   +  L   ++           P +   L ++I   
Sbjct: 653 DIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTD 712

Query: 623 TAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV-DHWVEPY 681
           ++ F           +  +   ++A K  E         L+E +           +++  
Sbjct: 713 SSIFPD------LVPVLGIFQRLIASKAYEVH----GFDLLEHIMLLIDMNRLRPYIKQI 762

Query: 682 LRITVERLRRAEK-SYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQV 740
             + ++RL+ ++   Y+K L V     +    S   +  + ++        L+ Q+    
Sbjct: 763 AVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEV-----QDGLFQQIWGNF 817

Query: 741 KKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAA 800
               L        D+K+  +G+ +++              +  +T++ +           
Sbjct: 818 IITTLP-TIGNLLDRKIALIGVLNMVINGQFFQS--KYPTLISSTMNSI----------- 863

Query: 801 KDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDE 860
                     ++   +    +  +       ++      +   +L  ++           
Sbjct: 864 ----------IETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISE---------- 903

Query: 861 DDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLR-FQNLTQTL 910
                       + L          ++  + +    A         +   L
Sbjct: 904 ---------KPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQL 945
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query946
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.71
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.57
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.54
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.21
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.19
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.17
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.9
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.89
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.65
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.48
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.27
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.71
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.58
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.54
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.33
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.18
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.28
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.77
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 94.18
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.47
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 92.81
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 92.73
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 92.27
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 90.79
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 86.94
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 85.72
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 82.76
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-67  Score=667.43  Aligned_cols=827  Identities=16%  Similarity=0.219  Sum_probs=638.2

Q ss_pred             hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCC--CcCcc
Q 002257            2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS--DEERT   76 (946)
Q Consensus         2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~--~~~~~   76 (946)
                      ||++|+++|.+++++||++++.+|+.|+++|||++||+|+|.|.+.++++   .++++|.+|+.++|.|++..  ++.+.
T Consensus        86 Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~  165 (959)
T d1wa5c_          86 IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL  165 (959)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHh
Confidence            89999999999999999999999999999999999999999999999987   67899999999999998643  33345


Q ss_pred             hHHHHHHHHhHHHHHHHHHHhhcc---CCC----hhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCC
Q 002257           77 PVYRIVEETFHHLLNIFNRLVQIV---NPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP  149 (946)
Q Consensus        77 ~l~~i~~~~~p~L~~i~~~l~~~~---~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~  149 (946)
                      .+..++..++|.+..++....+..   ..+    .......+.++|+|+.++..++|+++  .+++..|++.|..+++.+
T Consensus       166 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~  243 (959)
T d1wa5c_         166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF--EDNIQVGMGIFHKYLSYS  243 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH--HHTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHHHHHHHhcc
Confidence            677788888888888887654321   111    12345678899999999988899888  579999999999999987


Q ss_pred             CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCH
Q 002257          150 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD  229 (946)
Q Consensus       150 ~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d  229 (946)
                      .|..  ..+.+......+.++|+++++++..+..+|+.              +..++++.+++.+++.+.... .....+
T Consensus       244 ~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~-~~~~~~  306 (959)
T d1wa5c_         244 NPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS-NQPKYD  306 (959)
T ss_dssp             SCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHHCC-SCTTSH
T ss_pred             cccc--cCchhhhhhhHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHh-cccccH
Confidence            6633  22223344567789999999999999988631              346678888888888887643 334568


Q ss_pred             HHHHHHHHHHHhhccCchhhhhch--hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHH
Q 002257          230 RVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV  307 (946)
Q Consensus       230 ~~~~~~l~fl~~~~~~~~~~~~l~--~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll  307 (946)
                      .++.++++|+..+++.+..++.+.  +++..++..+|+|+++++++|++.|++||++|++++.+. ++.+++|.||..++
T Consensus       307 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~-~~~~~~r~~a~~ll  385 (959)
T d1wa5c_         307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRRRACTDFL  385 (959)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhh-cccccHHHHHHHHH
Confidence            999999999999999888877764  789999999999999999999999999999999998766 46799999999999


Q ss_pred             HHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhh------cCCcchHHHHHHHHHhcccC
Q 002257          308 SELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK------QTEPYKSELERMLVQHVFPE  381 (946)
Q Consensus       308 ~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~------~~~~~~~~l~~~l~~~v~p~  381 (946)
                      ..+++++++.+.+.+++++.+.++++...+.  .+|+.||+++.++|+++....      .......++.+++.+++.|.
T Consensus       386 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~  463 (959)
T d1wa5c_         386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD  463 (959)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHHhhccCCc--cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence            9999999888888999999888887655443  389999999999999986421      11122346889999999998


Q ss_pred             CC---CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---------cccc
Q 002257          382 FS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---------DLNE  449 (946)
Q Consensus       382 l~---~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~---------~~~~  449 (946)
                      +.   ++++++|+|+||++|+|++..  .++.+.++++.++++|++++.+||.+||.|+.+++....         ..+.
T Consensus       464 l~~~~~~~~~lr~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~  541 (959)
T d1wa5c_         464 LTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED  541 (959)
T ss_dssp             HHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred             HccCCCchHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHH
Confidence            75   367899999999999999854  567899999999999999999999999999999998642         3467


Q ss_pred             cccchHHHHHHHHHHHhhh--------hhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhh
Q 002257          450 IRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA  521 (946)
Q Consensus       450 l~p~l~~il~~Ll~ll~~~--------~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~  521 (946)
                      +.||++++++.|+..+.+.        ..+.++.+|++++..+++.+.||+..+++.|...+.+..+    ++    .+.
T Consensus       542 l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~----~~~  613 (959)
T d1wa5c_         542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK----NP----SNP  613 (959)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----SC----CCH
T ss_pred             HHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc----cch
Confidence            8999999999999998764        2356889999999999999999999999999876655443    44    445


Q ss_pred             HHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 002257          522 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALA  601 (946)
Q Consensus       522 ~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~  601 (946)
                      ...+.++++++.++...  .|+.+..+++.++|++..+++++..++.++++++|..++++++++++.+|.+|+.++....
T Consensus       614 ~~~~~~~e~l~~l~~~~--~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  691 (959)
T d1wa5c_         614 RFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNV  691 (959)
T ss_dssp             HHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGG
T ss_pred             HHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHH
Confidence            66778999999999875  4566788999999999999999889999999999999999999999999999999987766


Q ss_pred             hhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC-chhchHH
Q 002257          602 DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEP  680 (946)
Q Consensus       602 ~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l~~  680 (946)
                      ....++++.+..++++|+.++++.+..      ...+++++.+++.++..+    ..++.+++.++.++++. +.++++.
T Consensus       692 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~l~~~~~~l~~~~~~----~~~~~ll~~ii~~~~~~~~~~~l~~  761 (959)
T d1wa5c_         692 WELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYE----VHGFDLLEHIMLLIDMNRLRPYIKQ  761 (959)
T ss_dssp             GCCTTTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTTTH----HHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCHHhhcc------hHHHHHHHHHHHCCCcch----HHHHHHHHHHHHHCchhhhHhHHHH
Confidence            455789999999999999999987762      356788888888654322    35899999999999874 7899999


Q ss_pred             HHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhCHHHHHHHHHhc--CchH-HHHHHHHHhHHHHhhhccccccccchhhH
Q 002257          681 YLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILHKL--GVAT-EVFNLWFQMLQQVKKNGLRVNFKREHDKK  756 (946)
Q Consensus       681 il~~~~~~L~~~~-~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~--~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~d~K  756 (946)
                      ++..+++++...+ ....+..++.+...+++++|+.+++++++.  +... .+...|+++.+         ++.+.++||
T Consensus       762 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~k  832 (959)
T d1wa5c_         762 IAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLP---------TIGNLLDRK  832 (959)
T ss_dssp             HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------GCCSHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhccc---------ccCCHHHHH
Confidence            9999999998844 444444455555555678999999999873  2333 34456889988         999999999


Q ss_pred             HHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002257          757 VCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAED  836 (946)
Q Consensus       757 l~~lal~~Ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~  836 (946)
                      ++++|+++|++.++..++.  +..++..++..+.   +...   ....   ++..++..    +.++.          ++
T Consensus       833 ~~~l~l~~ll~~~~~~~~~--~~~~~~~~~~~l~---~~~~---~~~~---~~~~~~~~----~~~~~----------~~  887 (959)
T d1wa5c_         833 IALIGVLNMVINGQFFQSK--YPTLISSTMNSII---ETAS---SQSI---ANLKNDYV----DLDNL----------EE  887 (959)
T ss_dssp             HHHHHHHHHHHSCHHHHHH--CGGGHHHHHHHHH---HHHH---SCST---TCSCCSCC-------------------CC
T ss_pred             HHHHHHHHHhcCChhhhhH--HHHHHHHHHHHHH---HHhh---cccc---ccccccch----hcccc----------cc
Confidence            9999999999865432221  2233333333332   1111   0000   00000000    00000          00


Q ss_pred             CChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhcCh-HHHHHHHccCCHHHH
Q 002257          837 GDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDP-LRFQNLTQTLEFQYQ  915 (946)
Q Consensus       837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~~d~~~~~~~~l~~~~~~~~-~~~~~l~~~l~~~~~  915 (946)
                      ..+++..+.+ +                .+....+.+-+.+|.+++|+++||+++++++++.+| ..|++++++|+++++
T Consensus       888 ~~~~~~~~~~-~----------------~~~~~~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  950 (959)
T d1wa5c_         888 ISTFGSHFSK-L----------------VSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQ  950 (959)
T ss_dssp             CCCTTCCCCC-C----------------GGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHHGGGSCHHHH
T ss_pred             ccccchhhhH-H----------------HHhhhcccCCcccCCcchhHHHHHHHHHHHHHHhCCHHHHHHHHHhCCHHHH
Confidence            0000000000 0                000001122346788889999999999999998877 578999999999999


Q ss_pred             HHHHHHHH
Q 002257          916 ALANGVAQ  923 (946)
Q Consensus       916 ~~l~~~~~  923 (946)
                      +.|+++++
T Consensus       951 ~~L~~~l~  958 (959)
T d1wa5c_         951 VKLNQLLV  958 (959)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99999874
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure